Multiple sequence alignment - TraesCS3D01G242600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G242600 chr3D 100.000 2480 0 0 1 2480 338298045 338300524 0.000000e+00 4580.0
1 TraesCS3D01G242600 chr3D 90.323 93 7 1 1726 1816 592318144 592318236 1.200000e-23 121.0
2 TraesCS3D01G242600 chr3B 91.149 1593 70 26 157 1728 436525500 436527042 0.000000e+00 2095.0
3 TraesCS3D01G242600 chr3B 92.029 138 6 2 34 167 436517526 436517662 3.260000e-44 189.0
4 TraesCS3D01G242600 chr3B 91.057 123 11 0 1813 1935 436527047 436527169 1.530000e-37 167.0
5 TraesCS3D01G242600 chr3B 90.698 86 8 0 1730 1815 46965438 46965353 5.600000e-22 115.0
6 TraesCS3D01G242600 chr3A 86.882 1700 101 53 103 1723 456408652 456410308 0.000000e+00 1792.0
7 TraesCS3D01G242600 chr4A 91.765 85 7 0 1731 1815 661770093 661770177 4.330000e-23 119.0
8 TraesCS3D01G242600 chr6D 90.698 86 6 2 1731 1815 432030058 432029974 2.020000e-21 113.0
9 TraesCS3D01G242600 chr6D 97.674 43 1 0 2147 2189 459736431 459736389 9.510000e-10 75.0
10 TraesCS3D01G242600 chr5D 90.588 85 8 0 1731 1815 432276414 432276330 2.020000e-21 113.0
11 TraesCS3D01G242600 chr5D 90.698 86 6 2 1731 1815 454513184 454513268 2.020000e-21 113.0
12 TraesCS3D01G242600 chr5D 90.588 85 8 0 1731 1815 537030009 537030093 2.020000e-21 113.0
13 TraesCS3D01G242600 chr5D 93.750 48 3 0 2147 2194 565282555 565282508 3.420000e-09 73.1
14 TraesCS3D01G242600 chr1D 90.588 85 8 0 1731 1815 421195719 421195803 2.020000e-21 113.0
15 TraesCS3D01G242600 chr1D 90.588 85 8 0 1731 1815 433604646 433604562 2.020000e-21 113.0
16 TraesCS3D01G242600 chr1B 83.333 102 8 7 2100 2196 186525200 186525103 4.390000e-13 86.1
17 TraesCS3D01G242600 chr7B 100.000 43 0 0 2147 2189 6097434 6097476 2.040000e-11 80.5
18 TraesCS3D01G242600 chr1A 100.000 42 0 0 2148 2189 497079802 497079843 7.350000e-11 78.7
19 TraesCS3D01G242600 chr2A 97.619 42 1 0 2148 2189 779276984 779276943 3.420000e-09 73.1
20 TraesCS3D01G242600 chr7A 90.566 53 4 1 2147 2199 509466155 509466206 4.430000e-08 69.4
21 TraesCS3D01G242600 chr5B 95.349 43 2 0 2147 2189 626790286 626790328 4.430000e-08 69.4
22 TraesCS3D01G242600 chr5A 95.349 43 2 0 2147 2189 670572487 670572529 4.430000e-08 69.4
23 TraesCS3D01G242600 chr2D 94.872 39 2 0 2106 2144 526511090 526511128 7.410000e-06 62.1
24 TraesCS3D01G242600 chr4D 100.000 29 0 0 2265 2293 177610926 177610898 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G242600 chr3D 338298045 338300524 2479 False 4580 4580 100.000 1 2480 1 chr3D.!!$F1 2479
1 TraesCS3D01G242600 chr3B 436525500 436527169 1669 False 1131 2095 91.103 157 1935 2 chr3B.!!$F2 1778
2 TraesCS3D01G242600 chr3A 456408652 456410308 1656 False 1792 1792 86.882 103 1723 1 chr3A.!!$F1 1620

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
62 63 0.037697 TCAGGTATGCTTGCGACGTT 60.038 50.0 0.0 0.0 0.0 3.99 F
492 498 0.175760 TCAGTTCAGATACGCCCTGC 59.824 55.0 0.0 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1443 1518 0.399454 AGCAGCAGAAGAAGCAGGAA 59.601 50.0 0.0 0.0 0.00 3.36 R
2129 2239 0.103026 TCGTCTTGCATGGAGATCCG 59.897 55.0 0.0 0.0 39.43 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.470267 GTACGTGCGGTGATGTGG 58.530 61.111 0.00 0.00 0.00 4.17
18 19 2.433491 TACGTGCGGTGATGTGGC 60.433 61.111 0.00 0.00 0.00 5.01
19 20 2.938086 TACGTGCGGTGATGTGGCT 61.938 57.895 0.00 0.00 0.00 4.75
20 21 2.829043 TACGTGCGGTGATGTGGCTC 62.829 60.000 0.00 0.00 0.00 4.70
21 22 3.490759 GTGCGGTGATGTGGCTCG 61.491 66.667 0.00 0.00 0.00 5.03
22 23 4.758251 TGCGGTGATGTGGCTCGG 62.758 66.667 0.00 0.00 0.00 4.63
24 25 4.457496 CGGTGATGTGGCTCGGCT 62.457 66.667 0.00 0.00 0.00 5.52
25 26 2.045926 GGTGATGTGGCTCGGCTT 60.046 61.111 0.00 0.00 0.00 4.35
26 27 1.675641 GGTGATGTGGCTCGGCTTT 60.676 57.895 0.00 0.00 0.00 3.51
27 28 1.244019 GGTGATGTGGCTCGGCTTTT 61.244 55.000 0.00 0.00 0.00 2.27
28 29 0.598065 GTGATGTGGCTCGGCTTTTT 59.402 50.000 0.00 0.00 0.00 1.94
47 48 3.641437 TTTCTTTTTGCGGTGATCAGG 57.359 42.857 0.00 0.00 0.00 3.86
48 49 2.270352 TCTTTTTGCGGTGATCAGGT 57.730 45.000 0.00 0.00 0.00 4.00
49 50 3.410631 TCTTTTTGCGGTGATCAGGTA 57.589 42.857 0.00 0.00 0.00 3.08
50 51 3.950397 TCTTTTTGCGGTGATCAGGTAT 58.050 40.909 0.00 0.00 0.00 2.73
51 52 3.689161 TCTTTTTGCGGTGATCAGGTATG 59.311 43.478 0.00 0.00 0.00 2.39
52 53 1.378531 TTTGCGGTGATCAGGTATGC 58.621 50.000 0.00 0.00 0.00 3.14
53 54 0.541392 TTGCGGTGATCAGGTATGCT 59.459 50.000 0.00 0.00 0.00 3.79
54 55 0.541392 TGCGGTGATCAGGTATGCTT 59.459 50.000 0.00 0.00 0.00 3.91
55 56 0.940126 GCGGTGATCAGGTATGCTTG 59.060 55.000 0.00 0.00 0.00 4.01
56 57 0.940126 CGGTGATCAGGTATGCTTGC 59.060 55.000 0.00 0.00 0.00 4.01
57 58 0.940126 GGTGATCAGGTATGCTTGCG 59.060 55.000 0.00 0.00 0.00 4.85
58 59 1.473257 GGTGATCAGGTATGCTTGCGA 60.473 52.381 0.00 0.00 0.00 5.10
59 60 1.594862 GTGATCAGGTATGCTTGCGAC 59.405 52.381 0.00 0.00 0.00 5.19
60 61 0.855349 GATCAGGTATGCTTGCGACG 59.145 55.000 0.00 0.00 0.00 5.12
61 62 0.175760 ATCAGGTATGCTTGCGACGT 59.824 50.000 0.00 0.00 0.00 4.34
62 63 0.037697 TCAGGTATGCTTGCGACGTT 60.038 50.000 0.00 0.00 0.00 3.99
63 64 0.370273 CAGGTATGCTTGCGACGTTC 59.630 55.000 0.00 0.00 0.00 3.95
64 65 0.739813 AGGTATGCTTGCGACGTTCC 60.740 55.000 0.00 0.00 0.00 3.62
65 66 1.017177 GGTATGCTTGCGACGTTCCA 61.017 55.000 0.00 0.00 0.00 3.53
66 67 0.370273 GTATGCTTGCGACGTTCCAG 59.630 55.000 0.00 0.00 0.00 3.86
67 68 0.245266 TATGCTTGCGACGTTCCAGA 59.755 50.000 0.00 0.00 0.00 3.86
68 69 1.016130 ATGCTTGCGACGTTCCAGAG 61.016 55.000 0.00 0.00 0.00 3.35
69 70 1.664965 GCTTGCGACGTTCCAGAGT 60.665 57.895 0.00 0.00 0.00 3.24
70 71 1.891060 GCTTGCGACGTTCCAGAGTG 61.891 60.000 0.00 0.00 0.00 3.51
71 72 1.891060 CTTGCGACGTTCCAGAGTGC 61.891 60.000 0.00 0.00 0.00 4.40
72 73 2.355837 GCGACGTTCCAGAGTGCA 60.356 61.111 0.00 0.00 0.00 4.57
73 74 2.375766 GCGACGTTCCAGAGTGCAG 61.376 63.158 0.00 0.00 0.00 4.41
74 75 1.734477 CGACGTTCCAGAGTGCAGG 60.734 63.158 0.00 0.00 0.00 4.85
75 76 1.367840 GACGTTCCAGAGTGCAGGT 59.632 57.895 0.00 0.00 0.00 4.00
76 77 0.946221 GACGTTCCAGAGTGCAGGTG 60.946 60.000 0.00 0.00 0.00 4.00
77 78 2.320587 CGTTCCAGAGTGCAGGTGC 61.321 63.158 0.00 0.00 42.50 5.01
90 91 3.755628 GGTGCAGCGGGACTCGTA 61.756 66.667 8.56 0.00 41.72 3.43
91 92 2.506438 GTGCAGCGGGACTCGTAC 60.506 66.667 0.32 0.00 41.72 3.67
92 93 2.675423 TGCAGCGGGACTCGTACT 60.675 61.111 0.00 0.00 41.72 2.73
93 94 1.377594 TGCAGCGGGACTCGTACTA 60.378 57.895 0.00 0.00 41.72 1.82
94 95 0.750546 TGCAGCGGGACTCGTACTAT 60.751 55.000 0.00 0.00 41.72 2.12
95 96 1.233019 GCAGCGGGACTCGTACTATA 58.767 55.000 0.00 0.00 41.72 1.31
96 97 1.069364 GCAGCGGGACTCGTACTATAC 60.069 57.143 0.00 0.00 41.72 1.47
97 98 2.492012 CAGCGGGACTCGTACTATACT 58.508 52.381 0.00 0.00 41.72 2.12
98 99 2.479656 CAGCGGGACTCGTACTATACTC 59.520 54.545 0.00 0.00 41.72 2.59
99 100 2.368221 AGCGGGACTCGTACTATACTCT 59.632 50.000 0.00 0.00 41.72 3.24
100 101 2.479656 GCGGGACTCGTACTATACTCTG 59.520 54.545 0.00 0.00 41.72 3.35
101 102 2.479656 CGGGACTCGTACTATACTCTGC 59.520 54.545 0.00 0.00 0.00 4.26
102 103 2.813172 GGGACTCGTACTATACTCTGCC 59.187 54.545 0.00 0.00 0.00 4.85
103 104 3.474600 GGACTCGTACTATACTCTGCCA 58.525 50.000 0.00 0.00 0.00 4.92
104 105 4.073549 GGACTCGTACTATACTCTGCCAT 58.926 47.826 0.00 0.00 0.00 4.40
105 106 4.083217 GGACTCGTACTATACTCTGCCATG 60.083 50.000 0.00 0.00 0.00 3.66
106 107 3.253677 ACTCGTACTATACTCTGCCATGC 59.746 47.826 0.00 0.00 0.00 4.06
107 108 3.219281 TCGTACTATACTCTGCCATGCA 58.781 45.455 0.00 0.00 36.92 3.96
108 109 3.004419 TCGTACTATACTCTGCCATGCAC 59.996 47.826 0.00 0.00 33.79 4.57
109 110 2.918712 ACTATACTCTGCCATGCACC 57.081 50.000 0.00 0.00 33.79 5.01
110 111 2.402564 ACTATACTCTGCCATGCACCT 58.597 47.619 0.00 0.00 33.79 4.00
128 129 0.387239 CTTTTTACAGGCACGCAGGC 60.387 55.000 0.00 0.00 44.61 4.85
362 366 2.159156 TGTAGTGTAATGTAGGCCTGCG 60.159 50.000 17.99 0.00 0.00 5.18
407 411 1.301716 GCCAGTTCGACTCCAGCAA 60.302 57.895 0.00 0.00 0.00 3.91
492 498 0.175760 TCAGTTCAGATACGCCCTGC 59.824 55.000 0.00 0.00 0.00 4.85
493 499 0.811616 CAGTTCAGATACGCCCTGCC 60.812 60.000 0.00 0.00 0.00 4.85
494 500 1.523938 GTTCAGATACGCCCTGCCC 60.524 63.158 0.00 0.00 0.00 5.36
495 501 2.742116 TTCAGATACGCCCTGCCCC 61.742 63.158 0.00 0.00 0.00 5.80
496 502 3.164269 CAGATACGCCCTGCCCCT 61.164 66.667 0.00 0.00 0.00 4.79
497 503 3.164269 AGATACGCCCTGCCCCTG 61.164 66.667 0.00 0.00 0.00 4.45
586 592 7.362662 CAACTTGACAGCATAATAAACACTGT 58.637 34.615 0.00 0.00 43.93 3.55
587 593 7.510549 ACTTGACAGCATAATAAACACTGTT 57.489 32.000 0.00 0.00 41.45 3.16
666 681 2.276201 GACCAGCGCAACACATATACA 58.724 47.619 11.47 0.00 0.00 2.29
667 682 2.279741 ACCAGCGCAACACATATACAG 58.720 47.619 11.47 0.00 0.00 2.74
669 684 1.003545 CAGCGCAACACATATACAGCC 60.004 52.381 11.47 0.00 0.00 4.85
670 685 1.013596 GCGCAACACATATACAGCCA 58.986 50.000 0.30 0.00 0.00 4.75
683 706 3.255397 AGCCACCCAGCTGAGCTT 61.255 61.111 17.39 0.00 42.95 3.74
684 707 3.060615 GCCACCCAGCTGAGCTTG 61.061 66.667 17.39 0.00 36.40 4.01
685 708 3.060615 CCACCCAGCTGAGCTTGC 61.061 66.667 17.39 4.72 36.40 4.01
744 767 3.170933 GCACGAGCTGAGCTGTTAAGC 62.171 57.143 13.71 4.88 43.36 3.09
803 833 3.126686 GCTCAAGCCACAATCTCTTCTTC 59.873 47.826 0.00 0.00 34.31 2.87
816 846 8.628280 ACAATCTCTTCTTCTCCTTTGAAAAAG 58.372 33.333 0.00 0.00 0.00 2.27
817 847 6.625873 TCTCTTCTTCTCCTTTGAAAAAGC 57.374 37.500 0.00 0.00 0.00 3.51
818 848 6.122277 TCTCTTCTTCTCCTTTGAAAAAGCA 58.878 36.000 0.00 0.00 0.00 3.91
819 849 6.038714 TCTCTTCTTCTCCTTTGAAAAAGCAC 59.961 38.462 0.00 0.00 0.00 4.40
820 850 4.552166 TCTTCTCCTTTGAAAAAGCACG 57.448 40.909 0.00 0.00 0.00 5.34
821 851 4.196193 TCTTCTCCTTTGAAAAAGCACGA 58.804 39.130 0.00 0.00 0.00 4.35
822 852 4.821805 TCTTCTCCTTTGAAAAAGCACGAT 59.178 37.500 0.00 0.00 0.00 3.73
945 985 4.831307 CGCCTTCGTCCCGTCTCG 62.831 72.222 0.00 0.00 0.00 4.04
946 986 3.745803 GCCTTCGTCCCGTCTCGT 61.746 66.667 0.00 0.00 0.00 4.18
948 988 1.427020 CCTTCGTCCCGTCTCGTAC 59.573 63.158 0.00 0.00 0.00 3.67
960 1011 3.119602 CCGTCTCGTACCAATCTTCTTCA 60.120 47.826 0.00 0.00 0.00 3.02
1163 1229 3.184683 CGCCGAGCAGAAGACAGC 61.185 66.667 0.00 0.00 0.00 4.40
1164 1230 3.184683 GCCGAGCAGAAGACAGCG 61.185 66.667 0.00 0.00 33.76 5.18
1281 1356 3.793144 CGGCAGCGCTGGAAGAAC 61.793 66.667 36.47 19.52 34.07 3.01
1284 1359 2.394563 GCAGCGCTGGAAGAACCTC 61.395 63.158 36.47 14.40 39.86 3.85
1290 1365 2.602267 TGGAAGAACCTCGGCGGA 60.602 61.111 7.21 0.00 39.86 5.54
1348 1423 4.329545 GGTGGAAGCGGCTGTCCA 62.330 66.667 21.91 21.91 41.72 4.02
1443 1518 2.980233 GTGCTTGGTCTGGCGCTT 60.980 61.111 7.64 0.00 36.23 4.68
1554 1631 1.662122 GGGCGTGTAATCTTTGTACCG 59.338 52.381 0.00 0.00 0.00 4.02
1555 1632 2.340337 GGCGTGTAATCTTTGTACCGT 58.660 47.619 0.00 0.00 0.00 4.83
1581 1678 9.391006 TCGTCCTTGTTTATTTAAGATGCTTAT 57.609 29.630 0.00 0.00 0.00 1.73
1651 1748 3.600388 GTCGATCTTGTTGGACTCCATT 58.400 45.455 0.00 0.00 31.53 3.16
1652 1749 3.372206 GTCGATCTTGTTGGACTCCATTG 59.628 47.826 0.00 0.00 31.53 2.82
1653 1750 2.096496 CGATCTTGTTGGACTCCATTGC 59.904 50.000 0.00 0.00 31.53 3.56
1654 1751 2.655090 TCTTGTTGGACTCCATTGCA 57.345 45.000 0.00 0.00 31.53 4.08
1655 1752 3.159213 TCTTGTTGGACTCCATTGCAT 57.841 42.857 0.00 0.00 31.53 3.96
1656 1753 2.821378 TCTTGTTGGACTCCATTGCATG 59.179 45.455 0.00 2.33 31.53 4.06
1657 1754 2.291209 TGTTGGACTCCATTGCATGT 57.709 45.000 0.00 0.00 31.53 3.21
1658 1755 2.596346 TGTTGGACTCCATTGCATGTT 58.404 42.857 0.00 0.00 31.53 2.71
1659 1756 2.557924 TGTTGGACTCCATTGCATGTTC 59.442 45.455 0.00 0.00 31.53 3.18
1660 1757 2.821969 GTTGGACTCCATTGCATGTTCT 59.178 45.455 0.00 0.00 31.53 3.01
1661 1758 3.159213 TGGACTCCATTGCATGTTCTT 57.841 42.857 0.00 0.00 0.00 2.52
1662 1759 4.299586 TGGACTCCATTGCATGTTCTTA 57.700 40.909 0.00 0.00 0.00 2.10
1779 1889 8.440833 AGAACGTTTTTGATATTAGTGTAGTGC 58.559 33.333 0.46 0.00 0.00 4.40
1780 1890 7.068692 ACGTTTTTGATATTAGTGTAGTGCC 57.931 36.000 0.00 0.00 0.00 5.01
1781 1891 6.651643 ACGTTTTTGATATTAGTGTAGTGCCA 59.348 34.615 0.00 0.00 0.00 4.92
1782 1892 7.173562 ACGTTTTTGATATTAGTGTAGTGCCAA 59.826 33.333 0.00 0.00 0.00 4.52
1783 1893 8.018520 CGTTTTTGATATTAGTGTAGTGCCAAA 58.981 33.333 0.00 0.00 0.00 3.28
1784 1894 9.685828 GTTTTTGATATTAGTGTAGTGCCAAAA 57.314 29.630 0.00 0.00 31.70 2.44
1787 1897 9.853555 TTTGATATTAGTGTAGTGCCAAAAATG 57.146 29.630 0.00 0.00 0.00 2.32
1788 1898 8.574251 TGATATTAGTGTAGTGCCAAAAATGT 57.426 30.769 0.00 0.00 0.00 2.71
1789 1899 9.019656 TGATATTAGTGTAGTGCCAAAAATGTT 57.980 29.630 0.00 0.00 0.00 2.71
1790 1900 9.503427 GATATTAGTGTAGTGCCAAAAATGTTC 57.497 33.333 0.00 0.00 0.00 3.18
1791 1901 6.952773 TTAGTGTAGTGCCAAAAATGTTCT 57.047 33.333 0.00 0.00 0.00 3.01
1792 1902 5.852282 AGTGTAGTGCCAAAAATGTTCTT 57.148 34.783 0.00 0.00 0.00 2.52
1793 1903 6.952773 AGTGTAGTGCCAAAAATGTTCTTA 57.047 33.333 0.00 0.00 0.00 2.10
1794 1904 7.524717 AGTGTAGTGCCAAAAATGTTCTTAT 57.475 32.000 0.00 0.00 0.00 1.73
1795 1905 8.630054 AGTGTAGTGCCAAAAATGTTCTTATA 57.370 30.769 0.00 0.00 0.00 0.98
1796 1906 9.243105 AGTGTAGTGCCAAAAATGTTCTTATAT 57.757 29.630 0.00 0.00 0.00 0.86
1797 1907 9.855021 GTGTAGTGCCAAAAATGTTCTTATATT 57.145 29.630 0.00 0.00 0.00 1.28
1802 1912 9.260002 GTGCCAAAAATGTTCTTATATTATGGG 57.740 33.333 0.00 0.00 29.84 4.00
1803 1913 9.206690 TGCCAAAAATGTTCTTATATTATGGGA 57.793 29.630 0.00 0.00 29.84 4.37
1804 1914 9.476202 GCCAAAAATGTTCTTATATTATGGGAC 57.524 33.333 0.00 0.00 29.84 4.46
1805 1915 9.677567 CCAAAAATGTTCTTATATTATGGGACG 57.322 33.333 0.00 0.00 0.00 4.79
1825 1935 2.976509 CGAAGTGAGTATGATGCTAGCG 59.023 50.000 10.77 0.00 0.00 4.26
1851 1961 1.267532 CGAGCGTGCATGTTAATGGTC 60.268 52.381 7.93 0.98 34.09 4.02
1858 1968 1.670811 GCATGTTAATGGTCACCCTCG 59.329 52.381 0.00 0.00 34.09 4.63
1860 1970 0.035820 TGTTAATGGTCACCCTCGCC 60.036 55.000 0.00 0.00 0.00 5.54
1887 1997 3.050275 GGTCTCGCGCAAAGGCTT 61.050 61.111 8.75 0.00 38.10 4.35
1890 2000 0.317854 GTCTCGCGCAAAGGCTTTTT 60.318 50.000 10.36 0.00 38.10 1.94
1920 2030 0.685097 ATGACACGTTACACCCTGCT 59.315 50.000 0.00 0.00 0.00 4.24
1935 2045 9.860650 TTACACCCTGCTGTATCAAATTATTAT 57.139 29.630 0.00 0.00 0.00 1.28
1936 2046 8.766994 ACACCCTGCTGTATCAAATTATTATT 57.233 30.769 0.00 0.00 0.00 1.40
1937 2047 9.860650 ACACCCTGCTGTATCAAATTATTATTA 57.139 29.630 0.00 0.00 0.00 0.98
1951 2061 8.915654 CAAATTATTATTATTCCTTTCTGCGGC 58.084 33.333 0.00 0.00 0.00 6.53
1952 2062 7.759489 ATTATTATTATTCCTTTCTGCGGCA 57.241 32.000 1.29 1.29 0.00 5.69
1953 2063 7.575414 TTATTATTATTCCTTTCTGCGGCAA 57.425 32.000 3.44 0.00 0.00 4.52
1954 2064 6.655078 ATTATTATTCCTTTCTGCGGCAAT 57.345 33.333 3.44 0.00 0.00 3.56
1955 2065 3.781079 TTATTCCTTTCTGCGGCAATG 57.219 42.857 3.44 0.00 0.00 2.82
1956 2066 1.838112 ATTCCTTTCTGCGGCAATGA 58.162 45.000 3.44 0.00 0.00 2.57
1957 2067 1.167851 TTCCTTTCTGCGGCAATGAG 58.832 50.000 3.44 1.73 0.00 2.90
1958 2068 0.677731 TCCTTTCTGCGGCAATGAGG 60.678 55.000 15.27 15.27 0.00 3.86
1959 2069 1.660560 CCTTTCTGCGGCAATGAGGG 61.661 60.000 3.44 0.00 0.00 4.30
1960 2070 2.275547 CTTTCTGCGGCAATGAGGGC 62.276 60.000 3.44 0.00 0.00 5.19
1961 2071 2.769652 TTTCTGCGGCAATGAGGGCT 62.770 55.000 3.44 0.00 0.00 5.19
1962 2072 1.909459 TTCTGCGGCAATGAGGGCTA 61.909 55.000 3.44 0.00 0.00 3.93
1963 2073 1.228063 CTGCGGCAATGAGGGCTAT 60.228 57.895 3.44 0.00 0.00 2.97
1964 2074 1.227943 TGCGGCAATGAGGGCTATC 60.228 57.895 0.00 0.00 0.00 2.08
1965 2075 1.227943 GCGGCAATGAGGGCTATCA 60.228 57.895 0.00 0.00 0.00 2.15
1966 2076 0.819259 GCGGCAATGAGGGCTATCAA 60.819 55.000 0.00 0.00 31.76 2.57
1967 2077 1.679139 CGGCAATGAGGGCTATCAAA 58.321 50.000 0.00 0.00 31.76 2.69
1968 2078 2.233271 CGGCAATGAGGGCTATCAAAT 58.767 47.619 0.00 0.00 31.76 2.32
1969 2079 2.624838 CGGCAATGAGGGCTATCAAATT 59.375 45.455 0.00 0.00 31.76 1.82
1970 2080 3.304928 CGGCAATGAGGGCTATCAAATTC 60.305 47.826 0.00 0.00 31.76 2.17
1971 2081 3.893813 GGCAATGAGGGCTATCAAATTCT 59.106 43.478 0.00 0.00 31.76 2.40
1972 2082 4.261909 GGCAATGAGGGCTATCAAATTCTG 60.262 45.833 0.00 0.00 31.76 3.02
1973 2083 4.340381 GCAATGAGGGCTATCAAATTCTGT 59.660 41.667 0.00 0.00 31.76 3.41
1974 2084 5.163478 GCAATGAGGGCTATCAAATTCTGTT 60.163 40.000 0.00 0.00 31.76 3.16
1975 2085 6.501781 CAATGAGGGCTATCAAATTCTGTTC 58.498 40.000 0.00 0.00 31.76 3.18
1976 2086 4.191544 TGAGGGCTATCAAATTCTGTTCG 58.808 43.478 0.00 0.00 0.00 3.95
1977 2087 4.081142 TGAGGGCTATCAAATTCTGTTCGA 60.081 41.667 0.00 0.00 0.00 3.71
1978 2088 5.041191 AGGGCTATCAAATTCTGTTCGAT 57.959 39.130 0.00 0.00 0.00 3.59
1979 2089 5.059833 AGGGCTATCAAATTCTGTTCGATC 58.940 41.667 0.00 0.00 0.00 3.69
1980 2090 4.214332 GGGCTATCAAATTCTGTTCGATCC 59.786 45.833 0.00 0.00 0.00 3.36
1981 2091 4.816385 GGCTATCAAATTCTGTTCGATCCA 59.184 41.667 0.00 0.00 0.00 3.41
1982 2092 5.471456 GGCTATCAAATTCTGTTCGATCCAT 59.529 40.000 0.00 0.00 0.00 3.41
1983 2093 6.650807 GGCTATCAAATTCTGTTCGATCCATA 59.349 38.462 0.00 0.00 0.00 2.74
1984 2094 7.148507 GGCTATCAAATTCTGTTCGATCCATAG 60.149 40.741 0.00 0.00 0.00 2.23
1985 2095 7.386299 GCTATCAAATTCTGTTCGATCCATAGT 59.614 37.037 0.00 0.00 0.00 2.12
1986 2096 9.914131 CTATCAAATTCTGTTCGATCCATAGTA 57.086 33.333 0.00 0.00 0.00 1.82
1988 2098 8.648557 TCAAATTCTGTTCGATCCATAGTAAG 57.351 34.615 0.00 0.00 0.00 2.34
1989 2099 7.710907 TCAAATTCTGTTCGATCCATAGTAAGG 59.289 37.037 0.00 0.00 0.00 2.69
1990 2100 5.531122 TTCTGTTCGATCCATAGTAAGGG 57.469 43.478 0.00 0.00 0.00 3.95
1991 2101 3.895656 TCTGTTCGATCCATAGTAAGGGG 59.104 47.826 0.00 0.00 0.00 4.79
1992 2102 3.895656 CTGTTCGATCCATAGTAAGGGGA 59.104 47.826 0.00 0.00 34.70 4.81
1993 2103 4.291792 TGTTCGATCCATAGTAAGGGGAA 58.708 43.478 0.00 0.00 33.73 3.97
1994 2104 4.100498 TGTTCGATCCATAGTAAGGGGAAC 59.900 45.833 12.77 12.77 33.73 3.62
1995 2105 3.918566 TCGATCCATAGTAAGGGGAACA 58.081 45.455 0.00 0.00 33.73 3.18
1996 2106 3.895656 TCGATCCATAGTAAGGGGAACAG 59.104 47.826 0.00 0.00 33.73 3.16
1997 2107 3.006967 CGATCCATAGTAAGGGGAACAGG 59.993 52.174 0.00 0.00 33.73 4.00
1998 2108 3.502051 TCCATAGTAAGGGGAACAGGT 57.498 47.619 0.00 0.00 0.00 4.00
1999 2109 3.810623 TCCATAGTAAGGGGAACAGGTT 58.189 45.455 0.00 0.00 0.00 3.50
2000 2110 3.778629 TCCATAGTAAGGGGAACAGGTTC 59.221 47.826 3.58 3.58 38.80 3.62
2001 2111 3.780850 CCATAGTAAGGGGAACAGGTTCT 59.219 47.826 11.56 0.00 39.45 3.01
2002 2112 4.384208 CCATAGTAAGGGGAACAGGTTCTG 60.384 50.000 11.56 0.00 39.45 3.02
2003 2113 2.986050 AGTAAGGGGAACAGGTTCTGA 58.014 47.619 11.56 0.00 39.45 3.27
2004 2114 3.323775 AGTAAGGGGAACAGGTTCTGAA 58.676 45.455 11.56 0.00 39.45 3.02
2005 2115 3.720002 AGTAAGGGGAACAGGTTCTGAAA 59.280 43.478 11.56 0.00 39.45 2.69
2006 2116 3.680777 AAGGGGAACAGGTTCTGAAAA 57.319 42.857 11.56 0.00 39.45 2.29
2007 2117 3.680777 AGGGGAACAGGTTCTGAAAAA 57.319 42.857 11.56 0.00 39.45 1.94
2031 2141 9.942850 AAAATTCAAAGATATCGGATTTTTGGT 57.057 25.926 17.22 6.91 31.47 3.67
2032 2142 8.931385 AATTCAAAGATATCGGATTTTTGGTG 57.069 30.769 12.07 3.29 31.47 4.17
2033 2143 6.449635 TCAAAGATATCGGATTTTTGGTGG 57.550 37.500 12.07 0.00 31.47 4.61
2034 2144 5.359576 TCAAAGATATCGGATTTTTGGTGGG 59.640 40.000 12.07 0.00 31.47 4.61
2035 2145 4.519906 AGATATCGGATTTTTGGTGGGT 57.480 40.909 0.00 0.00 0.00 4.51
2036 2146 4.461198 AGATATCGGATTTTTGGTGGGTC 58.539 43.478 0.00 0.00 0.00 4.46
2037 2147 2.899303 ATCGGATTTTTGGTGGGTCT 57.101 45.000 0.00 0.00 0.00 3.85
2038 2148 1.904287 TCGGATTTTTGGTGGGTCTG 58.096 50.000 0.00 0.00 0.00 3.51
2039 2149 1.144093 TCGGATTTTTGGTGGGTCTGT 59.856 47.619 0.00 0.00 0.00 3.41
2040 2150 1.539827 CGGATTTTTGGTGGGTCTGTC 59.460 52.381 0.00 0.00 0.00 3.51
2041 2151 2.593026 GGATTTTTGGTGGGTCTGTCA 58.407 47.619 0.00 0.00 0.00 3.58
2042 2152 3.165071 GGATTTTTGGTGGGTCTGTCAT 58.835 45.455 0.00 0.00 0.00 3.06
2043 2153 3.578282 GGATTTTTGGTGGGTCTGTCATT 59.422 43.478 0.00 0.00 0.00 2.57
2044 2154 4.321974 GGATTTTTGGTGGGTCTGTCATTC 60.322 45.833 0.00 0.00 0.00 2.67
2045 2155 3.593442 TTTTGGTGGGTCTGTCATTCT 57.407 42.857 0.00 0.00 0.00 2.40
2046 2156 3.593442 TTTGGTGGGTCTGTCATTCTT 57.407 42.857 0.00 0.00 0.00 2.52
2047 2157 3.593442 TTGGTGGGTCTGTCATTCTTT 57.407 42.857 0.00 0.00 0.00 2.52
2048 2158 3.140325 TGGTGGGTCTGTCATTCTTTC 57.860 47.619 0.00 0.00 0.00 2.62
2049 2159 2.711009 TGGTGGGTCTGTCATTCTTTCT 59.289 45.455 0.00 0.00 0.00 2.52
2050 2160 3.077359 GGTGGGTCTGTCATTCTTTCTG 58.923 50.000 0.00 0.00 0.00 3.02
2051 2161 3.496870 GGTGGGTCTGTCATTCTTTCTGT 60.497 47.826 0.00 0.00 0.00 3.41
2052 2162 3.748568 GTGGGTCTGTCATTCTTTCTGTC 59.251 47.826 0.00 0.00 0.00 3.51
2053 2163 3.390967 TGGGTCTGTCATTCTTTCTGTCA 59.609 43.478 0.00 0.00 0.00 3.58
2054 2164 3.999663 GGGTCTGTCATTCTTTCTGTCAG 59.000 47.826 0.00 0.00 33.05 3.51
2055 2165 4.503991 GGGTCTGTCATTCTTTCTGTCAGT 60.504 45.833 0.00 0.00 33.38 3.41
2056 2166 5.059833 GGTCTGTCATTCTTTCTGTCAGTT 58.940 41.667 0.00 0.00 33.38 3.16
2057 2167 5.049818 GGTCTGTCATTCTTTCTGTCAGTTG 60.050 44.000 0.00 0.00 33.38 3.16
2058 2168 5.755375 GTCTGTCATTCTTTCTGTCAGTTGA 59.245 40.000 0.00 0.00 33.38 3.18
2059 2169 5.755375 TCTGTCATTCTTTCTGTCAGTTGAC 59.245 40.000 5.33 5.33 44.97 3.18
2060 2170 5.674525 TGTCATTCTTTCTGTCAGTTGACT 58.325 37.500 12.97 0.00 44.99 3.41
2061 2171 6.816136 TGTCATTCTTTCTGTCAGTTGACTA 58.184 36.000 12.97 0.00 44.99 2.59
2062 2172 7.272244 TGTCATTCTTTCTGTCAGTTGACTAA 58.728 34.615 12.97 5.44 44.99 2.24
2063 2173 7.439356 TGTCATTCTTTCTGTCAGTTGACTAAG 59.561 37.037 12.97 12.48 44.99 2.18
2064 2174 7.653713 GTCATTCTTTCTGTCAGTTGACTAAGA 59.346 37.037 12.97 14.11 44.99 2.10
2065 2175 8.370940 TCATTCTTTCTGTCAGTTGACTAAGAT 58.629 33.333 12.97 7.27 44.99 2.40
2066 2176 8.997323 CATTCTTTCTGTCAGTTGACTAAGATT 58.003 33.333 12.97 11.35 44.99 2.40
2067 2177 8.964476 TTCTTTCTGTCAGTTGACTAAGATTT 57.036 30.769 12.97 0.00 44.99 2.17
2071 2181 9.607988 TTTCTGTCAGTTGACTAAGATTTAACA 57.392 29.630 12.97 0.00 44.99 2.41
2072 2182 9.607988 TTCTGTCAGTTGACTAAGATTTAACAA 57.392 29.630 12.97 0.00 44.99 2.83
2073 2183 9.607988 TCTGTCAGTTGACTAAGATTTAACAAA 57.392 29.630 12.97 0.00 44.99 2.83
2074 2184 9.869844 CTGTCAGTTGACTAAGATTTAACAAAG 57.130 33.333 12.97 0.00 44.99 2.77
2075 2185 9.391006 TGTCAGTTGACTAAGATTTAACAAAGT 57.609 29.630 12.97 0.00 44.99 2.66
2076 2186 9.865484 GTCAGTTGACTAAGATTTAACAAAGTC 57.135 33.333 5.04 0.00 41.65 3.01
2077 2187 9.832445 TCAGTTGACTAAGATTTAACAAAGTCT 57.168 29.630 0.00 0.00 35.50 3.24
2135 2245 9.720769 TCTAGAAAGAAAATTTTACACGGATCT 57.279 29.630 2.75 4.26 0.00 2.75
2136 2246 9.974750 CTAGAAAGAAAATTTTACACGGATCTC 57.025 33.333 2.75 0.00 0.00 2.75
2137 2247 7.817641 AGAAAGAAAATTTTACACGGATCTCC 58.182 34.615 2.75 0.00 0.00 3.71
2138 2248 7.447238 AGAAAGAAAATTTTACACGGATCTCCA 59.553 33.333 2.75 0.00 35.14 3.86
2139 2249 7.703058 AAGAAAATTTTACACGGATCTCCAT 57.297 32.000 2.75 0.00 35.14 3.41
2140 2250 7.088589 AGAAAATTTTACACGGATCTCCATG 57.911 36.000 2.75 0.00 34.93 3.66
2141 2251 4.900635 AATTTTACACGGATCTCCATGC 57.099 40.909 0.00 0.00 31.24 4.06
2142 2252 3.342377 TTTTACACGGATCTCCATGCA 57.658 42.857 0.00 0.00 31.24 3.96
2143 2253 3.342377 TTTACACGGATCTCCATGCAA 57.658 42.857 0.00 0.00 31.24 4.08
2144 2254 2.602257 TACACGGATCTCCATGCAAG 57.398 50.000 0.00 0.00 31.24 4.01
2145 2255 0.904649 ACACGGATCTCCATGCAAGA 59.095 50.000 0.00 0.00 31.24 3.02
2146 2256 1.293924 CACGGATCTCCATGCAAGAC 58.706 55.000 0.00 0.00 35.14 3.01
2147 2257 0.179100 ACGGATCTCCATGCAAGACG 60.179 55.000 0.00 0.00 35.14 4.18
2148 2258 0.103026 CGGATCTCCATGCAAGACGA 59.897 55.000 0.00 0.00 35.14 4.20
2149 2259 1.576356 GGATCTCCATGCAAGACGAC 58.424 55.000 0.00 0.00 35.64 4.34
2150 2260 1.137872 GGATCTCCATGCAAGACGACT 59.862 52.381 0.00 0.00 35.64 4.18
2151 2261 2.200067 GATCTCCATGCAAGACGACTG 58.800 52.381 0.00 0.00 0.00 3.51
2152 2262 1.256812 TCTCCATGCAAGACGACTGA 58.743 50.000 0.00 0.00 0.00 3.41
2153 2263 1.203287 TCTCCATGCAAGACGACTGAG 59.797 52.381 0.00 0.00 0.00 3.35
2154 2264 1.203287 CTCCATGCAAGACGACTGAGA 59.797 52.381 0.00 0.00 0.00 3.27
2155 2265 1.067565 TCCATGCAAGACGACTGAGAC 60.068 52.381 0.00 0.00 0.00 3.36
2156 2266 1.337167 CCATGCAAGACGACTGAGACA 60.337 52.381 0.00 0.00 0.00 3.41
2157 2267 2.614779 CATGCAAGACGACTGAGACAT 58.385 47.619 0.00 0.00 0.00 3.06
2158 2268 3.429410 CCATGCAAGACGACTGAGACATA 60.429 47.826 0.00 0.00 0.00 2.29
2159 2269 3.934457 TGCAAGACGACTGAGACATAA 57.066 42.857 0.00 0.00 0.00 1.90
2160 2270 4.456280 TGCAAGACGACTGAGACATAAT 57.544 40.909 0.00 0.00 0.00 1.28
2161 2271 4.424626 TGCAAGACGACTGAGACATAATC 58.575 43.478 0.00 0.00 0.00 1.75
2162 2272 4.082245 TGCAAGACGACTGAGACATAATCA 60.082 41.667 0.00 0.00 0.00 2.57
2163 2273 4.864806 GCAAGACGACTGAGACATAATCAA 59.135 41.667 0.00 0.00 0.00 2.57
2164 2274 5.005203 GCAAGACGACTGAGACATAATCAAG 59.995 44.000 0.00 0.00 0.00 3.02
2165 2275 5.906113 AGACGACTGAGACATAATCAAGT 57.094 39.130 0.00 0.00 31.11 3.16
2166 2276 5.885881 AGACGACTGAGACATAATCAAGTC 58.114 41.667 0.00 0.00 38.79 3.01
2175 2285 5.885881 AGACATAATCAAGTCTCAGTCGAC 58.114 41.667 7.70 7.70 40.96 4.20
2176 2286 5.650266 AGACATAATCAAGTCTCAGTCGACT 59.350 40.000 13.58 13.58 45.73 4.18
2177 2287 6.824196 AGACATAATCAAGTCTCAGTCGACTA 59.176 38.462 19.57 0.00 43.14 2.59
2178 2288 7.337184 AGACATAATCAAGTCTCAGTCGACTAA 59.663 37.037 19.57 1.94 43.14 2.24
2179 2289 7.476667 ACATAATCAAGTCTCAGTCGACTAAG 58.523 38.462 19.57 14.47 43.14 2.18
2180 2290 7.337184 ACATAATCAAGTCTCAGTCGACTAAGA 59.663 37.037 19.57 17.01 43.14 2.10
2181 2291 6.767524 AATCAAGTCTCAGTCGACTAAGAT 57.232 37.500 21.21 3.80 43.14 2.40
2182 2292 6.767524 ATCAAGTCTCAGTCGACTAAGATT 57.232 37.500 21.21 14.59 43.14 2.40
2183 2293 6.576662 TCAAGTCTCAGTCGACTAAGATTT 57.423 37.500 21.21 19.56 43.14 2.17
2184 2294 7.683437 TCAAGTCTCAGTCGACTAAGATTTA 57.317 36.000 22.05 10.92 43.14 1.40
2185 2295 7.753659 TCAAGTCTCAGTCGACTAAGATTTAG 58.246 38.462 22.05 16.82 43.14 1.85
2186 2296 6.126568 AGTCTCAGTCGACTAAGATTTAGC 57.873 41.667 21.21 8.30 42.19 3.09
2187 2297 5.648526 AGTCTCAGTCGACTAAGATTTAGCA 59.351 40.000 21.21 0.00 42.19 3.49
2188 2298 6.151312 AGTCTCAGTCGACTAAGATTTAGCAA 59.849 38.462 21.21 0.00 42.19 3.91
2189 2299 6.975772 GTCTCAGTCGACTAAGATTTAGCAAT 59.024 38.462 21.21 0.00 0.00 3.56
2190 2300 6.975197 TCTCAGTCGACTAAGATTTAGCAATG 59.025 38.462 19.57 1.30 0.00 2.82
2191 2301 5.520288 TCAGTCGACTAAGATTTAGCAATGC 59.480 40.000 19.57 0.00 0.00 3.56
2192 2302 5.521735 CAGTCGACTAAGATTTAGCAATGCT 59.478 40.000 19.57 13.92 43.41 3.79
2193 2303 5.521735 AGTCGACTAAGATTTAGCAATGCTG 59.478 40.000 18.46 0.25 40.10 4.41
2194 2304 5.520288 GTCGACTAAGATTTAGCAATGCTGA 59.480 40.000 19.25 6.85 40.10 4.26
2195 2305 6.201806 GTCGACTAAGATTTAGCAATGCTGAT 59.798 38.462 19.25 11.65 40.10 2.90
2196 2306 7.382488 GTCGACTAAGATTTAGCAATGCTGATA 59.618 37.037 19.25 3.03 40.10 2.15
2197 2307 7.926018 TCGACTAAGATTTAGCAATGCTGATAA 59.074 33.333 19.25 9.64 40.10 1.75
2198 2308 8.715998 CGACTAAGATTTAGCAATGCTGATAAT 58.284 33.333 19.25 13.89 40.10 1.28
2226 2336 9.846248 AAACATCTATTGAAGTTATGTGCTTTC 57.154 29.630 0.00 0.00 33.64 2.62
2227 2337 8.565896 ACATCTATTGAAGTTATGTGCTTTCA 57.434 30.769 0.00 0.00 29.93 2.69
2228 2338 9.182214 ACATCTATTGAAGTTATGTGCTTTCAT 57.818 29.630 0.00 0.00 29.93 2.57
2234 2344 9.768662 ATTGAAGTTATGTGCTTTCATTTTCTT 57.231 25.926 0.00 0.00 0.00 2.52
2235 2345 9.598517 TTGAAGTTATGTGCTTTCATTTTCTTT 57.401 25.926 0.00 0.00 0.00 2.52
2236 2346 9.033481 TGAAGTTATGTGCTTTCATTTTCTTTG 57.967 29.630 0.00 0.00 0.00 2.77
2237 2347 8.947055 AAGTTATGTGCTTTCATTTTCTTTGT 57.053 26.923 0.00 0.00 0.00 2.83
2238 2348 8.947055 AGTTATGTGCTTTCATTTTCTTTGTT 57.053 26.923 0.00 0.00 0.00 2.83
2239 2349 9.034544 AGTTATGTGCTTTCATTTTCTTTGTTC 57.965 29.630 0.00 0.00 0.00 3.18
2240 2350 5.947503 TGTGCTTTCATTTTCTTTGTTCG 57.052 34.783 0.00 0.00 0.00 3.95
2241 2351 5.406649 TGTGCTTTCATTTTCTTTGTTCGT 58.593 33.333 0.00 0.00 0.00 3.85
2242 2352 5.866633 TGTGCTTTCATTTTCTTTGTTCGTT 59.133 32.000 0.00 0.00 0.00 3.85
2243 2353 7.030165 TGTGCTTTCATTTTCTTTGTTCGTTA 58.970 30.769 0.00 0.00 0.00 3.18
2244 2354 7.704472 TGTGCTTTCATTTTCTTTGTTCGTTAT 59.296 29.630 0.00 0.00 0.00 1.89
2245 2355 8.539674 GTGCTTTCATTTTCTTTGTTCGTTATT 58.460 29.630 0.00 0.00 0.00 1.40
2246 2356 9.092876 TGCTTTCATTTTCTTTGTTCGTTATTT 57.907 25.926 0.00 0.00 0.00 1.40
2247 2357 9.914923 GCTTTCATTTTCTTTGTTCGTTATTTT 57.085 25.926 0.00 0.00 0.00 1.82
2251 2361 8.324567 TCATTTTCTTTGTTCGTTATTTTGTGC 58.675 29.630 0.00 0.00 0.00 4.57
2252 2362 7.820044 TTTTCTTTGTTCGTTATTTTGTGCT 57.180 28.000 0.00 0.00 0.00 4.40
2253 2363 8.912787 TTTTCTTTGTTCGTTATTTTGTGCTA 57.087 26.923 0.00 0.00 0.00 3.49
2254 2364 8.555166 TTTCTTTGTTCGTTATTTTGTGCTAG 57.445 30.769 0.00 0.00 0.00 3.42
2255 2365 7.485418 TCTTTGTTCGTTATTTTGTGCTAGA 57.515 32.000 0.00 0.00 0.00 2.43
2256 2366 7.921787 TCTTTGTTCGTTATTTTGTGCTAGAA 58.078 30.769 0.00 0.00 0.00 2.10
2257 2367 7.853929 TCTTTGTTCGTTATTTTGTGCTAGAAC 59.146 33.333 0.00 0.00 37.73 3.01
2258 2368 6.854496 TGTTCGTTATTTTGTGCTAGAACT 57.146 33.333 1.64 0.00 37.98 3.01
2259 2369 7.949903 TGTTCGTTATTTTGTGCTAGAACTA 57.050 32.000 1.64 0.00 37.98 2.24
2260 2370 8.014322 TGTTCGTTATTTTGTGCTAGAACTAG 57.986 34.615 1.64 4.67 37.98 2.57
2261 2371 7.868922 TGTTCGTTATTTTGTGCTAGAACTAGA 59.131 33.333 12.33 0.00 37.98 2.43
2262 2372 8.706035 GTTCGTTATTTTGTGCTAGAACTAGAA 58.294 33.333 12.33 0.00 35.21 2.10
2263 2373 8.821147 TCGTTATTTTGTGCTAGAACTAGAAA 57.179 30.769 12.33 1.71 35.21 2.52
2264 2374 9.431887 TCGTTATTTTGTGCTAGAACTAGAAAT 57.568 29.630 12.33 8.58 35.21 2.17
2279 2389 9.780186 AGAACTAGAAATTTAATATTCCCTCCG 57.220 33.333 0.00 0.00 0.00 4.63
2280 2390 9.774413 GAACTAGAAATTTAATATTCCCTCCGA 57.226 33.333 0.00 0.00 0.00 4.55
2282 2392 9.945904 ACTAGAAATTTAATATTCCCTCCGATC 57.054 33.333 0.00 0.00 0.00 3.69
2283 2393 9.384764 CTAGAAATTTAATATTCCCTCCGATCC 57.615 37.037 0.00 0.00 0.00 3.36
2284 2394 7.755618 AGAAATTTAATATTCCCTCCGATCCA 58.244 34.615 0.00 0.00 0.00 3.41
2285 2395 8.394040 AGAAATTTAATATTCCCTCCGATCCAT 58.606 33.333 0.00 0.00 0.00 3.41
2286 2396 9.681062 GAAATTTAATATTCCCTCCGATCCATA 57.319 33.333 0.00 0.00 0.00 2.74
2291 2401 7.996758 AATATTCCCTCCGATCCATATTAGT 57.003 36.000 0.00 0.00 0.00 2.24
2292 2402 7.996758 ATATTCCCTCCGATCCATATTAGTT 57.003 36.000 0.00 0.00 0.00 2.24
2293 2403 9.502035 AATATTCCCTCCGATCCATATTAGTTA 57.498 33.333 0.00 0.00 0.00 2.24
2294 2404 7.996758 ATTCCCTCCGATCCATATTAGTTAT 57.003 36.000 0.00 0.00 0.00 1.89
2296 2406 8.534954 TTCCCTCCGATCCATATTAGTTATAG 57.465 38.462 0.00 0.00 0.00 1.31
2297 2407 6.550108 TCCCTCCGATCCATATTAGTTATAGC 59.450 42.308 0.00 0.00 0.00 2.97
2298 2408 6.323996 CCCTCCGATCCATATTAGTTATAGCA 59.676 42.308 0.00 0.00 0.00 3.49
2299 2409 7.429633 CCTCCGATCCATATTAGTTATAGCAG 58.570 42.308 0.00 0.00 0.00 4.24
2300 2410 6.806751 TCCGATCCATATTAGTTATAGCAGC 58.193 40.000 0.00 0.00 0.00 5.25
2301 2411 6.607600 TCCGATCCATATTAGTTATAGCAGCT 59.392 38.462 0.00 0.00 0.00 4.24
2302 2412 7.124298 TCCGATCCATATTAGTTATAGCAGCTT 59.876 37.037 0.00 0.00 0.00 3.74
2303 2413 7.766278 CCGATCCATATTAGTTATAGCAGCTTT 59.234 37.037 0.00 0.00 0.00 3.51
2304 2414 9.803315 CGATCCATATTAGTTATAGCAGCTTTA 57.197 33.333 0.00 0.00 0.00 1.85
2310 2420 9.726438 ATATTAGTTATAGCAGCTTTAGTTGGG 57.274 33.333 0.00 0.00 0.00 4.12
2311 2421 5.693769 AGTTATAGCAGCTTTAGTTGGGA 57.306 39.130 0.00 0.00 0.00 4.37
2312 2422 5.675538 AGTTATAGCAGCTTTAGTTGGGAG 58.324 41.667 0.00 0.00 0.00 4.30
2313 2423 5.189934 AGTTATAGCAGCTTTAGTTGGGAGT 59.810 40.000 0.00 0.00 0.00 3.85
2314 2424 6.383147 AGTTATAGCAGCTTTAGTTGGGAGTA 59.617 38.462 0.00 0.00 0.00 2.59
2315 2425 5.896073 ATAGCAGCTTTAGTTGGGAGTAT 57.104 39.130 0.00 0.00 0.00 2.12
2316 2426 6.996180 ATAGCAGCTTTAGTTGGGAGTATA 57.004 37.500 0.00 0.00 0.00 1.47
2317 2427 5.693769 AGCAGCTTTAGTTGGGAGTATAA 57.306 39.130 0.00 0.00 0.00 0.98
2318 2428 5.429130 AGCAGCTTTAGTTGGGAGTATAAC 58.571 41.667 0.00 0.00 0.00 1.89
2319 2429 5.045869 AGCAGCTTTAGTTGGGAGTATAACA 60.046 40.000 0.00 0.00 0.00 2.41
2320 2430 5.646360 GCAGCTTTAGTTGGGAGTATAACAA 59.354 40.000 0.00 0.00 0.00 2.83
2321 2431 6.318900 GCAGCTTTAGTTGGGAGTATAACAAT 59.681 38.462 0.00 0.00 0.00 2.71
2322 2432 7.497909 GCAGCTTTAGTTGGGAGTATAACAATA 59.502 37.037 0.00 0.00 0.00 1.90
2323 2433 9.561069 CAGCTTTAGTTGGGAGTATAACAATAT 57.439 33.333 0.00 0.00 0.00 1.28
2328 2438 6.698380 AGTTGGGAGTATAACAATATAGCCG 58.302 40.000 0.00 0.00 0.00 5.52
2329 2439 5.670792 TGGGAGTATAACAATATAGCCGG 57.329 43.478 0.00 0.00 0.00 6.13
2330 2440 4.468510 TGGGAGTATAACAATATAGCCGGG 59.531 45.833 2.18 0.00 0.00 5.73
2331 2441 4.713321 GGGAGTATAACAATATAGCCGGGA 59.287 45.833 2.18 0.00 0.00 5.14
2332 2442 5.163437 GGGAGTATAACAATATAGCCGGGAG 60.163 48.000 2.18 0.00 0.00 4.30
2333 2443 5.655532 GGAGTATAACAATATAGCCGGGAGA 59.344 44.000 2.18 0.00 0.00 3.71
2334 2444 6.154021 GGAGTATAACAATATAGCCGGGAGAA 59.846 42.308 2.18 0.00 0.00 2.87
2335 2445 7.310237 GGAGTATAACAATATAGCCGGGAGAAA 60.310 40.741 2.18 0.00 0.00 2.52
2336 2446 7.384477 AGTATAACAATATAGCCGGGAGAAAC 58.616 38.462 2.18 0.00 0.00 2.78
2337 2447 3.487120 ACAATATAGCCGGGAGAAACC 57.513 47.619 2.18 0.00 38.08 3.27
2408 2518 8.675504 TCTTCTAAATAACTGTCTACTTCCTCG 58.324 37.037 0.00 0.00 0.00 4.63
2409 2519 6.793349 TCTAAATAACTGTCTACTTCCTCGC 58.207 40.000 0.00 0.00 0.00 5.03
2410 2520 4.388378 AATAACTGTCTACTTCCTCGCC 57.612 45.455 0.00 0.00 0.00 5.54
2411 2521 1.926108 AACTGTCTACTTCCTCGCCT 58.074 50.000 0.00 0.00 0.00 5.52
2412 2522 1.926108 ACTGTCTACTTCCTCGCCTT 58.074 50.000 0.00 0.00 0.00 4.35
2413 2523 2.249139 ACTGTCTACTTCCTCGCCTTT 58.751 47.619 0.00 0.00 0.00 3.11
2414 2524 2.633481 ACTGTCTACTTCCTCGCCTTTT 59.367 45.455 0.00 0.00 0.00 2.27
2415 2525 3.071167 ACTGTCTACTTCCTCGCCTTTTT 59.929 43.478 0.00 0.00 0.00 1.94
2437 2547 7.770801 TTTTTGTCGATGTACTATCTCCATG 57.229 36.000 0.00 0.00 0.00 3.66
2438 2548 4.505313 TGTCGATGTACTATCTCCATGC 57.495 45.455 0.00 0.00 0.00 4.06
2439 2549 4.145052 TGTCGATGTACTATCTCCATGCT 58.855 43.478 0.00 0.00 0.00 3.79
2440 2550 4.584743 TGTCGATGTACTATCTCCATGCTT 59.415 41.667 0.00 0.00 0.00 3.91
2441 2551 5.069119 TGTCGATGTACTATCTCCATGCTTT 59.931 40.000 0.00 0.00 0.00 3.51
2442 2552 5.986135 GTCGATGTACTATCTCCATGCTTTT 59.014 40.000 0.00 0.00 0.00 2.27
2443 2553 6.480320 GTCGATGTACTATCTCCATGCTTTTT 59.520 38.462 0.00 0.00 0.00 1.94
2444 2554 6.701841 TCGATGTACTATCTCCATGCTTTTTC 59.298 38.462 0.00 0.00 0.00 2.29
2445 2555 6.479990 CGATGTACTATCTCCATGCTTTTTCA 59.520 38.462 0.00 0.00 0.00 2.69
2446 2556 7.307042 CGATGTACTATCTCCATGCTTTTTCAG 60.307 40.741 0.00 0.00 0.00 3.02
2447 2557 6.711277 TGTACTATCTCCATGCTTTTTCAGT 58.289 36.000 0.00 0.00 0.00 3.41
2448 2558 6.595326 TGTACTATCTCCATGCTTTTTCAGTG 59.405 38.462 0.00 0.00 0.00 3.66
2449 2559 5.564550 ACTATCTCCATGCTTTTTCAGTGT 58.435 37.500 0.00 0.00 0.00 3.55
2450 2560 6.006449 ACTATCTCCATGCTTTTTCAGTGTT 58.994 36.000 0.00 0.00 0.00 3.32
2451 2561 4.572985 TCTCCATGCTTTTTCAGTGTTG 57.427 40.909 0.00 0.00 0.00 3.33
2452 2562 3.953612 TCTCCATGCTTTTTCAGTGTTGT 59.046 39.130 0.00 0.00 0.00 3.32
2453 2563 4.044336 TCCATGCTTTTTCAGTGTTGTG 57.956 40.909 0.00 0.00 0.00 3.33
2454 2564 2.540931 CCATGCTTTTTCAGTGTTGTGC 59.459 45.455 0.00 0.00 0.00 4.57
2455 2565 3.188492 CATGCTTTTTCAGTGTTGTGCA 58.812 40.909 0.00 0.00 0.00 4.57
2456 2566 3.309961 TGCTTTTTCAGTGTTGTGCAA 57.690 38.095 0.00 0.00 0.00 4.08
2457 2567 2.992543 TGCTTTTTCAGTGTTGTGCAAC 59.007 40.909 8.01 8.01 41.50 4.17
2458 2568 3.253230 GCTTTTTCAGTGTTGTGCAACT 58.747 40.909 14.97 0.00 41.67 3.16
2459 2569 3.304293 GCTTTTTCAGTGTTGTGCAACTC 59.696 43.478 14.97 11.69 41.67 3.01
2460 2570 2.823196 TTTCAGTGTTGTGCAACTCG 57.177 45.000 14.97 8.76 41.67 4.18
2461 2571 0.376852 TTCAGTGTTGTGCAACTCGC 59.623 50.000 14.97 6.66 41.67 5.03
2462 2572 1.009675 CAGTGTTGTGCAACTCGCC 60.010 57.895 14.97 2.70 41.67 5.54
2463 2573 1.451207 AGTGTTGTGCAACTCGCCA 60.451 52.632 14.97 0.00 41.67 5.69
2464 2574 0.819259 AGTGTTGTGCAACTCGCCAT 60.819 50.000 14.97 0.00 41.67 4.40
2465 2575 0.871722 GTGTTGTGCAACTCGCCATA 59.128 50.000 14.97 0.00 41.67 2.74
2466 2576 1.135972 GTGTTGTGCAACTCGCCATAG 60.136 52.381 14.97 0.00 41.67 2.23
2467 2577 1.270571 TGTTGTGCAACTCGCCATAGA 60.271 47.619 14.97 0.00 41.67 1.98
2468 2578 1.394917 GTTGTGCAACTCGCCATAGAG 59.605 52.381 7.72 0.00 43.56 2.43
2469 2579 0.894835 TGTGCAACTCGCCATAGAGA 59.105 50.000 0.62 0.00 40.57 3.10
2470 2580 1.482182 TGTGCAACTCGCCATAGAGAT 59.518 47.619 0.62 0.00 40.57 2.75
2471 2581 2.131183 GTGCAACTCGCCATAGAGATC 58.869 52.381 0.62 0.00 40.57 2.75
2472 2582 1.269257 TGCAACTCGCCATAGAGATCG 60.269 52.381 0.62 0.00 40.57 3.69
2473 2583 1.001268 GCAACTCGCCATAGAGATCGA 60.001 52.381 0.62 0.00 40.57 3.59
2474 2584 2.352225 GCAACTCGCCATAGAGATCGAT 60.352 50.000 0.00 0.00 40.57 3.59
2475 2585 3.240884 CAACTCGCCATAGAGATCGATG 58.759 50.000 0.54 0.00 40.57 3.84
2476 2586 1.201181 ACTCGCCATAGAGATCGATGC 59.799 52.381 0.54 0.00 40.57 3.91
2477 2587 1.200948 CTCGCCATAGAGATCGATGCA 59.799 52.381 0.54 0.00 40.57 3.96
2478 2588 1.068264 TCGCCATAGAGATCGATGCAC 60.068 52.381 0.54 0.00 0.00 4.57
2479 2589 1.336240 CGCCATAGAGATCGATGCACA 60.336 52.381 0.54 0.00 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.736682 GCCACATCACCGCACGTAC 61.737 63.158 0.00 0.00 0.00 3.67
1 2 2.433491 GCCACATCACCGCACGTA 60.433 61.111 0.00 0.00 0.00 3.57
2 3 4.314440 AGCCACATCACCGCACGT 62.314 61.111 0.00 0.00 0.00 4.49
3 4 3.490759 GAGCCACATCACCGCACG 61.491 66.667 0.00 0.00 0.00 5.34
4 5 3.490759 CGAGCCACATCACCGCAC 61.491 66.667 0.00 0.00 0.00 5.34
5 6 4.758251 CCGAGCCACATCACCGCA 62.758 66.667 0.00 0.00 0.00 5.69
8 9 1.244019 AAAAGCCGAGCCACATCACC 61.244 55.000 0.00 0.00 0.00 4.02
9 10 0.598065 AAAAAGCCGAGCCACATCAC 59.402 50.000 0.00 0.00 0.00 3.06
10 11 3.034924 AAAAAGCCGAGCCACATCA 57.965 47.368 0.00 0.00 0.00 3.07
25 26 4.142049 ACCTGATCACCGCAAAAAGAAAAA 60.142 37.500 0.00 0.00 0.00 1.94
26 27 3.383185 ACCTGATCACCGCAAAAAGAAAA 59.617 39.130 0.00 0.00 0.00 2.29
27 28 2.955660 ACCTGATCACCGCAAAAAGAAA 59.044 40.909 0.00 0.00 0.00 2.52
28 29 2.582052 ACCTGATCACCGCAAAAAGAA 58.418 42.857 0.00 0.00 0.00 2.52
29 30 2.270352 ACCTGATCACCGCAAAAAGA 57.730 45.000 0.00 0.00 0.00 2.52
30 31 3.731867 GCATACCTGATCACCGCAAAAAG 60.732 47.826 0.00 0.00 0.00 2.27
31 32 2.163412 GCATACCTGATCACCGCAAAAA 59.837 45.455 0.00 0.00 0.00 1.94
32 33 1.742831 GCATACCTGATCACCGCAAAA 59.257 47.619 0.00 0.00 0.00 2.44
33 34 1.065491 AGCATACCTGATCACCGCAAA 60.065 47.619 0.00 0.00 0.00 3.68
34 35 0.541392 AGCATACCTGATCACCGCAA 59.459 50.000 0.00 0.00 0.00 4.85
35 36 0.541392 AAGCATACCTGATCACCGCA 59.459 50.000 0.00 0.00 0.00 5.69
36 37 0.940126 CAAGCATACCTGATCACCGC 59.060 55.000 0.00 0.00 0.00 5.68
37 38 0.940126 GCAAGCATACCTGATCACCG 59.060 55.000 0.00 0.00 0.00 4.94
38 39 0.940126 CGCAAGCATACCTGATCACC 59.060 55.000 0.00 0.00 0.00 4.02
39 40 1.594862 GTCGCAAGCATACCTGATCAC 59.405 52.381 0.00 0.00 37.18 3.06
40 41 1.802508 CGTCGCAAGCATACCTGATCA 60.803 52.381 0.00 0.00 37.18 2.92
41 42 0.855349 CGTCGCAAGCATACCTGATC 59.145 55.000 0.00 0.00 37.18 2.92
42 43 0.175760 ACGTCGCAAGCATACCTGAT 59.824 50.000 0.00 0.00 37.18 2.90
43 44 0.037697 AACGTCGCAAGCATACCTGA 60.038 50.000 0.00 0.00 37.18 3.86
44 45 0.370273 GAACGTCGCAAGCATACCTG 59.630 55.000 0.00 0.00 37.18 4.00
45 46 0.739813 GGAACGTCGCAAGCATACCT 60.740 55.000 0.00 0.00 37.18 3.08
46 47 1.017177 TGGAACGTCGCAAGCATACC 61.017 55.000 0.00 0.00 37.18 2.73
47 48 0.370273 CTGGAACGTCGCAAGCATAC 59.630 55.000 0.00 0.00 37.18 2.39
48 49 0.245266 TCTGGAACGTCGCAAGCATA 59.755 50.000 0.00 0.00 37.18 3.14
49 50 1.005037 TCTGGAACGTCGCAAGCAT 60.005 52.632 0.00 0.00 37.18 3.79
50 51 1.664649 CTCTGGAACGTCGCAAGCA 60.665 57.895 0.00 0.00 37.18 3.91
51 52 1.664965 ACTCTGGAACGTCGCAAGC 60.665 57.895 0.00 0.00 37.18 4.01
52 53 1.891060 GCACTCTGGAACGTCGCAAG 61.891 60.000 0.00 0.00 0.00 4.01
53 54 1.954146 GCACTCTGGAACGTCGCAA 60.954 57.895 0.00 0.00 0.00 4.85
54 55 2.355837 GCACTCTGGAACGTCGCA 60.356 61.111 0.00 0.00 0.00 5.10
55 56 2.355837 TGCACTCTGGAACGTCGC 60.356 61.111 0.00 0.00 0.00 5.19
56 57 1.734477 CCTGCACTCTGGAACGTCG 60.734 63.158 0.00 0.00 33.56 5.12
57 58 0.946221 CACCTGCACTCTGGAACGTC 60.946 60.000 0.00 0.00 35.51 4.34
58 59 1.069765 CACCTGCACTCTGGAACGT 59.930 57.895 0.00 0.00 35.51 3.99
59 60 2.320587 GCACCTGCACTCTGGAACG 61.321 63.158 0.00 0.00 41.59 3.95
60 61 3.660621 GCACCTGCACTCTGGAAC 58.339 61.111 0.00 0.00 41.59 3.62
73 74 3.755628 TACGAGTCCCGCTGCACC 61.756 66.667 0.00 0.00 43.32 5.01
74 75 1.651240 TAGTACGAGTCCCGCTGCAC 61.651 60.000 0.00 0.00 43.32 4.57
75 76 0.750546 ATAGTACGAGTCCCGCTGCA 60.751 55.000 0.00 0.00 43.32 4.41
76 77 1.069364 GTATAGTACGAGTCCCGCTGC 60.069 57.143 0.00 0.00 43.32 5.25
77 78 2.479656 GAGTATAGTACGAGTCCCGCTG 59.520 54.545 0.00 0.00 43.32 5.18
78 79 2.368221 AGAGTATAGTACGAGTCCCGCT 59.632 50.000 0.00 0.00 43.32 5.52
79 80 2.479656 CAGAGTATAGTACGAGTCCCGC 59.520 54.545 0.00 0.00 43.32 6.13
80 81 2.479656 GCAGAGTATAGTACGAGTCCCG 59.520 54.545 0.00 0.00 45.44 5.14
81 82 2.813172 GGCAGAGTATAGTACGAGTCCC 59.187 54.545 0.00 0.00 0.00 4.46
82 83 3.474600 TGGCAGAGTATAGTACGAGTCC 58.525 50.000 0.00 0.00 0.00 3.85
83 84 4.614078 GCATGGCAGAGTATAGTACGAGTC 60.614 50.000 0.00 0.00 0.00 3.36
84 85 3.253677 GCATGGCAGAGTATAGTACGAGT 59.746 47.826 0.00 0.00 0.00 4.18
85 86 3.253432 TGCATGGCAGAGTATAGTACGAG 59.747 47.826 0.00 0.00 33.32 4.18
86 87 3.004419 GTGCATGGCAGAGTATAGTACGA 59.996 47.826 0.00 0.00 40.08 3.43
87 88 3.309388 GTGCATGGCAGAGTATAGTACG 58.691 50.000 0.00 0.00 40.08 3.67
88 89 3.322254 AGGTGCATGGCAGAGTATAGTAC 59.678 47.826 0.00 0.00 40.08 2.73
89 90 3.576861 AGGTGCATGGCAGAGTATAGTA 58.423 45.455 0.00 0.00 40.08 1.82
90 91 2.402564 AGGTGCATGGCAGAGTATAGT 58.597 47.619 0.00 0.00 40.08 2.12
91 92 3.482156 AAGGTGCATGGCAGAGTATAG 57.518 47.619 0.00 0.00 40.08 1.31
92 93 3.931907 AAAGGTGCATGGCAGAGTATA 57.068 42.857 0.00 0.00 40.08 1.47
93 94 2.814805 AAAGGTGCATGGCAGAGTAT 57.185 45.000 0.00 0.00 40.08 2.12
94 95 2.584835 AAAAGGTGCATGGCAGAGTA 57.415 45.000 0.00 0.00 40.08 2.59
95 96 1.708341 AAAAAGGTGCATGGCAGAGT 58.292 45.000 0.00 0.00 40.08 3.24
96 97 2.557924 TGTAAAAAGGTGCATGGCAGAG 59.442 45.455 0.00 0.00 40.08 3.35
97 98 2.557924 CTGTAAAAAGGTGCATGGCAGA 59.442 45.455 0.00 0.00 40.08 4.26
98 99 2.353011 CCTGTAAAAAGGTGCATGGCAG 60.353 50.000 0.00 0.00 40.08 4.85
99 100 1.617850 CCTGTAAAAAGGTGCATGGCA 59.382 47.619 0.00 0.00 35.60 4.92
100 101 1.672737 GCCTGTAAAAAGGTGCATGGC 60.673 52.381 0.00 0.00 39.75 4.40
101 102 1.617850 TGCCTGTAAAAAGGTGCATGG 59.382 47.619 0.00 0.00 39.75 3.66
102 103 2.676076 GTGCCTGTAAAAAGGTGCATG 58.324 47.619 0.00 0.00 39.75 4.06
103 104 1.269448 CGTGCCTGTAAAAAGGTGCAT 59.731 47.619 0.00 0.00 39.75 3.96
104 105 0.665835 CGTGCCTGTAAAAAGGTGCA 59.334 50.000 0.00 0.00 39.75 4.57
105 106 0.663269 GCGTGCCTGTAAAAAGGTGC 60.663 55.000 0.00 0.00 39.75 5.01
106 107 0.665835 TGCGTGCCTGTAAAAAGGTG 59.334 50.000 0.00 0.00 39.75 4.00
107 108 0.951558 CTGCGTGCCTGTAAAAAGGT 59.048 50.000 0.00 0.00 39.75 3.50
108 109 0.240945 CCTGCGTGCCTGTAAAAAGG 59.759 55.000 0.00 0.00 40.63 3.11
109 110 0.387239 GCCTGCGTGCCTGTAAAAAG 60.387 55.000 0.00 0.00 0.00 2.27
110 111 1.657556 GCCTGCGTGCCTGTAAAAA 59.342 52.632 0.00 0.00 0.00 1.94
128 129 0.721718 GCTTCTCCCATTTGTCGTCG 59.278 55.000 0.00 0.00 0.00 5.12
300 304 6.091713 GCTAGCCTATCGTTGTTGTTTTCTTA 59.908 38.462 2.29 0.00 0.00 2.10
336 340 3.114065 GCCTACATTACACTACACGCTC 58.886 50.000 0.00 0.00 0.00 5.03
396 400 0.730834 CTCGAGTGTTGCTGGAGTCG 60.731 60.000 3.62 0.00 42.72 4.18
635 647 1.060308 CGCTGGTCCGTTTATTGCG 59.940 57.895 0.00 0.00 36.19 4.85
666 681 3.255397 AAGCTCAGCTGGGTGGCT 61.255 61.111 16.66 15.60 44.10 4.75
667 682 3.060615 CAAGCTCAGCTGGGTGGC 61.061 66.667 16.66 13.65 39.62 5.01
669 684 3.429141 CGCAAGCTCAGCTGGGTG 61.429 66.667 16.66 7.71 39.62 4.61
803 833 3.186409 TCGATCGTGCTTTTTCAAAGGAG 59.814 43.478 15.94 0.00 0.00 3.69
816 846 1.204228 TATCGCCGTTTCGATCGTGC 61.204 55.000 15.94 10.09 44.97 5.34
817 847 0.770590 CTATCGCCGTTTCGATCGTG 59.229 55.000 15.94 3.86 44.97 4.35
818 848 0.317603 CCTATCGCCGTTTCGATCGT 60.318 55.000 15.94 0.00 44.97 3.73
819 849 0.317603 ACCTATCGCCGTTTCGATCG 60.318 55.000 9.36 9.36 44.97 3.69
820 850 2.582687 CTACCTATCGCCGTTTCGATC 58.417 52.381 7.55 0.00 44.97 3.69
822 852 0.664761 CCTACCTATCGCCGTTTCGA 59.335 55.000 0.00 0.00 43.09 3.71
943 983 4.401519 CCTAGGTGAAGAAGATTGGTACGA 59.598 45.833 0.00 0.00 0.00 3.43
944 984 4.683832 CCTAGGTGAAGAAGATTGGTACG 58.316 47.826 0.00 0.00 0.00 3.67
945 985 4.162509 AGCCTAGGTGAAGAAGATTGGTAC 59.837 45.833 11.31 0.00 0.00 3.34
946 986 4.362677 AGCCTAGGTGAAGAAGATTGGTA 58.637 43.478 11.31 0.00 0.00 3.25
948 988 3.922171 AGCCTAGGTGAAGAAGATTGG 57.078 47.619 11.31 0.00 0.00 3.16
1095 1161 4.168291 CTCCGGAGCAAGCCCCTC 62.168 72.222 20.67 0.00 0.00 4.30
1128 1194 3.129502 CCGACGGGCGAGTAGTGA 61.130 66.667 3.94 0.00 44.57 3.41
1268 1343 2.262915 CGAGGTTCTTCCAGCGCT 59.737 61.111 2.64 2.64 39.02 5.92
1348 1423 2.679716 GCTGCCCCTCAGGTTCAT 59.320 61.111 0.00 0.00 43.06 2.57
1434 1509 1.672356 GAAGCAGGAAAGCGCCAGA 60.672 57.895 2.29 0.00 40.15 3.86
1443 1518 0.399454 AGCAGCAGAAGAAGCAGGAA 59.601 50.000 0.00 0.00 0.00 3.36
1554 1631 7.073342 AGCATCTTAAATAAACAAGGACGAC 57.927 36.000 0.00 0.00 0.00 4.34
1555 1632 7.681939 AAGCATCTTAAATAAACAAGGACGA 57.318 32.000 0.00 0.00 0.00 4.20
1653 1750 6.432607 AGACATCTGTTGCATAAGAACATG 57.567 37.500 3.22 0.00 32.96 3.21
1654 1751 7.334090 ACTAGACATCTGTTGCATAAGAACAT 58.666 34.615 0.00 0.00 32.96 2.71
1655 1752 6.701340 ACTAGACATCTGTTGCATAAGAACA 58.299 36.000 0.00 0.00 0.00 3.18
1656 1753 7.459486 CAACTAGACATCTGTTGCATAAGAAC 58.541 38.462 0.00 0.00 35.39 3.01
1657 1754 7.601073 CAACTAGACATCTGTTGCATAAGAA 57.399 36.000 0.00 0.00 35.39 2.52
1672 1781 0.601558 GTGGTCCTCGCAACTAGACA 59.398 55.000 0.00 0.00 0.00 3.41
1753 1863 8.440833 GCACTACACTAATATCAAAAACGTTCT 58.559 33.333 0.00 0.00 0.00 3.01
1754 1864 7.691050 GGCACTACACTAATATCAAAAACGTTC 59.309 37.037 0.00 0.00 0.00 3.95
1755 1865 7.173562 TGGCACTACACTAATATCAAAAACGTT 59.826 33.333 0.00 0.00 0.00 3.99
1756 1866 6.651643 TGGCACTACACTAATATCAAAAACGT 59.348 34.615 0.00 0.00 0.00 3.99
1757 1867 7.067532 TGGCACTACACTAATATCAAAAACG 57.932 36.000 0.00 0.00 0.00 3.60
1758 1868 9.685828 TTTTGGCACTACACTAATATCAAAAAC 57.314 29.630 0.00 0.00 31.48 2.43
1761 1871 9.853555 CATTTTTGGCACTACACTAATATCAAA 57.146 29.630 0.00 0.00 0.00 2.69
1762 1872 9.019656 ACATTTTTGGCACTACACTAATATCAA 57.980 29.630 0.00 0.00 0.00 2.57
1763 1873 8.574251 ACATTTTTGGCACTACACTAATATCA 57.426 30.769 0.00 0.00 0.00 2.15
1764 1874 9.503427 GAACATTTTTGGCACTACACTAATATC 57.497 33.333 0.00 0.00 0.00 1.63
1765 1875 9.243105 AGAACATTTTTGGCACTACACTAATAT 57.757 29.630 0.00 0.00 0.00 1.28
1766 1876 8.630054 AGAACATTTTTGGCACTACACTAATA 57.370 30.769 0.00 0.00 0.00 0.98
1767 1877 7.524717 AGAACATTTTTGGCACTACACTAAT 57.475 32.000 0.00 0.00 0.00 1.73
1768 1878 6.952773 AGAACATTTTTGGCACTACACTAA 57.047 33.333 0.00 0.00 0.00 2.24
1769 1879 6.952773 AAGAACATTTTTGGCACTACACTA 57.047 33.333 0.00 0.00 0.00 2.74
1770 1880 5.852282 AAGAACATTTTTGGCACTACACT 57.148 34.783 0.00 0.00 0.00 3.55
1771 1881 9.855021 AATATAAGAACATTTTTGGCACTACAC 57.145 29.630 0.00 0.00 0.00 2.90
1776 1886 9.260002 CCCATAATATAAGAACATTTTTGGCAC 57.740 33.333 0.00 0.00 0.00 5.01
1777 1887 9.206690 TCCCATAATATAAGAACATTTTTGGCA 57.793 29.630 0.00 0.00 0.00 4.92
1778 1888 9.476202 GTCCCATAATATAAGAACATTTTTGGC 57.524 33.333 0.00 0.00 0.00 4.52
1779 1889 9.677567 CGTCCCATAATATAAGAACATTTTTGG 57.322 33.333 0.00 0.00 0.00 3.28
1783 1893 9.847224 ACTTCGTCCCATAATATAAGAACATTT 57.153 29.630 0.00 0.00 0.00 2.32
1784 1894 9.273016 CACTTCGTCCCATAATATAAGAACATT 57.727 33.333 0.00 0.00 0.00 2.71
1785 1895 8.647796 TCACTTCGTCCCATAATATAAGAACAT 58.352 33.333 0.00 0.00 0.00 2.71
1786 1896 8.014070 TCACTTCGTCCCATAATATAAGAACA 57.986 34.615 0.00 0.00 0.00 3.18
1787 1897 8.142551 ACTCACTTCGTCCCATAATATAAGAAC 58.857 37.037 0.00 0.00 0.00 3.01
1788 1898 8.246430 ACTCACTTCGTCCCATAATATAAGAA 57.754 34.615 0.00 0.00 0.00 2.52
1789 1899 7.834881 ACTCACTTCGTCCCATAATATAAGA 57.165 36.000 0.00 0.00 0.00 2.10
1790 1900 9.574458 CATACTCACTTCGTCCCATAATATAAG 57.426 37.037 0.00 0.00 0.00 1.73
1791 1901 9.304335 TCATACTCACTTCGTCCCATAATATAA 57.696 33.333 0.00 0.00 0.00 0.98
1792 1902 8.873186 TCATACTCACTTCGTCCCATAATATA 57.127 34.615 0.00 0.00 0.00 0.86
1793 1903 7.776618 TCATACTCACTTCGTCCCATAATAT 57.223 36.000 0.00 0.00 0.00 1.28
1794 1904 7.602753 CATCATACTCACTTCGTCCCATAATA 58.397 38.462 0.00 0.00 0.00 0.98
1795 1905 6.459066 CATCATACTCACTTCGTCCCATAAT 58.541 40.000 0.00 0.00 0.00 1.28
1796 1906 5.739070 GCATCATACTCACTTCGTCCCATAA 60.739 44.000 0.00 0.00 0.00 1.90
1797 1907 4.262036 GCATCATACTCACTTCGTCCCATA 60.262 45.833 0.00 0.00 0.00 2.74
1798 1908 3.493350 GCATCATACTCACTTCGTCCCAT 60.493 47.826 0.00 0.00 0.00 4.00
1799 1909 2.159099 GCATCATACTCACTTCGTCCCA 60.159 50.000 0.00 0.00 0.00 4.37
1800 1910 2.101582 AGCATCATACTCACTTCGTCCC 59.898 50.000 0.00 0.00 0.00 4.46
1801 1911 3.444703 AGCATCATACTCACTTCGTCC 57.555 47.619 0.00 0.00 0.00 4.79
1802 1912 3.978217 GCTAGCATCATACTCACTTCGTC 59.022 47.826 10.63 0.00 0.00 4.20
1803 1913 3.549019 CGCTAGCATCATACTCACTTCGT 60.549 47.826 16.45 0.00 0.00 3.85
1804 1914 2.976509 CGCTAGCATCATACTCACTTCG 59.023 50.000 16.45 0.00 0.00 3.79
1805 1915 3.312828 CCGCTAGCATCATACTCACTTC 58.687 50.000 16.45 0.00 0.00 3.01
1806 1916 2.546795 GCCGCTAGCATCATACTCACTT 60.547 50.000 16.45 0.00 42.97 3.16
1807 1917 1.000283 GCCGCTAGCATCATACTCACT 60.000 52.381 16.45 0.00 42.97 3.41
1808 1918 1.423395 GCCGCTAGCATCATACTCAC 58.577 55.000 16.45 0.00 42.97 3.51
1809 1919 3.894257 GCCGCTAGCATCATACTCA 57.106 52.632 16.45 0.00 42.97 3.41
1870 1980 2.130073 AAAAGCCTTTGCGCGAGACC 62.130 55.000 12.10 0.00 44.33 3.85
1880 1990 3.037549 TGGTGATCCACAAAAAGCCTTT 58.962 40.909 0.00 0.00 39.03 3.11
1935 2045 3.351740 TCATTGCCGCAGAAAGGAATAA 58.648 40.909 0.00 0.00 0.00 1.40
1936 2046 2.945008 CTCATTGCCGCAGAAAGGAATA 59.055 45.455 0.00 0.00 0.00 1.75
1937 2047 1.747355 CTCATTGCCGCAGAAAGGAAT 59.253 47.619 0.00 0.00 0.00 3.01
1938 2048 1.167851 CTCATTGCCGCAGAAAGGAA 58.832 50.000 0.00 0.00 0.00 3.36
1939 2049 0.677731 CCTCATTGCCGCAGAAAGGA 60.678 55.000 10.10 0.00 0.00 3.36
1940 2050 1.660560 CCCTCATTGCCGCAGAAAGG 61.661 60.000 9.09 9.09 0.00 3.11
1941 2051 1.805254 CCCTCATTGCCGCAGAAAG 59.195 57.895 0.00 0.00 0.00 2.62
1942 2052 2.342650 GCCCTCATTGCCGCAGAAA 61.343 57.895 0.00 0.00 0.00 2.52
1943 2053 1.909459 TAGCCCTCATTGCCGCAGAA 61.909 55.000 0.00 0.00 0.00 3.02
1944 2054 1.699054 ATAGCCCTCATTGCCGCAGA 61.699 55.000 0.00 0.00 0.00 4.26
1945 2055 1.228063 ATAGCCCTCATTGCCGCAG 60.228 57.895 0.00 0.00 0.00 5.18
1946 2056 1.227943 GATAGCCCTCATTGCCGCA 60.228 57.895 0.00 0.00 0.00 5.69
1947 2057 0.819259 TTGATAGCCCTCATTGCCGC 60.819 55.000 0.00 0.00 0.00 6.53
1948 2058 1.679139 TTTGATAGCCCTCATTGCCG 58.321 50.000 0.00 0.00 0.00 5.69
1949 2059 3.893813 AGAATTTGATAGCCCTCATTGCC 59.106 43.478 0.00 0.00 0.00 4.52
1950 2060 4.340381 ACAGAATTTGATAGCCCTCATTGC 59.660 41.667 0.00 0.00 0.00 3.56
1951 2061 6.461110 AACAGAATTTGATAGCCCTCATTG 57.539 37.500 0.00 0.00 0.00 2.82
1952 2062 5.297776 CGAACAGAATTTGATAGCCCTCATT 59.702 40.000 0.00 0.00 0.00 2.57
1953 2063 4.818546 CGAACAGAATTTGATAGCCCTCAT 59.181 41.667 0.00 0.00 0.00 2.90
1954 2064 4.081142 TCGAACAGAATTTGATAGCCCTCA 60.081 41.667 0.00 0.00 0.00 3.86
1955 2065 4.442706 TCGAACAGAATTTGATAGCCCTC 58.557 43.478 0.00 0.00 0.00 4.30
1956 2066 4.487714 TCGAACAGAATTTGATAGCCCT 57.512 40.909 0.00 0.00 0.00 5.19
1957 2067 4.214332 GGATCGAACAGAATTTGATAGCCC 59.786 45.833 0.00 0.00 0.00 5.19
1958 2068 4.816385 TGGATCGAACAGAATTTGATAGCC 59.184 41.667 0.00 0.00 0.00 3.93
1959 2069 5.991328 TGGATCGAACAGAATTTGATAGC 57.009 39.130 0.00 0.00 0.00 2.97
1960 2070 8.824159 ACTATGGATCGAACAGAATTTGATAG 57.176 34.615 0.00 0.00 0.00 2.08
1962 2072 9.265901 CTTACTATGGATCGAACAGAATTTGAT 57.734 33.333 0.00 0.00 0.00 2.57
1963 2073 7.710907 CCTTACTATGGATCGAACAGAATTTGA 59.289 37.037 0.00 0.00 0.00 2.69
1964 2074 7.041780 CCCTTACTATGGATCGAACAGAATTTG 60.042 40.741 0.00 0.00 0.00 2.32
1965 2075 6.992715 CCCTTACTATGGATCGAACAGAATTT 59.007 38.462 0.00 0.00 0.00 1.82
1966 2076 6.464465 CCCCTTACTATGGATCGAACAGAATT 60.464 42.308 0.00 0.00 0.00 2.17
1967 2077 5.012148 CCCCTTACTATGGATCGAACAGAAT 59.988 44.000 0.00 0.00 0.00 2.40
1968 2078 4.344102 CCCCTTACTATGGATCGAACAGAA 59.656 45.833 0.00 0.00 0.00 3.02
1969 2079 3.895656 CCCCTTACTATGGATCGAACAGA 59.104 47.826 0.00 0.00 0.00 3.41
1970 2080 3.895656 TCCCCTTACTATGGATCGAACAG 59.104 47.826 0.00 0.00 0.00 3.16
1971 2081 3.918566 TCCCCTTACTATGGATCGAACA 58.081 45.455 0.00 0.00 0.00 3.18
1972 2082 4.100498 TGTTCCCCTTACTATGGATCGAAC 59.900 45.833 0.00 0.00 0.00 3.95
1973 2083 4.291792 TGTTCCCCTTACTATGGATCGAA 58.708 43.478 0.00 0.00 0.00 3.71
1974 2084 3.895656 CTGTTCCCCTTACTATGGATCGA 59.104 47.826 0.00 0.00 0.00 3.59
1975 2085 3.006967 CCTGTTCCCCTTACTATGGATCG 59.993 52.174 0.00 0.00 0.00 3.69
1976 2086 3.974642 ACCTGTTCCCCTTACTATGGATC 59.025 47.826 0.00 0.00 0.00 3.36
1977 2087 4.022359 ACCTGTTCCCCTTACTATGGAT 57.978 45.455 0.00 0.00 0.00 3.41
1978 2088 3.502051 ACCTGTTCCCCTTACTATGGA 57.498 47.619 0.00 0.00 0.00 3.41
1979 2089 3.780850 AGAACCTGTTCCCCTTACTATGG 59.219 47.826 6.41 0.00 40.33 2.74
1980 2090 4.469945 TCAGAACCTGTTCCCCTTACTATG 59.530 45.833 6.41 0.00 40.33 2.23
1981 2091 4.695606 TCAGAACCTGTTCCCCTTACTAT 58.304 43.478 6.41 0.00 40.33 2.12
1982 2092 4.136341 TCAGAACCTGTTCCCCTTACTA 57.864 45.455 6.41 0.00 40.33 1.82
1983 2093 2.986050 TCAGAACCTGTTCCCCTTACT 58.014 47.619 6.41 0.00 40.33 2.24
1984 2094 3.782656 TTCAGAACCTGTTCCCCTTAC 57.217 47.619 6.41 0.00 40.33 2.34
1985 2095 4.799715 TTTTCAGAACCTGTTCCCCTTA 57.200 40.909 6.41 0.00 40.33 2.69
1986 2096 3.680777 TTTTCAGAACCTGTTCCCCTT 57.319 42.857 6.41 0.00 40.33 3.95
1987 2097 3.680777 TTTTTCAGAACCTGTTCCCCT 57.319 42.857 6.41 0.00 40.33 4.79
2005 2115 9.942850 ACCAAAAATCCGATATCTTTGAATTTT 57.057 25.926 13.26 9.74 0.00 1.82
2006 2116 9.369904 CACCAAAAATCCGATATCTTTGAATTT 57.630 29.630 13.26 5.45 0.00 1.82
2007 2117 7.981225 CCACCAAAAATCCGATATCTTTGAATT 59.019 33.333 13.26 0.52 0.00 2.17
2008 2118 7.417797 CCCACCAAAAATCCGATATCTTTGAAT 60.418 37.037 13.26 2.43 0.00 2.57
2009 2119 6.127479 CCCACCAAAAATCCGATATCTTTGAA 60.127 38.462 13.26 0.00 0.00 2.69
2010 2120 5.359576 CCCACCAAAAATCCGATATCTTTGA 59.640 40.000 13.26 3.31 0.00 2.69
2011 2121 5.127031 ACCCACCAAAAATCCGATATCTTTG 59.873 40.000 0.34 4.53 0.00 2.77
2012 2122 5.269189 ACCCACCAAAAATCCGATATCTTT 58.731 37.500 0.34 0.00 0.00 2.52
2013 2123 4.867086 ACCCACCAAAAATCCGATATCTT 58.133 39.130 0.34 0.00 0.00 2.40
2014 2124 4.166144 AGACCCACCAAAAATCCGATATCT 59.834 41.667 0.34 0.00 0.00 1.98
2015 2125 4.275936 CAGACCCACCAAAAATCCGATATC 59.724 45.833 0.00 0.00 0.00 1.63
2016 2126 4.207165 CAGACCCACCAAAAATCCGATAT 58.793 43.478 0.00 0.00 0.00 1.63
2017 2127 3.009695 ACAGACCCACCAAAAATCCGATA 59.990 43.478 0.00 0.00 0.00 2.92
2018 2128 2.225017 ACAGACCCACCAAAAATCCGAT 60.225 45.455 0.00 0.00 0.00 4.18
2019 2129 1.144093 ACAGACCCACCAAAAATCCGA 59.856 47.619 0.00 0.00 0.00 4.55
2020 2130 1.539827 GACAGACCCACCAAAAATCCG 59.460 52.381 0.00 0.00 0.00 4.18
2021 2131 2.593026 TGACAGACCCACCAAAAATCC 58.407 47.619 0.00 0.00 0.00 3.01
2022 2132 4.524328 AGAATGACAGACCCACCAAAAATC 59.476 41.667 0.00 0.00 0.00 2.17
2023 2133 4.482990 AGAATGACAGACCCACCAAAAAT 58.517 39.130 0.00 0.00 0.00 1.82
2024 2134 3.909732 AGAATGACAGACCCACCAAAAA 58.090 40.909 0.00 0.00 0.00 1.94
2025 2135 3.593442 AGAATGACAGACCCACCAAAA 57.407 42.857 0.00 0.00 0.00 2.44
2026 2136 3.593442 AAGAATGACAGACCCACCAAA 57.407 42.857 0.00 0.00 0.00 3.28
2027 2137 3.138283 AGAAAGAATGACAGACCCACCAA 59.862 43.478 0.00 0.00 0.00 3.67
2028 2138 2.711009 AGAAAGAATGACAGACCCACCA 59.289 45.455 0.00 0.00 0.00 4.17
2029 2139 3.077359 CAGAAAGAATGACAGACCCACC 58.923 50.000 0.00 0.00 0.00 4.61
2030 2140 3.744660 ACAGAAAGAATGACAGACCCAC 58.255 45.455 0.00 0.00 0.00 4.61
2031 2141 3.390967 TGACAGAAAGAATGACAGACCCA 59.609 43.478 0.00 0.00 0.00 4.51
2032 2142 3.999663 CTGACAGAAAGAATGACAGACCC 59.000 47.826 0.00 0.00 41.13 4.46
2033 2143 4.636249 ACTGACAGAAAGAATGACAGACC 58.364 43.478 10.08 0.00 41.13 3.85
2034 2144 5.755375 TCAACTGACAGAAAGAATGACAGAC 59.245 40.000 10.08 0.00 41.13 3.51
2035 2145 5.755375 GTCAACTGACAGAAAGAATGACAGA 59.245 40.000 10.08 0.00 44.18 3.41
2036 2146 5.983475 GTCAACTGACAGAAAGAATGACAG 58.017 41.667 10.08 4.33 44.18 3.51
2037 2147 5.991328 GTCAACTGACAGAAAGAATGACA 57.009 39.130 10.08 0.00 44.18 3.58
2050 2160 9.865484 GACTTTGTTAAATCTTAGTCAACTGAC 57.135 33.333 1.40 1.40 45.08 3.51
2051 2161 9.832445 AGACTTTGTTAAATCTTAGTCAACTGA 57.168 29.630 0.00 0.00 35.61 3.41
2109 2219 9.720769 AGATCCGTGTAAAATTTTCTTTCTAGA 57.279 29.630 6.72 0.00 0.00 2.43
2110 2220 9.974750 GAGATCCGTGTAAAATTTTCTTTCTAG 57.025 33.333 6.72 0.00 0.00 2.43
2111 2221 8.943002 GGAGATCCGTGTAAAATTTTCTTTCTA 58.057 33.333 6.72 0.00 0.00 2.10
2112 2222 7.447238 TGGAGATCCGTGTAAAATTTTCTTTCT 59.553 33.333 6.72 2.08 39.43 2.52
2113 2223 7.590279 TGGAGATCCGTGTAAAATTTTCTTTC 58.410 34.615 6.72 0.00 39.43 2.62
2114 2224 7.519032 TGGAGATCCGTGTAAAATTTTCTTT 57.481 32.000 6.72 0.00 39.43 2.52
2115 2225 7.538575 CATGGAGATCCGTGTAAAATTTTCTT 58.461 34.615 6.72 0.00 45.66 2.52
2116 2226 7.088589 CATGGAGATCCGTGTAAAATTTTCT 57.911 36.000 6.72 0.00 45.66 2.52
2128 2238 0.179100 CGTCTTGCATGGAGATCCGT 60.179 55.000 0.00 0.00 39.43 4.69
2129 2239 0.103026 TCGTCTTGCATGGAGATCCG 59.897 55.000 0.00 0.00 39.43 4.18
2130 2240 1.137872 AGTCGTCTTGCATGGAGATCC 59.862 52.381 0.00 0.00 0.00 3.36
2131 2241 2.159184 TCAGTCGTCTTGCATGGAGATC 60.159 50.000 0.00 0.00 0.00 2.75
2132 2242 1.827344 TCAGTCGTCTTGCATGGAGAT 59.173 47.619 0.00 0.00 0.00 2.75
2133 2243 1.203287 CTCAGTCGTCTTGCATGGAGA 59.797 52.381 0.00 0.00 0.00 3.71
2134 2244 1.203287 TCTCAGTCGTCTTGCATGGAG 59.797 52.381 0.00 0.00 0.00 3.86
2135 2245 1.067565 GTCTCAGTCGTCTTGCATGGA 60.068 52.381 0.00 0.00 0.00 3.41
2136 2246 1.337167 TGTCTCAGTCGTCTTGCATGG 60.337 52.381 0.00 0.00 0.00 3.66
2137 2247 2.070262 TGTCTCAGTCGTCTTGCATG 57.930 50.000 0.00 0.00 0.00 4.06
2138 2248 4.456280 TTATGTCTCAGTCGTCTTGCAT 57.544 40.909 0.00 0.00 0.00 3.96
2139 2249 3.934457 TTATGTCTCAGTCGTCTTGCA 57.066 42.857 0.00 0.00 0.00 4.08
2140 2250 4.424626 TGATTATGTCTCAGTCGTCTTGC 58.575 43.478 0.00 0.00 0.00 4.01
2141 2251 6.096036 ACTTGATTATGTCTCAGTCGTCTTG 58.904 40.000 0.00 0.00 0.00 3.02
2142 2252 6.151985 AGACTTGATTATGTCTCAGTCGTCTT 59.848 38.462 0.67 0.00 40.22 3.01
2143 2253 5.650266 AGACTTGATTATGTCTCAGTCGTCT 59.350 40.000 0.67 0.00 40.22 4.18
2144 2254 5.885881 AGACTTGATTATGTCTCAGTCGTC 58.114 41.667 0.67 0.00 40.22 4.20
2145 2255 5.906113 AGACTTGATTATGTCTCAGTCGT 57.094 39.130 0.67 0.00 40.22 4.34
2152 2262 5.885881 GTCGACTGAGACTTGATTATGTCT 58.114 41.667 8.70 5.81 42.18 3.41
2164 2274 5.881447 TGCTAAATCTTAGTCGACTGAGAC 58.119 41.667 34.32 23.69 40.68 3.36
2165 2275 6.510879 TTGCTAAATCTTAGTCGACTGAGA 57.489 37.500 33.88 33.88 41.83 3.27
2166 2276 6.292061 GCATTGCTAAATCTTAGTCGACTGAG 60.292 42.308 26.80 26.80 0.00 3.35
2167 2277 5.520288 GCATTGCTAAATCTTAGTCGACTGA 59.480 40.000 28.12 19.13 0.00 3.41
2168 2278 5.521735 AGCATTGCTAAATCTTAGTCGACTG 59.478 40.000 28.12 12.46 36.99 3.51
2169 2279 5.521735 CAGCATTGCTAAATCTTAGTCGACT 59.478 40.000 23.66 23.66 36.40 4.18
2170 2280 5.520288 TCAGCATTGCTAAATCTTAGTCGAC 59.480 40.000 11.55 7.70 36.40 4.20
2171 2281 5.660460 TCAGCATTGCTAAATCTTAGTCGA 58.340 37.500 11.55 0.00 36.40 4.20
2172 2282 5.973651 TCAGCATTGCTAAATCTTAGTCG 57.026 39.130 11.55 0.00 36.40 4.18
2200 2310 9.846248 GAAAGCACATAACTTCAATAGATGTTT 57.154 29.630 0.00 0.00 41.01 2.83
2201 2311 9.013229 TGAAAGCACATAACTTCAATAGATGTT 57.987 29.630 0.00 0.00 42.61 2.71
2202 2312 8.565896 TGAAAGCACATAACTTCAATAGATGT 57.434 30.769 0.00 0.00 33.96 3.06
2208 2318 9.768662 AAGAAAATGAAAGCACATAACTTCAAT 57.231 25.926 0.00 0.00 0.00 2.57
2209 2319 9.598517 AAAGAAAATGAAAGCACATAACTTCAA 57.401 25.926 0.00 0.00 0.00 2.69
2210 2320 9.033481 CAAAGAAAATGAAAGCACATAACTTCA 57.967 29.630 0.00 0.00 0.00 3.02
2211 2321 9.034544 ACAAAGAAAATGAAAGCACATAACTTC 57.965 29.630 0.00 0.00 0.00 3.01
2212 2322 8.947055 ACAAAGAAAATGAAAGCACATAACTT 57.053 26.923 0.00 0.00 0.00 2.66
2213 2323 8.947055 AACAAAGAAAATGAAAGCACATAACT 57.053 26.923 0.00 0.00 0.00 2.24
2214 2324 7.998212 CGAACAAAGAAAATGAAAGCACATAAC 59.002 33.333 0.00 0.00 0.00 1.89
2215 2325 7.704472 ACGAACAAAGAAAATGAAAGCACATAA 59.296 29.630 0.00 0.00 0.00 1.90
2216 2326 7.199766 ACGAACAAAGAAAATGAAAGCACATA 58.800 30.769 0.00 0.00 0.00 2.29
2217 2327 6.042143 ACGAACAAAGAAAATGAAAGCACAT 58.958 32.000 0.00 0.00 0.00 3.21
2218 2328 5.406649 ACGAACAAAGAAAATGAAAGCACA 58.593 33.333 0.00 0.00 0.00 4.57
2219 2329 5.949233 ACGAACAAAGAAAATGAAAGCAC 57.051 34.783 0.00 0.00 0.00 4.40
2220 2330 8.641499 AATAACGAACAAAGAAAATGAAAGCA 57.359 26.923 0.00 0.00 0.00 3.91
2221 2331 9.914923 AAAATAACGAACAAAGAAAATGAAAGC 57.085 25.926 0.00 0.00 0.00 3.51
2225 2335 8.324567 GCACAAAATAACGAACAAAGAAAATGA 58.675 29.630 0.00 0.00 0.00 2.57
2226 2336 8.327429 AGCACAAAATAACGAACAAAGAAAATG 58.673 29.630 0.00 0.00 0.00 2.32
2227 2337 8.419076 AGCACAAAATAACGAACAAAGAAAAT 57.581 26.923 0.00 0.00 0.00 1.82
2228 2338 7.820044 AGCACAAAATAACGAACAAAGAAAA 57.180 28.000 0.00 0.00 0.00 2.29
2229 2339 8.399425 TCTAGCACAAAATAACGAACAAAGAAA 58.601 29.630 0.00 0.00 0.00 2.52
2230 2340 7.921787 TCTAGCACAAAATAACGAACAAAGAA 58.078 30.769 0.00 0.00 0.00 2.52
2231 2341 7.485418 TCTAGCACAAAATAACGAACAAAGA 57.515 32.000 0.00 0.00 0.00 2.52
2232 2342 7.855904 AGTTCTAGCACAAAATAACGAACAAAG 59.144 33.333 0.00 0.00 33.79 2.77
2233 2343 7.699566 AGTTCTAGCACAAAATAACGAACAAA 58.300 30.769 0.00 0.00 33.79 2.83
2234 2344 7.254227 AGTTCTAGCACAAAATAACGAACAA 57.746 32.000 0.00 0.00 33.79 2.83
2235 2345 6.854496 AGTTCTAGCACAAAATAACGAACA 57.146 33.333 0.00 0.00 33.79 3.18
2236 2346 8.236084 TCTAGTTCTAGCACAAAATAACGAAC 57.764 34.615 0.00 0.00 0.00 3.95
2237 2347 8.821147 TTCTAGTTCTAGCACAAAATAACGAA 57.179 30.769 0.00 0.00 0.00 3.85
2238 2348 8.821147 TTTCTAGTTCTAGCACAAAATAACGA 57.179 30.769 0.00 0.00 0.00 3.85
2253 2363 9.780186 CGGAGGGAATATTAAATTTCTAGTTCT 57.220 33.333 0.00 0.00 0.00 3.01
2254 2364 9.774413 TCGGAGGGAATATTAAATTTCTAGTTC 57.226 33.333 0.00 0.00 0.00 3.01
2256 2366 9.945904 GATCGGAGGGAATATTAAATTTCTAGT 57.054 33.333 0.00 0.00 0.00 2.57
2257 2367 9.384764 GGATCGGAGGGAATATTAAATTTCTAG 57.615 37.037 0.00 0.00 0.00 2.43
2258 2368 8.886369 TGGATCGGAGGGAATATTAAATTTCTA 58.114 33.333 0.00 0.00 0.00 2.10
2259 2369 7.755618 TGGATCGGAGGGAATATTAAATTTCT 58.244 34.615 0.00 0.00 0.00 2.52
2260 2370 7.996098 TGGATCGGAGGGAATATTAAATTTC 57.004 36.000 0.00 0.00 0.00 2.17
2265 2375 9.502035 ACTAATATGGATCGGAGGGAATATTAA 57.498 33.333 0.00 0.00 0.00 1.40
2266 2376 9.502035 AACTAATATGGATCGGAGGGAATATTA 57.498 33.333 0.00 0.00 0.00 0.98
2267 2377 7.996758 ACTAATATGGATCGGAGGGAATATT 57.003 36.000 0.00 0.00 0.00 1.28
2268 2378 7.996758 AACTAATATGGATCGGAGGGAATAT 57.003 36.000 0.00 0.00 0.00 1.28
2270 2380 7.996758 ATAACTAATATGGATCGGAGGGAAT 57.003 36.000 0.00 0.00 0.00 3.01
2271 2381 7.069578 GCTATAACTAATATGGATCGGAGGGAA 59.930 40.741 0.00 0.00 0.00 3.97
2272 2382 6.550108 GCTATAACTAATATGGATCGGAGGGA 59.450 42.308 0.00 0.00 0.00 4.20
2273 2383 6.323996 TGCTATAACTAATATGGATCGGAGGG 59.676 42.308 0.00 0.00 0.00 4.30
2274 2384 7.348080 TGCTATAACTAATATGGATCGGAGG 57.652 40.000 0.00 0.00 0.00 4.30
2275 2385 6.920758 GCTGCTATAACTAATATGGATCGGAG 59.079 42.308 0.00 0.00 0.00 4.63
2276 2386 6.607600 AGCTGCTATAACTAATATGGATCGGA 59.392 38.462 0.00 0.00 0.00 4.55
2277 2387 6.810911 AGCTGCTATAACTAATATGGATCGG 58.189 40.000 0.00 0.00 0.00 4.18
2278 2388 8.709386 AAAGCTGCTATAACTAATATGGATCG 57.291 34.615 0.90 0.00 0.00 3.69
2284 2394 9.726438 CCCAACTAAAGCTGCTATAACTAATAT 57.274 33.333 0.90 0.00 0.00 1.28
2285 2395 8.930527 TCCCAACTAAAGCTGCTATAACTAATA 58.069 33.333 0.90 0.00 0.00 0.98
2286 2396 7.802117 TCCCAACTAAAGCTGCTATAACTAAT 58.198 34.615 0.90 0.00 0.00 1.73
2287 2397 7.093024 ACTCCCAACTAAAGCTGCTATAACTAA 60.093 37.037 0.90 0.00 0.00 2.24
2288 2398 6.383147 ACTCCCAACTAAAGCTGCTATAACTA 59.617 38.462 0.90 0.00 0.00 2.24
2289 2399 5.189934 ACTCCCAACTAAAGCTGCTATAACT 59.810 40.000 0.90 0.00 0.00 2.24
2290 2400 5.429130 ACTCCCAACTAAAGCTGCTATAAC 58.571 41.667 0.90 0.00 0.00 1.89
2291 2401 5.693769 ACTCCCAACTAAAGCTGCTATAA 57.306 39.130 0.90 0.00 0.00 0.98
2292 2402 6.996180 ATACTCCCAACTAAAGCTGCTATA 57.004 37.500 0.90 0.00 0.00 1.31
2293 2403 5.896073 ATACTCCCAACTAAAGCTGCTAT 57.104 39.130 0.90 0.00 0.00 2.97
2294 2404 6.155565 TGTTATACTCCCAACTAAAGCTGCTA 59.844 38.462 0.90 0.00 0.00 3.49
2295 2405 5.045869 TGTTATACTCCCAACTAAAGCTGCT 60.046 40.000 0.00 0.00 0.00 4.24
2296 2406 5.183228 TGTTATACTCCCAACTAAAGCTGC 58.817 41.667 0.00 0.00 0.00 5.25
2297 2407 7.865706 ATTGTTATACTCCCAACTAAAGCTG 57.134 36.000 0.00 0.00 0.00 4.24
2302 2412 8.308931 CGGCTATATTGTTATACTCCCAACTAA 58.691 37.037 0.00 0.00 0.00 2.24
2303 2413 7.093640 CCGGCTATATTGTTATACTCCCAACTA 60.094 40.741 0.00 0.00 0.00 2.24
2304 2414 6.295688 CCGGCTATATTGTTATACTCCCAACT 60.296 42.308 0.00 0.00 0.00 3.16
2305 2415 5.873164 CCGGCTATATTGTTATACTCCCAAC 59.127 44.000 0.00 0.00 0.00 3.77
2306 2416 5.046159 CCCGGCTATATTGTTATACTCCCAA 60.046 44.000 0.00 0.00 0.00 4.12
2307 2417 4.468510 CCCGGCTATATTGTTATACTCCCA 59.531 45.833 0.00 0.00 0.00 4.37
2308 2418 4.713321 TCCCGGCTATATTGTTATACTCCC 59.287 45.833 0.00 0.00 0.00 4.30
2309 2419 5.655532 TCTCCCGGCTATATTGTTATACTCC 59.344 44.000 0.00 0.00 0.00 3.85
2310 2420 6.770746 TCTCCCGGCTATATTGTTATACTC 57.229 41.667 0.00 0.00 0.00 2.59
2311 2421 7.384477 GTTTCTCCCGGCTATATTGTTATACT 58.616 38.462 0.00 0.00 0.00 2.12
2312 2422 6.592994 GGTTTCTCCCGGCTATATTGTTATAC 59.407 42.308 0.00 0.00 0.00 1.47
2313 2423 6.704310 GGTTTCTCCCGGCTATATTGTTATA 58.296 40.000 0.00 0.00 0.00 0.98
2314 2424 5.557866 GGTTTCTCCCGGCTATATTGTTAT 58.442 41.667 0.00 0.00 0.00 1.89
2315 2425 4.964593 GGTTTCTCCCGGCTATATTGTTA 58.035 43.478 0.00 0.00 0.00 2.41
2316 2426 3.816994 GGTTTCTCCCGGCTATATTGTT 58.183 45.455 0.00 0.00 0.00 2.83
2317 2427 3.487120 GGTTTCTCCCGGCTATATTGT 57.513 47.619 0.00 0.00 0.00 2.71
2382 2492 8.675504 CGAGGAAGTAGACAGTTATTTAGAAGA 58.324 37.037 0.00 0.00 0.00 2.87
2383 2493 7.432838 GCGAGGAAGTAGACAGTTATTTAGAAG 59.567 40.741 0.00 0.00 0.00 2.85
2384 2494 7.256286 GCGAGGAAGTAGACAGTTATTTAGAA 58.744 38.462 0.00 0.00 0.00 2.10
2385 2495 6.183360 GGCGAGGAAGTAGACAGTTATTTAGA 60.183 42.308 0.00 0.00 0.00 2.10
2386 2496 5.978322 GGCGAGGAAGTAGACAGTTATTTAG 59.022 44.000 0.00 0.00 0.00 1.85
2387 2497 5.655532 AGGCGAGGAAGTAGACAGTTATTTA 59.344 40.000 0.00 0.00 0.00 1.40
2388 2498 4.466726 AGGCGAGGAAGTAGACAGTTATTT 59.533 41.667 0.00 0.00 0.00 1.40
2389 2499 4.024670 AGGCGAGGAAGTAGACAGTTATT 58.975 43.478 0.00 0.00 0.00 1.40
2390 2500 3.633418 AGGCGAGGAAGTAGACAGTTAT 58.367 45.455 0.00 0.00 0.00 1.89
2391 2501 3.083122 AGGCGAGGAAGTAGACAGTTA 57.917 47.619 0.00 0.00 0.00 2.24
2392 2502 1.926108 AGGCGAGGAAGTAGACAGTT 58.074 50.000 0.00 0.00 0.00 3.16
2393 2503 1.926108 AAGGCGAGGAAGTAGACAGT 58.074 50.000 0.00 0.00 0.00 3.55
2394 2504 3.320673 AAAAGGCGAGGAAGTAGACAG 57.679 47.619 0.00 0.00 0.00 3.51
2395 2505 3.764237 AAAAAGGCGAGGAAGTAGACA 57.236 42.857 0.00 0.00 0.00 3.41
2413 2523 6.257849 GCATGGAGATAGTACATCGACAAAAA 59.742 38.462 0.00 0.00 0.00 1.94
2414 2524 5.753438 GCATGGAGATAGTACATCGACAAAA 59.247 40.000 0.00 0.00 0.00 2.44
2415 2525 5.069119 AGCATGGAGATAGTACATCGACAAA 59.931 40.000 0.00 0.00 0.00 2.83
2416 2526 4.584743 AGCATGGAGATAGTACATCGACAA 59.415 41.667 0.00 0.00 0.00 3.18
2417 2527 4.145052 AGCATGGAGATAGTACATCGACA 58.855 43.478 0.00 2.33 0.00 4.35
2418 2528 4.775058 AGCATGGAGATAGTACATCGAC 57.225 45.455 0.00 0.00 0.00 4.20
2419 2529 5.791336 AAAGCATGGAGATAGTACATCGA 57.209 39.130 0.00 0.00 0.00 3.59
2420 2530 6.479990 TGAAAAAGCATGGAGATAGTACATCG 59.520 38.462 0.00 0.00 0.00 3.84
2421 2531 7.497249 ACTGAAAAAGCATGGAGATAGTACATC 59.503 37.037 0.00 0.00 0.00 3.06
2422 2532 7.281774 CACTGAAAAAGCATGGAGATAGTACAT 59.718 37.037 0.00 0.00 0.00 2.29
2423 2533 6.595326 CACTGAAAAAGCATGGAGATAGTACA 59.405 38.462 0.00 0.00 0.00 2.90
2424 2534 6.595716 ACACTGAAAAAGCATGGAGATAGTAC 59.404 38.462 0.00 0.00 0.00 2.73
2425 2535 6.711277 ACACTGAAAAAGCATGGAGATAGTA 58.289 36.000 0.00 0.00 0.00 1.82
2426 2536 5.564550 ACACTGAAAAAGCATGGAGATAGT 58.435 37.500 0.00 0.00 0.00 2.12
2427 2537 6.072286 ACAACACTGAAAAAGCATGGAGATAG 60.072 38.462 0.00 0.00 0.00 2.08
2428 2538 5.769662 ACAACACTGAAAAAGCATGGAGATA 59.230 36.000 0.00 0.00 0.00 1.98
2429 2539 4.586001 ACAACACTGAAAAAGCATGGAGAT 59.414 37.500 0.00 0.00 0.00 2.75
2430 2540 3.953612 ACAACACTGAAAAAGCATGGAGA 59.046 39.130 0.00 0.00 0.00 3.71
2431 2541 4.046462 CACAACACTGAAAAAGCATGGAG 58.954 43.478 0.00 0.00 0.00 3.86
2432 2542 3.737663 GCACAACACTGAAAAAGCATGGA 60.738 43.478 0.00 0.00 0.00 3.41
2433 2543 2.540931 GCACAACACTGAAAAAGCATGG 59.459 45.455 0.00 0.00 0.00 3.66
2434 2544 3.188492 TGCACAACACTGAAAAAGCATG 58.812 40.909 0.00 0.00 0.00 4.06
2435 2545 3.523606 TGCACAACACTGAAAAAGCAT 57.476 38.095 0.00 0.00 0.00 3.79
2436 2546 2.992543 GTTGCACAACACTGAAAAAGCA 59.007 40.909 8.61 0.00 40.84 3.91
2437 2547 3.253230 AGTTGCACAACACTGAAAAAGC 58.747 40.909 15.40 0.00 43.47 3.51
2438 2548 3.543494 CGAGTTGCACAACACTGAAAAAG 59.457 43.478 15.40 0.00 43.47 2.27
2439 2549 3.497118 CGAGTTGCACAACACTGAAAAA 58.503 40.909 15.40 0.00 43.47 1.94
2440 2550 2.730715 GCGAGTTGCACAACACTGAAAA 60.731 45.455 15.40 0.00 45.45 2.29
2441 2551 1.202132 GCGAGTTGCACAACACTGAAA 60.202 47.619 15.40 0.00 45.45 2.69
2442 2552 0.376852 GCGAGTTGCACAACACTGAA 59.623 50.000 15.40 0.00 45.45 3.02
2443 2553 2.013807 GCGAGTTGCACAACACTGA 58.986 52.632 15.40 0.00 45.45 3.41
2444 2554 4.595629 GCGAGTTGCACAACACTG 57.404 55.556 15.40 5.93 45.45 3.66
2453 2563 1.001268 TCGATCTCTATGGCGAGTTGC 60.001 52.381 0.00 0.00 45.38 4.17
2454 2564 3.240884 CATCGATCTCTATGGCGAGTTG 58.759 50.000 0.00 0.00 36.12 3.16
2455 2565 2.352225 GCATCGATCTCTATGGCGAGTT 60.352 50.000 0.00 0.00 36.12 3.01
2456 2566 1.201181 GCATCGATCTCTATGGCGAGT 59.799 52.381 0.00 0.00 36.12 4.18
2457 2567 1.200948 TGCATCGATCTCTATGGCGAG 59.799 52.381 0.00 0.00 36.12 5.03
2458 2568 1.068264 GTGCATCGATCTCTATGGCGA 60.068 52.381 0.00 0.00 37.17 5.54
2459 2569 1.336240 TGTGCATCGATCTCTATGGCG 60.336 52.381 0.00 0.00 0.00 5.69
2460 2570 2.445565 TGTGCATCGATCTCTATGGC 57.554 50.000 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.