Multiple sequence alignment - TraesCS3D01G242000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G242000 chr3D 100.000 3241 0 0 1 3241 336830104 336833344 0.000000e+00 5986.0
1 TraesCS3D01G242000 chr3D 96.000 300 12 0 166 465 159510153 159510452 3.760000e-134 488.0
2 TraesCS3D01G242000 chr3A 95.380 736 29 3 1975 2709 454172041 454172772 0.000000e+00 1166.0
3 TraesCS3D01G242000 chr3A 92.328 769 40 7 465 1215 454170596 454171363 0.000000e+00 1075.0
4 TraesCS3D01G242000 chr3A 97.736 530 12 0 2712 3241 668874380 668873851 0.000000e+00 913.0
5 TraesCS3D01G242000 chr3A 89.163 729 52 13 1236 1962 454171354 454172057 0.000000e+00 883.0
6 TraesCS3D01G242000 chr3A 95.385 65 1 2 33 95 454170498 454170562 5.720000e-18 102.0
7 TraesCS3D01G242000 chr3A 97.778 45 1 0 123 167 454170548 454170592 9.640000e-11 78.7
8 TraesCS3D01G242000 chr3B 90.049 814 56 12 1237 2047 434668773 434669564 0.000000e+00 1031.0
9 TraesCS3D01G242000 chr3B 87.788 565 32 7 2182 2711 434669634 434670196 7.630000e-176 627.0
10 TraesCS3D01G242000 chr3B 79.584 529 94 10 2713 3233 825602322 825602844 1.840000e-97 366.0
11 TraesCS3D01G242000 chr3B 96.552 58 2 0 508 565 434667736 434667793 2.660000e-16 97.1
12 TraesCS3D01G242000 chr6D 96.667 300 9 1 166 465 59070710 59071008 6.240000e-137 497.0
13 TraesCS3D01G242000 chr6D 96.599 294 10 0 166 459 93553156 93553449 3.760000e-134 488.0
14 TraesCS3D01G242000 chrUn 95.710 303 13 0 166 468 122421294 122420992 3.760000e-134 488.0
15 TraesCS3D01G242000 chr6A 95.987 299 12 0 166 464 464388845 464388547 1.350000e-133 486.0
16 TraesCS3D01G242000 chr5D 95.987 299 12 0 166 464 282753910 282754208 1.350000e-133 486.0
17 TraesCS3D01G242000 chr4D 95.960 297 12 0 165 461 29449334 29449630 1.750000e-132 483.0
18 TraesCS3D01G242000 chr1D 95.960 297 11 1 166 462 334449739 334450034 6.290000e-132 481.0
19 TraesCS3D01G242000 chr7D 95.066 304 15 0 166 469 203689713 203689410 2.260000e-131 479.0
20 TraesCS3D01G242000 chr7B 82.184 522 93 0 2709 3230 739447339 739447860 1.770000e-122 449.0
21 TraesCS3D01G242000 chr4B 80.132 453 80 8 2786 3233 563791548 563791995 2.410000e-86 329.0
22 TraesCS3D01G242000 chr4A 78.571 112 20 4 2713 2822 488523780 488523889 1.610000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G242000 chr3D 336830104 336833344 3240 False 5986.000000 5986 100.0000 1 3241 1 chr3D.!!$F2 3240
1 TraesCS3D01G242000 chr3A 668873851 668874380 529 True 913.000000 913 97.7360 2712 3241 1 chr3A.!!$R1 529
2 TraesCS3D01G242000 chr3A 454170498 454172772 2274 False 660.940000 1166 94.0068 33 2709 5 chr3A.!!$F1 2676
3 TraesCS3D01G242000 chr3B 434667736 434670196 2460 False 585.033333 1031 91.4630 508 2711 3 chr3B.!!$F2 2203
4 TraesCS3D01G242000 chr3B 825602322 825602844 522 False 366.000000 366 79.5840 2713 3233 1 chr3B.!!$F1 520
5 TraesCS3D01G242000 chr7B 739447339 739447860 521 False 449.000000 449 82.1840 2709 3230 1 chr7B.!!$F1 521

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
414 417 0.036306 TTTTCCTCTCCGCCTTGGTC 59.964 55.0 0.0 0.0 39.52 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2267 2895 0.239879 GCAGAACCGCGATTTTTCCA 59.76 50.0 8.23 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.694177 CTTTTTCTTGCATTTGATGTGCG 58.306 39.130 0.00 0.00 45.37 5.34
23 24 1.700523 TTCTTGCATTTGATGTGCGC 58.299 45.000 0.00 0.00 45.37 6.09
24 25 0.597072 TCTTGCATTTGATGTGCGCA 59.403 45.000 5.66 5.66 45.37 6.09
25 26 0.989164 CTTGCATTTGATGTGCGCAG 59.011 50.000 12.22 0.00 45.37 5.18
26 27 0.314618 TTGCATTTGATGTGCGCAGT 59.685 45.000 12.22 1.40 45.37 4.40
27 28 1.163554 TGCATTTGATGTGCGCAGTA 58.836 45.000 12.22 2.74 45.37 2.74
28 29 1.135717 TGCATTTGATGTGCGCAGTAC 60.136 47.619 12.22 5.41 45.37 2.73
29 30 1.131126 GCATTTGATGTGCGCAGTACT 59.869 47.619 12.22 0.00 45.46 2.73
30 31 2.351418 GCATTTGATGTGCGCAGTACTA 59.649 45.455 12.22 0.00 45.46 1.82
31 32 3.544834 GCATTTGATGTGCGCAGTACTAG 60.545 47.826 12.22 0.00 45.46 2.57
43 44 5.067283 TGCGCAGTACTAGTTATTGAGATGA 59.933 40.000 5.66 0.00 0.00 2.92
74 77 8.202461 TCTTCTTTCCTAATCTGGTTCAGTTA 57.798 34.615 0.00 0.00 32.61 2.24
84 87 5.086104 TCTGGTTCAGTTATTAGTGGCTC 57.914 43.478 0.00 0.00 32.61 4.70
85 88 4.777896 TCTGGTTCAGTTATTAGTGGCTCT 59.222 41.667 0.00 0.00 32.61 4.09
86 89 4.832248 TGGTTCAGTTATTAGTGGCTCTG 58.168 43.478 0.00 0.00 0.00 3.35
87 90 4.192317 GGTTCAGTTATTAGTGGCTCTGG 58.808 47.826 0.00 0.00 0.00 3.86
88 91 4.323562 GGTTCAGTTATTAGTGGCTCTGGT 60.324 45.833 0.00 0.00 0.00 4.00
89 92 5.246307 GTTCAGTTATTAGTGGCTCTGGTT 58.754 41.667 0.00 0.00 0.00 3.67
90 93 5.086104 TCAGTTATTAGTGGCTCTGGTTC 57.914 43.478 0.00 0.00 0.00 3.62
91 94 4.530553 TCAGTTATTAGTGGCTCTGGTTCA 59.469 41.667 0.00 0.00 0.00 3.18
92 95 4.872691 CAGTTATTAGTGGCTCTGGTTCAG 59.127 45.833 0.00 0.00 0.00 3.02
93 96 2.409948 ATTAGTGGCTCTGGTTCAGC 57.590 50.000 0.00 0.00 36.02 4.26
94 97 1.352083 TTAGTGGCTCTGGTTCAGCT 58.648 50.000 0.00 0.00 37.05 4.24
95 98 1.352083 TAGTGGCTCTGGTTCAGCTT 58.648 50.000 0.00 0.00 37.05 3.74
96 99 0.475906 AGTGGCTCTGGTTCAGCTTT 59.524 50.000 0.00 0.00 37.05 3.51
97 100 1.133668 AGTGGCTCTGGTTCAGCTTTT 60.134 47.619 0.00 0.00 37.05 2.27
98 101 1.683385 GTGGCTCTGGTTCAGCTTTTT 59.317 47.619 0.00 0.00 37.05 1.94
137 140 2.177594 CTCCGGCTCTGGTTCAGCTT 62.178 60.000 0.00 0.00 37.05 3.74
183 186 9.892130 ATTTATTTTACTTCCTCTGTCTAGGTG 57.108 33.333 0.00 0.00 37.91 4.00
184 187 6.936968 ATTTTACTTCCTCTGTCTAGGTGT 57.063 37.500 0.00 0.00 37.91 4.16
185 188 5.723672 TTTACTTCCTCTGTCTAGGTGTG 57.276 43.478 0.00 0.00 37.91 3.82
186 189 3.246416 ACTTCCTCTGTCTAGGTGTGT 57.754 47.619 0.00 0.00 37.91 3.72
187 190 4.383931 ACTTCCTCTGTCTAGGTGTGTA 57.616 45.455 0.00 0.00 37.91 2.90
188 191 4.737578 ACTTCCTCTGTCTAGGTGTGTAA 58.262 43.478 0.00 0.00 37.91 2.41
189 192 4.767928 ACTTCCTCTGTCTAGGTGTGTAAG 59.232 45.833 0.00 0.00 37.91 2.34
190 193 4.383931 TCCTCTGTCTAGGTGTGTAAGT 57.616 45.455 0.00 0.00 37.91 2.24
191 194 4.333690 TCCTCTGTCTAGGTGTGTAAGTC 58.666 47.826 0.00 0.00 37.91 3.01
192 195 4.079970 CCTCTGTCTAGGTGTGTAAGTCA 58.920 47.826 0.00 0.00 31.46 3.41
193 196 4.082679 CCTCTGTCTAGGTGTGTAAGTCAC 60.083 50.000 0.00 0.00 46.31 3.67
207 210 5.989551 GTAAGTCACCTTACGAAAACCAA 57.010 39.130 0.00 0.00 42.56 3.67
208 211 6.362210 GTAAGTCACCTTACGAAAACCAAA 57.638 37.500 0.00 0.00 42.56 3.28
209 212 6.962686 GTAAGTCACCTTACGAAAACCAAAT 58.037 36.000 0.00 0.00 42.56 2.32
210 213 8.086851 GTAAGTCACCTTACGAAAACCAAATA 57.913 34.615 0.00 0.00 42.56 1.40
211 214 7.571080 AAGTCACCTTACGAAAACCAAATAA 57.429 32.000 0.00 0.00 0.00 1.40
212 215 7.754851 AGTCACCTTACGAAAACCAAATAAT 57.245 32.000 0.00 0.00 0.00 1.28
213 216 8.173542 AGTCACCTTACGAAAACCAAATAATT 57.826 30.769 0.00 0.00 0.00 1.40
214 217 8.294577 AGTCACCTTACGAAAACCAAATAATTC 58.705 33.333 0.00 0.00 0.00 2.17
215 218 7.539710 GTCACCTTACGAAAACCAAATAATTCC 59.460 37.037 0.00 0.00 0.00 3.01
216 219 7.230913 TCACCTTACGAAAACCAAATAATTCCA 59.769 33.333 0.00 0.00 0.00 3.53
217 220 7.868415 CACCTTACGAAAACCAAATAATTCCAA 59.132 33.333 0.00 0.00 0.00 3.53
218 221 8.422566 ACCTTACGAAAACCAAATAATTCCAAA 58.577 29.630 0.00 0.00 0.00 3.28
219 222 9.262358 CCTTACGAAAACCAAATAATTCCAAAA 57.738 29.630 0.00 0.00 0.00 2.44
221 224 9.595823 TTACGAAAACCAAATAATTCCAAAACA 57.404 25.926 0.00 0.00 0.00 2.83
222 225 7.911343 ACGAAAACCAAATAATTCCAAAACAC 58.089 30.769 0.00 0.00 0.00 3.32
223 226 7.766738 ACGAAAACCAAATAATTCCAAAACACT 59.233 29.630 0.00 0.00 0.00 3.55
224 227 8.608317 CGAAAACCAAATAATTCCAAAACACTT 58.392 29.630 0.00 0.00 0.00 3.16
227 230 9.554395 AAACCAAATAATTCCAAAACACTTAGG 57.446 29.630 0.00 0.00 0.00 2.69
228 231 7.158697 ACCAAATAATTCCAAAACACTTAGGC 58.841 34.615 0.00 0.00 0.00 3.93
229 232 7.158021 CCAAATAATTCCAAAACACTTAGGCA 58.842 34.615 0.00 0.00 0.00 4.75
230 233 7.117667 CCAAATAATTCCAAAACACTTAGGCAC 59.882 37.037 0.00 0.00 0.00 5.01
231 234 3.915437 ATTCCAAAACACTTAGGCACG 57.085 42.857 0.00 0.00 0.00 5.34
232 235 1.600023 TCCAAAACACTTAGGCACGG 58.400 50.000 0.00 0.00 0.00 4.94
233 236 1.134037 TCCAAAACACTTAGGCACGGT 60.134 47.619 0.00 0.00 0.00 4.83
234 237 2.104451 TCCAAAACACTTAGGCACGGTA 59.896 45.455 0.00 0.00 0.00 4.02
235 238 2.224784 CCAAAACACTTAGGCACGGTAC 59.775 50.000 0.00 0.00 0.00 3.34
236 239 2.873472 CAAAACACTTAGGCACGGTACA 59.127 45.455 0.00 0.00 0.00 2.90
237 240 3.412237 AAACACTTAGGCACGGTACAT 57.588 42.857 0.00 0.00 0.00 2.29
238 241 3.412237 AACACTTAGGCACGGTACATT 57.588 42.857 0.00 0.00 0.00 2.71
239 242 4.540359 AACACTTAGGCACGGTACATTA 57.460 40.909 0.00 0.00 0.00 1.90
240 243 4.540359 ACACTTAGGCACGGTACATTAA 57.460 40.909 0.00 0.00 0.00 1.40
241 244 4.248058 ACACTTAGGCACGGTACATTAAC 58.752 43.478 0.00 0.00 0.00 2.01
242 245 4.020839 ACACTTAGGCACGGTACATTAACT 60.021 41.667 0.00 0.00 0.00 2.24
243 246 4.565564 CACTTAGGCACGGTACATTAACTC 59.434 45.833 0.00 0.00 0.00 3.01
244 247 4.465305 ACTTAGGCACGGTACATTAACTCT 59.535 41.667 0.00 0.00 0.00 3.24
245 248 3.975168 AGGCACGGTACATTAACTCTT 57.025 42.857 0.00 0.00 0.00 2.85
246 249 4.281898 AGGCACGGTACATTAACTCTTT 57.718 40.909 0.00 0.00 0.00 2.52
247 250 4.251268 AGGCACGGTACATTAACTCTTTC 58.749 43.478 0.00 0.00 0.00 2.62
248 251 3.373130 GGCACGGTACATTAACTCTTTCC 59.627 47.826 0.00 0.00 0.00 3.13
249 252 4.251268 GCACGGTACATTAACTCTTTCCT 58.749 43.478 0.00 0.00 0.00 3.36
250 253 4.329256 GCACGGTACATTAACTCTTTCCTC 59.671 45.833 0.00 0.00 0.00 3.71
251 254 4.561606 CACGGTACATTAACTCTTTCCTCG 59.438 45.833 0.00 0.00 0.00 4.63
252 255 4.219288 ACGGTACATTAACTCTTTCCTCGT 59.781 41.667 0.00 0.00 0.00 4.18
253 256 5.166398 CGGTACATTAACTCTTTCCTCGTT 58.834 41.667 0.00 0.00 0.00 3.85
254 257 5.636543 CGGTACATTAACTCTTTCCTCGTTT 59.363 40.000 0.00 0.00 0.00 3.60
255 258 6.183360 CGGTACATTAACTCTTTCCTCGTTTC 60.183 42.308 0.00 0.00 0.00 2.78
256 259 6.872547 GGTACATTAACTCTTTCCTCGTTTCT 59.127 38.462 0.00 0.00 0.00 2.52
257 260 7.387122 GGTACATTAACTCTTTCCTCGTTTCTT 59.613 37.037 0.00 0.00 0.00 2.52
258 261 7.190920 ACATTAACTCTTTCCTCGTTTCTTG 57.809 36.000 0.00 0.00 0.00 3.02
259 262 6.766467 ACATTAACTCTTTCCTCGTTTCTTGT 59.234 34.615 0.00 0.00 0.00 3.16
260 263 7.282450 ACATTAACTCTTTCCTCGTTTCTTGTT 59.718 33.333 0.00 0.00 0.00 2.83
261 264 7.619964 TTAACTCTTTCCTCGTTTCTTGTTT 57.380 32.000 0.00 0.00 0.00 2.83
262 265 6.510879 AACTCTTTCCTCGTTTCTTGTTTT 57.489 33.333 0.00 0.00 0.00 2.43
263 266 5.880341 ACTCTTTCCTCGTTTCTTGTTTTG 58.120 37.500 0.00 0.00 0.00 2.44
264 267 5.414765 ACTCTTTCCTCGTTTCTTGTTTTGT 59.585 36.000 0.00 0.00 0.00 2.83
265 268 5.636837 TCTTTCCTCGTTTCTTGTTTTGTG 58.363 37.500 0.00 0.00 0.00 3.33
266 269 5.413213 TCTTTCCTCGTTTCTTGTTTTGTGA 59.587 36.000 0.00 0.00 0.00 3.58
267 270 4.609691 TCCTCGTTTCTTGTTTTGTGAC 57.390 40.909 0.00 0.00 0.00 3.67
268 271 4.004314 TCCTCGTTTCTTGTTTTGTGACA 58.996 39.130 0.00 0.00 0.00 3.58
269 272 4.638421 TCCTCGTTTCTTGTTTTGTGACAT 59.362 37.500 0.00 0.00 0.00 3.06
270 273 5.818336 TCCTCGTTTCTTGTTTTGTGACATA 59.182 36.000 0.00 0.00 0.00 2.29
271 274 6.485313 TCCTCGTTTCTTGTTTTGTGACATAT 59.515 34.615 0.00 0.00 0.00 1.78
272 275 6.797033 CCTCGTTTCTTGTTTTGTGACATATC 59.203 38.462 0.00 0.00 0.00 1.63
273 276 7.252965 TCGTTTCTTGTTTTGTGACATATCA 57.747 32.000 0.00 0.00 0.00 2.15
274 277 7.698628 TCGTTTCTTGTTTTGTGACATATCAA 58.301 30.769 0.00 0.00 36.31 2.57
275 278 7.642194 TCGTTTCTTGTTTTGTGACATATCAAC 59.358 33.333 0.00 0.00 36.31 3.18
276 279 7.096640 CGTTTCTTGTTTTGTGACATATCAACC 60.097 37.037 0.00 0.00 36.31 3.77
277 280 6.951062 TCTTGTTTTGTGACATATCAACCA 57.049 33.333 0.00 0.00 36.31 3.67
278 281 7.340122 TCTTGTTTTGTGACATATCAACCAA 57.660 32.000 0.00 0.00 36.31 3.67
279 282 7.950512 TCTTGTTTTGTGACATATCAACCAAT 58.049 30.769 0.00 0.00 36.31 3.16
280 283 9.072375 TCTTGTTTTGTGACATATCAACCAATA 57.928 29.630 0.00 0.00 36.31 1.90
281 284 9.689976 CTTGTTTTGTGACATATCAACCAATAA 57.310 29.630 0.00 0.00 36.31 1.40
282 285 9.689976 TTGTTTTGTGACATATCAACCAATAAG 57.310 29.630 0.00 0.00 36.31 1.73
283 286 9.072375 TGTTTTGTGACATATCAACCAATAAGA 57.928 29.630 0.00 0.00 36.31 2.10
284 287 9.559958 GTTTTGTGACATATCAACCAATAAGAG 57.440 33.333 0.00 0.00 36.31 2.85
285 288 9.513906 TTTTGTGACATATCAACCAATAAGAGA 57.486 29.630 0.00 0.00 36.31 3.10
286 289 9.685276 TTTGTGACATATCAACCAATAAGAGAT 57.315 29.630 0.00 0.00 36.31 2.75
287 290 8.667076 TGTGACATATCAACCAATAAGAGATG 57.333 34.615 0.00 0.00 36.31 2.90
288 291 8.267183 TGTGACATATCAACCAATAAGAGATGT 58.733 33.333 0.00 0.00 44.20 3.06
289 292 8.554528 GTGACATATCAACCAATAAGAGATGTG 58.445 37.037 6.64 0.00 42.33 3.21
290 293 7.716560 TGACATATCAACCAATAAGAGATGTGG 59.283 37.037 6.64 0.00 42.33 4.17
291 294 7.000472 ACATATCAACCAATAAGAGATGTGGG 59.000 38.462 0.00 0.00 41.18 4.61
292 295 3.620488 TCAACCAATAAGAGATGTGGGC 58.380 45.455 0.00 0.00 35.32 5.36
293 296 2.689983 CAACCAATAAGAGATGTGGGCC 59.310 50.000 0.00 0.00 35.32 5.80
294 297 1.922447 ACCAATAAGAGATGTGGGCCA 59.078 47.619 0.00 0.00 35.32 5.36
295 298 2.515429 ACCAATAAGAGATGTGGGCCAT 59.485 45.455 10.70 0.00 35.32 4.40
296 299 2.889045 CCAATAAGAGATGTGGGCCATG 59.111 50.000 10.70 0.00 32.56 3.66
297 300 2.283145 ATAAGAGATGTGGGCCATGC 57.717 50.000 10.70 1.77 32.56 4.06
298 301 0.918258 TAAGAGATGTGGGCCATGCA 59.082 50.000 10.70 3.89 32.56 3.96
299 302 0.260816 AAGAGATGTGGGCCATGCAT 59.739 50.000 10.70 9.82 32.56 3.96
300 303 0.467474 AGAGATGTGGGCCATGCATG 60.467 55.000 20.19 20.19 32.56 4.06
301 304 2.083835 GAGATGTGGGCCATGCATGC 62.084 60.000 21.69 11.82 32.56 4.06
302 305 2.042333 ATGTGGGCCATGCATGCT 60.042 55.556 21.69 1.07 30.69 3.79
303 306 1.682451 GATGTGGGCCATGCATGCTT 61.682 55.000 21.69 10.16 32.56 3.91
304 307 1.682451 ATGTGGGCCATGCATGCTTC 61.682 55.000 21.69 11.62 30.69 3.86
305 308 2.760799 TGGGCCATGCATGCTTCC 60.761 61.111 21.69 19.68 0.00 3.46
306 309 2.760799 GGGCCATGCATGCTTCCA 60.761 61.111 21.69 0.00 0.00 3.53
307 310 2.360767 GGGCCATGCATGCTTCCAA 61.361 57.895 21.69 0.00 0.00 3.53
308 311 1.692173 GGGCCATGCATGCTTCCAAT 61.692 55.000 21.69 0.00 0.00 3.16
309 312 0.531974 GGCCATGCATGCTTCCAATG 60.532 55.000 21.69 13.22 0.00 2.82
310 313 0.462375 GCCATGCATGCTTCCAATGA 59.538 50.000 21.69 0.00 0.00 2.57
311 314 1.805120 GCCATGCATGCTTCCAATGAC 60.805 52.381 21.69 2.22 0.00 3.06
312 315 1.754803 CCATGCATGCTTCCAATGACT 59.245 47.619 21.69 0.00 0.00 3.41
313 316 2.167693 CCATGCATGCTTCCAATGACTT 59.832 45.455 21.69 0.00 0.00 3.01
314 317 3.186909 CATGCATGCTTCCAATGACTTG 58.813 45.455 20.33 0.00 0.00 3.16
315 318 2.516906 TGCATGCTTCCAATGACTTGA 58.483 42.857 20.33 0.00 34.04 3.02
316 319 2.490509 TGCATGCTTCCAATGACTTGAG 59.509 45.455 20.33 0.00 34.04 3.02
317 320 2.751259 GCATGCTTCCAATGACTTGAGA 59.249 45.455 11.37 0.00 34.04 3.27
318 321 3.427233 GCATGCTTCCAATGACTTGAGAC 60.427 47.826 11.37 0.00 34.04 3.36
319 322 3.777106 TGCTTCCAATGACTTGAGACT 57.223 42.857 0.00 0.00 34.04 3.24
320 323 4.890158 TGCTTCCAATGACTTGAGACTA 57.110 40.909 0.00 0.00 34.04 2.59
321 324 5.426689 TGCTTCCAATGACTTGAGACTAT 57.573 39.130 0.00 0.00 34.04 2.12
322 325 5.423015 TGCTTCCAATGACTTGAGACTATC 58.577 41.667 0.00 0.00 34.04 2.08
323 326 5.046376 TGCTTCCAATGACTTGAGACTATCA 60.046 40.000 0.00 0.00 34.04 2.15
324 327 5.877012 GCTTCCAATGACTTGAGACTATCAA 59.123 40.000 0.00 0.00 45.79 2.57
335 338 6.426980 TTGAGACTATCAAACATGACATGC 57.573 37.500 15.49 0.00 45.00 4.06
336 339 5.490159 TGAGACTATCAAACATGACATGCA 58.510 37.500 15.49 0.00 34.02 3.96
337 340 5.583457 TGAGACTATCAAACATGACATGCAG 59.417 40.000 15.49 5.76 34.02 4.41
338 341 5.494724 AGACTATCAAACATGACATGCAGT 58.505 37.500 15.49 8.76 0.00 4.40
339 342 5.353400 AGACTATCAAACATGACATGCAGTG 59.647 40.000 15.49 10.63 0.00 3.66
340 343 3.861276 ATCAAACATGACATGCAGTGG 57.139 42.857 15.49 0.00 0.00 4.00
341 344 2.585330 TCAAACATGACATGCAGTGGT 58.415 42.857 15.49 0.00 0.00 4.16
342 345 2.957680 TCAAACATGACATGCAGTGGTT 59.042 40.909 15.49 0.00 0.00 3.67
343 346 4.140536 TCAAACATGACATGCAGTGGTTA 58.859 39.130 15.49 0.00 0.00 2.85
344 347 4.216042 TCAAACATGACATGCAGTGGTTAG 59.784 41.667 15.49 0.00 0.00 2.34
345 348 3.423539 ACATGACATGCAGTGGTTAGT 57.576 42.857 15.49 0.00 0.00 2.24
346 349 3.076621 ACATGACATGCAGTGGTTAGTG 58.923 45.455 15.49 0.00 0.00 2.74
355 358 2.871133 CAGTGGTTAGTGCATTGCATG 58.129 47.619 15.49 2.36 41.91 4.06
394 397 7.914537 AGCAAAAAGACATTAAGTTTTCTCG 57.085 32.000 0.00 0.00 0.00 4.04
395 398 7.480810 AGCAAAAAGACATTAAGTTTTCTCGT 58.519 30.769 0.00 0.00 0.00 4.18
396 399 7.973944 AGCAAAAAGACATTAAGTTTTCTCGTT 59.026 29.630 0.00 0.00 0.00 3.85
397 400 8.592155 GCAAAAAGACATTAAGTTTTCTCGTTT 58.408 29.630 0.00 0.00 0.00 3.60
400 403 8.851960 AAAGACATTAAGTTTTCTCGTTTTCC 57.148 30.769 0.00 0.00 0.00 3.13
401 404 7.803279 AGACATTAAGTTTTCTCGTTTTCCT 57.197 32.000 0.00 0.00 0.00 3.36
402 405 7.862648 AGACATTAAGTTTTCTCGTTTTCCTC 58.137 34.615 0.00 0.00 0.00 3.71
403 406 7.715686 AGACATTAAGTTTTCTCGTTTTCCTCT 59.284 33.333 0.00 0.00 0.00 3.69
404 407 7.862648 ACATTAAGTTTTCTCGTTTTCCTCTC 58.137 34.615 0.00 0.00 0.00 3.20
405 408 6.856135 TTAAGTTTTCTCGTTTTCCTCTCC 57.144 37.500 0.00 0.00 0.00 3.71
406 409 3.391049 AGTTTTCTCGTTTTCCTCTCCG 58.609 45.455 0.00 0.00 0.00 4.63
407 410 1.792006 TTTCTCGTTTTCCTCTCCGC 58.208 50.000 0.00 0.00 0.00 5.54
408 411 0.037605 TTCTCGTTTTCCTCTCCGCC 60.038 55.000 0.00 0.00 0.00 6.13
409 412 0.898789 TCTCGTTTTCCTCTCCGCCT 60.899 55.000 0.00 0.00 0.00 5.52
410 413 0.037232 CTCGTTTTCCTCTCCGCCTT 60.037 55.000 0.00 0.00 0.00 4.35
411 414 0.320421 TCGTTTTCCTCTCCGCCTTG 60.320 55.000 0.00 0.00 0.00 3.61
412 415 1.298859 CGTTTTCCTCTCCGCCTTGG 61.299 60.000 0.00 0.00 40.09 3.61
413 416 0.250770 GTTTTCCTCTCCGCCTTGGT 60.251 55.000 0.00 0.00 39.52 3.67
414 417 0.036306 TTTTCCTCTCCGCCTTGGTC 59.964 55.000 0.00 0.00 39.52 4.02
415 418 2.167398 TTTCCTCTCCGCCTTGGTCG 62.167 60.000 0.00 0.00 39.52 4.79
416 419 4.821589 CCTCTCCGCCTTGGTCGC 62.822 72.222 0.00 0.00 39.52 5.19
425 428 3.276091 CTTGGTCGCGGTGCACAA 61.276 61.111 20.43 1.00 0.00 3.33
426 429 3.521308 CTTGGTCGCGGTGCACAAC 62.521 63.158 20.43 8.80 0.00 3.32
429 432 3.031457 GTCGCGGTGCACAACGTA 61.031 61.111 24.25 12.47 44.66 3.57
430 433 2.279318 TCGCGGTGCACAACGTAA 60.279 55.556 24.25 8.80 44.66 3.18
431 434 2.170036 CGCGGTGCACAACGTAAG 59.830 61.111 20.43 6.32 44.66 2.34
432 435 2.304401 CGCGGTGCACAACGTAAGA 61.304 57.895 20.43 0.00 44.66 2.10
433 436 1.623081 CGCGGTGCACAACGTAAGAT 61.623 55.000 20.43 0.00 44.66 2.40
434 437 0.179225 GCGGTGCACAACGTAAGATG 60.179 55.000 20.43 0.00 44.66 2.90
435 438 1.424403 CGGTGCACAACGTAAGATGA 58.576 50.000 20.43 0.00 43.67 2.92
436 439 1.126113 CGGTGCACAACGTAAGATGAC 59.874 52.381 20.43 0.00 43.67 3.06
437 440 2.413837 GGTGCACAACGTAAGATGACT 58.586 47.619 20.43 0.00 43.67 3.41
438 441 2.806244 GGTGCACAACGTAAGATGACTT 59.194 45.455 20.43 0.00 43.67 3.01
439 442 3.991773 GGTGCACAACGTAAGATGACTTA 59.008 43.478 20.43 0.00 43.67 2.24
451 454 4.966965 AGATGACTTACACACCTAGACG 57.033 45.455 0.00 0.00 0.00 4.18
452 455 3.695060 AGATGACTTACACACCTAGACGG 59.305 47.826 0.00 0.00 39.35 4.79
453 456 3.144657 TGACTTACACACCTAGACGGA 57.855 47.619 0.00 0.00 36.31 4.69
454 457 3.079578 TGACTTACACACCTAGACGGAG 58.920 50.000 0.00 0.00 36.31 4.63
455 458 2.422832 GACTTACACACCTAGACGGAGG 59.577 54.545 0.00 0.00 42.89 4.30
456 459 1.749634 CTTACACACCTAGACGGAGGG 59.250 57.143 5.42 0.00 41.36 4.30
457 460 0.994247 TACACACCTAGACGGAGGGA 59.006 55.000 5.42 0.00 41.36 4.20
458 461 0.323542 ACACACCTAGACGGAGGGAG 60.324 60.000 5.42 0.78 41.36 4.30
459 462 0.323542 CACACCTAGACGGAGGGAGT 60.324 60.000 5.42 1.31 41.36 3.85
460 463 1.064906 CACACCTAGACGGAGGGAGTA 60.065 57.143 5.42 0.00 41.36 2.59
461 464 1.064832 ACACCTAGACGGAGGGAGTAC 60.065 57.143 5.42 0.00 41.36 2.73
462 465 1.212441 CACCTAGACGGAGGGAGTACT 59.788 57.143 0.00 0.00 41.36 2.73
463 466 2.437281 CACCTAGACGGAGGGAGTACTA 59.563 54.545 0.00 0.00 41.36 1.82
497 500 8.718734 ACGTCATAAATAACCTCTCTGTTTTTC 58.281 33.333 0.00 0.00 0.00 2.29
498 501 8.936864 CGTCATAAATAACCTCTCTGTTTTTCT 58.063 33.333 0.00 0.00 0.00 2.52
506 518 5.652324 ACCTCTCTGTTTTTCTAGGACCTA 58.348 41.667 0.13 0.13 0.00 3.08
608 1206 3.320541 CCCACCAACATAGCACAAGAAAA 59.679 43.478 0.00 0.00 0.00 2.29
672 1270 9.965824 ATTCAAATGTTTATTTCTTCGTGTCTT 57.034 25.926 0.00 0.00 34.34 3.01
711 1310 5.361285 ACAACCTTGCTGTTACAAACCATAA 59.639 36.000 0.00 0.00 0.00 1.90
714 1313 4.218417 CCTTGCTGTTACAAACCATAAGCT 59.782 41.667 0.00 0.00 30.56 3.74
729 1328 6.386654 ACCATAAGCTAACATTTGGTTTTCG 58.613 36.000 0.00 0.00 40.96 3.46
735 1334 3.726291 AACATTTGGTTTTCGGTCAGG 57.274 42.857 0.00 0.00 35.82 3.86
740 1339 4.803098 TTTGGTTTTCGGTCAGGAAAAA 57.197 36.364 2.40 0.00 44.76 1.94
744 1343 4.278919 TGGTTTTCGGTCAGGAAAAATACC 59.721 41.667 2.40 2.24 44.76 2.73
770 1373 2.515398 CATGCCGCCCTCCCATAA 59.485 61.111 0.00 0.00 0.00 1.90
773 1376 0.188342 ATGCCGCCCTCCCATAAAAT 59.812 50.000 0.00 0.00 0.00 1.82
778 1381 4.264172 TGCCGCCCTCCCATAAAATATAAT 60.264 41.667 0.00 0.00 0.00 1.28
779 1382 4.709886 GCCGCCCTCCCATAAAATATAATT 59.290 41.667 0.00 0.00 0.00 1.40
849 1452 7.208080 GCATAAAGGAAATGAAGCATCTGATT 58.792 34.615 0.00 0.00 0.00 2.57
860 1463 5.066893 TGAAGCATCTGATTTGTATTCTGGC 59.933 40.000 0.00 0.00 0.00 4.85
888 1491 6.378582 TGTTCTGAGAAAACACAAACAACTC 58.621 36.000 0.00 0.00 31.90 3.01
892 1495 5.890334 TGAGAAAACACAAACAACTCCATC 58.110 37.500 0.00 0.00 0.00 3.51
896 1499 4.552166 AACACAAACAACTCCATCGAAG 57.448 40.909 0.00 0.00 0.00 3.79
1005 1625 4.640201 TGGCAGCTTAATTTCACTATGTCC 59.360 41.667 0.00 0.00 0.00 4.02
1012 1632 4.900635 AATTTCACTATGTCCGGAATGC 57.099 40.909 5.23 0.00 0.00 3.56
1033 1653 2.290916 CCATCTGATGATGCAAGTGCTC 59.709 50.000 18.92 0.89 46.43 4.26
1036 1656 3.414269 TCTGATGATGCAAGTGCTCAAA 58.586 40.909 4.69 0.00 42.66 2.69
1062 1682 2.227626 GCTTGAAGGAGAAGTTTCTGGC 59.772 50.000 0.00 0.00 37.73 4.85
1077 1697 3.314541 TCTGGCGAAAAGGTAGAAGAC 57.685 47.619 0.00 0.00 0.00 3.01
1087 1707 6.090088 CGAAAAGGTAGAAGACACTCAAGATG 59.910 42.308 0.00 0.00 0.00 2.90
1141 1761 1.203275 AGGAGGTACCGTCTTTTCCCT 60.203 52.381 6.18 1.77 44.74 4.20
1191 1814 7.094634 GCCTCTTGGGTGTATATTATTCATGTG 60.095 40.741 0.00 0.00 37.43 3.21
1206 1829 9.643693 ATTATTCATGTGATCTTTGTTCCAAAC 57.356 29.630 0.00 0.00 0.00 2.93
1207 1830 6.713762 TTCATGTGATCTTTGTTCCAAACT 57.286 33.333 0.00 0.00 0.00 2.66
1208 1831 6.713762 TCATGTGATCTTTGTTCCAAACTT 57.286 33.333 0.00 0.00 0.00 2.66
1209 1832 6.506147 TCATGTGATCTTTGTTCCAAACTTG 58.494 36.000 0.00 0.00 0.00 3.16
1210 1833 5.913137 TGTGATCTTTGTTCCAAACTTGT 57.087 34.783 0.00 0.00 0.00 3.16
1211 1834 7.284261 TCATGTGATCTTTGTTCCAAACTTGTA 59.716 33.333 0.00 0.00 0.00 2.41
1212 1835 7.581213 TGTGATCTTTGTTCCAAACTTGTAT 57.419 32.000 0.00 0.00 0.00 2.29
1213 1836 7.424803 TGTGATCTTTGTTCCAAACTTGTATG 58.575 34.615 0.00 0.00 0.00 2.39
1214 1837 6.863126 GTGATCTTTGTTCCAAACTTGTATGG 59.137 38.462 0.00 0.00 38.09 2.74
1215 1838 5.195001 TCTTTGTTCCAAACTTGTATGGC 57.805 39.130 0.00 0.00 36.62 4.40
1216 1839 4.646945 TCTTTGTTCCAAACTTGTATGGCA 59.353 37.500 0.00 0.00 36.62 4.92
1217 1840 4.314740 TTGTTCCAAACTTGTATGGCAC 57.685 40.909 0.00 0.00 36.62 5.01
1218 1841 2.292016 TGTTCCAAACTTGTATGGCACG 59.708 45.455 0.00 0.00 35.88 5.34
1219 1842 2.264005 TCCAAACTTGTATGGCACGT 57.736 45.000 0.00 0.00 36.62 4.49
1220 1843 1.876799 TCCAAACTTGTATGGCACGTG 59.123 47.619 12.28 12.28 36.62 4.49
1221 1844 1.606668 CCAAACTTGTATGGCACGTGT 59.393 47.619 18.38 0.00 29.51 4.49
1222 1845 2.034053 CCAAACTTGTATGGCACGTGTT 59.966 45.455 18.38 5.24 29.51 3.32
1223 1846 3.251245 CCAAACTTGTATGGCACGTGTTA 59.749 43.478 18.38 6.89 29.51 2.41
1224 1847 4.261238 CCAAACTTGTATGGCACGTGTTAA 60.261 41.667 18.38 3.29 29.51 2.01
1225 1848 5.457140 CAAACTTGTATGGCACGTGTTAAT 58.543 37.500 18.38 10.78 29.51 1.40
1226 1849 5.699097 AACTTGTATGGCACGTGTTAATT 57.301 34.783 18.38 0.82 29.51 1.40
1227 1850 6.804770 AACTTGTATGGCACGTGTTAATTA 57.195 33.333 18.38 0.00 29.51 1.40
1228 1851 6.417191 ACTTGTATGGCACGTGTTAATTAG 57.583 37.500 18.38 9.32 0.00 1.73
1229 1852 4.868450 TGTATGGCACGTGTTAATTAGC 57.132 40.909 18.38 0.00 0.00 3.09
1230 1853 4.509616 TGTATGGCACGTGTTAATTAGCT 58.490 39.130 18.38 0.00 0.00 3.32
1231 1854 4.569162 TGTATGGCACGTGTTAATTAGCTC 59.431 41.667 18.38 0.00 0.00 4.09
1232 1855 3.328382 TGGCACGTGTTAATTAGCTCT 57.672 42.857 18.38 0.00 0.00 4.09
1233 1856 3.000041 TGGCACGTGTTAATTAGCTCTG 59.000 45.455 18.38 0.41 0.00 3.35
1234 1857 3.000727 GGCACGTGTTAATTAGCTCTGT 58.999 45.455 18.38 0.00 0.00 3.41
1251 1874 2.165641 TCTGTGCTTGTATGGGTACTCG 59.834 50.000 0.00 0.00 0.00 4.18
1335 1958 1.523758 AGGTCAATGCCGTTGTCTTC 58.476 50.000 0.00 0.00 38.95 2.87
1339 1962 3.120304 GGTCAATGCCGTTGTCTTCTAAC 60.120 47.826 0.00 0.00 38.95 2.34
1347 1970 3.424529 CCGTTGTCTTCTAACGTCTTCAC 59.575 47.826 9.06 0.00 46.81 3.18
1366 1990 9.196552 GTCTTCACTTCCCTTCAAATTAAATTG 57.803 33.333 0.00 0.00 0.00 2.32
1369 1993 8.017418 TCACTTCCCTTCAAATTAAATTGTGT 57.983 30.769 3.27 0.00 0.00 3.72
1370 1994 9.137459 TCACTTCCCTTCAAATTAAATTGTGTA 57.863 29.630 3.27 0.00 0.00 2.90
1371 1995 9.757227 CACTTCCCTTCAAATTAAATTGTGTAA 57.243 29.630 3.27 0.00 0.00 2.41
1469 2095 3.790437 CAGGACCATGAGCGGGCT 61.790 66.667 0.00 0.00 32.93 5.19
1580 2206 8.757164 AAAACCTAAATAAGCAATGCAACTAC 57.243 30.769 8.35 0.00 0.00 2.73
1598 2224 7.119992 TGCAACTACAACAGTTTTACTTCTTCA 59.880 33.333 0.00 0.00 45.54 3.02
1678 2304 2.094390 TCGACCAAAACTCCAGGTATCG 60.094 50.000 0.00 0.00 35.36 2.92
1679 2305 2.094390 CGACCAAAACTCCAGGTATCGA 60.094 50.000 0.00 0.00 35.36 3.59
1680 2306 3.430374 CGACCAAAACTCCAGGTATCGAT 60.430 47.826 2.16 2.16 35.36 3.59
1681 2307 4.202080 CGACCAAAACTCCAGGTATCGATA 60.202 45.833 0.00 0.00 35.36 2.92
1682 2308 5.277857 ACCAAAACTCCAGGTATCGATAG 57.722 43.478 5.09 0.00 32.92 2.08
1683 2309 4.715297 ACCAAAACTCCAGGTATCGATAGT 59.285 41.667 5.09 0.00 32.92 2.12
1684 2310 5.189145 ACCAAAACTCCAGGTATCGATAGTT 59.811 40.000 5.09 4.25 32.92 2.24
1685 2311 6.113411 CCAAAACTCCAGGTATCGATAGTTT 58.887 40.000 13.45 13.45 38.45 2.66
1686 2312 6.037172 CCAAAACTCCAGGTATCGATAGTTTG 59.963 42.308 17.88 11.30 37.27 2.93
1700 2326 8.749841 ATCGATAGTTTGATACTAATGCTCAC 57.250 34.615 0.00 0.00 42.45 3.51
1802 2428 8.877808 TGATCTGTGCTCATTATACTGTAAAG 57.122 34.615 0.00 0.00 0.00 1.85
1830 2456 2.144730 GATGTCCTGATCATGCAGCTC 58.855 52.381 0.00 0.00 34.56 4.09
1932 2559 4.508861 GCAATGTTGAAGTCACTTGCAATT 59.491 37.500 0.00 0.00 38.96 2.32
1944 2571 3.605056 CACTTGCAATTCTATGTTGTGCG 59.395 43.478 0.00 0.00 38.05 5.34
1964 2591 3.611986 GCGAAGTTCATCTCTTCACTCAG 59.388 47.826 3.32 0.00 40.63 3.35
1971 2598 8.964476 AGTTCATCTCTTCACTCAGTTAAAAA 57.036 30.769 0.00 0.00 0.00 1.94
2091 2718 2.224042 TGGTACTCCTTATCTGCGCATG 60.224 50.000 12.24 5.41 34.23 4.06
2108 2735 2.012673 CATGCTAAGCAGACAACTCCC 58.987 52.381 0.00 0.00 43.65 4.30
2267 2895 9.825972 GTATAATGTGCATCGTGCTTTTTATAT 57.174 29.630 10.54 5.69 45.31 0.86
2296 2924 1.802508 CGCGGTTCTGCTGTCATGATA 60.803 52.381 0.00 0.00 0.00 2.15
2340 2969 4.581077 AACTAGCACCGGTACTTATAGC 57.419 45.455 13.78 7.76 0.00 2.97
2461 3090 1.076332 GTGTTGTAGTGCCGGATGTC 58.924 55.000 5.05 0.00 0.00 3.06
2469 3098 2.457598 AGTGCCGGATGTCTAAGAAGA 58.542 47.619 5.05 0.00 0.00 2.87
2525 3182 4.142600 ACACTTTCAAGCAACTGTGACTTC 60.143 41.667 0.00 0.00 0.00 3.01
2538 3195 7.201679 GCAACTGTGACTTCTGCTGATTTATAT 60.202 37.037 0.00 0.00 0.00 0.86
2582 3239 2.068519 TCATGTCTAAACTGTGCAGCG 58.931 47.619 0.00 0.00 0.00 5.18
2589 3246 2.063541 AAACTGTGCAGCGCCAAGAC 62.064 55.000 2.29 0.00 0.00 3.01
2611 3269 9.758651 AAGACAAAAATAATGTAGAAACCAACC 57.241 29.630 0.00 0.00 0.00 3.77
2638 3296 6.073112 CCACAAAATGGTAATTGAAAGCCTTG 60.073 38.462 0.00 0.00 44.46 3.61
2647 3305 1.757682 TGAAAGCCTTGACAAACCGT 58.242 45.000 0.00 0.00 0.00 4.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.694177 CGCACATCAAATGCAAGAAAAAG 58.306 39.130 0.00 0.00 43.57 2.27
1 2 3.059733 GCGCACATCAAATGCAAGAAAAA 60.060 39.130 0.30 0.00 43.57 1.94
2 3 2.475864 GCGCACATCAAATGCAAGAAAA 59.524 40.909 0.30 0.00 43.57 2.29
3 4 2.060284 GCGCACATCAAATGCAAGAAA 58.940 42.857 0.30 0.00 43.57 2.52
4 5 1.000496 TGCGCACATCAAATGCAAGAA 60.000 42.857 5.66 0.00 43.57 2.52
5 6 0.597072 TGCGCACATCAAATGCAAGA 59.403 45.000 5.66 0.00 43.57 3.02
6 7 0.989164 CTGCGCACATCAAATGCAAG 59.011 50.000 5.66 0.00 43.57 4.01
7 8 0.314618 ACTGCGCACATCAAATGCAA 59.685 45.000 5.66 0.00 43.57 4.08
8 9 1.135717 GTACTGCGCACATCAAATGCA 60.136 47.619 5.66 0.00 43.57 3.96
9 10 1.131126 AGTACTGCGCACATCAAATGC 59.869 47.619 5.66 0.00 39.81 3.56
10 11 3.618594 ACTAGTACTGCGCACATCAAATG 59.381 43.478 5.66 0.00 0.00 2.32
11 12 3.861840 ACTAGTACTGCGCACATCAAAT 58.138 40.909 5.66 0.00 0.00 2.32
12 13 3.313012 ACTAGTACTGCGCACATCAAA 57.687 42.857 5.66 0.00 0.00 2.69
13 14 3.313012 AACTAGTACTGCGCACATCAA 57.687 42.857 5.66 0.00 0.00 2.57
14 15 4.649088 ATAACTAGTACTGCGCACATCA 57.351 40.909 5.66 0.00 0.00 3.07
15 16 5.041287 TCAATAACTAGTACTGCGCACATC 58.959 41.667 5.66 0.00 0.00 3.06
16 17 5.006153 TCAATAACTAGTACTGCGCACAT 57.994 39.130 5.66 0.00 0.00 3.21
17 18 4.157105 TCTCAATAACTAGTACTGCGCACA 59.843 41.667 5.66 0.00 0.00 4.57
18 19 4.669318 TCTCAATAACTAGTACTGCGCAC 58.331 43.478 5.66 0.00 0.00 5.34
19 20 4.976224 TCTCAATAACTAGTACTGCGCA 57.024 40.909 10.98 10.98 0.00 6.09
20 21 5.520632 TCATCTCAATAACTAGTACTGCGC 58.479 41.667 5.39 0.00 0.00 6.09
21 22 7.358765 GCATTCATCTCAATAACTAGTACTGCG 60.359 40.741 5.39 0.00 0.00 5.18
22 23 7.095439 GGCATTCATCTCAATAACTAGTACTGC 60.095 40.741 5.39 0.00 0.00 4.40
23 24 8.147058 AGGCATTCATCTCAATAACTAGTACTG 58.853 37.037 5.39 0.00 0.00 2.74
24 25 8.256356 AGGCATTCATCTCAATAACTAGTACT 57.744 34.615 0.00 0.00 0.00 2.73
25 26 8.364142 AGAGGCATTCATCTCAATAACTAGTAC 58.636 37.037 0.00 0.00 32.76 2.73
26 27 8.484214 AGAGGCATTCATCTCAATAACTAGTA 57.516 34.615 0.00 0.00 32.76 1.82
27 28 7.372260 AGAGGCATTCATCTCAATAACTAGT 57.628 36.000 0.00 0.00 32.76 2.57
28 29 8.149647 AGAAGAGGCATTCATCTCAATAACTAG 58.850 37.037 5.44 0.00 27.87 2.57
29 30 8.027524 AGAAGAGGCATTCATCTCAATAACTA 57.972 34.615 5.44 0.00 27.87 2.24
30 31 6.897986 AGAAGAGGCATTCATCTCAATAACT 58.102 36.000 5.44 0.00 27.87 2.24
31 32 7.565323 AAGAAGAGGCATTCATCTCAATAAC 57.435 36.000 5.44 0.00 32.91 1.89
43 44 5.044550 ACCAGATTAGGAAAGAAGAGGCATT 60.045 40.000 0.00 0.00 0.00 3.56
74 77 1.912043 AGCTGAACCAGAGCCACTAAT 59.088 47.619 0.00 0.00 37.12 1.73
112 115 5.603680 CTGAACCAGAGCCGGAGGTAATC 62.604 56.522 5.05 3.20 42.04 1.75
113 116 3.802652 CTGAACCAGAGCCGGAGGTAAT 61.803 54.545 5.05 0.00 42.04 1.89
114 117 2.506273 CTGAACCAGAGCCGGAGGTAA 61.506 57.143 5.05 0.00 42.04 2.85
115 118 0.970937 CTGAACCAGAGCCGGAGGTA 60.971 60.000 5.05 0.00 42.04 3.08
116 119 2.286523 CTGAACCAGAGCCGGAGGT 61.287 63.158 5.05 3.66 42.04 3.85
117 120 2.581354 CTGAACCAGAGCCGGAGG 59.419 66.667 5.05 2.89 42.72 4.30
118 121 2.125350 GCTGAACCAGAGCCGGAG 60.125 66.667 5.05 0.00 32.44 4.63
119 122 1.768684 AAAGCTGAACCAGAGCCGGA 61.769 55.000 5.05 0.00 37.12 5.14
120 123 0.036388 TAAAGCTGAACCAGAGCCGG 60.036 55.000 0.00 0.00 37.12 6.13
121 124 1.667724 CATAAAGCTGAACCAGAGCCG 59.332 52.381 0.00 0.00 37.12 5.52
122 125 2.019984 CCATAAAGCTGAACCAGAGCC 58.980 52.381 0.00 0.00 37.12 4.70
123 126 2.680339 GTCCATAAAGCTGAACCAGAGC 59.320 50.000 0.00 0.00 36.65 4.09
124 127 3.054802 AGGTCCATAAAGCTGAACCAGAG 60.055 47.826 0.00 0.00 32.44 3.35
125 128 2.912956 AGGTCCATAAAGCTGAACCAGA 59.087 45.455 0.00 0.00 32.44 3.86
167 170 4.767928 ACTTACACACCTAGACAGAGGAAG 59.232 45.833 0.00 0.00 39.15 3.46
169 172 4.202535 TGACTTACACACCTAGACAGAGGA 60.203 45.833 0.00 0.00 39.15 3.71
170 173 4.079970 TGACTTACACACCTAGACAGAGG 58.920 47.826 0.00 0.00 42.89 3.69
189 192 7.539710 GGAATTATTTGGTTTTCGTAAGGTGAC 59.460 37.037 0.00 0.00 38.47 3.67
190 193 7.230913 TGGAATTATTTGGTTTTCGTAAGGTGA 59.769 33.333 0.00 0.00 38.47 4.02
191 194 7.371936 TGGAATTATTTGGTTTTCGTAAGGTG 58.628 34.615 0.00 0.00 38.47 4.00
192 195 7.527568 TGGAATTATTTGGTTTTCGTAAGGT 57.472 32.000 0.00 0.00 38.47 3.50
193 196 8.819643 TTTGGAATTATTTGGTTTTCGTAAGG 57.180 30.769 0.00 0.00 38.47 2.69
195 198 9.595823 TGTTTTGGAATTATTTGGTTTTCGTAA 57.404 25.926 0.00 0.00 0.00 3.18
196 199 9.032420 GTGTTTTGGAATTATTTGGTTTTCGTA 57.968 29.630 0.00 0.00 0.00 3.43
197 200 7.766738 AGTGTTTTGGAATTATTTGGTTTTCGT 59.233 29.630 0.00 0.00 0.00 3.85
198 201 8.137210 AGTGTTTTGGAATTATTTGGTTTTCG 57.863 30.769 0.00 0.00 0.00 3.46
201 204 9.554395 CCTAAGTGTTTTGGAATTATTTGGTTT 57.446 29.630 0.00 0.00 31.74 3.27
202 205 7.659799 GCCTAAGTGTTTTGGAATTATTTGGTT 59.340 33.333 0.00 0.00 31.74 3.67
203 206 7.158697 GCCTAAGTGTTTTGGAATTATTTGGT 58.841 34.615 0.00 0.00 31.74 3.67
204 207 7.117667 GTGCCTAAGTGTTTTGGAATTATTTGG 59.882 37.037 0.00 0.00 31.74 3.28
205 208 7.148820 CGTGCCTAAGTGTTTTGGAATTATTTG 60.149 37.037 0.00 0.00 31.74 2.32
206 209 6.866248 CGTGCCTAAGTGTTTTGGAATTATTT 59.134 34.615 0.00 0.00 31.74 1.40
207 210 6.386654 CGTGCCTAAGTGTTTTGGAATTATT 58.613 36.000 0.00 0.00 31.74 1.40
208 211 5.105917 CCGTGCCTAAGTGTTTTGGAATTAT 60.106 40.000 0.00 0.00 31.74 1.28
209 212 4.216687 CCGTGCCTAAGTGTTTTGGAATTA 59.783 41.667 0.00 0.00 31.74 1.40
210 213 3.005367 CCGTGCCTAAGTGTTTTGGAATT 59.995 43.478 0.00 0.00 31.74 2.17
211 214 2.556622 CCGTGCCTAAGTGTTTTGGAAT 59.443 45.455 0.00 0.00 31.74 3.01
212 215 1.950909 CCGTGCCTAAGTGTTTTGGAA 59.049 47.619 0.00 0.00 31.74 3.53
213 216 1.134037 ACCGTGCCTAAGTGTTTTGGA 60.134 47.619 0.00 0.00 31.74 3.53
214 217 1.314730 ACCGTGCCTAAGTGTTTTGG 58.685 50.000 0.00 0.00 33.04 3.28
215 218 2.873472 TGTACCGTGCCTAAGTGTTTTG 59.127 45.455 0.00 0.00 0.00 2.44
216 219 3.196939 TGTACCGTGCCTAAGTGTTTT 57.803 42.857 0.00 0.00 0.00 2.43
217 220 2.914695 TGTACCGTGCCTAAGTGTTT 57.085 45.000 0.00 0.00 0.00 2.83
218 221 3.412237 AATGTACCGTGCCTAAGTGTT 57.588 42.857 0.00 0.00 0.00 3.32
219 222 4.020839 AGTTAATGTACCGTGCCTAAGTGT 60.021 41.667 0.00 0.00 0.00 3.55
220 223 4.501071 AGTTAATGTACCGTGCCTAAGTG 58.499 43.478 0.00 0.00 0.00 3.16
221 224 4.465305 AGAGTTAATGTACCGTGCCTAAGT 59.535 41.667 0.00 0.00 0.00 2.24
222 225 5.007385 AGAGTTAATGTACCGTGCCTAAG 57.993 43.478 0.00 0.00 0.00 2.18
223 226 5.410355 AAGAGTTAATGTACCGTGCCTAA 57.590 39.130 0.00 0.00 0.00 2.69
224 227 5.410355 AAAGAGTTAATGTACCGTGCCTA 57.590 39.130 0.00 0.00 0.00 3.93
225 228 3.975168 AAGAGTTAATGTACCGTGCCT 57.025 42.857 0.00 0.00 0.00 4.75
226 229 3.373130 GGAAAGAGTTAATGTACCGTGCC 59.627 47.826 0.00 0.00 0.00 5.01
227 230 4.251268 AGGAAAGAGTTAATGTACCGTGC 58.749 43.478 0.00 0.00 0.00 5.34
228 231 4.561606 CGAGGAAAGAGTTAATGTACCGTG 59.438 45.833 0.00 0.00 0.00 4.94
229 232 4.219288 ACGAGGAAAGAGTTAATGTACCGT 59.781 41.667 0.00 0.00 0.00 4.83
230 233 4.741342 ACGAGGAAAGAGTTAATGTACCG 58.259 43.478 0.00 0.00 0.00 4.02
231 234 6.872547 AGAAACGAGGAAAGAGTTAATGTACC 59.127 38.462 0.00 0.00 0.00 3.34
232 235 7.886405 AGAAACGAGGAAAGAGTTAATGTAC 57.114 36.000 0.00 0.00 0.00 2.90
233 236 7.929785 ACAAGAAACGAGGAAAGAGTTAATGTA 59.070 33.333 0.00 0.00 0.00 2.29
234 237 6.766467 ACAAGAAACGAGGAAAGAGTTAATGT 59.234 34.615 0.00 0.00 0.00 2.71
235 238 7.190920 ACAAGAAACGAGGAAAGAGTTAATG 57.809 36.000 0.00 0.00 0.00 1.90
236 239 7.803279 AACAAGAAACGAGGAAAGAGTTAAT 57.197 32.000 0.00 0.00 0.00 1.40
237 240 7.619964 AAACAAGAAACGAGGAAAGAGTTAA 57.380 32.000 0.00 0.00 0.00 2.01
238 241 7.120138 ACAAAACAAGAAACGAGGAAAGAGTTA 59.880 33.333 0.00 0.00 0.00 2.24
239 242 6.072119 ACAAAACAAGAAACGAGGAAAGAGTT 60.072 34.615 0.00 0.00 0.00 3.01
240 243 5.414765 ACAAAACAAGAAACGAGGAAAGAGT 59.585 36.000 0.00 0.00 0.00 3.24
241 244 5.739161 CACAAAACAAGAAACGAGGAAAGAG 59.261 40.000 0.00 0.00 0.00 2.85
242 245 5.413213 TCACAAAACAAGAAACGAGGAAAGA 59.587 36.000 0.00 0.00 0.00 2.52
243 246 5.511729 GTCACAAAACAAGAAACGAGGAAAG 59.488 40.000 0.00 0.00 0.00 2.62
244 247 5.048643 TGTCACAAAACAAGAAACGAGGAAA 60.049 36.000 0.00 0.00 0.00 3.13
245 248 4.456222 TGTCACAAAACAAGAAACGAGGAA 59.544 37.500 0.00 0.00 0.00 3.36
246 249 4.004314 TGTCACAAAACAAGAAACGAGGA 58.996 39.130 0.00 0.00 0.00 3.71
247 250 4.349663 TGTCACAAAACAAGAAACGAGG 57.650 40.909 0.00 0.00 0.00 4.63
248 251 7.351981 TGATATGTCACAAAACAAGAAACGAG 58.648 34.615 0.00 0.00 31.81 4.18
249 252 7.252965 TGATATGTCACAAAACAAGAAACGA 57.747 32.000 0.00 0.00 31.81 3.85
250 253 7.096640 GGTTGATATGTCACAAAACAAGAAACG 60.097 37.037 0.00 0.00 33.11 3.60
251 254 7.704472 TGGTTGATATGTCACAAAACAAGAAAC 59.296 33.333 0.00 0.00 33.11 2.78
252 255 7.776107 TGGTTGATATGTCACAAAACAAGAAA 58.224 30.769 0.00 0.00 33.11 2.52
253 256 7.340122 TGGTTGATATGTCACAAAACAAGAA 57.660 32.000 0.00 0.00 33.11 2.52
254 257 6.951062 TGGTTGATATGTCACAAAACAAGA 57.049 33.333 0.00 0.00 33.11 3.02
255 258 9.689976 TTATTGGTTGATATGTCACAAAACAAG 57.310 29.630 0.00 0.00 33.11 3.16
256 259 9.689976 CTTATTGGTTGATATGTCACAAAACAA 57.310 29.630 0.00 0.00 33.11 2.83
257 260 9.072375 TCTTATTGGTTGATATGTCACAAAACA 57.928 29.630 0.00 0.00 33.11 2.83
258 261 9.559958 CTCTTATTGGTTGATATGTCACAAAAC 57.440 33.333 0.00 0.00 33.11 2.43
259 262 9.513906 TCTCTTATTGGTTGATATGTCACAAAA 57.486 29.630 0.00 0.00 33.11 2.44
260 263 9.685276 ATCTCTTATTGGTTGATATGTCACAAA 57.315 29.630 0.00 0.00 33.11 2.83
261 264 9.112725 CATCTCTTATTGGTTGATATGTCACAA 57.887 33.333 0.00 0.00 33.11 3.33
262 265 8.267183 ACATCTCTTATTGGTTGATATGTCACA 58.733 33.333 0.00 0.00 33.11 3.58
263 266 8.554528 CACATCTCTTATTGGTTGATATGTCAC 58.445 37.037 0.00 0.00 33.11 3.67
264 267 7.716560 CCACATCTCTTATTGGTTGATATGTCA 59.283 37.037 0.00 0.00 29.24 3.58
265 268 7.173907 CCCACATCTCTTATTGGTTGATATGTC 59.826 40.741 0.00 0.00 29.24 3.06
266 269 7.000472 CCCACATCTCTTATTGGTTGATATGT 59.000 38.462 0.00 0.00 30.96 2.29
267 270 6.072286 GCCCACATCTCTTATTGGTTGATATG 60.072 42.308 0.00 0.00 0.00 1.78
268 271 6.006449 GCCCACATCTCTTATTGGTTGATAT 58.994 40.000 0.00 0.00 0.00 1.63
269 272 5.376625 GCCCACATCTCTTATTGGTTGATA 58.623 41.667 0.00 0.00 0.00 2.15
270 273 4.210331 GCCCACATCTCTTATTGGTTGAT 58.790 43.478 0.00 0.00 0.00 2.57
271 274 3.620488 GCCCACATCTCTTATTGGTTGA 58.380 45.455 0.00 0.00 0.00 3.18
272 275 2.689983 GGCCCACATCTCTTATTGGTTG 59.310 50.000 0.00 0.00 0.00 3.77
273 276 2.311542 TGGCCCACATCTCTTATTGGTT 59.688 45.455 0.00 0.00 0.00 3.67
274 277 1.922447 TGGCCCACATCTCTTATTGGT 59.078 47.619 0.00 0.00 0.00 3.67
275 278 2.734755 TGGCCCACATCTCTTATTGG 57.265 50.000 0.00 0.00 0.00 3.16
276 279 2.295349 GCATGGCCCACATCTCTTATTG 59.705 50.000 0.00 0.00 37.84 1.90
277 280 2.091720 TGCATGGCCCACATCTCTTATT 60.092 45.455 0.00 0.00 37.84 1.40
278 281 1.496001 TGCATGGCCCACATCTCTTAT 59.504 47.619 0.00 0.00 37.84 1.73
279 282 0.918258 TGCATGGCCCACATCTCTTA 59.082 50.000 0.00 0.00 37.84 2.10
280 283 0.260816 ATGCATGGCCCACATCTCTT 59.739 50.000 0.00 0.00 37.84 2.85
281 284 0.467474 CATGCATGGCCCACATCTCT 60.467 55.000 19.40 0.00 37.84 3.10
282 285 2.038690 CATGCATGGCCCACATCTC 58.961 57.895 19.40 0.00 37.84 2.75
283 286 2.131709 GCATGCATGGCCCACATCT 61.132 57.895 27.34 0.00 37.84 2.90
284 287 1.682451 AAGCATGCATGGCCCACATC 61.682 55.000 27.34 8.57 37.84 3.06
285 288 1.682451 GAAGCATGCATGGCCCACAT 61.682 55.000 27.34 3.77 41.57 3.21
286 289 2.284039 AAGCATGCATGGCCCACA 60.284 55.556 27.34 0.00 0.00 4.17
287 290 2.497770 GAAGCATGCATGGCCCAC 59.502 61.111 27.34 10.75 0.00 4.61
288 291 2.760799 GGAAGCATGCATGGCCCA 60.761 61.111 27.34 0.00 0.00 5.36
289 292 1.692173 ATTGGAAGCATGCATGGCCC 61.692 55.000 27.34 16.15 0.00 5.80
290 293 0.531974 CATTGGAAGCATGCATGGCC 60.532 55.000 27.34 15.00 0.00 5.36
291 294 0.462375 TCATTGGAAGCATGCATGGC 59.538 50.000 27.34 18.86 0.00 4.40
292 295 1.754803 AGTCATTGGAAGCATGCATGG 59.245 47.619 27.34 10.03 0.00 3.66
293 296 3.119280 TCAAGTCATTGGAAGCATGCATG 60.119 43.478 22.70 22.70 37.02 4.06
294 297 3.093814 TCAAGTCATTGGAAGCATGCAT 58.906 40.909 21.98 8.13 37.02 3.96
295 298 2.490509 CTCAAGTCATTGGAAGCATGCA 59.509 45.455 21.98 0.00 37.02 3.96
296 299 2.751259 TCTCAAGTCATTGGAAGCATGC 59.249 45.455 10.51 10.51 37.02 4.06
297 300 4.008330 AGTCTCAAGTCATTGGAAGCATG 58.992 43.478 0.00 0.00 37.02 4.06
298 301 4.298103 AGTCTCAAGTCATTGGAAGCAT 57.702 40.909 0.00 0.00 37.02 3.79
299 302 3.777106 AGTCTCAAGTCATTGGAAGCA 57.223 42.857 0.00 0.00 37.02 3.91
300 303 5.423015 TGATAGTCTCAAGTCATTGGAAGC 58.577 41.667 0.00 0.00 37.02 3.86
301 304 7.388776 TGTTTGATAGTCTCAAGTCATTGGAAG 59.611 37.037 0.00 0.00 44.48 3.46
302 305 7.223584 TGTTTGATAGTCTCAAGTCATTGGAA 58.776 34.615 0.00 0.00 44.48 3.53
303 306 6.768483 TGTTTGATAGTCTCAAGTCATTGGA 58.232 36.000 0.00 0.00 44.48 3.53
304 307 7.335171 TCATGTTTGATAGTCTCAAGTCATTGG 59.665 37.037 0.00 1.97 44.48 3.16
305 308 8.173775 GTCATGTTTGATAGTCTCAAGTCATTG 58.826 37.037 0.00 0.00 44.48 2.82
306 309 7.879677 TGTCATGTTTGATAGTCTCAAGTCATT 59.120 33.333 0.00 0.00 44.48 2.57
307 310 7.389232 TGTCATGTTTGATAGTCTCAAGTCAT 58.611 34.615 0.00 5.71 44.48 3.06
308 311 6.758254 TGTCATGTTTGATAGTCTCAAGTCA 58.242 36.000 0.00 0.00 44.48 3.41
309 312 7.675870 GCATGTCATGTTTGATAGTCTCAAGTC 60.676 40.741 14.26 0.00 44.48 3.01
310 313 6.093219 GCATGTCATGTTTGATAGTCTCAAGT 59.907 38.462 14.26 0.00 44.48 3.16
311 314 6.093082 TGCATGTCATGTTTGATAGTCTCAAG 59.907 38.462 14.26 0.00 44.48 3.02
312 315 5.939296 TGCATGTCATGTTTGATAGTCTCAA 59.061 36.000 14.26 0.00 42.15 3.02
313 316 5.490159 TGCATGTCATGTTTGATAGTCTCA 58.510 37.500 14.26 0.00 33.56 3.27
314 317 5.583854 ACTGCATGTCATGTTTGATAGTCTC 59.416 40.000 14.26 0.00 33.56 3.36
315 318 5.353400 CACTGCATGTCATGTTTGATAGTCT 59.647 40.000 14.26 0.00 33.56 3.24
316 319 5.448225 CCACTGCATGTCATGTTTGATAGTC 60.448 44.000 14.26 0.00 33.56 2.59
317 320 4.397103 CCACTGCATGTCATGTTTGATAGT 59.603 41.667 14.26 6.85 33.56 2.12
318 321 4.397103 ACCACTGCATGTCATGTTTGATAG 59.603 41.667 14.26 6.33 33.56 2.08
319 322 4.334552 ACCACTGCATGTCATGTTTGATA 58.665 39.130 14.26 0.00 33.56 2.15
320 323 3.159472 ACCACTGCATGTCATGTTTGAT 58.841 40.909 14.26 0.00 33.56 2.57
321 324 2.585330 ACCACTGCATGTCATGTTTGA 58.415 42.857 14.26 0.00 0.00 2.69
322 325 3.374220 AACCACTGCATGTCATGTTTG 57.626 42.857 14.26 8.62 0.00 2.93
323 326 4.022935 CACTAACCACTGCATGTCATGTTT 60.023 41.667 14.26 0.00 0.00 2.83
324 327 3.503363 CACTAACCACTGCATGTCATGTT 59.497 43.478 14.26 2.48 0.00 2.71
325 328 3.076621 CACTAACCACTGCATGTCATGT 58.923 45.455 14.26 0.00 0.00 3.21
326 329 2.159476 GCACTAACCACTGCATGTCATG 60.159 50.000 8.56 8.56 33.31 3.07
327 330 2.086869 GCACTAACCACTGCATGTCAT 58.913 47.619 0.00 0.00 33.31 3.06
328 331 1.202746 TGCACTAACCACTGCATGTCA 60.203 47.619 0.00 0.00 38.49 3.58
329 332 1.522668 TGCACTAACCACTGCATGTC 58.477 50.000 0.00 0.00 38.49 3.06
330 333 3.723772 TGCACTAACCACTGCATGT 57.276 47.368 0.00 0.00 38.49 3.21
334 337 0.597568 TGCAATGCACTAACCACTGC 59.402 50.000 2.72 0.00 31.71 4.40
335 338 2.871133 CATGCAATGCACTAACCACTG 58.129 47.619 11.23 0.00 43.04 3.66
368 371 9.445786 CGAGAAAACTTAATGTCTTTTTGCTAA 57.554 29.630 0.00 0.00 0.00 3.09
369 372 8.617809 ACGAGAAAACTTAATGTCTTTTTGCTA 58.382 29.630 0.00 0.00 0.00 3.49
370 373 7.480810 ACGAGAAAACTTAATGTCTTTTTGCT 58.519 30.769 0.00 0.00 0.00 3.91
371 374 7.679659 ACGAGAAAACTTAATGTCTTTTTGC 57.320 32.000 0.00 0.00 0.00 3.68
374 377 9.297586 GGAAAACGAGAAAACTTAATGTCTTTT 57.702 29.630 0.00 0.00 0.00 2.27
375 378 8.683615 AGGAAAACGAGAAAACTTAATGTCTTT 58.316 29.630 0.00 0.00 0.00 2.52
376 379 8.221965 AGGAAAACGAGAAAACTTAATGTCTT 57.778 30.769 0.00 0.00 0.00 3.01
377 380 7.715686 AGAGGAAAACGAGAAAACTTAATGTCT 59.284 33.333 0.00 0.00 0.00 3.41
378 381 7.862648 AGAGGAAAACGAGAAAACTTAATGTC 58.137 34.615 0.00 0.00 0.00 3.06
379 382 7.041303 GGAGAGGAAAACGAGAAAACTTAATGT 60.041 37.037 0.00 0.00 0.00 2.71
380 383 7.298854 GGAGAGGAAAACGAGAAAACTTAATG 58.701 38.462 0.00 0.00 0.00 1.90
381 384 6.147328 CGGAGAGGAAAACGAGAAAACTTAAT 59.853 38.462 0.00 0.00 0.00 1.40
382 385 5.464389 CGGAGAGGAAAACGAGAAAACTTAA 59.536 40.000 0.00 0.00 0.00 1.85
383 386 4.986659 CGGAGAGGAAAACGAGAAAACTTA 59.013 41.667 0.00 0.00 0.00 2.24
384 387 3.808174 CGGAGAGGAAAACGAGAAAACTT 59.192 43.478 0.00 0.00 0.00 2.66
385 388 3.391049 CGGAGAGGAAAACGAGAAAACT 58.609 45.455 0.00 0.00 0.00 2.66
386 389 2.096367 GCGGAGAGGAAAACGAGAAAAC 60.096 50.000 0.00 0.00 0.00 2.43
387 390 2.140717 GCGGAGAGGAAAACGAGAAAA 58.859 47.619 0.00 0.00 0.00 2.29
388 391 1.607251 GGCGGAGAGGAAAACGAGAAA 60.607 52.381 0.00 0.00 0.00 2.52
389 392 0.037605 GGCGGAGAGGAAAACGAGAA 60.038 55.000 0.00 0.00 0.00 2.87
390 393 0.898789 AGGCGGAGAGGAAAACGAGA 60.899 55.000 0.00 0.00 0.00 4.04
391 394 0.037232 AAGGCGGAGAGGAAAACGAG 60.037 55.000 0.00 0.00 0.00 4.18
392 395 0.320421 CAAGGCGGAGAGGAAAACGA 60.320 55.000 0.00 0.00 0.00 3.85
393 396 1.298859 CCAAGGCGGAGAGGAAAACG 61.299 60.000 0.00 0.00 36.56 3.60
394 397 0.250770 ACCAAGGCGGAGAGGAAAAC 60.251 55.000 0.00 0.00 38.63 2.43
395 398 0.036306 GACCAAGGCGGAGAGGAAAA 59.964 55.000 0.00 0.00 38.63 2.29
396 399 1.677552 GACCAAGGCGGAGAGGAAA 59.322 57.895 0.00 0.00 38.63 3.13
397 400 2.646175 CGACCAAGGCGGAGAGGAA 61.646 63.158 0.00 0.00 38.63 3.36
398 401 3.068691 CGACCAAGGCGGAGAGGA 61.069 66.667 0.00 0.00 38.63 3.71
399 402 4.821589 GCGACCAAGGCGGAGAGG 62.822 72.222 0.00 0.00 38.63 3.69
408 411 3.276091 TTGTGCACCGCGACCAAG 61.276 61.111 15.69 0.00 0.00 3.61
409 412 3.578272 GTTGTGCACCGCGACCAA 61.578 61.111 15.69 0.00 0.00 3.67
412 415 2.474842 CTTACGTTGTGCACCGCGAC 62.475 60.000 28.44 15.48 0.00 5.19
413 416 2.279318 TTACGTTGTGCACCGCGA 60.279 55.556 28.44 14.33 0.00 5.87
414 417 1.623081 ATCTTACGTTGTGCACCGCG 61.623 55.000 22.71 22.71 0.00 6.46
415 418 0.179225 CATCTTACGTTGTGCACCGC 60.179 55.000 15.69 6.01 0.00 5.68
416 419 1.126113 GTCATCTTACGTTGTGCACCG 59.874 52.381 15.69 14.17 0.00 4.94
417 420 2.413837 AGTCATCTTACGTTGTGCACC 58.586 47.619 15.69 0.00 0.00 5.01
418 421 4.942765 GTAAGTCATCTTACGTTGTGCAC 58.057 43.478 10.75 10.75 43.95 4.57
426 429 9.720809 CCGTCTAGGTGTGTAAGTCATCTTACG 62.721 48.148 11.67 0.00 44.84 3.18
427 430 6.677431 CCGTCTAGGTGTGTAAGTCATCTTAC 60.677 46.154 10.12 10.12 43.75 2.34
428 431 5.356190 CCGTCTAGGTGTGTAAGTCATCTTA 59.644 44.000 0.00 0.00 33.66 2.10
429 432 4.158025 CCGTCTAGGTGTGTAAGTCATCTT 59.842 45.833 0.00 0.00 35.02 2.40
430 433 3.695060 CCGTCTAGGTGTGTAAGTCATCT 59.305 47.826 0.00 0.00 34.51 2.90
431 434 3.693085 TCCGTCTAGGTGTGTAAGTCATC 59.307 47.826 0.00 0.00 41.99 2.92
432 435 3.693807 TCCGTCTAGGTGTGTAAGTCAT 58.306 45.455 0.00 0.00 41.99 3.06
433 436 3.079578 CTCCGTCTAGGTGTGTAAGTCA 58.920 50.000 0.00 0.00 41.99 3.41
434 437 2.422832 CCTCCGTCTAGGTGTGTAAGTC 59.577 54.545 0.00 0.00 41.99 3.01
435 438 2.444421 CCTCCGTCTAGGTGTGTAAGT 58.556 52.381 0.00 0.00 41.99 2.24
436 439 1.749634 CCCTCCGTCTAGGTGTGTAAG 59.250 57.143 0.00 0.00 41.99 2.34
437 440 1.355381 TCCCTCCGTCTAGGTGTGTAA 59.645 52.381 0.00 0.00 41.99 2.41
438 441 0.994247 TCCCTCCGTCTAGGTGTGTA 59.006 55.000 0.00 0.00 41.99 2.90
439 442 0.323542 CTCCCTCCGTCTAGGTGTGT 60.324 60.000 0.00 0.00 41.99 3.72
440 443 0.323542 ACTCCCTCCGTCTAGGTGTG 60.324 60.000 0.00 0.00 41.99 3.82
441 444 1.064832 GTACTCCCTCCGTCTAGGTGT 60.065 57.143 0.00 0.00 41.99 4.16
442 445 1.212441 AGTACTCCCTCCGTCTAGGTG 59.788 57.143 0.00 0.00 41.99 4.00
443 446 1.594129 AGTACTCCCTCCGTCTAGGT 58.406 55.000 0.00 0.00 41.99 3.08
444 447 4.041938 AGAATAGTACTCCCTCCGTCTAGG 59.958 50.000 0.00 0.00 42.97 3.02
445 448 5.231702 AGAATAGTACTCCCTCCGTCTAG 57.768 47.826 0.00 0.00 0.00 2.43
446 449 5.643421 AAGAATAGTACTCCCTCCGTCTA 57.357 43.478 0.00 0.00 0.00 2.59
447 450 4.523168 AAGAATAGTACTCCCTCCGTCT 57.477 45.455 0.00 0.00 0.00 4.18
448 451 6.502652 GTTAAAGAATAGTACTCCCTCCGTC 58.497 44.000 0.00 0.00 0.00 4.79
449 452 5.067023 CGTTAAAGAATAGTACTCCCTCCGT 59.933 44.000 0.00 0.00 0.00 4.69
450 453 5.067023 ACGTTAAAGAATAGTACTCCCTCCG 59.933 44.000 0.00 0.00 0.00 4.63
451 454 6.096001 TGACGTTAAAGAATAGTACTCCCTCC 59.904 42.308 0.00 0.00 0.00 4.30
452 455 7.093322 TGACGTTAAAGAATAGTACTCCCTC 57.907 40.000 0.00 0.00 0.00 4.30
453 456 7.657023 ATGACGTTAAAGAATAGTACTCCCT 57.343 36.000 0.00 0.00 0.00 4.20
454 457 9.807649 TTTATGACGTTAAAGAATAGTACTCCC 57.192 33.333 0.00 0.00 0.00 4.30
497 500 5.657302 ACACAGGTAAACAGATAGGTCCTAG 59.343 44.000 4.57 0.00 0.00 3.02
498 501 5.421056 CACACAGGTAAACAGATAGGTCCTA 59.579 44.000 0.00 0.00 0.00 2.94
499 502 4.223032 CACACAGGTAAACAGATAGGTCCT 59.777 45.833 0.00 0.00 0.00 3.85
501 504 3.933332 GCACACAGGTAAACAGATAGGTC 59.067 47.826 0.00 0.00 0.00 3.85
506 518 4.997395 CAGTTAGCACACAGGTAAACAGAT 59.003 41.667 0.00 0.00 41.45 2.90
608 1206 3.627577 GCCTTCATACGTCACCATGAATT 59.372 43.478 10.95 0.00 39.69 2.17
664 1262 7.156000 TGTTATCCACTTAATCAAAGACACGA 58.844 34.615 0.00 0.00 38.67 4.35
672 1270 6.719370 AGCAAGGTTGTTATCCACTTAATCAA 59.281 34.615 0.00 0.00 0.00 2.57
711 1310 3.886505 TGACCGAAAACCAAATGTTAGCT 59.113 39.130 0.00 0.00 35.67 3.32
714 1313 4.462133 TCCTGACCGAAAACCAAATGTTA 58.538 39.130 0.00 0.00 35.67 2.41
729 1328 3.345508 ACCTCGGTATTTTTCCTGACC 57.654 47.619 0.00 0.00 0.00 4.02
735 1334 3.003378 GCATGCCTACCTCGGTATTTTTC 59.997 47.826 6.36 0.00 0.00 2.29
740 1339 1.816863 CGGCATGCCTACCTCGGTAT 61.817 60.000 33.07 0.00 0.00 2.73
778 1381 7.911651 TGCAAATGGGGATTAAAACTGATTAA 58.088 30.769 0.00 0.00 0.00 1.40
779 1382 7.487822 TGCAAATGGGGATTAAAACTGATTA 57.512 32.000 0.00 0.00 0.00 1.75
801 1404 6.924612 TGCCATGTCAATATCAATGTAAATGC 59.075 34.615 0.00 0.00 0.00 3.56
849 1452 5.012046 TCTCAGAACAAGAGCCAGAATACAA 59.988 40.000 0.00 0.00 33.15 2.41
860 1463 6.611381 TGTTTGTGTTTTCTCAGAACAAGAG 58.389 36.000 0.00 0.00 38.60 2.85
888 1491 5.583854 ACAGAACATTTCAGATCTTCGATGG 59.416 40.000 0.00 0.00 0.00 3.51
892 1495 4.331168 GGGACAGAACATTTCAGATCTTCG 59.669 45.833 0.00 0.00 0.00 3.79
896 1499 6.015940 ACAAAAGGGACAGAACATTTCAGATC 60.016 38.462 0.00 0.00 0.00 2.75
971 1591 0.612744 AAGCTGCCAGAGAGGAGTTC 59.387 55.000 0.00 0.00 41.22 3.01
1033 1653 4.077822 ACTTCTCCTTCAAGCCTCATTTG 58.922 43.478 0.00 0.00 0.00 2.32
1036 1656 4.042684 AGAAACTTCTCCTTCAAGCCTCAT 59.957 41.667 0.00 0.00 29.94 2.90
1062 1682 5.529791 TCTTGAGTGTCTTCTACCTTTTCG 58.470 41.667 0.00 0.00 0.00 3.46
1077 1697 4.259356 TGCCTTCATTCTCATCTTGAGTG 58.741 43.478 4.56 0.00 44.58 3.51
1087 1707 1.404391 CATGCCACTGCCTTCATTCTC 59.596 52.381 0.00 0.00 36.33 2.87
1113 1733 0.113776 ACGGTACCTCCTCTTGTGGA 59.886 55.000 10.90 0.00 34.52 4.02
1205 1828 5.163794 GCTAATTAACACGTGCCATACAAGT 60.164 40.000 17.22 2.81 42.09 3.16
1206 1829 5.064707 AGCTAATTAACACGTGCCATACAAG 59.935 40.000 17.22 6.69 0.00 3.16
1207 1830 4.938832 AGCTAATTAACACGTGCCATACAA 59.061 37.500 17.22 1.01 0.00 2.41
1208 1831 4.509616 AGCTAATTAACACGTGCCATACA 58.490 39.130 17.22 0.00 0.00 2.29
1209 1832 4.809426 AGAGCTAATTAACACGTGCCATAC 59.191 41.667 17.22 0.00 0.00 2.39
1210 1833 4.808895 CAGAGCTAATTAACACGTGCCATA 59.191 41.667 17.22 3.69 0.00 2.74
1211 1834 3.623060 CAGAGCTAATTAACACGTGCCAT 59.377 43.478 17.22 4.79 0.00 4.40
1212 1835 3.000041 CAGAGCTAATTAACACGTGCCA 59.000 45.455 17.22 0.00 0.00 4.92
1213 1836 3.000727 ACAGAGCTAATTAACACGTGCC 58.999 45.455 17.22 0.00 0.00 5.01
1214 1837 3.725010 GCACAGAGCTAATTAACACGTGC 60.725 47.826 17.22 12.95 40.21 5.34
1215 1838 3.991069 GCACAGAGCTAATTAACACGTG 58.009 45.455 15.48 15.48 41.15 4.49
1228 1851 2.093447 AGTACCCATACAAGCACAGAGC 60.093 50.000 0.00 0.00 37.34 4.09
1229 1852 3.735208 CGAGTACCCATACAAGCACAGAG 60.735 52.174 0.00 0.00 33.30 3.35
1230 1853 2.165641 CGAGTACCCATACAAGCACAGA 59.834 50.000 0.00 0.00 33.30 3.41
1231 1854 2.540515 CGAGTACCCATACAAGCACAG 58.459 52.381 0.00 0.00 33.30 3.66
1232 1855 1.404986 GCGAGTACCCATACAAGCACA 60.405 52.381 0.00 0.00 36.53 4.57
1233 1856 1.287425 GCGAGTACCCATACAAGCAC 58.713 55.000 0.00 0.00 36.53 4.40
1234 1857 0.899019 TGCGAGTACCCATACAAGCA 59.101 50.000 0.00 3.74 40.96 3.91
1251 1874 0.679002 TCTTGATTGCTGCCTCCTGC 60.679 55.000 0.00 0.00 41.77 4.85
1299 1922 3.572682 TGACCTTCGATATAAGTGGCGAT 59.427 43.478 0.00 0.00 32.38 4.58
1302 1925 4.083802 GCATTGACCTTCGATATAAGTGGC 60.084 45.833 0.00 0.00 0.00 5.01
1335 1958 4.252971 TGAAGGGAAGTGAAGACGTTAG 57.747 45.455 0.00 0.00 0.00 2.34
1339 1962 6.554334 TTAATTTGAAGGGAAGTGAAGACG 57.446 37.500 0.00 0.00 0.00 4.18
1445 2071 3.007940 CCCGCTCATGGTCCTGATATTTA 59.992 47.826 0.00 0.00 0.00 1.40
1469 2095 4.322198 GCCCAATCAGCAGAATCAAAGAAA 60.322 41.667 0.00 0.00 0.00 2.52
1580 2206 9.956797 CAAACAAATGAAGAAGTAAAACTGTTG 57.043 29.630 0.00 0.00 0.00 3.33
1678 2304 8.144478 TCTGGTGAGCATTAGTATCAAACTATC 58.856 37.037 0.00 0.00 40.41 2.08
1679 2305 8.023021 TCTGGTGAGCATTAGTATCAAACTAT 57.977 34.615 0.00 0.00 40.41 2.12
1680 2306 7.418337 TCTGGTGAGCATTAGTATCAAACTA 57.582 36.000 0.00 0.00 39.80 2.24
1681 2307 6.299805 TCTGGTGAGCATTAGTATCAAACT 57.700 37.500 0.00 0.00 42.62 2.66
1682 2308 6.512415 GCATCTGGTGAGCATTAGTATCAAAC 60.512 42.308 0.00 0.00 0.00 2.93
1683 2309 5.528690 GCATCTGGTGAGCATTAGTATCAAA 59.471 40.000 0.00 0.00 0.00 2.69
1684 2310 5.059161 GCATCTGGTGAGCATTAGTATCAA 58.941 41.667 0.00 0.00 0.00 2.57
1685 2311 4.101430 TGCATCTGGTGAGCATTAGTATCA 59.899 41.667 0.00 0.00 32.55 2.15
1686 2312 4.635223 TGCATCTGGTGAGCATTAGTATC 58.365 43.478 0.00 0.00 32.55 2.24
1700 2326 4.669318 CATAAGCTGAAGTTTGCATCTGG 58.331 43.478 0.00 0.00 0.00 3.86
1802 2428 4.694509 GCATGATCAGGACATCCACTTATC 59.305 45.833 12.39 0.00 38.89 1.75
1830 2456 9.760660 CAGCATACTTTGTAAAGTTAAGCTAAG 57.239 33.333 20.29 11.93 46.52 2.18
1908 2534 2.689471 TGCAAGTGACTTCAACATTGCT 59.311 40.909 18.44 0.00 42.59 3.91
1932 2559 4.820897 AGATGAACTTCGCACAACATAGA 58.179 39.130 0.00 0.00 0.00 1.98
1944 2571 8.594881 TTTAACTGAGTGAAGAGATGAACTTC 57.405 34.615 0.00 0.00 42.54 3.01
1971 2598 3.385111 ACAAGTGAAGAGACGGACTTCTT 59.615 43.478 15.46 6.43 42.63 2.52
1973 2600 3.053455 CACAAGTGAAGAGACGGACTTC 58.947 50.000 10.16 10.16 42.54 3.01
1978 2605 2.544267 GGAAACACAAGTGAAGAGACGG 59.456 50.000 7.28 0.00 0.00 4.79
1980 2607 4.442706 TCAGGAAACACAAGTGAAGAGAC 58.557 43.478 7.28 0.00 0.00 3.36
2091 2718 1.002544 ACAGGGAGTTGTCTGCTTAGC 59.997 52.381 0.00 0.00 34.57 3.09
2108 2735 6.260936 GGGACTACATTGACCATCAAATACAG 59.739 42.308 0.00 0.00 40.12 2.74
2163 2791 4.345257 AGGCAAACTCAAACTCTCTACAGA 59.655 41.667 0.00 0.00 0.00 3.41
2267 2895 0.239879 GCAGAACCGCGATTTTTCCA 59.760 50.000 8.23 0.00 0.00 3.53
2296 2924 4.810191 TTTAACAAGGCACAGTTTTGGT 57.190 36.364 0.00 0.00 31.71 3.67
2340 2969 0.252479 AGAGCTCAACCTCAGGCATG 59.748 55.000 17.77 0.00 34.26 4.06
2492 3121 7.166473 CAGTTGCTTGAAAGTGTTGTTAAGATC 59.834 37.037 0.00 0.00 0.00 2.75
2525 3182 6.182627 TGCCCCATTAGATATAAATCAGCAG 58.817 40.000 0.00 0.00 34.28 4.24
2582 3239 7.870445 TGGTTTCTACATTATTTTTGTCTTGGC 59.130 33.333 0.00 0.00 0.00 4.52
2589 3246 6.876789 GGGGGTTGGTTTCTACATTATTTTTG 59.123 38.462 0.00 0.00 0.00 2.44
2652 3310 5.866633 CCAAGTTGTGTGTGAAAAGCTAAAA 59.133 36.000 1.45 0.00 0.00 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.