Multiple sequence alignment - TraesCS3D01G241800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G241800 chr3D 100.000 6391 0 0 1 6391 336584352 336590742 0.000000e+00 11803
1 TraesCS3D01G241800 chr3D 91.756 279 22 1 5676 5954 325272212 325272489 2.790000e-103 387
2 TraesCS3D01G241800 chr3D 87.908 306 30 5 5695 5999 123971198 123971497 2.830000e-93 353
3 TraesCS3D01G241800 chr3D 99.415 171 1 0 3641 3811 42893229 42893059 1.730000e-80 311
4 TraesCS3D01G241800 chr3B 91.624 3510 177 51 209 3650 434417565 434421025 0.000000e+00 4745
5 TraesCS3D01G241800 chr3B 91.108 1687 77 28 4018 5678 434421111 434422750 0.000000e+00 2217
6 TraesCS3D01G241800 chr3B 83.523 176 21 3 1 170 434410837 434411010 2.390000e-34 158
7 TraesCS3D01G241800 chr3B 91.089 101 7 2 3804 3903 434421017 434421116 1.120000e-27 135
8 TraesCS3D01G241800 chr3B 79.670 182 22 6 1 170 434416131 434416309 4.050000e-22 117
9 TraesCS3D01G241800 chr3A 91.939 2084 105 26 244 2305 453930083 453932125 0.000000e+00 2859
10 TraesCS3D01G241800 chr3A 92.772 1674 77 20 4018 5664 453933172 453934828 0.000000e+00 2381
11 TraesCS3D01G241800 chr3A 94.065 775 39 6 2369 3141 453932129 453932898 0.000000e+00 1170
12 TraesCS3D01G241800 chr3A 95.930 172 6 1 6221 6391 453934868 453935039 1.750000e-70 278
13 TraesCS3D01G241800 chr3A 87.179 195 19 4 3456 3650 453932894 453933082 3.880000e-52 217
14 TraesCS3D01G241800 chr7A 88.566 551 53 8 5676 6224 478283143 478282601 0.000000e+00 660
15 TraesCS3D01G241800 chr4A 86.348 564 40 12 5696 6225 224901962 224902522 1.190000e-161 580
16 TraesCS3D01G241800 chr7D 84.099 566 68 11 5676 6224 208414717 208415277 1.580000e-145 527
17 TraesCS3D01G241800 chr7D 92.115 279 18 2 5676 5954 276254906 276255180 2.160000e-104 390
18 TraesCS3D01G241800 chr7D 96.757 185 2 3 3645 3828 102575937 102576118 8.050000e-79 305
19 TraesCS3D01G241800 chr7D 97.727 176 4 0 3639 3814 608667273 608667448 2.900000e-78 303
20 TraesCS3D01G241800 chr7D 95.238 189 6 3 3626 3813 575815044 575814858 4.840000e-76 296
21 TraesCS3D01G241800 chr2D 95.941 271 11 0 5954 6224 36802952 36803222 2.120000e-119 440
22 TraesCS3D01G241800 chr2D 93.962 265 16 0 5958 6222 120220547 120220811 9.980000e-108 401
23 TraesCS3D01G241800 chr2D 93.258 267 18 0 5958 6224 499699477 499699211 1.670000e-105 394
24 TraesCS3D01G241800 chr2D 99.415 171 0 1 3643 3813 602707808 602707977 6.220000e-80 309
25 TraesCS3D01G241800 chr2D 89.256 121 12 1 3902 4022 305940255 305940136 3.990000e-32 150
26 TraesCS3D01G241800 chr1D 81.964 499 70 8 5678 6160 29899703 29899209 7.720000e-109 405
27 TraesCS3D01G241800 chr1D 88.720 328 27 5 5676 5999 157783747 157783426 6.010000e-105 392
28 TraesCS3D01G241800 chr1D 92.115 279 18 2 5676 5954 121098780 121098506 2.160000e-104 390
29 TraesCS3D01G241800 chr1D 91.575 273 22 1 5955 6226 356179303 356179031 6.050000e-100 375
30 TraesCS3D01G241800 chr1D 86.585 328 35 8 5678 5999 230296569 230296893 2.830000e-93 353
31 TraesCS3D01G241800 chr1D 87.138 311 29 4 5713 6012 120208999 120209309 6.140000e-90 342
32 TraesCS3D01G241800 chr1D 89.916 119 10 2 3902 4019 42284727 42284844 1.110000e-32 152
33 TraesCS3D01G241800 chr6D 93.208 265 18 0 5961 6225 377851420 377851156 2.160000e-104 390
34 TraesCS3D01G241800 chr6D 89.256 121 12 1 3902 4022 329858710 329858591 3.990000e-32 150
35 TraesCS3D01G241800 chr4D 92.115 279 18 2 5676 5954 149660093 149659819 2.160000e-104 390
36 TraesCS3D01G241800 chr4D 92.115 279 18 2 5676 5954 235278570 235278296 2.160000e-104 390
37 TraesCS3D01G241800 chr4D 87.578 322 31 8 5684 5999 113983950 113983632 1.310000e-96 364
38 TraesCS3D01G241800 chr4D 86.095 338 36 6 5667 5999 307364487 307364818 2.830000e-93 353
39 TraesCS3D01G241800 chr4D 97.740 177 3 1 3636 3811 509649089 509649265 2.900000e-78 303
40 TraesCS3D01G241800 chr4D 96.667 180 5 1 3648 3827 509819040 509818862 1.350000e-76 298
41 TraesCS3D01G241800 chr2A 92.251 271 21 0 5956 6226 123414996 123415266 1.010000e-102 385
42 TraesCS3D01G241800 chr2A 92.424 264 20 0 5959 6222 183785455 183785192 1.680000e-100 377
43 TraesCS3D01G241800 chr5A 91.985 262 21 0 5961 6222 117125999 117125738 1.010000e-97 368
44 TraesCS3D01G241800 chr5D 98.844 173 2 0 3639 3811 432167250 432167422 6.220000e-80 309
45 TraesCS3D01G241800 chr5D 98.844 173 2 0 3648 3820 476789491 476789663 6.220000e-80 309
46 TraesCS3D01G241800 chr5D 89.256 121 12 1 3900 4020 257162796 257162677 3.990000e-32 150
47 TraesCS3D01G241800 chr1B 91.057 123 11 0 3900 4022 325270364 325270486 3.960000e-37 167
48 TraesCS3D01G241800 chr2B 90.476 126 11 1 3901 4026 8309920 8309796 1.430000e-36 165
49 TraesCS3D01G241800 chr1A 90.244 123 12 0 3900 4022 292769551 292769429 1.840000e-35 161
50 TraesCS3D01G241800 chr5B 90.000 120 10 2 3902 4020 590183645 590183763 3.090000e-33 154
51 TraesCS3D01G241800 chr4B 89.167 120 13 0 3901 4020 22880598 22880717 3.990000e-32 150


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G241800 chr3D 336584352 336590742 6390 False 11803.0 11803 100.00000 1 6391 1 chr3D.!!$F3 6390
1 TraesCS3D01G241800 chr3B 434416131 434422750 6619 False 1803.5 4745 88.37275 1 5678 4 chr3B.!!$F2 5677
2 TraesCS3D01G241800 chr3A 453930083 453935039 4956 False 1381.0 2859 92.37700 244 6391 5 chr3A.!!$F1 6147
3 TraesCS3D01G241800 chr7A 478282601 478283143 542 True 660.0 660 88.56600 5676 6224 1 chr7A.!!$R1 548
4 TraesCS3D01G241800 chr4A 224901962 224902522 560 False 580.0 580 86.34800 5696 6225 1 chr4A.!!$F1 529
5 TraesCS3D01G241800 chr7D 208414717 208415277 560 False 527.0 527 84.09900 5676 6224 1 chr7D.!!$F2 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
181 194 0.107456 CCCTGACATCCATTCGAGGG 59.893 60.0 0.0 0.0 34.44 4.30 F
1275 2550 0.326048 ATGAGGGAGGTCTGGTGGAG 60.326 60.0 0.0 0.0 0.00 3.86 F
1455 2730 0.175760 ATGTGCCGATAAGCGACAGT 59.824 50.0 0.0 0.0 44.57 3.55 F
3047 4352 0.318441 CGCGATGGGATGACAGGTAT 59.682 55.0 0.0 0.0 0.00 2.73 F
3661 4974 0.108281 GCAACTACTCCCTCCGTTCC 60.108 60.0 0.0 0.0 0.00 3.62 F
3921 5235 0.328258 ACTCCCTCCGTCCCAAATTG 59.672 55.0 0.0 0.0 0.00 2.32 F
5168 6502 0.107945 CGGGGCTTCTCTTCTTCCTG 60.108 60.0 0.0 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1410 2685 1.407936 TCTCCCAGCTAGCATCTGAC 58.592 55.000 18.83 0.00 33.54 3.51 R
3023 4328 0.461870 TGTCATCCCATCGCGAAAGG 60.462 55.000 15.24 18.55 0.00 3.11 R
3411 4722 0.031857 CCGTGTGGCATTGAAAGCAA 59.968 50.000 0.00 0.00 38.60 3.91 R
3996 5310 0.032813 TCCCTCCGTCCCGAATTACT 60.033 55.000 0.00 0.00 0.00 2.24 R
4718 6047 0.110486 TTCTTGTGGCACTTCCCCTC 59.890 55.000 19.83 0.00 0.00 4.30 R
5174 6508 0.469144 ACCCAACGCCAACAAGGATT 60.469 50.000 0.00 0.00 41.22 3.01 R
6281 7721 1.528309 AACCAACCGTCCCAAGCTG 60.528 57.895 0.00 0.00 0.00 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 0.958876 GGTCGGGCCTTTTTGACGAT 60.959 55.000 0.84 0.00 35.90 3.73
35 36 0.446616 GTCGGGCCTTTTTGACGATC 59.553 55.000 0.84 0.00 35.90 3.69
56 57 2.095263 CGTCGTTGGATGGCAAAAGAAT 60.095 45.455 0.00 0.00 0.00 2.40
57 58 3.244976 GTCGTTGGATGGCAAAAGAATG 58.755 45.455 0.00 0.00 0.00 2.67
58 59 2.890311 TCGTTGGATGGCAAAAGAATGT 59.110 40.909 0.00 0.00 0.00 2.71
65 72 4.262592 GGATGGCAAAAGAATGTTCCAACT 60.263 41.667 0.00 0.00 0.00 3.16
68 75 4.051237 GGCAAAAGAATGTTCCAACTGTC 58.949 43.478 0.00 0.00 0.00 3.51
74 81 3.392616 AGAATGTTCCAACTGTCAGACCT 59.607 43.478 6.91 0.00 0.00 3.85
89 96 6.051074 TGTCAGACCTAGACATTTGCATATG 58.949 40.000 14.68 14.68 40.80 1.78
97 104 8.573885 ACCTAGACATTTGCATATGATTTGATG 58.426 33.333 21.91 5.35 0.00 3.07
98 105 8.573885 CCTAGACATTTGCATATGATTTGATGT 58.426 33.333 21.91 8.35 0.00 3.06
99 106 9.961265 CTAGACATTTGCATATGATTTGATGTT 57.039 29.630 21.91 0.00 0.00 2.71
102 109 8.122306 ACATTTGCATATGATTTGATGTTTCG 57.878 30.769 21.91 0.00 0.00 3.46
104 111 5.246145 TGCATATGATTTGATGTTTCGCA 57.754 34.783 6.97 0.00 0.00 5.10
107 114 6.253942 TGCATATGATTTGATGTTTCGCAAAG 59.746 34.615 6.97 0.00 37.41 2.77
117 124 3.218453 TGTTTCGCAAAGGAGATTTCCA 58.782 40.909 4.89 0.00 46.64 3.53
118 125 3.634448 TGTTTCGCAAAGGAGATTTCCAA 59.366 39.130 4.89 0.00 46.64 3.53
120 127 5.475220 TGTTTCGCAAAGGAGATTTCCAATA 59.525 36.000 4.89 0.00 46.64 1.90
121 128 6.152661 TGTTTCGCAAAGGAGATTTCCAATAT 59.847 34.615 4.89 0.00 46.64 1.28
122 129 6.773976 TTCGCAAAGGAGATTTCCAATATT 57.226 33.333 4.89 0.00 46.64 1.28
123 130 6.773976 TCGCAAAGGAGATTTCCAATATTT 57.226 33.333 4.89 0.00 46.64 1.40
125 132 7.703328 TCGCAAAGGAGATTTCCAATATTTAC 58.297 34.615 4.89 0.00 46.64 2.01
127 134 7.645340 CGCAAAGGAGATTTCCAATATTTACAG 59.355 37.037 4.89 0.00 46.64 2.74
128 135 7.922811 GCAAAGGAGATTTCCAATATTTACAGG 59.077 37.037 4.89 0.00 46.64 4.00
170 183 1.211457 GTTGGAGAGATGCCCTGACAT 59.789 52.381 0.00 0.00 0.00 3.06
171 184 1.126488 TGGAGAGATGCCCTGACATC 58.874 55.000 0.00 0.00 45.62 3.06
172 185 0.396060 GGAGAGATGCCCTGACATCC 59.604 60.000 1.06 0.00 46.29 3.51
173 186 1.126488 GAGAGATGCCCTGACATCCA 58.874 55.000 1.06 0.00 46.29 3.41
176 189 2.106166 AGAGATGCCCTGACATCCATTC 59.894 50.000 1.06 0.00 46.29 2.67
177 190 1.202734 AGATGCCCTGACATCCATTCG 60.203 52.381 1.06 0.00 46.29 3.34
178 191 0.839277 ATGCCCTGACATCCATTCGA 59.161 50.000 0.00 0.00 0.00 3.71
179 192 0.178767 TGCCCTGACATCCATTCGAG 59.821 55.000 0.00 0.00 0.00 4.04
180 193 0.533755 GCCCTGACATCCATTCGAGG 60.534 60.000 0.00 0.00 0.00 4.63
181 194 0.107456 CCCTGACATCCATTCGAGGG 59.893 60.000 0.00 0.00 34.44 4.30
182 195 1.123077 CCTGACATCCATTCGAGGGA 58.877 55.000 9.96 9.96 39.14 4.20
183 196 1.202580 CCTGACATCCATTCGAGGGAC 60.203 57.143 9.77 0.00 37.23 4.46
184 197 1.482182 CTGACATCCATTCGAGGGACA 59.518 52.381 9.77 4.05 37.23 4.02
185 198 1.905894 TGACATCCATTCGAGGGACAA 59.094 47.619 9.77 0.00 37.23 3.18
186 199 2.304470 TGACATCCATTCGAGGGACAAA 59.696 45.455 9.77 0.00 37.23 2.83
187 200 2.939103 GACATCCATTCGAGGGACAAAG 59.061 50.000 9.77 4.33 37.23 2.77
188 201 2.571653 ACATCCATTCGAGGGACAAAGA 59.428 45.455 9.77 0.00 37.23 2.52
189 202 3.201290 CATCCATTCGAGGGACAAAGAG 58.799 50.000 9.77 0.00 37.23 2.85
194 207 4.322801 CCATTCGAGGGACAAAGAGTACTT 60.323 45.833 0.00 0.00 38.05 2.24
199 212 4.322049 CGAGGGACAAAGAGTACTTGTGAT 60.322 45.833 3.42 0.00 36.39 3.06
206 219 5.045578 ACAAAGAGTACTTGTGATATGCCCT 60.046 40.000 0.00 0.00 36.39 5.19
207 220 5.700402 AAGAGTACTTGTGATATGCCCTT 57.300 39.130 0.00 0.00 34.80 3.95
208 221 6.808321 AAGAGTACTTGTGATATGCCCTTA 57.192 37.500 0.00 0.00 34.80 2.69
209 222 6.808321 AGAGTACTTGTGATATGCCCTTAA 57.192 37.500 0.00 0.00 0.00 1.85
210 223 6.821388 AGAGTACTTGTGATATGCCCTTAAG 58.179 40.000 0.00 0.00 0.00 1.85
213 1450 7.630082 AGTACTTGTGATATGCCCTTAAGAAA 58.370 34.615 3.36 0.00 0.00 2.52
216 1453 7.830739 ACTTGTGATATGCCCTTAAGAAAAAG 58.169 34.615 3.36 0.00 0.00 2.27
218 1455 7.630242 TGTGATATGCCCTTAAGAAAAAGAG 57.370 36.000 3.36 0.00 0.00 2.85
249 1486 3.284323 AGTGCTTGTACTACGTGTCAG 57.716 47.619 0.00 0.00 0.00 3.51
256 1502 4.492494 TGTACTACGTGTCAGGATCCTA 57.508 45.455 15.67 0.00 0.00 2.94
315 1561 3.579586 TCAAGCATTTGCATCTCCCTTTT 59.420 39.130 5.20 0.00 45.16 2.27
316 1562 3.881937 AGCATTTGCATCTCCCTTTTC 57.118 42.857 5.20 0.00 45.16 2.29
618 1882 1.604879 TGCGTATTTTGCAGGCCCA 60.605 52.632 0.00 0.00 37.44 5.36
619 1883 0.969917 TGCGTATTTTGCAGGCCCAT 60.970 50.000 0.00 0.00 37.44 4.00
620 1884 1.028905 GCGTATTTTGCAGGCCCATA 58.971 50.000 0.00 0.00 0.00 2.74
621 1885 1.407258 GCGTATTTTGCAGGCCCATAA 59.593 47.619 0.00 0.00 0.00 1.90
622 1886 2.035832 GCGTATTTTGCAGGCCCATAAT 59.964 45.455 0.00 0.84 0.00 1.28
630 1894 4.729552 TGCAGGCCCATAATCTAATCTT 57.270 40.909 0.00 0.00 0.00 2.40
640 1904 9.606631 GCCCATAATCTAATCTTCTCGAATATT 57.393 33.333 0.00 0.00 0.00 1.28
687 1952 2.668212 CCCCTGCTTGCGAACGAA 60.668 61.111 0.00 0.00 0.00 3.85
794 2059 3.373748 TGTGTTTGATTTGATCCGATCCG 59.626 43.478 5.91 0.00 0.00 4.18
795 2060 3.621268 GTGTTTGATTTGATCCGATCCGA 59.379 43.478 5.91 0.00 0.00 4.55
796 2061 3.621268 TGTTTGATTTGATCCGATCCGAC 59.379 43.478 5.91 0.00 0.00 4.79
797 2062 2.134201 TGATTTGATCCGATCCGACG 57.866 50.000 5.91 0.00 0.00 5.12
798 2063 0.784778 GATTTGATCCGATCCGACGC 59.215 55.000 5.91 0.00 0.00 5.19
880 2148 7.610305 ACAAGTCCTACATGGTTATGGTTTAAG 59.390 37.037 0.00 0.00 38.66 1.85
994 2263 1.398390 GCACGCAGGTAGAATTGGAAG 59.602 52.381 0.00 0.00 0.00 3.46
1051 2326 1.022735 GATCAGCAGCATGTCCAAGG 58.977 55.000 0.00 0.00 39.31 3.61
1052 2327 1.035932 ATCAGCAGCATGTCCAAGGC 61.036 55.000 0.00 0.00 39.31 4.35
1267 2542 1.153349 GCACCGAATGAGGGAGGTC 60.153 63.158 0.00 0.00 34.25 3.85
1275 2550 0.326048 ATGAGGGAGGTCTGGTGGAG 60.326 60.000 0.00 0.00 0.00 3.86
1455 2730 0.175760 ATGTGCCGATAAGCGACAGT 59.824 50.000 0.00 0.00 44.57 3.55
1671 2946 8.616799 ACCTTCTCTATGAGGTTATCTTTCTT 57.383 34.615 0.00 0.00 0.00 2.52
1690 2965 9.591792 TCTTTCTTATTCTCATCTGTGTATGTG 57.408 33.333 0.00 0.00 0.00 3.21
1693 2968 7.330262 TCTTATTCTCATCTGTGTATGTGCAA 58.670 34.615 0.00 0.00 0.00 4.08
1853 3134 1.768275 TCTCAAGAGAGCACCCAACAA 59.232 47.619 0.00 0.00 41.81 2.83
1876 3157 4.084507 GTCTTCACAATCTTTTGATCGCG 58.915 43.478 0.00 0.00 38.40 5.87
1885 3166 4.022464 TCTTTTGATCGCGTGTGTTTTT 57.978 36.364 5.77 0.00 0.00 1.94
1936 3217 4.080356 AGCTCAGACCCTGTTTGCATAATA 60.080 41.667 0.00 0.00 32.61 0.98
1969 3251 4.202567 ACAGCCACCTTTTCTCCTTGAATA 60.203 41.667 0.00 0.00 34.24 1.75
2020 3302 3.758554 CCTAATTGGGTGGTTCAGTTCAG 59.241 47.826 0.00 0.00 0.00 3.02
2035 3317 3.875727 CAGTTCAGACCAGCTGGAATATG 59.124 47.826 39.19 26.95 44.98 1.78
2122 3405 7.769044 AGCACTGAAGAAAAGTAAAGAACACTA 59.231 33.333 0.00 0.00 0.00 2.74
2123 3406 8.560374 GCACTGAAGAAAAGTAAAGAACACTAT 58.440 33.333 0.00 0.00 0.00 2.12
2137 3433 6.932356 AGAACACTATGCCATTACAATCAG 57.068 37.500 0.00 0.00 0.00 2.90
2150 3446 1.293924 CAATCAGGACTGCATCGACC 58.706 55.000 0.00 0.00 0.00 4.79
2157 3453 2.111878 CTGCATCGACCCCCATCC 59.888 66.667 0.00 0.00 0.00 3.51
2161 3457 1.146930 CATCGACCCCCATCCACTG 59.853 63.158 0.00 0.00 0.00 3.66
2167 3463 4.802051 CCCCATCCACTGTGCCCG 62.802 72.222 1.29 0.00 0.00 6.13
2180 3476 4.643387 GCCCGACACCAACCTGCT 62.643 66.667 0.00 0.00 0.00 4.24
2184 3480 1.086696 CCGACACCAACCTGCTAATG 58.913 55.000 0.00 0.00 0.00 1.90
2185 3481 1.610624 CCGACACCAACCTGCTAATGT 60.611 52.381 0.00 0.00 0.00 2.71
2233 3533 9.539825 TTGCTCTTGTTATAAAGAAAATGCAAA 57.460 25.926 0.00 0.00 39.07 3.68
2248 3548 4.647291 ATGCAAAAGTAACTCGAAGTCG 57.353 40.909 0.00 0.00 41.45 4.18
2287 3587 4.509600 TGTTTTCATGGGTTCGCATTTTTC 59.490 37.500 0.00 0.00 0.00 2.29
2292 3592 2.496111 TGGGTTCGCATTTTTCGTAGT 58.504 42.857 0.00 0.00 0.00 2.73
2305 3605 7.456253 CATTTTTCGTAGTTGTCTACTCATGG 58.544 38.462 0.00 0.00 42.95 3.66
2306 3606 4.713824 TTCGTAGTTGTCTACTCATGGG 57.286 45.455 0.00 0.00 42.95 4.00
2310 3610 3.059352 AGTTGTCTACTCATGGGCAAC 57.941 47.619 8.56 8.56 37.18 4.17
2312 3612 2.744202 GTTGTCTACTCATGGGCAACTG 59.256 50.000 9.16 0.00 34.96 3.16
2313 3613 1.339055 TGTCTACTCATGGGCAACTGC 60.339 52.381 0.00 0.00 41.14 4.40
2325 3625 0.931662 GCAACTGCAGCAAGTGTTCG 60.932 55.000 15.27 0.00 41.59 3.95
2344 3644 7.116233 AGTGTTCGATGTTTGAAAAATATTGCC 59.884 33.333 0.00 0.00 0.00 4.52
2363 3663 7.999450 ATTGCCAAAACATTTTCCATTATGT 57.001 28.000 0.00 0.00 36.58 2.29
2410 3710 3.700538 ACTGTGCATGAACAATATGGGT 58.299 40.909 8.18 0.00 0.00 4.51
2599 3900 9.181061 TGATGATGATGATGTGTTCATTACTTT 57.819 29.630 0.00 0.00 45.29 2.66
2639 3940 6.128715 GCTGTGTTGATATGATCTGGTTATCG 60.129 42.308 0.00 0.00 0.00 2.92
2898 4203 7.280730 GTTTTTGTTTACCGCTAAAAACTGT 57.719 32.000 13.73 0.00 43.91 3.55
2926 4231 5.584649 TCGGTGCTTTAAATGTCCATCTTAG 59.415 40.000 0.00 0.00 0.00 2.18
2933 4238 7.201857 GCTTTAAATGTCCATCTTAGGATGCTT 60.202 37.037 9.28 0.90 45.73 3.91
2934 4239 9.342308 CTTTAAATGTCCATCTTAGGATGCTTA 57.658 33.333 9.28 0.00 45.73 3.09
3023 4328 1.438651 TAGCACATTTGGTCAGTCGC 58.561 50.000 0.00 0.00 34.50 5.19
3047 4352 0.318441 CGCGATGGGATGACAGGTAT 59.682 55.000 0.00 0.00 0.00 2.73
3152 4457 2.787473 TGCAGAGACCAGGGTTAATG 57.213 50.000 0.00 0.00 0.00 1.90
3153 4458 2.265367 TGCAGAGACCAGGGTTAATGA 58.735 47.619 0.00 0.00 0.00 2.57
3156 4461 3.629398 GCAGAGACCAGGGTTAATGAATG 59.371 47.826 0.00 0.00 0.00 2.67
3205 4512 8.181573 TCCGTTGAATTTGTGATAAATAGCTTC 58.818 33.333 0.00 0.00 0.00 3.86
3225 4532 7.009550 AGCTTCTGATATGAGACTCCAATAGA 58.990 38.462 0.00 0.00 0.00 1.98
3258 4568 8.183104 TCTCATAGATGTATTTACCTGTGAGG 57.817 38.462 12.65 0.00 41.86 3.86
3271 4581 2.956333 CCTGTGAGGTCGATATGTACCA 59.044 50.000 5.98 0.00 38.30 3.25
3272 4582 3.383505 CCTGTGAGGTCGATATGTACCAA 59.616 47.826 5.98 0.00 38.30 3.67
3273 4583 4.142026 CCTGTGAGGTCGATATGTACCAAA 60.142 45.833 5.98 0.00 38.30 3.28
3282 4592 6.183360 GGTCGATATGTACCAAAGACCTACTT 60.183 42.308 13.77 0.00 42.28 2.24
3286 4596 5.836024 ATGTACCAAAGACCTACTTTCCA 57.164 39.130 0.00 0.00 45.66 3.53
3299 4609 4.082245 CCTACTTTCCATTCCAAATGCGTT 60.082 41.667 0.00 0.00 0.00 4.84
3355 4666 3.058224 GTGTTGAGAAGACCAAATTCCCG 60.058 47.826 0.00 0.00 0.00 5.14
3356 4667 2.488153 GTTGAGAAGACCAAATTCCCGG 59.512 50.000 0.00 0.00 0.00 5.73
3357 4668 1.095600 GAGAAGACCAAATTCCCGGC 58.904 55.000 0.00 0.00 0.00 6.13
3358 4669 0.323451 AGAAGACCAAATTCCCGGCC 60.323 55.000 0.00 0.00 0.00 6.13
3375 4686 2.019984 GGCCCTCATTCAGACATTCAC 58.980 52.381 0.00 0.00 0.00 3.18
3378 4689 4.125703 GCCCTCATTCAGACATTCACTAG 58.874 47.826 0.00 0.00 0.00 2.57
3388 4699 9.896645 ATTCAGACATTCACTAGTGTAATGAAT 57.103 29.630 32.12 26.77 42.43 2.57
3404 4715 7.275560 GTGTAATGAATTTCTGGTTAACATGGC 59.724 37.037 8.10 0.00 0.00 4.40
3407 4718 4.021544 TGAATTTCTGGTTAACATGGCCAC 60.022 41.667 8.16 0.00 0.00 5.01
3408 4719 2.969821 TTCTGGTTAACATGGCCACT 57.030 45.000 8.16 0.00 0.00 4.00
3411 4722 2.375174 TCTGGTTAACATGGCCACTCTT 59.625 45.455 8.16 1.45 0.00 2.85
3432 4743 0.878416 GCTTTCAATGCCACACGGTA 59.122 50.000 0.00 0.00 33.28 4.02
3439 4750 2.744741 CAATGCCACACGGTACAACATA 59.255 45.455 0.00 0.00 33.28 2.29
3465 4776 6.769822 TCCTTTGGATTGAATAGAGAAGATGC 59.230 38.462 0.00 0.00 0.00 3.91
3480 4791 6.095580 AGAGAAGATGCACGACTAGTTAATCA 59.904 38.462 0.00 0.00 0.00 2.57
3498 4809 2.923121 TCATCCTTGGAACTGCATAGC 58.077 47.619 0.00 0.00 0.00 2.97
3517 4828 1.323534 GCGCACAGTAGTTAATGTCCG 59.676 52.381 0.30 0.00 38.34 4.79
3528 4839 9.245962 CAGTAGTTAATGTCCGTTAGAAATAGG 57.754 37.037 0.00 0.00 0.00 2.57
3558 4869 8.397906 GCTTGTGAGACTAATATTTTGCATACA 58.602 33.333 0.00 0.00 0.00 2.29
3593 4904 4.371681 AGGGAAGGCTTATACAAGAAGGA 58.628 43.478 0.00 0.00 33.20 3.36
3623 4936 6.985653 TGAAATGTAGGGAATGGTTTTTCA 57.014 33.333 0.00 0.00 31.50 2.69
3636 4949 3.193267 TGGTTTTTCATAGAGTGGCATGC 59.807 43.478 9.90 9.90 0.00 4.06
3642 4955 6.381481 TTTCATAGAGTGGCATGCATTTAG 57.619 37.500 21.36 1.20 0.00 1.85
3643 4956 3.817084 TCATAGAGTGGCATGCATTTAGC 59.183 43.478 21.36 0.00 45.96 3.09
3656 4969 3.206964 GCATTTAGCAACTACTCCCTCC 58.793 50.000 0.00 0.00 44.79 4.30
3657 4970 3.458189 CATTTAGCAACTACTCCCTCCG 58.542 50.000 0.00 0.00 0.00 4.63
3658 4971 2.226962 TTAGCAACTACTCCCTCCGT 57.773 50.000 0.00 0.00 0.00 4.69
3659 4972 2.226962 TAGCAACTACTCCCTCCGTT 57.773 50.000 0.00 0.00 0.00 4.44
3660 4973 0.896226 AGCAACTACTCCCTCCGTTC 59.104 55.000 0.00 0.00 0.00 3.95
3661 4974 0.108281 GCAACTACTCCCTCCGTTCC 60.108 60.000 0.00 0.00 0.00 3.62
3662 4975 1.558233 CAACTACTCCCTCCGTTCCT 58.442 55.000 0.00 0.00 0.00 3.36
3663 4976 2.731572 CAACTACTCCCTCCGTTCCTA 58.268 52.381 0.00 0.00 0.00 2.94
3664 4977 3.094572 CAACTACTCCCTCCGTTCCTAA 58.905 50.000 0.00 0.00 0.00 2.69
3665 4978 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
3666 4979 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
3667 4980 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
3668 4981 4.892345 ACTACTCCCTCCGTTCCTAAATAC 59.108 45.833 0.00 0.00 0.00 1.89
3669 4982 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
3670 4983 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
3671 4984 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
3672 4985 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
3673 4986 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
3674 4987 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
3675 4988 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
3676 4989 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
3677 4990 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
3678 4991 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
3679 4992 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
3680 4993 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
3681 4994 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
3682 4995 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
3683 4996 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
3684 4997 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
3685 4998 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
3686 4999 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
3688 5001 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
3689 5002 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
3690 5003 6.959639 ACTTGTCTTTCTAGGCATTTCAAA 57.040 33.333 0.00 0.00 35.56 2.69
3691 5004 7.530426 ACTTGTCTTTCTAGGCATTTCAAAT 57.470 32.000 0.00 0.00 35.56 2.32
3692 5005 7.373493 ACTTGTCTTTCTAGGCATTTCAAATG 58.627 34.615 5.68 5.68 35.56 2.32
3693 5006 7.231317 ACTTGTCTTTCTAGGCATTTCAAATGA 59.769 33.333 14.65 0.00 35.56 2.57
3694 5007 6.913170 TGTCTTTCTAGGCATTTCAAATGAC 58.087 36.000 14.65 11.48 29.10 3.06
3695 5008 6.716628 TGTCTTTCTAGGCATTTCAAATGACT 59.283 34.615 22.35 22.35 41.04 3.41
3696 5009 7.882791 TGTCTTTCTAGGCATTTCAAATGACTA 59.117 33.333 22.19 22.19 38.54 2.59
3697 5010 8.897752 GTCTTTCTAGGCATTTCAAATGACTAT 58.102 33.333 23.50 4.64 38.80 2.12
3698 5011 9.113838 TCTTTCTAGGCATTTCAAATGACTATC 57.886 33.333 23.50 1.52 38.80 2.08
3699 5012 8.806429 TTTCTAGGCATTTCAAATGACTATCA 57.194 30.769 23.50 12.23 38.80 2.15
3700 5013 7.792374 TCTAGGCATTTCAAATGACTATCAC 57.208 36.000 23.50 0.15 38.80 3.06
3701 5014 7.337938 TCTAGGCATTTCAAATGACTATCACA 58.662 34.615 23.50 5.75 38.80 3.58
3702 5015 7.994911 TCTAGGCATTTCAAATGACTATCACAT 59.005 33.333 23.50 1.77 38.80 3.21
3703 5016 9.276590 CTAGGCATTTCAAATGACTATCACATA 57.723 33.333 23.50 4.36 38.80 2.29
3704 5017 7.934457 AGGCATTTCAAATGACTATCACATAC 58.066 34.615 17.52 0.00 35.20 2.39
3705 5018 6.852853 GGCATTTCAAATGACTATCACATACG 59.147 38.462 14.65 0.00 0.00 3.06
3706 5019 6.852853 GCATTTCAAATGACTATCACATACGG 59.147 38.462 14.65 0.00 0.00 4.02
3707 5020 7.254761 GCATTTCAAATGACTATCACATACGGA 60.255 37.037 14.65 0.00 0.00 4.69
3708 5021 8.777413 CATTTCAAATGACTATCACATACGGAT 58.223 33.333 3.82 0.00 0.00 4.18
3709 5022 7.713764 TTCAAATGACTATCACATACGGATG 57.286 36.000 5.94 5.94 39.16 3.51
3711 5024 7.947282 TCAAATGACTATCACATACGGATGTA 58.053 34.615 14.23 2.61 44.82 2.29
3712 5025 8.585018 TCAAATGACTATCACATACGGATGTAT 58.415 33.333 14.23 10.02 44.82 2.29
3753 5066 7.036220 AGTGTAGATTCACTCATTTTACTCCG 58.964 38.462 0.00 0.00 44.07 4.63
3754 5067 6.812160 GTGTAGATTCACTCATTTTACTCCGT 59.188 38.462 0.00 0.00 35.68 4.69
3755 5068 7.972277 GTGTAGATTCACTCATTTTACTCCGTA 59.028 37.037 0.00 0.00 35.68 4.02
3756 5069 8.692710 TGTAGATTCACTCATTTTACTCCGTAT 58.307 33.333 0.00 0.00 0.00 3.06
3757 5070 8.969267 GTAGATTCACTCATTTTACTCCGTATG 58.031 37.037 0.00 0.00 0.00 2.39
3758 5071 7.556844 AGATTCACTCATTTTACTCCGTATGT 58.443 34.615 0.00 0.00 0.00 2.29
3759 5072 8.692710 AGATTCACTCATTTTACTCCGTATGTA 58.307 33.333 0.00 0.00 0.00 2.29
3760 5073 8.873215 ATTCACTCATTTTACTCCGTATGTAG 57.127 34.615 0.00 0.00 0.00 2.74
3761 5074 7.400599 TCACTCATTTTACTCCGTATGTAGT 57.599 36.000 0.00 0.00 0.00 2.73
3762 5075 7.478322 TCACTCATTTTACTCCGTATGTAGTC 58.522 38.462 0.00 0.00 0.00 2.59
3763 5076 7.121611 TCACTCATTTTACTCCGTATGTAGTCA 59.878 37.037 0.00 0.00 0.00 3.41
3764 5077 7.220300 CACTCATTTTACTCCGTATGTAGTCAC 59.780 40.741 0.00 0.00 0.00 3.67
3765 5078 7.122353 ACTCATTTTACTCCGTATGTAGTCACT 59.878 37.037 0.00 0.00 0.00 3.41
3766 5079 7.833786 TCATTTTACTCCGTATGTAGTCACTT 58.166 34.615 0.00 0.00 0.00 3.16
3767 5080 7.758076 TCATTTTACTCCGTATGTAGTCACTTG 59.242 37.037 0.00 0.00 0.00 3.16
3768 5081 6.579666 TTTACTCCGTATGTAGTCACTTGT 57.420 37.500 0.00 0.00 0.00 3.16
3769 5082 6.579666 TTACTCCGTATGTAGTCACTTGTT 57.420 37.500 0.00 0.00 0.00 2.83
3770 5083 4.806330 ACTCCGTATGTAGTCACTTGTTG 58.194 43.478 0.00 0.00 0.00 3.33
3771 5084 4.521639 ACTCCGTATGTAGTCACTTGTTGA 59.478 41.667 0.00 0.00 0.00 3.18
3772 5085 5.010314 ACTCCGTATGTAGTCACTTGTTGAA 59.990 40.000 0.00 0.00 35.39 2.69
3773 5086 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
3774 5087 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
3775 5088 6.367695 TCCGTATGTAGTCACTTGTTGAAATG 59.632 38.462 0.00 0.00 35.39 2.32
3776 5089 6.015504 CGTATGTAGTCACTTGTTGAAATGC 58.984 40.000 0.00 0.00 35.39 3.56
3777 5090 4.829064 TGTAGTCACTTGTTGAAATGCC 57.171 40.909 0.00 0.00 35.39 4.40
3778 5091 4.460263 TGTAGTCACTTGTTGAAATGCCT 58.540 39.130 0.00 0.00 35.39 4.75
3779 5092 5.616270 TGTAGTCACTTGTTGAAATGCCTA 58.384 37.500 0.00 0.00 35.39 3.93
3780 5093 5.700832 TGTAGTCACTTGTTGAAATGCCTAG 59.299 40.000 0.00 0.00 35.39 3.02
3781 5094 4.973168 AGTCACTTGTTGAAATGCCTAGA 58.027 39.130 0.00 0.00 35.39 2.43
3782 5095 5.376625 AGTCACTTGTTGAAATGCCTAGAA 58.623 37.500 0.00 0.00 35.39 2.10
3783 5096 5.827797 AGTCACTTGTTGAAATGCCTAGAAA 59.172 36.000 0.00 0.00 35.39 2.52
3784 5097 6.016777 AGTCACTTGTTGAAATGCCTAGAAAG 60.017 38.462 0.00 0.00 35.39 2.62
3785 5098 6.017109 GTCACTTGTTGAAATGCCTAGAAAGA 60.017 38.462 0.00 0.00 35.39 2.52
3786 5099 6.017109 TCACTTGTTGAAATGCCTAGAAAGAC 60.017 38.462 0.00 0.00 0.00 3.01
3787 5100 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
3788 5101 6.321181 ACTTGTTGAAATGCCTAGAAAGACAA 59.679 34.615 0.00 0.00 0.00 3.18
3789 5102 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
3790 5103 5.827797 TGTTGAAATGCCTAGAAAGACAAGT 59.172 36.000 0.00 0.00 0.00 3.16
3791 5104 6.995686 TGTTGAAATGCCTAGAAAGACAAGTA 59.004 34.615 0.00 0.00 0.00 2.24
3792 5105 7.665559 TGTTGAAATGCCTAGAAAGACAAGTAT 59.334 33.333 0.00 0.00 0.00 2.12
3793 5106 8.515414 GTTGAAATGCCTAGAAAGACAAGTATT 58.485 33.333 0.00 0.00 0.00 1.89
3794 5107 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
3795 5108 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
3797 5110 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
3798 5111 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
3799 5112 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
3800 5113 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
3801 5114 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
3802 5115 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
3803 5116 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
3806 5119 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
3808 5121 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
3864 5178 6.219772 AGGAACAGAGGGGGTAATTTTCTTAT 59.780 38.462 0.00 0.00 0.00 1.73
3911 5225 8.750298 ACTGTCATTATTATTATACTCCCTCCG 58.250 37.037 0.00 0.00 0.00 4.63
3912 5226 8.660295 TGTCATTATTATTATACTCCCTCCGT 57.340 34.615 0.00 0.00 0.00 4.69
3913 5227 8.746530 TGTCATTATTATTATACTCCCTCCGTC 58.253 37.037 0.00 0.00 0.00 4.79
3914 5228 8.196103 GTCATTATTATTATACTCCCTCCGTCC 58.804 40.741 0.00 0.00 0.00 4.79
3915 5229 7.343833 TCATTATTATTATACTCCCTCCGTCCC 59.656 40.741 0.00 0.00 0.00 4.46
3916 5230 4.474303 TTATTATACTCCCTCCGTCCCA 57.526 45.455 0.00 0.00 0.00 4.37
3917 5231 2.852714 TTATACTCCCTCCGTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
3918 5232 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
3919 5233 2.191981 ATACTCCCTCCGTCCCAAAT 57.808 50.000 0.00 0.00 0.00 2.32
3920 5234 1.961133 TACTCCCTCCGTCCCAAATT 58.039 50.000 0.00 0.00 0.00 1.82
3921 5235 0.328258 ACTCCCTCCGTCCCAAATTG 59.672 55.000 0.00 0.00 0.00 2.32
3922 5236 1.001393 TCCCTCCGTCCCAAATTGC 60.001 57.895 0.00 0.00 0.00 3.56
3923 5237 1.000896 CCCTCCGTCCCAAATTGCT 60.001 57.895 0.00 0.00 0.00 3.91
3924 5238 0.611896 CCCTCCGTCCCAAATTGCTT 60.612 55.000 0.00 0.00 0.00 3.91
3925 5239 0.527565 CCTCCGTCCCAAATTGCTTG 59.472 55.000 0.00 0.00 34.52 4.01
3926 5240 1.247567 CTCCGTCCCAAATTGCTTGT 58.752 50.000 0.00 0.00 32.65 3.16
3927 5241 1.200020 CTCCGTCCCAAATTGCTTGTC 59.800 52.381 0.00 0.00 32.65 3.18
3928 5242 0.958091 CCGTCCCAAATTGCTTGTCA 59.042 50.000 0.00 0.00 32.65 3.58
3929 5243 1.335872 CCGTCCCAAATTGCTTGTCAC 60.336 52.381 0.00 0.00 32.65 3.67
3930 5244 1.336440 CGTCCCAAATTGCTTGTCACA 59.664 47.619 0.00 0.00 32.65 3.58
3931 5245 2.223688 CGTCCCAAATTGCTTGTCACAA 60.224 45.455 0.00 0.00 32.65 3.33
3932 5246 3.736433 CGTCCCAAATTGCTTGTCACAAA 60.736 43.478 0.00 0.00 32.65 2.83
3933 5247 4.187694 GTCCCAAATTGCTTGTCACAAAA 58.812 39.130 0.00 0.00 32.65 2.44
3934 5248 4.633565 GTCCCAAATTGCTTGTCACAAAAA 59.366 37.500 0.00 0.00 32.65 1.94
3935 5249 5.296531 GTCCCAAATTGCTTGTCACAAAAAT 59.703 36.000 0.00 0.00 32.65 1.82
3936 5250 5.296283 TCCCAAATTGCTTGTCACAAAAATG 59.704 36.000 0.00 0.00 32.65 2.32
3937 5251 5.505985 CCCAAATTGCTTGTCACAAAAATGG 60.506 40.000 0.00 0.00 32.65 3.16
3938 5252 5.296283 CCAAATTGCTTGTCACAAAAATGGA 59.704 36.000 0.00 0.00 33.43 3.41
3939 5253 6.016943 CCAAATTGCTTGTCACAAAAATGGAT 60.017 34.615 0.00 0.00 33.43 3.41
3940 5254 7.172875 CCAAATTGCTTGTCACAAAAATGGATA 59.827 33.333 0.00 0.00 33.43 2.59
3941 5255 7.894376 AATTGCTTGTCACAAAAATGGATAG 57.106 32.000 0.00 0.00 0.00 2.08
3942 5256 6.647334 TTGCTTGTCACAAAAATGGATAGA 57.353 33.333 0.00 0.00 0.00 1.98
3943 5257 6.647334 TGCTTGTCACAAAAATGGATAGAA 57.353 33.333 0.00 0.00 0.00 2.10
3944 5258 7.048629 TGCTTGTCACAAAAATGGATAGAAA 57.951 32.000 0.00 0.00 0.00 2.52
3945 5259 7.669427 TGCTTGTCACAAAAATGGATAGAAAT 58.331 30.769 0.00 0.00 0.00 2.17
3946 5260 7.599621 TGCTTGTCACAAAAATGGATAGAAATG 59.400 33.333 0.00 0.00 0.00 2.32
3947 5261 7.063780 GCTTGTCACAAAAATGGATAGAAATGG 59.936 37.037 0.00 0.00 0.00 3.16
3948 5262 7.773489 TGTCACAAAAATGGATAGAAATGGA 57.227 32.000 0.00 0.00 0.00 3.41
3949 5263 8.365060 TGTCACAAAAATGGATAGAAATGGAT 57.635 30.769 0.00 0.00 0.00 3.41
3950 5264 8.252417 TGTCACAAAAATGGATAGAAATGGATG 58.748 33.333 0.00 0.00 0.00 3.51
3951 5265 8.253113 GTCACAAAAATGGATAGAAATGGATGT 58.747 33.333 0.00 0.00 0.00 3.06
3952 5266 9.473007 TCACAAAAATGGATAGAAATGGATGTA 57.527 29.630 0.00 0.00 0.00 2.29
3960 5274 8.072321 TGGATAGAAATGGATGTATCTAGAGC 57.928 38.462 0.00 0.00 0.00 4.09
3961 5275 7.898100 TGGATAGAAATGGATGTATCTAGAGCT 59.102 37.037 0.00 0.00 0.00 4.09
3962 5276 9.415008 GGATAGAAATGGATGTATCTAGAGCTA 57.585 37.037 0.00 0.00 0.00 3.32
3970 5284 9.862371 ATGGATGTATCTAGAGCTAAAAATACG 57.138 33.333 0.00 0.00 0.00 3.06
3971 5285 8.857098 TGGATGTATCTAGAGCTAAAAATACGT 58.143 33.333 0.00 0.00 0.00 3.57
3972 5286 9.344309 GGATGTATCTAGAGCTAAAAATACGTC 57.656 37.037 15.80 15.80 35.98 4.34
3991 5305 8.749841 ATACGTCTAGATACATTCATTTCTGC 57.250 34.615 0.00 0.00 0.00 4.26
3992 5306 5.687730 ACGTCTAGATACATTCATTTCTGCG 59.312 40.000 0.00 0.00 0.00 5.18
3993 5307 5.915196 CGTCTAGATACATTCATTTCTGCGA 59.085 40.000 0.00 0.00 0.00 5.10
3994 5308 6.129326 CGTCTAGATACATTCATTTCTGCGAC 60.129 42.308 0.00 0.00 0.00 5.19
3995 5309 5.915196 TCTAGATACATTCATTTCTGCGACG 59.085 40.000 0.00 0.00 0.00 5.12
3996 5310 4.682787 AGATACATTCATTTCTGCGACGA 58.317 39.130 0.00 0.00 0.00 4.20
3997 5311 4.742167 AGATACATTCATTTCTGCGACGAG 59.258 41.667 0.00 0.00 0.00 4.18
3998 5312 2.688507 ACATTCATTTCTGCGACGAGT 58.311 42.857 0.00 0.00 0.00 4.18
3999 5313 3.845178 ACATTCATTTCTGCGACGAGTA 58.155 40.909 0.00 0.00 0.00 2.59
4000 5314 4.242475 ACATTCATTTCTGCGACGAGTAA 58.758 39.130 0.00 0.00 0.00 2.24
4001 5315 4.870426 ACATTCATTTCTGCGACGAGTAAT 59.130 37.500 0.00 0.00 0.00 1.89
4002 5316 5.351465 ACATTCATTTCTGCGACGAGTAATT 59.649 36.000 0.00 0.00 0.00 1.40
4003 5317 5.450376 TTCATTTCTGCGACGAGTAATTC 57.550 39.130 0.00 0.00 0.00 2.17
4092 5413 6.245115 TGTGTTTATGCTGTTCTCAGATTG 57.755 37.500 0.00 0.00 43.76 2.67
4160 5481 6.303839 AGTTTGTGAATAGGTAAGAAAGCCA 58.696 36.000 0.00 0.00 0.00 4.75
4210 5531 8.571461 ACATTTATCTGAATTGATGTCAGTGT 57.429 30.769 1.67 0.00 42.63 3.55
4225 5546 6.560003 TGTCAGTGTCCTTATATGGAATGT 57.440 37.500 8.86 0.00 37.93 2.71
4227 5548 7.047891 TGTCAGTGTCCTTATATGGAATGTTC 58.952 38.462 8.86 0.00 37.93 3.18
4367 5690 9.563748 TTAGCAACACAGGTAATTATATTACCC 57.436 33.333 19.82 7.47 44.18 3.69
4428 5757 5.551760 ACTCTTTGAATATTTGCTCACCG 57.448 39.130 0.00 0.00 0.00 4.94
4447 5776 1.201647 CGATGTAGTGGAGTGGTCGTT 59.798 52.381 0.00 0.00 0.00 3.85
4620 5949 8.206126 TCTCCATTTGCTGGTATTATGATCTA 57.794 34.615 0.00 0.00 46.08 1.98
4685 6014 1.913778 AATGGTCACTGCATGCAAGA 58.086 45.000 22.88 19.05 0.00 3.02
4712 6041 0.461548 TCATACTTGAGCTGCTCCGG 59.538 55.000 25.61 19.36 0.00 5.14
4763 6092 6.605594 TCATTTTAGAGAGAGAGAGGAAGTCC 59.394 42.308 0.00 0.00 0.00 3.85
4957 6291 1.335051 GCCGTTCCTTTGTTCTTGAGC 60.335 52.381 0.00 0.00 0.00 4.26
4965 6299 6.377327 TCCTTTGTTCTTGAGCTAGTTTTG 57.623 37.500 0.00 0.00 0.00 2.44
5078 6412 6.634805 CGGCATAGTTCTATCCATAATCACT 58.365 40.000 0.00 0.00 0.00 3.41
5168 6502 0.107945 CGGGGCTTCTCTTCTTCCTG 60.108 60.000 0.00 0.00 0.00 3.86
5174 6508 3.041946 GCTTCTCTTCTTCCTGGGGATA 58.958 50.000 0.00 0.00 0.00 2.59
5428 6767 7.064016 CCTCAAACTCTGAAATAGTGTAAGCTC 59.936 40.741 0.00 0.00 33.05 4.09
5506 6853 4.597507 TGGGAAGTAAACTGATTCCTGTCT 59.402 41.667 3.44 0.00 41.85 3.41
5552 6899 5.408604 CAGGCGTATAGAAAATGATACACCC 59.591 44.000 0.00 0.00 33.13 4.61
5625 6987 5.021033 AGAGAGAGATGTTCAATGCGATT 57.979 39.130 0.00 0.00 0.00 3.34
5641 7003 4.574892 TGCGATTTGAGTAACAGATTGGA 58.425 39.130 0.00 0.00 0.00 3.53
5642 7004 5.185454 TGCGATTTGAGTAACAGATTGGAT 58.815 37.500 0.00 0.00 0.00 3.41
5643 7005 5.294306 TGCGATTTGAGTAACAGATTGGATC 59.706 40.000 0.00 0.00 0.00 3.36
5644 7006 5.277538 GCGATTTGAGTAACAGATTGGATCC 60.278 44.000 4.20 4.20 0.00 3.36
5647 7009 7.710907 CGATTTGAGTAACAGATTGGATCCTTA 59.289 37.037 14.23 1.00 0.00 2.69
5651 7013 8.737168 TGAGTAACAGATTGGATCCTTATTTG 57.263 34.615 14.23 13.49 0.00 2.32
5653 7015 9.832445 GAGTAACAGATTGGATCCTTATTTGTA 57.168 33.333 14.23 5.21 0.00 2.41
5785 7175 7.466746 ACATGCAACACTTCATTTATTAGGT 57.533 32.000 0.00 0.00 0.00 3.08
5864 7259 5.763876 AGCTATGTTACCACTTTCCTCTT 57.236 39.130 0.00 0.00 0.00 2.85
5873 7268 5.836821 ACCACTTTCCTCTTTTTCTTCAC 57.163 39.130 0.00 0.00 0.00 3.18
5884 7279 7.502226 TCCTCTTTTTCTTCACTTATTGCTTGA 59.498 33.333 0.00 0.00 0.00 3.02
5986 7398 9.134055 AGACTAGTCATAATGGGTAGTAACTTC 57.866 37.037 24.44 0.00 0.00 3.01
5989 7401 7.598759 AGTCATAATGGGTAGTAACTTCGAT 57.401 36.000 0.00 0.00 0.00 3.59
6000 7412 8.193438 GGGTAGTAACTTCGATTAGTAACATGT 58.807 37.037 9.71 0.00 31.69 3.21
6057 7482 5.963176 TGTGTTGTATCATGCATCACTTT 57.037 34.783 15.42 0.00 37.42 2.66
6163 7598 8.916062 TCTTCATTAATTACATGCCACATCATT 58.084 29.630 0.00 0.00 0.00 2.57
6175 7610 6.291648 TGCCACATCATTTATTTTGCCTAA 57.708 33.333 0.00 0.00 0.00 2.69
6230 7670 3.448660 ACCGTGGGTAGTCTAATGGTAAC 59.551 47.826 0.00 0.00 32.11 2.50
6262 7702 4.184649 TGAGACTGATAGTGATAGGCCA 57.815 45.455 5.01 0.00 0.00 5.36
6285 7725 4.222353 TCCAGTCTGGAAGCAGCT 57.778 55.556 19.75 0.00 45.00 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 0.446616 GATCGTCAAAAAGGCCCGAC 59.553 55.000 0.00 0.00 0.00 4.79
19 20 0.446616 GACGATCGTCAAAAAGGCCC 59.553 55.000 36.61 11.50 44.02 5.80
20 21 0.094730 CGACGATCGTCAAAAAGGCC 59.905 55.000 38.62 16.52 44.77 5.19
21 22 3.562869 CGACGATCGTCAAAAAGGC 57.437 52.632 38.62 17.18 44.77 4.35
31 32 1.081556 TTGCCATCCAACGACGATCG 61.082 55.000 14.88 14.88 46.93 3.69
34 35 0.871722 CTTTTGCCATCCAACGACGA 59.128 50.000 0.00 0.00 31.97 4.20
35 36 0.871722 TCTTTTGCCATCCAACGACG 59.128 50.000 0.00 0.00 31.97 5.12
40 41 3.645212 TGGAACATTCTTTTGCCATCCAA 59.355 39.130 0.00 0.00 33.06 3.53
56 57 3.321111 GTCTAGGTCTGACAGTTGGAACA 59.679 47.826 10.38 0.00 34.80 3.18
57 58 3.321111 TGTCTAGGTCTGACAGTTGGAAC 59.679 47.826 10.38 0.00 39.23 3.62
58 59 3.572642 TGTCTAGGTCTGACAGTTGGAA 58.427 45.455 10.38 0.00 39.23 3.53
65 72 4.558226 ATGCAAATGTCTAGGTCTGACA 57.442 40.909 10.38 0.00 46.58 3.58
68 75 7.741027 AATCATATGCAAATGTCTAGGTCTG 57.259 36.000 0.00 0.00 0.00 3.51
89 96 5.046910 TCTCCTTTGCGAAACATCAAATC 57.953 39.130 0.00 0.00 32.51 2.17
97 104 3.915437 TGGAAATCTCCTTTGCGAAAC 57.085 42.857 0.00 0.00 42.94 2.78
98 105 6.773976 ATATTGGAAATCTCCTTTGCGAAA 57.226 33.333 0.00 0.00 42.94 3.46
99 106 6.773976 AATATTGGAAATCTCCTTTGCGAA 57.226 33.333 0.00 0.00 42.94 4.70
102 109 7.922811 CCTGTAAATATTGGAAATCTCCTTTGC 59.077 37.037 0.00 0.00 42.94 3.68
104 111 8.971073 CACCTGTAAATATTGGAAATCTCCTTT 58.029 33.333 0.00 0.00 42.94 3.11
107 114 7.881775 ACACCTGTAAATATTGGAAATCTCC 57.118 36.000 0.00 0.00 42.81 3.71
117 124 8.450964 CAGATCACGAAAACACCTGTAAATATT 58.549 33.333 0.00 0.00 0.00 1.28
118 125 7.822334 TCAGATCACGAAAACACCTGTAAATAT 59.178 33.333 0.00 0.00 0.00 1.28
120 127 5.995282 TCAGATCACGAAAACACCTGTAAAT 59.005 36.000 0.00 0.00 0.00 1.40
121 128 5.361427 TCAGATCACGAAAACACCTGTAAA 58.639 37.500 0.00 0.00 0.00 2.01
122 129 4.951254 TCAGATCACGAAAACACCTGTAA 58.049 39.130 0.00 0.00 0.00 2.41
123 130 4.038763 ACTCAGATCACGAAAACACCTGTA 59.961 41.667 0.00 0.00 0.00 2.74
125 132 3.393800 ACTCAGATCACGAAAACACCTG 58.606 45.455 0.00 0.00 0.00 4.00
127 134 3.807622 TCAACTCAGATCACGAAAACACC 59.192 43.478 0.00 0.00 0.00 4.16
128 135 4.508124 ACTCAACTCAGATCACGAAAACAC 59.492 41.667 0.00 0.00 0.00 3.32
135 148 3.057245 TCTCCAACTCAACTCAGATCACG 60.057 47.826 0.00 0.00 0.00 4.35
170 183 2.257207 ACTCTTTGTCCCTCGAATGGA 58.743 47.619 0.00 0.00 0.00 3.41
171 184 2.770164 ACTCTTTGTCCCTCGAATGG 57.230 50.000 0.00 0.00 0.00 3.16
172 185 4.457834 AGTACTCTTTGTCCCTCGAATG 57.542 45.455 0.00 0.00 0.00 2.67
173 186 4.283722 ACAAGTACTCTTTGTCCCTCGAAT 59.716 41.667 0.00 0.00 0.00 3.34
176 189 3.005472 TCACAAGTACTCTTTGTCCCTCG 59.995 47.826 0.00 0.00 0.00 4.63
177 190 4.602340 TCACAAGTACTCTTTGTCCCTC 57.398 45.455 0.00 0.00 0.00 4.30
178 191 6.644347 CATATCACAAGTACTCTTTGTCCCT 58.356 40.000 0.00 0.00 0.00 4.20
179 192 5.294552 GCATATCACAAGTACTCTTTGTCCC 59.705 44.000 0.00 0.00 0.00 4.46
180 193 5.294552 GGCATATCACAAGTACTCTTTGTCC 59.705 44.000 0.00 0.00 0.00 4.02
181 194 5.294552 GGGCATATCACAAGTACTCTTTGTC 59.705 44.000 0.00 0.00 0.00 3.18
182 195 5.045578 AGGGCATATCACAAGTACTCTTTGT 60.046 40.000 0.00 0.00 0.00 2.83
183 196 5.431765 AGGGCATATCACAAGTACTCTTTG 58.568 41.667 0.00 0.00 0.00 2.77
184 197 5.700402 AGGGCATATCACAAGTACTCTTT 57.300 39.130 0.00 0.00 0.00 2.52
185 198 5.700402 AAGGGCATATCACAAGTACTCTT 57.300 39.130 0.00 0.00 0.00 2.85
186 199 6.611642 TCTTAAGGGCATATCACAAGTACTCT 59.388 38.462 1.85 0.00 0.00 3.24
187 200 6.817184 TCTTAAGGGCATATCACAAGTACTC 58.183 40.000 1.85 0.00 0.00 2.59
188 201 6.808321 TCTTAAGGGCATATCACAAGTACT 57.192 37.500 1.85 0.00 0.00 2.73
189 202 7.859325 TTTCTTAAGGGCATATCACAAGTAC 57.141 36.000 1.85 0.00 0.00 2.73
194 207 7.630242 CTCTTTTTCTTAAGGGCATATCACA 57.370 36.000 1.85 0.00 0.00 3.58
206 219 8.721478 CACTATTACTGCTGCTCTTTTTCTTAA 58.279 33.333 0.00 0.00 0.00 1.85
207 220 7.148407 GCACTATTACTGCTGCTCTTTTTCTTA 60.148 37.037 0.00 0.00 0.00 2.10
208 221 6.348868 GCACTATTACTGCTGCTCTTTTTCTT 60.349 38.462 0.00 0.00 0.00 2.52
209 222 5.123027 GCACTATTACTGCTGCTCTTTTTCT 59.877 40.000 0.00 0.00 0.00 2.52
210 223 5.123027 AGCACTATTACTGCTGCTCTTTTTC 59.877 40.000 0.00 0.00 43.54 2.29
213 1450 4.213564 AGCACTATTACTGCTGCTCTTT 57.786 40.909 0.00 0.00 43.54 2.52
216 1453 3.265791 ACAAGCACTATTACTGCTGCTC 58.734 45.455 0.00 0.00 44.45 4.26
218 1455 4.184629 AGTACAAGCACTATTACTGCTGC 58.815 43.478 0.00 0.00 44.45 5.25
235 1472 3.361281 AGGATCCTGACACGTAGTACA 57.639 47.619 15.29 0.00 41.61 2.90
236 1473 5.999721 GATTAGGATCCTGACACGTAGTAC 58.000 45.833 25.28 0.00 41.61 2.73
256 1502 3.916989 ACCACTCCTTTTCTACCAGGATT 59.083 43.478 0.00 0.00 38.58 3.01
357 1603 0.107848 GGAATCGCGGAAGAAGGGAA 60.108 55.000 6.13 0.00 34.28 3.97
427 1684 3.032667 GCGGAAGGGAGGAGGAACC 62.033 68.421 0.00 0.00 39.35 3.62
687 1952 2.308722 ATGAGTTCATGGGGCGGGT 61.309 57.895 0.00 0.00 34.83 5.28
794 2059 2.486951 ATACACCACATACGAGCGTC 57.513 50.000 0.00 0.00 0.00 5.19
795 2060 3.344904 GTATACACCACATACGAGCGT 57.655 47.619 0.00 0.00 0.00 5.07
861 2126 8.691661 AATAGGCTTAAACCATAACCATGTAG 57.308 34.615 0.00 0.00 0.00 2.74
1267 2542 3.866582 GCCGGGGATCTCCACCAG 61.867 72.222 13.38 0.00 35.50 4.00
1410 2685 1.407936 TCTCCCAGCTAGCATCTGAC 58.592 55.000 18.83 0.00 33.54 3.51
1455 2730 3.068165 CGGCTACAGTGTAATCATCCTCA 59.932 47.826 4.21 0.00 0.00 3.86
1533 2808 2.742116 GGAAGGATGGCCTGCGGTA 61.742 63.158 3.32 0.00 46.28 4.02
1671 2946 8.510243 AAATTGCACATACACAGATGAGAATA 57.490 30.769 0.00 0.00 0.00 1.75
1693 2968 5.104374 CGACATAAAATTGCAGGCAGAAAT 58.896 37.500 0.00 0.00 0.00 2.17
1809 3090 7.615365 AGAATCAATAGTTGGCCATCAGTTAAA 59.385 33.333 16.12 0.00 0.00 1.52
1853 3134 4.143030 CGCGATCAAAAGATTGTGAAGACT 60.143 41.667 0.00 0.00 37.79 3.24
1885 3166 8.741841 TGAAGCAATCAGATAATTTTCACATGA 58.258 29.630 0.00 0.00 33.04 3.07
1915 3196 6.949352 ATTATTATGCAAACAGGGTCTGAG 57.051 37.500 0.00 0.00 35.18 3.35
1936 3217 5.954150 AGAAAAGGTGGCTGTCATGATAATT 59.046 36.000 0.00 0.00 0.00 1.40
1969 3251 5.278120 CGCATGATTGATATGTCACCACAAT 60.278 40.000 0.00 0.00 35.64 2.71
2068 3351 3.578716 AGTAGCACCAGTGAAAGCTCTTA 59.421 43.478 0.99 0.00 38.47 2.10
2099 3382 8.560374 GCATAGTGTTCTTTACTTTTCTTCAGT 58.440 33.333 0.00 0.00 0.00 3.41
2101 3384 7.500892 TGGCATAGTGTTCTTTACTTTTCTTCA 59.499 33.333 0.00 0.00 0.00 3.02
2103 3386 7.817418 TGGCATAGTGTTCTTTACTTTTCTT 57.183 32.000 0.00 0.00 0.00 2.52
2122 3405 2.954318 GCAGTCCTGATTGTAATGGCAT 59.046 45.455 0.00 0.00 0.00 4.40
2123 3406 2.290832 TGCAGTCCTGATTGTAATGGCA 60.291 45.455 0.00 0.00 0.00 4.92
2137 3433 2.666596 GATGGGGGTCGATGCAGTCC 62.667 65.000 0.00 0.00 0.00 3.85
2150 3446 4.802051 CGGGCACAGTGGATGGGG 62.802 72.222 1.84 0.00 30.55 4.96
2161 3457 2.978010 CAGGTTGGTGTCGGGCAC 60.978 66.667 3.65 3.65 46.97 5.01
2167 3463 2.226437 CACACATTAGCAGGTTGGTGTC 59.774 50.000 0.00 0.00 37.38 3.67
2175 3471 2.479566 AGACCACACACATTAGCAGG 57.520 50.000 0.00 0.00 0.00 4.85
2180 3476 8.678593 TTGTTAAACATAGACCACACACATTA 57.321 30.769 0.00 0.00 0.00 1.90
2184 3480 6.613755 ACTTGTTAAACATAGACCACACAC 57.386 37.500 0.00 0.00 0.00 3.82
2185 3481 6.459024 GCAACTTGTTAAACATAGACCACACA 60.459 38.462 0.00 0.00 0.00 3.72
2223 3522 6.085068 CGACTTCGAGTTACTTTTGCATTTTC 59.915 38.462 0.00 0.00 43.02 2.29
2225 3524 5.235616 TCGACTTCGAGTTACTTTTGCATTT 59.764 36.000 0.00 0.00 44.22 2.32
2248 3548 7.254084 CCATGAAAACAAACACTAAAGTTGCTC 60.254 37.037 0.00 0.00 0.00 4.26
2292 3592 2.875672 GCAGTTGCCCATGAGTAGACAA 60.876 50.000 0.00 0.00 34.31 3.18
2305 3605 0.595825 GAACACTTGCTGCAGTTGCC 60.596 55.000 16.64 0.00 41.18 4.52
2306 3606 0.931662 CGAACACTTGCTGCAGTTGC 60.932 55.000 16.64 1.91 42.50 4.17
2310 3610 0.870393 ACATCGAACACTTGCTGCAG 59.130 50.000 10.11 10.11 0.00 4.41
2312 3612 2.046313 CAAACATCGAACACTTGCTGC 58.954 47.619 0.00 0.00 0.00 5.25
2313 3613 3.607422 TCAAACATCGAACACTTGCTG 57.393 42.857 0.00 0.00 0.00 4.41
2325 3625 9.896263 ATGTTTTGGCAATATTTTTCAAACATC 57.104 25.926 12.76 7.58 0.00 3.06
2363 3663 6.451064 TCAGAAGAAGAGATGCGTACAATA 57.549 37.500 0.00 0.00 0.00 1.90
2410 3710 7.668052 ACCACAACATTTAGATTTGCCTACTTA 59.332 33.333 0.00 0.00 0.00 2.24
2529 3830 9.988815 GTATCATGTGATGAGGTAGATAAAACT 57.011 33.333 5.78 0.00 43.53 2.66
2599 3900 3.613030 ACACAGCATATGCAAGACATCA 58.387 40.909 28.62 0.00 45.16 3.07
2867 4171 8.617761 TTTAGCGGTAAACAAAAACTTTAGTG 57.382 30.769 15.44 0.00 0.00 2.74
2898 4203 4.643463 TGGACATTTAAAGCACCGAACTA 58.357 39.130 0.00 0.00 0.00 2.24
2926 4231 5.189180 GGACAGATTCCCATATAAGCATCC 58.811 45.833 0.00 0.00 38.70 3.51
2933 4238 5.093236 ACTCCTGGACAGATTCCCATATA 57.907 43.478 0.00 0.00 45.17 0.86
2934 4239 3.946824 ACTCCTGGACAGATTCCCATAT 58.053 45.455 0.00 0.00 45.17 1.78
3023 4328 0.461870 TGTCATCCCATCGCGAAAGG 60.462 55.000 15.24 18.55 0.00 3.11
3061 4366 5.711976 ACAGTTAGGAAAATGGAAGTGATGG 59.288 40.000 0.00 0.00 35.01 3.51
3077 4382 2.353406 CCTACAACCCGACACAGTTAGG 60.353 54.545 0.00 0.00 0.00 2.69
3173 4479 9.874205 ATTTATCACAAATTCAACGGATGATTT 57.126 25.926 0.00 0.00 38.03 2.17
3178 4484 8.225603 AGCTATTTATCACAAATTCAACGGAT 57.774 30.769 0.00 0.00 0.00 4.18
3205 4512 9.775854 AAACAATCTATTGGAGTCTCATATCAG 57.224 33.333 7.56 0.00 41.96 2.90
3251 4561 4.649088 TTGGTACATATCGACCTCACAG 57.351 45.455 0.00 0.00 39.30 3.66
3255 4565 4.341520 AGGTCTTTGGTACATATCGACCTC 59.658 45.833 13.85 0.00 44.62 3.85
3258 4568 6.388435 AGTAGGTCTTTGGTACATATCGAC 57.612 41.667 0.00 0.00 39.30 4.20
3260 4570 6.700520 GGAAAGTAGGTCTTTGGTACATATCG 59.299 42.308 0.00 0.00 45.15 2.92
3272 4582 5.185828 GCATTTGGAATGGAAAGTAGGTCTT 59.814 40.000 3.16 0.00 38.10 3.01
3273 4583 4.706962 GCATTTGGAATGGAAAGTAGGTCT 59.293 41.667 3.16 0.00 0.00 3.85
3282 4592 4.220382 AGAATGAACGCATTTGGAATGGAA 59.780 37.500 3.16 0.00 44.47 3.53
3286 4596 5.192927 TCCTAGAATGAACGCATTTGGAAT 58.807 37.500 0.00 0.00 44.47 3.01
3299 4609 8.160765 TGGTTGAAGTACAAAATCCTAGAATGA 58.839 33.333 0.00 0.00 40.36 2.57
3355 4666 2.019984 GTGAATGTCTGAATGAGGGCC 58.980 52.381 0.00 0.00 0.00 5.80
3356 4667 2.996631 AGTGAATGTCTGAATGAGGGC 58.003 47.619 0.00 0.00 0.00 5.19
3357 4668 5.114780 CACTAGTGAATGTCTGAATGAGGG 58.885 45.833 18.45 0.00 0.00 4.30
3358 4669 5.728471 ACACTAGTGAATGTCTGAATGAGG 58.272 41.667 29.30 0.00 0.00 3.86
3378 4689 7.275560 GCCATGTTAACCAGAAATTCATTACAC 59.724 37.037 2.48 0.00 0.00 2.90
3388 4699 3.153919 GAGTGGCCATGTTAACCAGAAA 58.846 45.455 9.72 0.00 33.12 2.52
3404 4715 2.036217 TGGCATTGAAAGCAAAGAGTGG 59.964 45.455 0.00 0.00 37.59 4.00
3407 4718 3.054878 GTGTGGCATTGAAAGCAAAGAG 58.945 45.455 0.00 0.00 37.59 2.85
3408 4719 2.543445 CGTGTGGCATTGAAAGCAAAGA 60.543 45.455 0.00 0.00 37.59 2.52
3411 4722 0.031857 CCGTGTGGCATTGAAAGCAA 59.968 50.000 0.00 0.00 38.60 3.91
3432 4743 9.347240 CTCTATTCAATCCAAAGGATATGTTGT 57.653 33.333 0.00 0.00 42.27 3.32
3439 4750 7.447853 GCATCTTCTCTATTCAATCCAAAGGAT 59.552 37.037 0.00 0.00 45.46 3.24
3465 4776 5.902681 TCCAAGGATGATTAACTAGTCGTG 58.097 41.667 0.00 0.00 0.00 4.35
3480 4791 1.959042 CGCTATGCAGTTCCAAGGAT 58.041 50.000 0.00 0.00 0.00 3.24
3517 4828 7.550906 AGTCTCACAAGCATTCCTATTTCTAAC 59.449 37.037 0.00 0.00 0.00 2.34
3528 4839 7.970061 TGCAAAATATTAGTCTCACAAGCATTC 59.030 33.333 0.00 0.00 0.00 2.67
3558 4869 5.723860 AGCCTTCCCTTCTCAATTCTATT 57.276 39.130 0.00 0.00 0.00 1.73
3568 4879 5.104318 CCTTCTTGTATAAGCCTTCCCTTCT 60.104 44.000 0.00 0.00 33.82 2.85
3599 4912 7.366847 TGAAAAACCATTCCCTACATTTCAA 57.633 32.000 0.00 0.00 33.91 2.69
3600 4913 6.985653 TGAAAAACCATTCCCTACATTTCA 57.014 33.333 0.00 0.00 34.30 2.69
3601 4914 8.966868 TCTATGAAAAACCATTCCCTACATTTC 58.033 33.333 0.00 0.00 0.00 2.17
3613 4926 4.142093 GCATGCCACTCTATGAAAAACCAT 60.142 41.667 6.36 0.00 0.00 3.55
3636 4949 3.118738 ACGGAGGGAGTAGTTGCTAAATG 60.119 47.826 0.00 0.00 0.00 2.32
3642 4955 0.108281 GGAACGGAGGGAGTAGTTGC 60.108 60.000 0.00 0.00 0.00 4.17
3643 4956 1.558233 AGGAACGGAGGGAGTAGTTG 58.442 55.000 0.00 0.00 0.00 3.16
3644 4957 3.463048 TTAGGAACGGAGGGAGTAGTT 57.537 47.619 0.00 0.00 0.00 2.24
3645 4958 3.463048 TTTAGGAACGGAGGGAGTAGT 57.537 47.619 0.00 0.00 0.00 2.73
3646 4959 5.139001 AGTATTTAGGAACGGAGGGAGTAG 58.861 45.833 0.00 0.00 0.00 2.57
3647 4960 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
3648 4961 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
3649 4962 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
3650 4963 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
3651 4964 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
3652 4965 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
3653 4966 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
3654 4967 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
3655 4968 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
3656 4969 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
3657 4970 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
3658 4971 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
3659 4972 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
3660 4973 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
3662 4975 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
3663 4976 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
3664 4977 8.635765 TTGAAATGCCTAGAAAGACAAGTATT 57.364 30.769 0.00 0.00 0.00 1.89
3665 4978 8.635765 TTTGAAATGCCTAGAAAGACAAGTAT 57.364 30.769 0.00 0.00 0.00 2.12
3666 4979 8.514594 CATTTGAAATGCCTAGAAAGACAAGTA 58.485 33.333 4.82 0.00 0.00 2.24
3667 4980 6.959639 TTTGAAATGCCTAGAAAGACAAGT 57.040 33.333 0.00 0.00 0.00 3.16
3668 4981 7.540055 GTCATTTGAAATGCCTAGAAAGACAAG 59.460 37.037 12.86 0.00 0.00 3.16
3669 4982 7.231317 AGTCATTTGAAATGCCTAGAAAGACAA 59.769 33.333 12.86 0.00 0.00 3.18
3670 4983 6.716628 AGTCATTTGAAATGCCTAGAAAGACA 59.283 34.615 12.86 0.00 0.00 3.41
3671 4984 7.150783 AGTCATTTGAAATGCCTAGAAAGAC 57.849 36.000 12.86 3.23 0.00 3.01
3672 4985 9.113838 GATAGTCATTTGAAATGCCTAGAAAGA 57.886 33.333 13.20 0.00 0.00 2.52
3673 4986 8.896744 TGATAGTCATTTGAAATGCCTAGAAAG 58.103 33.333 13.20 0.00 0.00 2.62
3674 4987 8.677300 GTGATAGTCATTTGAAATGCCTAGAAA 58.323 33.333 13.20 0.91 0.00 2.52
3675 4988 7.828717 TGTGATAGTCATTTGAAATGCCTAGAA 59.171 33.333 13.20 2.99 0.00 2.10
3676 4989 7.337938 TGTGATAGTCATTTGAAATGCCTAGA 58.662 34.615 13.20 1.78 0.00 2.43
3677 4990 7.558161 TGTGATAGTCATTTGAAATGCCTAG 57.442 36.000 13.20 0.00 0.00 3.02
3678 4991 9.056005 GTATGTGATAGTCATTTGAAATGCCTA 57.944 33.333 10.59 10.59 0.00 3.93
3679 4992 7.254898 CGTATGTGATAGTCATTTGAAATGCCT 60.255 37.037 12.86 9.73 0.00 4.75
3680 4993 6.852853 CGTATGTGATAGTCATTTGAAATGCC 59.147 38.462 12.86 1.61 0.00 4.40
3681 4994 6.852853 CCGTATGTGATAGTCATTTGAAATGC 59.147 38.462 12.86 8.33 0.00 3.56
3682 4995 8.141835 TCCGTATGTGATAGTCATTTGAAATG 57.858 34.615 11.54 11.54 0.00 2.32
3683 4996 8.777413 CATCCGTATGTGATAGTCATTTGAAAT 58.223 33.333 0.00 0.00 0.00 2.17
3684 4997 7.768582 ACATCCGTATGTGATAGTCATTTGAAA 59.231 33.333 0.00 0.00 44.79 2.69
3685 4998 7.272244 ACATCCGTATGTGATAGTCATTTGAA 58.728 34.615 0.00 0.00 44.79 2.69
3686 4999 6.816136 ACATCCGTATGTGATAGTCATTTGA 58.184 36.000 0.00 0.00 44.79 2.69
3687 5000 8.650714 CATACATCCGTATGTGATAGTCATTTG 58.349 37.037 3.56 0.00 46.70 2.32
3688 5001 8.763049 CATACATCCGTATGTGATAGTCATTT 57.237 34.615 3.56 0.00 46.70 2.32
3729 5042 6.812160 ACGGAGTAAAATGAGTGAATCTACAC 59.188 38.462 0.00 0.00 41.94 2.90
3730 5043 6.931838 ACGGAGTAAAATGAGTGAATCTACA 58.068 36.000 0.00 0.00 41.94 2.74
3746 5059 7.255555 TTCAACAAGTGACTACATACGGAGTAA 60.256 37.037 0.00 0.00 41.03 2.24
3747 5060 6.207221 TTCAACAAGTGACTACATACGGAGTA 59.793 38.462 0.00 0.00 41.66 2.59
3748 5061 5.010314 TTCAACAAGTGACTACATACGGAGT 59.990 40.000 0.00 0.00 39.84 3.85
3749 5062 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
3750 5063 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
3751 5064 6.534059 CATTTCAACAAGTGACTACATACGG 58.466 40.000 0.00 0.00 35.39 4.02
3752 5065 6.015504 GCATTTCAACAAGTGACTACATACG 58.984 40.000 0.00 0.00 35.39 3.06
3753 5066 6.149474 AGGCATTTCAACAAGTGACTACATAC 59.851 38.462 0.00 0.00 35.84 2.39
3754 5067 6.237901 AGGCATTTCAACAAGTGACTACATA 58.762 36.000 0.00 0.00 35.84 2.29
3755 5068 5.072741 AGGCATTTCAACAAGTGACTACAT 58.927 37.500 0.00 0.00 35.84 2.29
3756 5069 4.460263 AGGCATTTCAACAAGTGACTACA 58.540 39.130 0.00 0.00 35.84 2.74
3757 5070 5.932303 TCTAGGCATTTCAACAAGTGACTAC 59.068 40.000 0.00 0.00 38.51 2.73
3758 5071 6.109156 TCTAGGCATTTCAACAAGTGACTA 57.891 37.500 0.00 0.00 38.51 2.59
3759 5072 4.973168 TCTAGGCATTTCAACAAGTGACT 58.027 39.130 0.00 0.00 40.60 3.41
3760 5073 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
3761 5074 6.017109 GTCTTTCTAGGCATTTCAACAAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
3762 5075 6.145535 GTCTTTCTAGGCATTTCAACAAGTG 58.854 40.000 0.00 0.00 0.00 3.16
3763 5076 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
3764 5077 6.317789 TGTCTTTCTAGGCATTTCAACAAG 57.682 37.500 0.00 0.00 29.10 3.16
3765 5078 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
3766 5079 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
3767 5080 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
3768 5081 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
3769 5082 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
3771 5084 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
3772 5085 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
3773 5086 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
3774 5087 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
3775 5088 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
3776 5089 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
3777 5090 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
3778 5091 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
3779 5092 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
3780 5093 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
3781 5094 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
3782 5095 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
3783 5096 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
3784 5097 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
3785 5098 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
3786 5099 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
3787 5100 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
3788 5101 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
3789 5102 4.646492 TGTACTCCCTCCGTTCCTAAATAC 59.354 45.833 0.00 0.00 0.00 1.89
3790 5103 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
3791 5104 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
3792 5105 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
3793 5106 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
3794 5107 3.393426 AATGTACTCCCTCCGTTCCTA 57.607 47.619 0.00 0.00 0.00 2.94
3795 5108 2.236395 CAAATGTACTCCCTCCGTTCCT 59.764 50.000 0.00 0.00 0.00 3.36
3796 5109 2.235402 TCAAATGTACTCCCTCCGTTCC 59.765 50.000 0.00 0.00 0.00 3.62
3797 5110 3.604875 TCAAATGTACTCCCTCCGTTC 57.395 47.619 0.00 0.00 0.00 3.95
3798 5111 4.360951 TTTCAAATGTACTCCCTCCGTT 57.639 40.909 0.00 0.00 0.00 4.44
3799 5112 4.225267 AGATTTCAAATGTACTCCCTCCGT 59.775 41.667 0.00 0.00 0.00 4.69
3800 5113 4.770795 AGATTTCAAATGTACTCCCTCCG 58.229 43.478 0.00 0.00 0.00 4.63
3801 5114 7.125792 TCTAGATTTCAAATGTACTCCCTCC 57.874 40.000 0.00 0.00 0.00 4.30
3864 5178 5.997746 CAGTTGTAGAAGACCCAAGATGAAA 59.002 40.000 0.00 0.00 0.00 2.69
3903 5217 1.032114 GCAATTTGGGACGGAGGGAG 61.032 60.000 0.00 0.00 0.00 4.30
3904 5218 1.001393 GCAATTTGGGACGGAGGGA 60.001 57.895 0.00 0.00 0.00 4.20
3905 5219 0.611896 AAGCAATTTGGGACGGAGGG 60.612 55.000 0.00 0.00 0.00 4.30
3906 5220 0.527565 CAAGCAATTTGGGACGGAGG 59.472 55.000 0.00 0.00 32.95 4.30
3907 5221 1.200020 GACAAGCAATTTGGGACGGAG 59.800 52.381 0.00 0.00 41.25 4.63
3908 5222 1.243902 GACAAGCAATTTGGGACGGA 58.756 50.000 0.00 0.00 41.25 4.69
3909 5223 0.958091 TGACAAGCAATTTGGGACGG 59.042 50.000 0.00 0.00 41.25 4.79
3910 5224 1.336440 TGTGACAAGCAATTTGGGACG 59.664 47.619 0.00 0.00 41.25 4.79
3911 5225 3.451141 TTGTGACAAGCAATTTGGGAC 57.549 42.857 0.00 0.00 41.25 4.46
3912 5226 4.478206 TTTTGTGACAAGCAATTTGGGA 57.522 36.364 0.00 0.00 41.25 4.37
3913 5227 5.505985 CCATTTTTGTGACAAGCAATTTGGG 60.506 40.000 0.00 0.00 41.25 4.12
3914 5228 5.296283 TCCATTTTTGTGACAAGCAATTTGG 59.704 36.000 0.00 2.56 41.25 3.28
3915 5229 6.360844 TCCATTTTTGTGACAAGCAATTTG 57.639 33.333 0.00 0.00 42.68 2.32
3916 5230 8.149647 TCTATCCATTTTTGTGACAAGCAATTT 58.850 29.630 0.00 0.00 0.00 1.82
3917 5231 7.669427 TCTATCCATTTTTGTGACAAGCAATT 58.331 30.769 0.00 0.00 0.00 2.32
3918 5232 7.230849 TCTATCCATTTTTGTGACAAGCAAT 57.769 32.000 0.00 0.00 0.00 3.56
3919 5233 6.647334 TCTATCCATTTTTGTGACAAGCAA 57.353 33.333 0.00 0.00 0.00 3.91
3920 5234 6.647334 TTCTATCCATTTTTGTGACAAGCA 57.353 33.333 0.00 0.00 0.00 3.91
3921 5235 7.063780 CCATTTCTATCCATTTTTGTGACAAGC 59.936 37.037 0.00 0.00 0.00 4.01
3922 5236 8.306038 TCCATTTCTATCCATTTTTGTGACAAG 58.694 33.333 0.00 0.00 0.00 3.16
3923 5237 8.187913 TCCATTTCTATCCATTTTTGTGACAA 57.812 30.769 0.00 0.00 0.00 3.18
3924 5238 7.773489 TCCATTTCTATCCATTTTTGTGACA 57.227 32.000 0.00 0.00 0.00 3.58
3925 5239 8.253113 ACATCCATTTCTATCCATTTTTGTGAC 58.747 33.333 0.00 0.00 0.00 3.67
3926 5240 8.365060 ACATCCATTTCTATCCATTTTTGTGA 57.635 30.769 0.00 0.00 0.00 3.58
3934 5248 8.703743 GCTCTAGATACATCCATTTCTATCCAT 58.296 37.037 0.00 0.00 0.00 3.41
3935 5249 7.898100 AGCTCTAGATACATCCATTTCTATCCA 59.102 37.037 0.00 0.00 0.00 3.41
3936 5250 8.305046 AGCTCTAGATACATCCATTTCTATCC 57.695 38.462 0.00 0.00 0.00 2.59
3944 5258 9.862371 CGTATTTTTAGCTCTAGATACATCCAT 57.138 33.333 0.00 0.00 0.00 3.41
3945 5259 8.857098 ACGTATTTTTAGCTCTAGATACATCCA 58.143 33.333 0.00 0.00 0.00 3.41
3946 5260 9.344309 GACGTATTTTTAGCTCTAGATACATCC 57.656 37.037 0.00 0.00 0.00 3.51
3965 5279 9.197694 GCAGAAATGAATGTATCTAGACGTATT 57.802 33.333 0.00 0.00 0.00 1.89
3966 5280 7.539022 CGCAGAAATGAATGTATCTAGACGTAT 59.461 37.037 0.00 0.00 0.00 3.06
3967 5281 6.856426 CGCAGAAATGAATGTATCTAGACGTA 59.144 38.462 0.00 0.00 0.00 3.57
3968 5282 5.687730 CGCAGAAATGAATGTATCTAGACGT 59.312 40.000 0.00 0.00 0.00 4.34
3969 5283 5.915196 TCGCAGAAATGAATGTATCTAGACG 59.085 40.000 0.00 0.00 0.00 4.18
3970 5284 6.129326 CGTCGCAGAAATGAATGTATCTAGAC 60.129 42.308 0.00 0.00 39.69 2.59
3971 5285 5.915196 CGTCGCAGAAATGAATGTATCTAGA 59.085 40.000 0.00 0.00 39.69 2.43
3972 5286 5.915196 TCGTCGCAGAAATGAATGTATCTAG 59.085 40.000 0.00 0.00 39.69 2.43
3973 5287 5.827666 TCGTCGCAGAAATGAATGTATCTA 58.172 37.500 0.00 0.00 39.69 1.98
3974 5288 4.682787 TCGTCGCAGAAATGAATGTATCT 58.317 39.130 0.00 0.00 39.69 1.98
3975 5289 4.504461 ACTCGTCGCAGAAATGAATGTATC 59.496 41.667 0.00 0.00 39.69 2.24
3976 5290 4.433615 ACTCGTCGCAGAAATGAATGTAT 58.566 39.130 0.00 0.00 39.69 2.29
3977 5291 3.845178 ACTCGTCGCAGAAATGAATGTA 58.155 40.909 0.00 0.00 39.69 2.29
3978 5292 2.688507 ACTCGTCGCAGAAATGAATGT 58.311 42.857 0.00 0.00 39.69 2.71
3979 5293 4.840401 TTACTCGTCGCAGAAATGAATG 57.160 40.909 0.00 0.00 39.69 2.67
3980 5294 5.276395 CGAATTACTCGTCGCAGAAATGAAT 60.276 40.000 0.00 0.00 42.89 2.57
3981 5295 4.031314 CGAATTACTCGTCGCAGAAATGAA 59.969 41.667 0.00 0.00 42.89 2.57
3982 5296 3.546271 CGAATTACTCGTCGCAGAAATGA 59.454 43.478 0.00 0.00 42.89 2.57
3983 5297 3.301835 CCGAATTACTCGTCGCAGAAATG 60.302 47.826 0.00 0.00 46.65 2.32
3984 5298 2.858344 CCGAATTACTCGTCGCAGAAAT 59.142 45.455 0.00 0.00 46.65 2.17
3985 5299 2.256174 CCGAATTACTCGTCGCAGAAA 58.744 47.619 0.00 0.00 46.65 2.52
3986 5300 1.468565 CCCGAATTACTCGTCGCAGAA 60.469 52.381 0.00 0.00 46.65 3.02
3987 5301 0.099968 CCCGAATTACTCGTCGCAGA 59.900 55.000 0.00 0.00 46.65 4.26
3988 5302 0.099968 TCCCGAATTACTCGTCGCAG 59.900 55.000 0.00 0.00 46.65 5.18
3989 5303 0.179156 GTCCCGAATTACTCGTCGCA 60.179 55.000 0.00 0.00 46.65 5.10
3990 5304 1.198608 CGTCCCGAATTACTCGTCGC 61.199 60.000 0.00 0.00 46.65 5.19
3991 5305 0.590732 CCGTCCCGAATTACTCGTCG 60.591 60.000 0.00 0.00 46.65 5.12
3992 5306 0.734889 TCCGTCCCGAATTACTCGTC 59.265 55.000 0.00 0.00 46.65 4.20
3993 5307 0.737219 CTCCGTCCCGAATTACTCGT 59.263 55.000 0.00 0.00 46.65 4.18
3995 5309 0.388294 CCCTCCGTCCCGAATTACTC 59.612 60.000 0.00 0.00 0.00 2.59
3996 5310 0.032813 TCCCTCCGTCCCGAATTACT 60.033 55.000 0.00 0.00 0.00 2.24
3997 5311 0.388294 CTCCCTCCGTCCCGAATTAC 59.612 60.000 0.00 0.00 0.00 1.89
3998 5312 0.032813 ACTCCCTCCGTCCCGAATTA 60.033 55.000 0.00 0.00 0.00 1.40
3999 5313 0.032813 TACTCCCTCCGTCCCGAATT 60.033 55.000 0.00 0.00 0.00 2.17
4000 5314 0.187851 ATACTCCCTCCGTCCCGAAT 59.812 55.000 0.00 0.00 0.00 3.34
4001 5315 0.846015 TATACTCCCTCCGTCCCGAA 59.154 55.000 0.00 0.00 0.00 4.30
4002 5316 1.070604 ATATACTCCCTCCGTCCCGA 58.929 55.000 0.00 0.00 0.00 5.14
4003 5317 2.795231 TATATACTCCCTCCGTCCCG 57.205 55.000 0.00 0.00 0.00 5.14
4004 5318 4.892345 GGTATTATATACTCCCTCCGTCCC 59.108 50.000 0.00 0.00 0.00 4.46
4005 5319 4.578105 CGGTATTATATACTCCCTCCGTCC 59.422 50.000 0.00 0.00 0.00 4.79
4006 5320 4.036144 GCGGTATTATATACTCCCTCCGTC 59.964 50.000 0.00 0.00 38.07 4.79
4007 5321 3.950395 GCGGTATTATATACTCCCTCCGT 59.050 47.826 0.00 0.00 38.07 4.69
4008 5322 4.036498 CAGCGGTATTATATACTCCCTCCG 59.964 50.000 0.00 0.00 38.67 4.63
4009 5323 4.954826 ACAGCGGTATTATATACTCCCTCC 59.045 45.833 0.00 0.00 0.00 4.30
4010 5324 6.527057 AACAGCGGTATTATATACTCCCTC 57.473 41.667 0.00 0.00 0.00 4.30
4011 5325 6.930068 AAACAGCGGTATTATATACTCCCT 57.070 37.500 0.00 0.00 0.00 4.20
4012 5326 7.834803 AGTAAACAGCGGTATTATATACTCCC 58.165 38.462 0.00 0.00 0.00 4.30
4013 5327 8.517878 TGAGTAAACAGCGGTATTATATACTCC 58.482 37.037 11.42 0.00 37.17 3.85
4014 5328 9.903682 TTGAGTAAACAGCGGTATTATATACTC 57.096 33.333 8.37 8.37 38.01 2.59
4044 5358 5.887035 AGTTACACACCTCTAGAGTACCATC 59.113 44.000 18.42 2.72 0.00 3.51
4092 5413 5.187687 TCCCCAAAGACATATTTACGGAAC 58.812 41.667 0.00 0.00 0.00 3.62
4367 5690 8.304596 GGAAAAGGTAATAGAAAAGGGAAACTG 58.695 37.037 0.00 0.00 0.00 3.16
4428 5757 2.029290 ACAACGACCACTCCACTACATC 60.029 50.000 0.00 0.00 0.00 3.06
4497 5826 0.991920 TCCAACCAGAACCTGATCCC 59.008 55.000 0.00 0.00 32.44 3.85
4585 5914 2.626743 AGCAAATGGAGAATAGCATGCC 59.373 45.455 15.66 0.00 33.19 4.40
4620 5949 9.060347 CAGCCATGTTATGTTCTTATACATTCT 57.940 33.333 0.00 0.00 39.39 2.40
4685 6014 4.650588 AGCAGCTCAAGTATGATCTCTTCT 59.349 41.667 0.00 0.00 34.37 2.85
4706 6035 2.830370 CCCCTCAAATGCCGGAGC 60.830 66.667 5.05 0.00 40.48 4.70
4712 6041 0.899717 TGGCACTTCCCCTCAAATGC 60.900 55.000 0.00 0.00 0.00 3.56
4718 6047 0.110486 TTCTTGTGGCACTTCCCCTC 59.890 55.000 19.83 0.00 0.00 4.30
4763 6092 0.745845 CCTCCAACATCTCCCTTGCG 60.746 60.000 0.00 0.00 0.00 4.85
4965 6299 6.012658 TGGCACTGTATCAGTTTCAAATTC 57.987 37.500 0.00 0.00 42.59 2.17
5078 6412 1.202879 ACGTTGATTCCAAAGAGGCCA 60.203 47.619 5.01 0.00 35.71 5.36
5132 6466 1.227205 CGCAAACAGCCCAAAAGCA 60.227 52.632 0.00 0.00 41.38 3.91
5168 6502 1.318576 CGCCAACAAGGATTATCCCC 58.681 55.000 7.76 0.00 41.22 4.81
5174 6508 0.469144 ACCCAACGCCAACAAGGATT 60.469 50.000 0.00 0.00 41.22 3.01
5354 6688 1.227674 GCCTTCATCGCCCGAAGAT 60.228 57.895 9.13 0.00 42.05 2.40
5355 6689 1.040893 TAGCCTTCATCGCCCGAAGA 61.041 55.000 9.13 0.00 42.05 2.87
5506 6853 3.786368 TGAGGACACATGAACCAATCA 57.214 42.857 0.00 0.00 43.67 2.57
5604 6966 5.292834 TCAAATCGCATTGAACATCTCTCTC 59.707 40.000 0.90 0.00 36.42 3.20
5614 6976 6.741992 ATCTGTTACTCAAATCGCATTGAA 57.258 33.333 4.62 0.00 38.75 2.69
5625 6987 9.177608 CAAATAAGGATCCAATCTGTTACTCAA 57.822 33.333 15.82 0.00 0.00 3.02
5641 7003 7.119699 CAGTCACACACACATACAAATAAGGAT 59.880 37.037 0.00 0.00 0.00 3.24
5642 7004 6.426633 CAGTCACACACACATACAAATAAGGA 59.573 38.462 0.00 0.00 0.00 3.36
5643 7005 6.348458 CCAGTCACACACACATACAAATAAGG 60.348 42.308 0.00 0.00 0.00 2.69
5644 7006 6.204688 ACCAGTCACACACACATACAAATAAG 59.795 38.462 0.00 0.00 0.00 1.73
5647 7009 4.275689 CACCAGTCACACACACATACAAAT 59.724 41.667 0.00 0.00 0.00 2.32
5651 7013 2.833794 ACACCAGTCACACACACATAC 58.166 47.619 0.00 0.00 0.00 2.39
5653 7015 2.016318 CAACACCAGTCACACACACAT 58.984 47.619 0.00 0.00 0.00 3.21
5704 7092 8.684520 GGTAGTGACATAGACTAGTAACATGTT 58.315 37.037 16.68 16.68 30.25 2.71
5740 7128 6.614694 TGTTACCACACATATGTTACTCCT 57.385 37.500 5.37 0.00 36.72 3.69
5785 7175 8.874156 ACATATCAAGGCAAGATCTGTCTATAA 58.126 33.333 0.00 0.00 39.84 0.98
5794 7184 5.530171 ACATCACACATATCAAGGCAAGATC 59.470 40.000 0.00 0.00 0.00 2.75
5864 7259 7.094508 TGTGTCAAGCAATAAGTGAAGAAAA 57.905 32.000 0.00 0.00 0.00 2.29
5936 7337 9.650714 TCTTAGGCATTAAACTACCTATAGTGA 57.349 33.333 0.00 0.00 41.00 3.41
5941 7342 9.657728 ACTAGTCTTAGGCATTAAACTACCTAT 57.342 33.333 0.00 0.00 34.80 2.57
5943 7344 7.618512 TGACTAGTCTTAGGCATTAAACTACCT 59.381 37.037 23.01 0.00 40.06 3.08
5955 7356 5.810080 ACCCATTATGACTAGTCTTAGGC 57.190 43.478 23.01 0.00 35.31 3.93
5956 7357 9.584008 TTACTACCCATTATGACTAGTCTTAGG 57.416 37.037 23.01 18.55 0.00 2.69
6000 7412 5.836898 CCCACTGTGGAGGTAGTAACATATA 59.163 44.000 27.94 0.00 40.96 0.86
6066 7491 7.588143 ATCAAGAAAAGATGAGTCTACAACG 57.412 36.000 0.00 0.00 33.30 4.10
6122 7557 4.564782 ATGAAGAAAGAGAGGCATGTGA 57.435 40.909 0.00 0.00 0.00 3.58
6210 7650 4.400251 TGAGTTACCATTAGACTACCCACG 59.600 45.833 0.00 0.00 0.00 4.94
6278 7718 1.898574 CAACCGTCCCAAGCTGCTT 60.899 57.895 9.53 9.53 0.00 3.91
6280 7720 3.365265 CCAACCGTCCCAAGCTGC 61.365 66.667 0.00 0.00 0.00 5.25
6281 7721 1.528309 AACCAACCGTCCCAAGCTG 60.528 57.895 0.00 0.00 0.00 4.24
6285 7725 2.519780 GGCAACCAACCGTCCCAA 60.520 61.111 0.00 0.00 0.00 4.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.