Multiple sequence alignment - TraesCS3D01G241500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G241500 chr3D 100.000 4597 0 0 1 4597 335626830 335631426 0.000000e+00 8490.0
1 TraesCS3D01G241500 chr3D 94.605 519 27 1 3998 4516 335659089 335659606 0.000000e+00 802.0
2 TraesCS3D01G241500 chr3D 95.584 317 14 0 4000 4316 335662765 335663081 4.100000e-140 508.0
3 TraesCS3D01G241500 chr3D 98.113 53 1 0 4545 4597 335659608 335659660 4.900000e-15 93.5
4 TraesCS3D01G241500 chr3A 94.320 2852 93 23 794 3614 453600589 453603402 0.000000e+00 4305.0
5 TraesCS3D01G241500 chr3A 87.615 436 41 12 20 447 453599117 453599547 1.150000e-135 494.0
6 TraesCS3D01G241500 chr3A 90.336 238 10 5 3716 3945 453603402 453603634 2.690000e-77 300.0
7 TraesCS3D01G241500 chr3B 94.460 2473 84 19 822 3257 434047530 434049986 0.000000e+00 3759.0
8 TraesCS3D01G241500 chr3B 96.962 395 10 1 3220 3614 434049985 434050377 0.000000e+00 662.0
9 TraesCS3D01G241500 chr3B 87.900 281 17 8 3716 3987 434050377 434050649 9.600000e-82 315.0
10 TraesCS3D01G241500 chr3B 93.333 45 3 0 2238 2282 820053732 820053688 2.970000e-07 67.6
11 TraesCS3D01G241500 chr6A 80.316 950 113 44 2204 3122 554458586 554457680 0.000000e+00 651.0
12 TraesCS3D01G241500 chr6A 82.000 400 49 14 1780 2163 554459172 554458780 7.420000e-83 318.0
13 TraesCS3D01G241500 chr6A 87.678 211 19 6 3406 3611 554457519 554457311 5.940000e-59 239.0
14 TraesCS3D01G241500 chr6A 82.533 229 27 7 3406 3628 596364037 596364258 6.070000e-44 189.0
15 TraesCS3D01G241500 chr6A 86.022 93 8 5 2943 3033 596363679 596363768 1.360000e-15 95.3
16 TraesCS3D01G241500 chr6D 80.191 944 117 43 2204 3122 408650292 408649394 1.080000e-180 643.0
17 TraesCS3D01G241500 chr6D 79.919 493 66 20 1812 2280 450820356 450820839 9.530000e-87 331.0
18 TraesCS3D01G241500 chr6D 81.796 401 48 17 1780 2163 408650880 408650488 3.450000e-81 313.0
19 TraesCS3D01G241500 chr6D 90.226 133 11 2 3480 3611 408649171 408649040 6.110000e-39 172.0
20 TraesCS3D01G241500 chr6D 90.805 87 6 2 3632 3718 114587809 114587725 1.050000e-21 115.0
21 TraesCS3D01G241500 chr4A 88.781 517 48 3 3998 4513 623332467 623332974 3.910000e-175 625.0
22 TraesCS3D01G241500 chr4A 89.313 262 22 4 494 752 572708688 572708430 1.600000e-84 324.0
23 TraesCS3D01G241500 chr4A 100.000 56 0 0 4542 4597 623332976 623333031 2.260000e-18 104.0
24 TraesCS3D01G241500 chr6B 78.875 942 116 49 2204 3122 613110903 613110022 1.120000e-155 560.0
25 TraesCS3D01G241500 chr6B 82.338 402 46 21 1780 2163 613111492 613111098 4.440000e-85 326.0
26 TraesCS3D01G241500 chr6B 88.364 275 24 6 482 752 17987995 17988265 1.600000e-84 324.0
27 TraesCS3D01G241500 chr6B 81.288 326 48 13 3998 4316 214884162 214883843 7.630000e-63 252.0
28 TraesCS3D01G241500 chr6B 89.394 198 16 4 3406 3599 613109861 613109665 1.280000e-60 244.0
29 TraesCS3D01G241500 chr6B 93.333 45 3 0 2238 2282 613111066 613111022 2.970000e-07 67.6
30 TraesCS3D01G241500 chr2A 90.076 262 20 4 494 752 155766741 155766483 7.370000e-88 335.0
31 TraesCS3D01G241500 chr2A 89.811 265 21 4 494 755 497695872 497695611 7.370000e-88 335.0
32 TraesCS3D01G241500 chr2A 88.603 272 25 3 484 752 653037668 653037400 4.440000e-85 326.0
33 TraesCS3D01G241500 chr2A 79.221 308 39 19 3994 4284 602719629 602719330 1.690000e-44 191.0
34 TraesCS3D01G241500 chr5A 88.930 271 24 4 485 752 601156047 601156314 3.430000e-86 329.0
35 TraesCS3D01G241500 chr2B 89.695 262 21 4 494 752 776250730 776250472 3.430000e-86 329.0
36 TraesCS3D01G241500 chr7B 89.313 262 22 4 494 752 633031148 633030890 1.600000e-84 324.0
37 TraesCS3D01G241500 chr7B 86.853 251 25 7 3994 4242 263146275 263146519 1.630000e-69 274.0
38 TraesCS3D01G241500 chr7B 91.765 85 5 2 3636 3718 829839 829755 2.910000e-22 117.0
39 TraesCS3D01G241500 chr7B 73.516 219 38 13 4124 4333 115296672 115296465 1.070000e-06 65.8
40 TraesCS3D01G241500 chr7A 89.313 262 22 4 494 752 243357034 243356776 1.600000e-84 324.0
41 TraesCS3D01G241500 chr4D 94.595 74 4 0 3645 3718 218516283 218516210 1.050000e-21 115.0
42 TraesCS3D01G241500 chr4B 91.463 82 7 0 3638 3719 101712058 101712139 3.760000e-21 113.0
43 TraesCS3D01G241500 chr4B 89.412 85 8 1 3635 3718 252326132 252326048 6.290000e-19 106.0
44 TraesCS3D01G241500 chr1A 94.595 74 3 1 3645 3718 430590425 430590353 3.760000e-21 113.0
45 TraesCS3D01G241500 chr1A 92.405 79 5 1 3641 3718 241320012 241319934 1.350000e-20 111.0
46 TraesCS3D01G241500 chr2D 88.172 93 11 0 3626 3718 296173779 296173687 1.350000e-20 111.0
47 TraesCS3D01G241500 chr2D 92.308 78 6 0 3641 3718 612700426 612700349 1.350000e-20 111.0
48 TraesCS3D01G241500 chr5D 94.872 39 2 0 2238 2276 322773998 322773960 1.380000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G241500 chr3D 335626830 335631426 4596 False 8490.000000 8490 100.000000 1 4597 1 chr3D.!!$F1 4596
1 TraesCS3D01G241500 chr3D 335659089 335663081 3992 False 467.833333 802 96.100667 3998 4597 3 chr3D.!!$F2 599
2 TraesCS3D01G241500 chr3A 453599117 453603634 4517 False 1699.666667 4305 90.757000 20 3945 3 chr3A.!!$F1 3925
3 TraesCS3D01G241500 chr3B 434047530 434050649 3119 False 1578.666667 3759 93.107333 822 3987 3 chr3B.!!$F1 3165
4 TraesCS3D01G241500 chr6A 554457311 554459172 1861 True 402.666667 651 83.331333 1780 3611 3 chr6A.!!$R1 1831
5 TraesCS3D01G241500 chr6D 408649040 408650880 1840 True 376.000000 643 84.071000 1780 3611 3 chr6D.!!$R2 1831
6 TraesCS3D01G241500 chr4A 623332467 623333031 564 False 364.500000 625 94.390500 3998 4597 2 chr4A.!!$F1 599
7 TraesCS3D01G241500 chr6B 613109665 613111492 1827 True 299.400000 560 85.985000 1780 3599 4 chr6B.!!$R2 1819

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
697 1660 0.033504 CAGGGTTAGAGTGTGCGTGT 59.966 55.0 0.00 0.0 0.00 4.49 F
707 1670 0.041663 GTGTGCGTGTGTGCGTTTAT 60.042 50.0 0.00 0.0 37.81 1.40 F
1154 2143 0.105964 TCGCACCCATTTATCCTCCG 59.894 55.0 0.00 0.0 0.00 4.63 F
1441 2443 0.322008 GTTTGAGGCCAGGTGAGGAG 60.322 60.0 5.01 0.0 0.00 3.69 F
1733 2736 2.482490 CCTGCCCTTGATTAATGCTTGC 60.482 50.0 0.00 0.0 0.00 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1505 2507 0.253044 TGCCCTCAATGCACTCTACC 59.747 55.000 0.00 0.0 32.85 3.18 R
2202 3231 1.478916 GAGGTCTGTAGGACAGGAAGC 59.521 57.143 6.77 0.0 45.94 3.86 R
2399 3629 3.858696 TTAGGAGGTCCCAGGTTTAGA 57.141 47.619 0.00 0.0 37.41 2.10 R
2717 3951 4.215613 GGTGGTGACCTGAGAAAACATAAC 59.784 45.833 2.11 0.0 39.47 1.89 R
3616 4937 1.340889 GAGCATGCAAAACAAGGGTCA 59.659 47.619 21.98 0.0 35.44 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
120 122 4.299316 GCGGTCATGATTCGCGGC 62.299 66.667 23.51 12.50 40.06 6.53
179 181 2.718073 GCCACGACCTCCCGTACAT 61.718 63.158 0.00 0.00 41.29 2.29
181 183 1.518572 CACGACCTCCCGTACATGC 60.519 63.158 0.00 0.00 41.29 4.06
190 192 4.635925 CGTACATGCCGGAGCTAG 57.364 61.111 5.05 0.00 40.80 3.42
193 195 0.105039 GTACATGCCGGAGCTAGCTT 59.895 55.000 20.42 2.24 40.80 3.74
194 196 0.104855 TACATGCCGGAGCTAGCTTG 59.895 55.000 20.42 14.30 40.80 4.01
195 197 2.203126 ATGCCGGAGCTAGCTTGC 60.203 61.111 20.42 20.96 40.80 4.01
217 219 2.829003 CCTAGAGCACCGCCTCGA 60.829 66.667 0.00 0.00 36.95 4.04
219 221 3.477224 CTAGAGCACCGCCTCGAGC 62.477 68.421 6.99 1.53 36.95 5.03
243 245 1.900351 CTCTCACCTCCAATGCCGA 59.100 57.895 0.00 0.00 0.00 5.54
248 250 4.473520 CCTCCAATGCCGAGGCGT 62.474 66.667 9.78 6.29 45.51 5.68
249 251 3.197790 CTCCAATGCCGAGGCGTG 61.198 66.667 9.88 9.83 45.51 5.34
292 296 1.002624 CCTCCCGCCAGCTTTACAA 60.003 57.895 0.00 0.00 0.00 2.41
313 317 2.043227 GTTGGTCTAGGATGGAGGAGG 58.957 57.143 0.00 0.00 0.00 4.30
314 318 1.620515 TGGTCTAGGATGGAGGAGGA 58.379 55.000 0.00 0.00 0.00 3.71
315 319 1.501170 TGGTCTAGGATGGAGGAGGAG 59.499 57.143 0.00 0.00 0.00 3.69
317 321 2.717515 GGTCTAGGATGGAGGAGGAGTA 59.282 54.545 0.00 0.00 0.00 2.59
322 326 3.135279 AGGATGGAGGAGGAGTAAGAGA 58.865 50.000 0.00 0.00 0.00 3.10
332 336 7.354751 AGGAGGAGTAAGAGAAATGATACAC 57.645 40.000 0.00 0.00 0.00 2.90
336 340 8.546083 AGGAGTAAGAGAAATGATACACTGAT 57.454 34.615 0.00 0.00 0.00 2.90
340 344 8.976353 AGTAAGAGAAATGATACACTGATGAGT 58.024 33.333 0.00 0.00 0.00 3.41
354 358 5.898120 ACTGATGAGTGAGCCCTATATAGT 58.102 41.667 8.92 0.00 0.00 2.12
356 360 6.784969 ACTGATGAGTGAGCCCTATATAGTTT 59.215 38.462 8.92 0.00 0.00 2.66
357 361 7.950684 ACTGATGAGTGAGCCCTATATAGTTTA 59.049 37.037 8.92 0.00 0.00 2.01
358 362 8.721133 TGATGAGTGAGCCCTATATAGTTTAA 57.279 34.615 8.92 0.00 0.00 1.52
359 363 8.585881 TGATGAGTGAGCCCTATATAGTTTAAC 58.414 37.037 8.92 1.40 0.00 2.01
394 402 3.384467 CGGGTATGAATTTTCCTTGGCAT 59.616 43.478 0.00 0.00 0.00 4.40
405 413 1.350684 TCCTTGGCATGTTAGCACTGA 59.649 47.619 0.00 0.00 35.83 3.41
425 433 3.138839 TGACAATGGACCCATGCTATCAT 59.861 43.478 1.76 0.00 36.68 2.45
451 1414 1.580439 CGTCAAAACGCAGTCAATCG 58.420 50.000 0.00 0.00 45.00 3.34
454 1417 2.475111 GTCAAAACGCAGTCAATCGAGA 59.525 45.455 0.00 0.00 45.00 4.04
469 1432 6.524586 GTCAATCGAGATTTTAGTGCTTTTGG 59.475 38.462 0.00 0.00 0.00 3.28
488 1451 6.521151 TTTGGCAAACAAAAATCAATGGTT 57.479 29.167 8.93 0.00 45.59 3.67
489 1452 7.630242 TTTGGCAAACAAAAATCAATGGTTA 57.370 28.000 8.93 0.00 45.59 2.85
490 1453 7.630242 TTGGCAAACAAAAATCAATGGTTAA 57.370 28.000 0.00 0.00 35.79 2.01
491 1454 7.630242 TGGCAAACAAAAATCAATGGTTAAA 57.370 28.000 0.00 0.00 0.00 1.52
492 1455 7.701445 TGGCAAACAAAAATCAATGGTTAAAG 58.299 30.769 0.00 0.00 0.00 1.85
493 1456 7.138081 GGCAAACAAAAATCAATGGTTAAAGG 58.862 34.615 0.00 0.00 0.00 3.11
494 1457 7.138081 GCAAACAAAAATCAATGGTTAAAGGG 58.862 34.615 0.00 0.00 0.00 3.95
495 1458 7.012799 GCAAACAAAAATCAATGGTTAAAGGGA 59.987 33.333 0.00 0.00 0.00 4.20
496 1459 8.341903 CAAACAAAAATCAATGGTTAAAGGGAC 58.658 33.333 0.00 0.00 0.00 4.46
497 1460 7.130681 ACAAAAATCAATGGTTAAAGGGACA 57.869 32.000 0.00 0.00 0.00 4.02
498 1461 7.216494 ACAAAAATCAATGGTTAAAGGGACAG 58.784 34.615 0.00 0.00 0.00 3.51
499 1462 6.994421 AAAATCAATGGTTAAAGGGACAGT 57.006 33.333 0.00 0.00 0.00 3.55
500 1463 5.982890 AATCAATGGTTAAAGGGACAGTG 57.017 39.130 0.00 0.00 0.00 3.66
501 1464 3.761897 TCAATGGTTAAAGGGACAGTGG 58.238 45.455 0.00 0.00 30.69 4.00
502 1465 3.139397 TCAATGGTTAAAGGGACAGTGGT 59.861 43.478 0.00 0.00 30.69 4.16
503 1466 4.351407 TCAATGGTTAAAGGGACAGTGGTA 59.649 41.667 0.00 0.00 30.69 3.25
504 1467 5.014755 TCAATGGTTAAAGGGACAGTGGTAT 59.985 40.000 0.00 0.00 30.69 2.73
505 1468 4.563140 TGGTTAAAGGGACAGTGGTATC 57.437 45.455 0.00 0.00 0.00 2.24
506 1469 3.264964 TGGTTAAAGGGACAGTGGTATCC 59.735 47.826 0.00 0.00 0.00 2.59
507 1470 3.522343 GGTTAAAGGGACAGTGGTATCCT 59.478 47.826 0.00 0.00 35.15 3.24
508 1471 4.383880 GGTTAAAGGGACAGTGGTATCCTC 60.384 50.000 0.00 0.00 35.15 3.71
509 1472 2.642171 AAGGGACAGTGGTATCCTCA 57.358 50.000 0.00 0.00 35.15 3.86
510 1473 2.166907 AGGGACAGTGGTATCCTCAG 57.833 55.000 0.00 0.00 35.15 3.35
511 1474 0.466124 GGGACAGTGGTATCCTCAGC 59.534 60.000 0.00 0.00 35.15 4.26
512 1475 0.466124 GGACAGTGGTATCCTCAGCC 59.534 60.000 0.00 0.00 31.75 4.85
513 1476 0.466124 GACAGTGGTATCCTCAGCCC 59.534 60.000 0.00 0.00 0.00 5.19
514 1477 0.252696 ACAGTGGTATCCTCAGCCCA 60.253 55.000 0.00 0.00 0.00 5.36
515 1478 0.179000 CAGTGGTATCCTCAGCCCAC 59.821 60.000 0.00 0.00 46.17 4.61
516 1479 0.983378 AGTGGTATCCTCAGCCCACC 60.983 60.000 4.15 0.00 46.84 4.61
517 1480 1.082019 TGGTATCCTCAGCCCACCA 59.918 57.895 0.00 0.00 36.94 4.17
518 1481 0.982852 TGGTATCCTCAGCCCACCAG 60.983 60.000 0.00 0.00 34.40 4.00
519 1482 1.700042 GGTATCCTCAGCCCACCAGG 61.700 65.000 0.00 0.00 39.47 4.45
536 1499 4.181051 GGTTCAAACCCTGCTGCT 57.819 55.556 0.00 0.00 43.43 4.24
537 1500 1.959848 GGTTCAAACCCTGCTGCTC 59.040 57.895 0.00 0.00 43.43 4.26
538 1501 1.576421 GTTCAAACCCTGCTGCTCG 59.424 57.895 0.00 0.00 0.00 5.03
539 1502 2.260869 TTCAAACCCTGCTGCTCGC 61.261 57.895 0.00 0.00 39.77 5.03
550 1513 1.672363 TGCTGCTCGCATTATTTCTGG 59.328 47.619 0.00 0.00 45.47 3.86
551 1514 1.942657 GCTGCTCGCATTATTTCTGGA 59.057 47.619 0.00 0.00 38.92 3.86
552 1515 2.551459 GCTGCTCGCATTATTTCTGGAT 59.449 45.455 0.00 0.00 38.92 3.41
553 1516 3.004106 GCTGCTCGCATTATTTCTGGATT 59.996 43.478 0.00 0.00 38.92 3.01
554 1517 4.498682 GCTGCTCGCATTATTTCTGGATTT 60.499 41.667 0.00 0.00 38.92 2.17
555 1518 5.277974 GCTGCTCGCATTATTTCTGGATTTA 60.278 40.000 0.00 0.00 38.92 1.40
556 1519 6.569226 GCTGCTCGCATTATTTCTGGATTTAT 60.569 38.462 0.00 0.00 38.92 1.40
557 1520 7.275888 TGCTCGCATTATTTCTGGATTTATT 57.724 32.000 0.00 0.00 0.00 1.40
558 1521 7.715657 TGCTCGCATTATTTCTGGATTTATTT 58.284 30.769 0.00 0.00 0.00 1.40
559 1522 7.862372 TGCTCGCATTATTTCTGGATTTATTTC 59.138 33.333 0.00 0.00 0.00 2.17
560 1523 7.862372 GCTCGCATTATTTCTGGATTTATTTCA 59.138 33.333 0.00 0.00 0.00 2.69
561 1524 9.390795 CTCGCATTATTTCTGGATTTATTTCAG 57.609 33.333 0.00 0.00 0.00 3.02
562 1525 8.352201 TCGCATTATTTCTGGATTTATTTCAGG 58.648 33.333 0.00 0.00 0.00 3.86
563 1526 8.352201 CGCATTATTTCTGGATTTATTTCAGGA 58.648 33.333 0.00 0.00 0.00 3.86
569 1532 9.895138 ATTTCTGGATTTATTTCAGGATTTTGG 57.105 29.630 0.00 0.00 0.00 3.28
570 1533 7.422465 TCTGGATTTATTTCAGGATTTTGGG 57.578 36.000 0.00 0.00 0.00 4.12
571 1534 5.988287 TGGATTTATTTCAGGATTTTGGGC 58.012 37.500 0.00 0.00 0.00 5.36
572 1535 5.049828 GGATTTATTTCAGGATTTTGGGCG 58.950 41.667 0.00 0.00 0.00 6.13
573 1536 5.163457 GGATTTATTTCAGGATTTTGGGCGA 60.163 40.000 0.00 0.00 0.00 5.54
574 1537 4.712122 TTATTTCAGGATTTTGGGCGAC 57.288 40.909 0.00 0.00 0.00 5.19
575 1538 0.878416 TTTCAGGATTTTGGGCGACG 59.122 50.000 0.00 0.00 0.00 5.12
576 1539 1.582610 TTCAGGATTTTGGGCGACGC 61.583 55.000 12.43 12.43 0.00 5.19
577 1540 3.124921 AGGATTTTGGGCGACGCG 61.125 61.111 14.61 3.53 0.00 6.01
588 1551 2.765785 CGACGCGCTTTCAGTGAG 59.234 61.111 5.73 0.00 0.00 3.51
589 1552 2.720758 CGACGCGCTTTCAGTGAGG 61.721 63.158 5.73 0.00 29.54 3.86
590 1553 1.372997 GACGCGCTTTCAGTGAGGA 60.373 57.895 5.73 0.00 29.54 3.71
591 1554 1.347817 GACGCGCTTTCAGTGAGGAG 61.348 60.000 5.73 0.00 29.54 3.69
592 1555 1.080501 CGCGCTTTCAGTGAGGAGA 60.081 57.895 5.56 0.00 0.00 3.71
593 1556 1.347817 CGCGCTTTCAGTGAGGAGAC 61.348 60.000 5.56 1.25 0.00 3.36
594 1557 0.319900 GCGCTTTCAGTGAGGAGACA 60.320 55.000 0.00 0.00 0.00 3.41
595 1558 1.674221 GCGCTTTCAGTGAGGAGACAT 60.674 52.381 0.00 0.00 0.00 3.06
596 1559 2.693069 CGCTTTCAGTGAGGAGACATT 58.307 47.619 9.16 0.00 0.00 2.71
597 1560 2.670414 CGCTTTCAGTGAGGAGACATTC 59.330 50.000 9.16 0.00 0.00 2.67
605 1568 4.808649 GGAGACATTCCCGTCGAC 57.191 61.111 5.18 5.18 40.37 4.20
606 1569 1.226603 GGAGACATTCCCGTCGACG 60.227 63.158 30.33 30.33 40.37 5.12
607 1570 1.651240 GGAGACATTCCCGTCGACGA 61.651 60.000 37.65 19.79 40.37 4.20
608 1571 0.522915 GAGACATTCCCGTCGACGAC 60.523 60.000 37.65 18.04 43.02 4.34
620 1583 3.885440 GACGACGAGGCGATTACG 58.115 61.111 4.95 0.00 42.93 3.18
621 1584 1.349627 GACGACGAGGCGATTACGA 59.650 57.895 4.95 0.00 42.66 3.43
622 1585 0.041488 GACGACGAGGCGATTACGAT 60.041 55.000 4.95 0.00 42.66 3.73
623 1586 0.316772 ACGACGAGGCGATTACGATG 60.317 55.000 4.95 0.00 42.66 3.84
624 1587 0.041576 CGACGAGGCGATTACGATGA 60.042 55.000 0.00 0.00 42.66 2.92
625 1588 1.396644 GACGAGGCGATTACGATGAC 58.603 55.000 0.00 0.00 42.66 3.06
626 1589 1.002684 GACGAGGCGATTACGATGACT 60.003 52.381 0.00 0.00 42.66 3.41
627 1590 1.404391 ACGAGGCGATTACGATGACTT 59.596 47.619 0.00 0.00 42.66 3.01
628 1591 2.044860 CGAGGCGATTACGATGACTTC 58.955 52.381 0.00 0.00 42.66 3.01
643 1606 6.861158 CGATGACTTCGTAAATCTCAAGATG 58.139 40.000 2.72 0.00 43.01 2.90
644 1607 6.693113 CGATGACTTCGTAAATCTCAAGATGA 59.307 38.462 2.72 0.00 43.01 2.92
645 1608 7.380870 CGATGACTTCGTAAATCTCAAGATGAT 59.619 37.037 2.72 0.00 43.01 2.45
646 1609 9.684448 GATGACTTCGTAAATCTCAAGATGATA 57.316 33.333 0.00 0.00 34.49 2.15
648 1611 9.468532 TGACTTCGTAAATCTCAAGATGATATG 57.531 33.333 0.00 0.00 34.49 1.78
649 1612 9.469807 GACTTCGTAAATCTCAAGATGATATGT 57.530 33.333 0.00 0.00 34.49 2.29
650 1613 9.469807 ACTTCGTAAATCTCAAGATGATATGTC 57.530 33.333 0.00 0.00 34.49 3.06
651 1614 8.507470 TTCGTAAATCTCAAGATGATATGTCG 57.493 34.615 0.00 0.00 34.49 4.35
652 1615 7.084486 TCGTAAATCTCAAGATGATATGTCGG 58.916 38.462 0.00 0.00 34.49 4.79
653 1616 6.183360 CGTAAATCTCAAGATGATATGTCGGC 60.183 42.308 0.00 0.00 34.49 5.54
654 1617 5.480642 AATCTCAAGATGATATGTCGGCT 57.519 39.130 0.00 0.00 34.49 5.52
655 1618 4.511617 TCTCAAGATGATATGTCGGCTC 57.488 45.455 0.00 0.00 0.00 4.70
656 1619 3.891366 TCTCAAGATGATATGTCGGCTCA 59.109 43.478 0.00 0.00 0.00 4.26
657 1620 4.022503 TCTCAAGATGATATGTCGGCTCAG 60.023 45.833 0.00 0.00 0.00 3.35
658 1621 3.638627 TCAAGATGATATGTCGGCTCAGT 59.361 43.478 0.00 0.00 0.00 3.41
659 1622 3.932545 AGATGATATGTCGGCTCAGTC 57.067 47.619 0.00 0.00 0.00 3.51
660 1623 3.495331 AGATGATATGTCGGCTCAGTCT 58.505 45.455 0.00 0.00 0.00 3.24
661 1624 3.505680 AGATGATATGTCGGCTCAGTCTC 59.494 47.826 0.00 0.00 0.00 3.36
662 1625 2.937519 TGATATGTCGGCTCAGTCTCT 58.062 47.619 0.00 0.00 0.00 3.10
663 1626 2.881513 TGATATGTCGGCTCAGTCTCTC 59.118 50.000 0.00 0.00 0.00 3.20
664 1627 1.300481 TATGTCGGCTCAGTCTCTCG 58.700 55.000 0.00 0.00 0.00 4.04
665 1628 0.393132 ATGTCGGCTCAGTCTCTCGA 60.393 55.000 0.00 0.00 0.00 4.04
666 1629 0.605589 TGTCGGCTCAGTCTCTCGAA 60.606 55.000 0.00 0.00 0.00 3.71
667 1630 0.098025 GTCGGCTCAGTCTCTCGAAG 59.902 60.000 0.00 0.00 0.00 3.79
668 1631 0.036294 TCGGCTCAGTCTCTCGAAGA 60.036 55.000 0.00 0.00 0.00 2.87
669 1632 1.021202 CGGCTCAGTCTCTCGAAGAT 58.979 55.000 0.00 0.00 36.11 2.40
670 1633 1.268488 CGGCTCAGTCTCTCGAAGATG 60.268 57.143 0.00 0.00 36.11 2.90
671 1634 1.535860 GGCTCAGTCTCTCGAAGATGC 60.536 57.143 0.00 0.00 36.11 3.91
672 1635 1.405105 GCTCAGTCTCTCGAAGATGCT 59.595 52.381 0.00 0.00 36.11 3.79
673 1636 2.541588 GCTCAGTCTCTCGAAGATGCTC 60.542 54.545 0.00 0.00 36.11 4.26
674 1637 2.682352 CTCAGTCTCTCGAAGATGCTCA 59.318 50.000 0.00 0.00 36.11 4.26
675 1638 3.286353 TCAGTCTCTCGAAGATGCTCAT 58.714 45.455 0.00 0.00 36.11 2.90
676 1639 4.455606 TCAGTCTCTCGAAGATGCTCATA 58.544 43.478 0.00 0.00 36.11 2.15
677 1640 4.514816 TCAGTCTCTCGAAGATGCTCATAG 59.485 45.833 0.00 0.00 36.11 2.23
678 1641 3.253188 AGTCTCTCGAAGATGCTCATAGC 59.747 47.826 0.00 0.00 42.82 2.97
690 1653 3.104843 GCTCATAGCAGGGTTAGAGTG 57.895 52.381 0.00 0.00 41.89 3.51
691 1654 2.432510 GCTCATAGCAGGGTTAGAGTGT 59.567 50.000 0.00 0.00 41.89 3.55
692 1655 3.739519 GCTCATAGCAGGGTTAGAGTGTG 60.740 52.174 0.00 0.00 41.89 3.82
693 1656 2.168521 TCATAGCAGGGTTAGAGTGTGC 59.831 50.000 0.00 0.00 0.00 4.57
694 1657 0.530744 TAGCAGGGTTAGAGTGTGCG 59.469 55.000 0.00 0.00 39.19 5.34
695 1658 1.004918 GCAGGGTTAGAGTGTGCGT 60.005 57.895 0.00 0.00 0.00 5.24
696 1659 1.291877 GCAGGGTTAGAGTGTGCGTG 61.292 60.000 0.00 0.00 0.00 5.34
697 1660 0.033504 CAGGGTTAGAGTGTGCGTGT 59.966 55.000 0.00 0.00 0.00 4.49
698 1661 0.033504 AGGGTTAGAGTGTGCGTGTG 59.966 55.000 0.00 0.00 0.00 3.82
699 1662 0.249741 GGGTTAGAGTGTGCGTGTGT 60.250 55.000 0.00 0.00 0.00 3.72
700 1663 0.859232 GGTTAGAGTGTGCGTGTGTG 59.141 55.000 0.00 0.00 0.00 3.82
701 1664 0.232303 GTTAGAGTGTGCGTGTGTGC 59.768 55.000 0.00 0.00 0.00 4.57
702 1665 1.212455 TTAGAGTGTGCGTGTGTGCG 61.212 55.000 0.00 0.00 37.81 5.34
703 1666 2.344521 TAGAGTGTGCGTGTGTGCGT 62.345 55.000 0.00 0.00 37.81 5.24
704 1667 2.808958 GAGTGTGCGTGTGTGCGTT 61.809 57.895 0.00 0.00 37.81 4.84
705 1668 2.099446 GTGTGCGTGTGTGCGTTT 59.901 55.556 0.00 0.00 37.81 3.60
706 1669 1.084935 AGTGTGCGTGTGTGCGTTTA 61.085 50.000 0.00 0.00 37.81 2.01
707 1670 0.041663 GTGTGCGTGTGTGCGTTTAT 60.042 50.000 0.00 0.00 37.81 1.40
708 1671 1.192757 GTGTGCGTGTGTGCGTTTATA 59.807 47.619 0.00 0.00 37.81 0.98
709 1672 1.457683 TGTGCGTGTGTGCGTTTATAG 59.542 47.619 0.00 0.00 37.81 1.31
710 1673 1.072391 TGCGTGTGTGCGTTTATAGG 58.928 50.000 0.00 0.00 37.81 2.57
711 1674 0.372334 GCGTGTGTGCGTTTATAGGG 59.628 55.000 0.00 0.00 0.00 3.53
712 1675 1.999048 CGTGTGTGCGTTTATAGGGA 58.001 50.000 0.00 0.00 0.00 4.20
713 1676 2.546778 CGTGTGTGCGTTTATAGGGAT 58.453 47.619 0.00 0.00 0.00 3.85
714 1677 2.284150 CGTGTGTGCGTTTATAGGGATG 59.716 50.000 0.00 0.00 0.00 3.51
715 1678 3.527533 GTGTGTGCGTTTATAGGGATGA 58.472 45.455 0.00 0.00 0.00 2.92
716 1679 3.555956 GTGTGTGCGTTTATAGGGATGAG 59.444 47.826 0.00 0.00 0.00 2.90
717 1680 3.196901 TGTGTGCGTTTATAGGGATGAGT 59.803 43.478 0.00 0.00 0.00 3.41
718 1681 3.555956 GTGTGCGTTTATAGGGATGAGTG 59.444 47.826 0.00 0.00 0.00 3.51
719 1682 3.196901 TGTGCGTTTATAGGGATGAGTGT 59.803 43.478 0.00 0.00 0.00 3.55
720 1683 4.403113 TGTGCGTTTATAGGGATGAGTGTA 59.597 41.667 0.00 0.00 0.00 2.90
721 1684 5.069914 TGTGCGTTTATAGGGATGAGTGTAT 59.930 40.000 0.00 0.00 0.00 2.29
722 1685 5.405571 GTGCGTTTATAGGGATGAGTGTATG 59.594 44.000 0.00 0.00 0.00 2.39
723 1686 4.389077 GCGTTTATAGGGATGAGTGTATGC 59.611 45.833 0.00 0.00 0.00 3.14
724 1687 4.621460 CGTTTATAGGGATGAGTGTATGCG 59.379 45.833 0.00 0.00 0.00 4.73
725 1688 2.751166 ATAGGGATGAGTGTATGCGC 57.249 50.000 0.00 0.00 0.00 6.09
726 1689 0.313987 TAGGGATGAGTGTATGCGCG 59.686 55.000 0.00 0.00 0.00 6.86
727 1690 1.227263 GGGATGAGTGTATGCGCGT 60.227 57.895 8.43 7.55 0.00 6.01
728 1691 0.810031 GGGATGAGTGTATGCGCGTT 60.810 55.000 7.78 0.00 0.00 4.84
729 1692 1.006832 GGATGAGTGTATGCGCGTTT 58.993 50.000 7.78 0.00 0.00 3.60
730 1693 1.267532 GGATGAGTGTATGCGCGTTTG 60.268 52.381 7.78 0.00 0.00 2.93
731 1694 1.393539 GATGAGTGTATGCGCGTTTGT 59.606 47.619 7.78 0.00 0.00 2.83
732 1695 2.067414 TGAGTGTATGCGCGTTTGTA 57.933 45.000 7.78 0.00 0.00 2.41
733 1696 2.612604 TGAGTGTATGCGCGTTTGTAT 58.387 42.857 7.78 0.00 0.00 2.29
734 1697 2.347150 TGAGTGTATGCGCGTTTGTATG 59.653 45.455 7.78 0.00 0.00 2.39
735 1698 2.601314 GAGTGTATGCGCGTTTGTATGA 59.399 45.455 7.78 0.00 0.00 2.15
736 1699 2.603110 AGTGTATGCGCGTTTGTATGAG 59.397 45.455 7.78 0.00 0.00 2.90
737 1700 1.326245 TGTATGCGCGTTTGTATGAGC 59.674 47.619 7.78 0.00 36.72 4.26
738 1701 1.593006 GTATGCGCGTTTGTATGAGCT 59.407 47.619 7.78 0.00 37.06 4.09
739 1702 1.086696 ATGCGCGTTTGTATGAGCTT 58.913 45.000 8.43 0.00 37.06 3.74
740 1703 0.871722 TGCGCGTTTGTATGAGCTTT 59.128 45.000 8.43 0.00 37.06 3.51
741 1704 1.250476 GCGCGTTTGTATGAGCTTTG 58.750 50.000 8.43 0.00 33.81 2.77
742 1705 1.250476 CGCGTTTGTATGAGCTTTGC 58.750 50.000 0.00 0.00 0.00 3.68
743 1706 1.250476 GCGTTTGTATGAGCTTTGCG 58.750 50.000 0.00 0.00 0.00 4.85
744 1707 1.399727 GCGTTTGTATGAGCTTTGCGT 60.400 47.619 0.00 0.00 0.00 5.24
745 1708 2.495939 CGTTTGTATGAGCTTTGCGTC 58.504 47.619 0.00 0.00 0.00 5.19
746 1709 2.157668 CGTTTGTATGAGCTTTGCGTCT 59.842 45.455 0.00 0.00 0.00 4.18
747 1710 3.482786 GTTTGTATGAGCTTTGCGTCTG 58.517 45.455 0.00 0.00 0.00 3.51
748 1711 2.455674 TGTATGAGCTTTGCGTCTGT 57.544 45.000 0.00 0.00 0.00 3.41
749 1712 3.586100 TGTATGAGCTTTGCGTCTGTA 57.414 42.857 0.00 0.00 0.00 2.74
750 1713 3.250744 TGTATGAGCTTTGCGTCTGTAC 58.749 45.455 0.00 0.00 0.00 2.90
751 1714 2.751166 ATGAGCTTTGCGTCTGTACT 57.249 45.000 0.00 0.00 0.00 2.73
752 1715 2.526304 TGAGCTTTGCGTCTGTACTT 57.474 45.000 0.00 0.00 0.00 2.24
753 1716 3.653539 TGAGCTTTGCGTCTGTACTTA 57.346 42.857 0.00 0.00 0.00 2.24
754 1717 3.985008 TGAGCTTTGCGTCTGTACTTAA 58.015 40.909 0.00 0.00 0.00 1.85
755 1718 4.373527 TGAGCTTTGCGTCTGTACTTAAA 58.626 39.130 0.00 0.00 0.00 1.52
756 1719 4.812091 TGAGCTTTGCGTCTGTACTTAAAA 59.188 37.500 0.00 0.00 0.00 1.52
757 1720 5.294799 TGAGCTTTGCGTCTGTACTTAAAAA 59.705 36.000 0.00 0.00 0.00 1.94
791 1754 5.697473 TTTGCAGATTGATAAAACGGTGA 57.303 34.783 0.00 0.00 0.00 4.02
792 1755 4.678509 TGCAGATTGATAAAACGGTGAC 57.321 40.909 0.00 0.00 0.00 3.67
968 1957 1.071471 CAGTTCCGGCCACTTCACT 59.929 57.895 2.24 0.00 0.00 3.41
1030 2019 0.506080 GCTGCTGCGTAGATTCATCG 59.494 55.000 4.08 0.00 0.00 3.84
1139 2128 2.488545 GAGACCAAACTCTAGACTCGCA 59.511 50.000 0.00 0.00 34.47 5.10
1154 2143 0.105964 TCGCACCCATTTATCCTCCG 59.894 55.000 0.00 0.00 0.00 4.63
1223 2214 0.878416 TTTTGTATGCCTCACCGTGC 59.122 50.000 0.00 0.00 0.00 5.34
1307 2298 1.927268 GCAGCCCCGTTCGTTTTAAAC 60.927 52.381 0.00 0.00 0.00 2.01
1441 2443 0.322008 GTTTGAGGCCAGGTGAGGAG 60.322 60.000 5.01 0.00 0.00 3.69
1468 2470 6.811253 ACTCCGCAATTATTTAGAACAACA 57.189 33.333 0.00 0.00 0.00 3.33
1505 2507 2.898729 ATGTAGGCAGATGAACCTCG 57.101 50.000 0.00 0.00 37.50 4.63
1733 2736 2.482490 CCTGCCCTTGATTAATGCTTGC 60.482 50.000 0.00 0.00 0.00 4.01
1744 2747 7.510549 TGATTAATGCTTGCCTAGTTAATCC 57.489 36.000 13.17 2.46 39.35 3.01
1866 2881 3.581024 TGCAATTCAAAGGATCTGCAC 57.419 42.857 0.00 0.00 36.57 4.57
2065 3091 7.343316 TGGAAGGTGAAGAATTTTGTAAAAGGA 59.657 33.333 0.00 0.00 0.00 3.36
2130 3159 4.041075 AGGTCTCTTCTTTTCCTCTGTTCC 59.959 45.833 0.00 0.00 0.00 3.62
2202 3231 5.534654 TGGAAAGTTTCTAATGTCCAACTGG 59.465 40.000 15.05 0.00 32.31 4.00
2339 3568 9.243637 GTATCTTCAGTTCTTCACAGTGATATC 57.756 37.037 3.45 0.00 0.00 1.63
2346 3575 8.173775 CAGTTCTTCACAGTGATATCAATTGTC 58.826 37.037 17.00 8.48 0.00 3.18
2421 3651 4.706616 TCTAAACCTGGGACCTCCTAAAT 58.293 43.478 0.00 0.00 36.20 1.40
2521 3753 7.492352 ACTACTTTCGTTCAAACTTTGCTAT 57.508 32.000 0.00 0.00 0.00 2.97
2716 3950 6.909550 ATCTGGGCAAAGTATGTTTAAACA 57.090 33.333 22.58 22.58 44.06 2.83
2717 3951 6.325919 TCTGGGCAAAGTATGTTTAAACAG 57.674 37.500 24.22 11.90 43.04 3.16
3067 4327 3.004524 GGGACGGTGTACTAGCTATTCAG 59.995 52.174 0.00 0.00 0.00 3.02
3133 4393 7.761409 TGTATGACCTAATTTTTAAGCAGCAG 58.239 34.615 0.00 0.00 0.00 4.24
3209 4469 9.930693 TCCCATGGTTGTTAATTTTGTTAATAC 57.069 29.630 11.73 0.00 0.00 1.89
3590 4911 3.511540 GCAAGAAAAAGGCTACTTCCCAT 59.488 43.478 5.19 0.00 35.41 4.00
3614 4935 2.592102 AGCTTTGGGAGATCAAGCAA 57.408 45.000 14.90 0.00 0.00 3.91
3616 4937 3.438183 AGCTTTGGGAGATCAAGCAAAT 58.562 40.909 14.90 0.00 0.00 2.32
3617 4938 3.194968 AGCTTTGGGAGATCAAGCAAATG 59.805 43.478 14.90 0.00 0.00 2.32
3618 4939 3.194116 GCTTTGGGAGATCAAGCAAATGA 59.806 43.478 9.25 0.00 0.00 2.57
3619 4940 4.741342 CTTTGGGAGATCAAGCAAATGAC 58.259 43.478 0.00 0.00 30.82 3.06
3620 4941 2.726821 TGGGAGATCAAGCAAATGACC 58.273 47.619 0.00 0.00 30.82 4.02
3621 4942 2.027385 GGGAGATCAAGCAAATGACCC 58.973 52.381 0.00 0.00 30.82 4.46
3622 4943 2.357569 GGGAGATCAAGCAAATGACCCT 60.358 50.000 0.00 0.00 32.82 4.34
3623 4944 3.359950 GGAGATCAAGCAAATGACCCTT 58.640 45.455 0.00 0.00 30.82 3.95
3624 4945 3.129988 GGAGATCAAGCAAATGACCCTTG 59.870 47.826 0.00 0.00 37.80 3.61
3625 4946 3.760684 GAGATCAAGCAAATGACCCTTGT 59.239 43.478 0.00 0.00 37.72 3.16
3626 4947 4.154942 AGATCAAGCAAATGACCCTTGTT 58.845 39.130 0.00 0.00 37.72 2.83
3627 4948 4.590222 AGATCAAGCAAATGACCCTTGTTT 59.410 37.500 0.00 0.00 37.72 2.83
3628 4949 4.751767 TCAAGCAAATGACCCTTGTTTT 57.248 36.364 0.00 0.00 37.72 2.43
3629 4950 4.440880 TCAAGCAAATGACCCTTGTTTTG 58.559 39.130 0.00 0.00 37.72 2.44
3633 4954 4.735662 CAAATGACCCTTGTTTTGCATG 57.264 40.909 0.00 0.00 0.00 4.06
3634 4955 2.460757 ATGACCCTTGTTTTGCATGC 57.539 45.000 11.82 11.82 0.00 4.06
3635 4956 1.412079 TGACCCTTGTTTTGCATGCT 58.588 45.000 20.33 0.00 0.00 3.79
3636 4957 1.340889 TGACCCTTGTTTTGCATGCTC 59.659 47.619 20.33 4.24 0.00 4.26
3637 4958 1.615392 GACCCTTGTTTTGCATGCTCT 59.385 47.619 20.33 0.00 0.00 4.09
3638 4959 1.615392 ACCCTTGTTTTGCATGCTCTC 59.385 47.619 20.33 7.45 0.00 3.20
3639 4960 1.891150 CCCTTGTTTTGCATGCTCTCT 59.109 47.619 20.33 0.00 0.00 3.10
3640 4961 2.352421 CCCTTGTTTTGCATGCTCTCTG 60.352 50.000 20.33 3.24 0.00 3.35
3641 4962 2.295349 CCTTGTTTTGCATGCTCTCTGT 59.705 45.455 20.33 0.00 0.00 3.41
3642 4963 3.243636 CCTTGTTTTGCATGCTCTCTGTT 60.244 43.478 20.33 0.00 0.00 3.16
3643 4964 4.365723 CTTGTTTTGCATGCTCTCTGTTT 58.634 39.130 20.33 0.00 0.00 2.83
3644 4965 4.389890 TGTTTTGCATGCTCTCTGTTTT 57.610 36.364 20.33 0.00 0.00 2.43
3645 4966 5.512753 TGTTTTGCATGCTCTCTGTTTTA 57.487 34.783 20.33 0.00 0.00 1.52
3646 4967 5.280945 TGTTTTGCATGCTCTCTGTTTTAC 58.719 37.500 20.33 3.46 0.00 2.01
3647 4968 5.067674 TGTTTTGCATGCTCTCTGTTTTACT 59.932 36.000 20.33 0.00 0.00 2.24
3648 4969 6.262049 TGTTTTGCATGCTCTCTGTTTTACTA 59.738 34.615 20.33 0.00 0.00 1.82
3649 4970 5.862924 TTGCATGCTCTCTGTTTTACTAC 57.137 39.130 20.33 0.00 0.00 2.73
3650 4971 4.253685 TGCATGCTCTCTGTTTTACTACC 58.746 43.478 20.33 0.00 0.00 3.18
3651 4972 4.020218 TGCATGCTCTCTGTTTTACTACCT 60.020 41.667 20.33 0.00 0.00 3.08
3652 4973 4.938226 GCATGCTCTCTGTTTTACTACCTT 59.062 41.667 11.37 0.00 0.00 3.50
3653 4974 5.064071 GCATGCTCTCTGTTTTACTACCTTC 59.936 44.000 11.37 0.00 0.00 3.46
3654 4975 4.806330 TGCTCTCTGTTTTACTACCTTCG 58.194 43.478 0.00 0.00 0.00 3.79
3655 4976 4.280174 TGCTCTCTGTTTTACTACCTTCGT 59.720 41.667 0.00 0.00 0.00 3.85
3656 4977 4.858140 GCTCTCTGTTTTACTACCTTCGTC 59.142 45.833 0.00 0.00 0.00 4.20
3657 4978 5.382618 TCTCTGTTTTACTACCTTCGTCC 57.617 43.478 0.00 0.00 0.00 4.79
3658 4979 4.219288 TCTCTGTTTTACTACCTTCGTCCC 59.781 45.833 0.00 0.00 0.00 4.46
3659 4980 3.896888 TCTGTTTTACTACCTTCGTCCCA 59.103 43.478 0.00 0.00 0.00 4.37
3660 4981 4.529377 TCTGTTTTACTACCTTCGTCCCAT 59.471 41.667 0.00 0.00 0.00 4.00
3661 4982 5.716228 TCTGTTTTACTACCTTCGTCCCATA 59.284 40.000 0.00 0.00 0.00 2.74
3662 4983 6.211184 TCTGTTTTACTACCTTCGTCCCATAA 59.789 38.462 0.00 0.00 0.00 1.90
3663 4984 6.949715 TGTTTTACTACCTTCGTCCCATAAT 58.050 36.000 0.00 0.00 0.00 1.28
3664 4985 8.076910 TGTTTTACTACCTTCGTCCCATAATA 57.923 34.615 0.00 0.00 0.00 0.98
3665 4986 8.707449 TGTTTTACTACCTTCGTCCCATAATAT 58.293 33.333 0.00 0.00 0.00 1.28
3669 4990 9.812347 TTACTACCTTCGTCCCATAATATAAGA 57.188 33.333 0.00 0.00 0.00 2.10
3670 4991 8.350852 ACTACCTTCGTCCCATAATATAAGAG 57.649 38.462 0.00 0.00 0.00 2.85
3671 4992 6.038997 ACCTTCGTCCCATAATATAAGAGC 57.961 41.667 0.00 0.00 0.00 4.09
3672 4993 5.103000 CCTTCGTCCCATAATATAAGAGCG 58.897 45.833 0.00 0.00 0.00 5.03
3673 4994 5.336531 CCTTCGTCCCATAATATAAGAGCGT 60.337 44.000 0.00 0.00 0.00 5.07
3674 4995 5.717078 TCGTCCCATAATATAAGAGCGTT 57.283 39.130 0.00 0.00 0.00 4.84
3675 4996 6.092955 TCGTCCCATAATATAAGAGCGTTT 57.907 37.500 0.00 0.00 0.00 3.60
3676 4997 6.518493 TCGTCCCATAATATAAGAGCGTTTT 58.482 36.000 0.00 0.00 0.00 2.43
3677 4998 7.660112 TCGTCCCATAATATAAGAGCGTTTTA 58.340 34.615 0.00 0.00 0.00 1.52
3678 4999 8.308931 TCGTCCCATAATATAAGAGCGTTTTAT 58.691 33.333 0.00 0.00 0.00 1.40
3679 5000 9.577110 CGTCCCATAATATAAGAGCGTTTTATA 57.423 33.333 0.00 1.81 0.00 0.98
3704 5025 6.579491 ACTAGTGTAGTGTCAAAAACGTTC 57.421 37.500 0.00 0.00 37.69 3.95
3705 5026 6.335777 ACTAGTGTAGTGTCAAAAACGTTCT 58.664 36.000 0.00 0.00 37.69 3.01
3706 5027 6.815142 ACTAGTGTAGTGTCAAAAACGTTCTT 59.185 34.615 0.00 0.00 37.69 2.52
3707 5028 7.975616 ACTAGTGTAGTGTCAAAAACGTTCTTA 59.024 33.333 0.00 0.00 37.69 2.10
3708 5029 7.781548 AGTGTAGTGTCAAAAACGTTCTTAT 57.218 32.000 0.00 0.00 0.00 1.73
3709 5030 8.876275 AGTGTAGTGTCAAAAACGTTCTTATA 57.124 30.769 0.00 0.00 0.00 0.98
3710 5031 9.485206 AGTGTAGTGTCAAAAACGTTCTTATAT 57.515 29.630 0.00 0.00 0.00 0.86
3738 5059 9.654663 ATGAGAGTAACTTTTAATGTGTAGACC 57.345 33.333 0.00 0.00 0.00 3.85
3749 5070 4.657814 ATGTGTAGACCCCAAGAAATGT 57.342 40.909 0.00 0.00 0.00 2.71
3853 5174 0.389391 CTATCCGTTCTGGGCGATGT 59.611 55.000 0.00 0.00 38.76 3.06
3880 5202 4.279420 TCTCTGATGATACGAATCTGGGTG 59.721 45.833 0.00 0.00 32.93 4.61
3881 5203 3.062763 CTGATGATACGAATCTGGGTGC 58.937 50.000 0.00 0.00 32.93 5.01
3883 5205 1.199615 TGATACGAATCTGGGTGCCA 58.800 50.000 0.00 0.00 32.93 4.92
3906 5236 9.664332 GCCATGTCTGTATCTTCTGAATATATT 57.336 33.333 0.00 0.00 0.00 1.28
3949 5279 7.227314 CCATGTATGCAATGGCGTAGATATATT 59.773 37.037 3.72 0.00 41.92 1.28
3950 5280 9.260002 CATGTATGCAATGGCGTAGATATATTA 57.740 33.333 3.72 0.00 41.92 0.98
3979 5309 3.866910 TCTACCGTGTCGCCAAAATATTC 59.133 43.478 0.00 0.00 0.00 1.75
3983 5313 2.285602 CGTGTCGCCAAAATATTCGAGG 60.286 50.000 0.00 0.00 0.00 4.63
3987 5317 2.612212 TCGCCAAAATATTCGAGGCTTC 59.388 45.455 18.10 0.00 43.07 3.86
3988 5318 2.287009 CGCCAAAATATTCGAGGCTTCC 60.287 50.000 18.10 0.00 43.07 3.46
3989 5319 2.952310 GCCAAAATATTCGAGGCTTCCT 59.048 45.455 14.94 0.00 42.01 3.36
3990 5320 4.134563 GCCAAAATATTCGAGGCTTCCTA 58.865 43.478 14.94 0.00 42.01 2.94
3991 5321 4.214332 GCCAAAATATTCGAGGCTTCCTAG 59.786 45.833 14.94 0.00 42.01 3.02
3992 5322 4.757149 CCAAAATATTCGAGGCTTCCTAGG 59.243 45.833 0.82 0.82 31.76 3.02
3993 5323 3.686916 AATATTCGAGGCTTCCTAGGC 57.313 47.619 2.96 0.00 46.82 3.93
4045 5375 1.959282 CCTATACTTCGTAACCGGGCT 59.041 52.381 6.32 0.00 33.95 5.19
4082 5413 1.960689 CCGTCCATTGGAGGTTTGTTT 59.039 47.619 20.80 0.00 36.02 2.83
4133 5464 3.044059 GAGCACATGGAACGGCAGC 62.044 63.158 0.00 0.00 0.00 5.25
4152 5483 4.728882 GCAGCGAATGAATGAATCGTCTTT 60.729 41.667 0.00 0.00 38.75 2.52
4160 5491 7.921786 ATGAATGAATCGTCTTTAACCTTCA 57.078 32.000 0.00 0.00 33.20 3.02
4193 5524 1.831652 CGTTCCTCTTCCCCTGCTGT 61.832 60.000 0.00 0.00 0.00 4.40
4212 5543 4.160626 GCTGTTACTGTATCTCACCTCCTT 59.839 45.833 0.00 0.00 0.00 3.36
4257 5588 9.933723 CAAATTCCTCTGTATCCTTTGAATTTT 57.066 29.630 0.00 0.00 38.29 1.82
4378 5709 0.604243 CCCCGTGATTTGTTCGTCCA 60.604 55.000 0.00 0.00 0.00 4.02
4402 5733 0.944311 ATCGGTAACATCCATCGCGC 60.944 55.000 0.00 0.00 0.00 6.86
4418 5749 3.952811 GCTCGGTGCGACTTCTTT 58.047 55.556 0.00 0.00 0.00 2.52
4476 5807 3.947841 GCAACAGTCGCAACGGCA 61.948 61.111 0.00 0.00 41.24 5.69
4490 5821 2.440599 GGCACCATCCCAACCACT 59.559 61.111 0.00 0.00 0.00 4.00
4491 5822 1.678970 GGCACCATCCCAACCACTC 60.679 63.158 0.00 0.00 0.00 3.51
4492 5823 2.040544 GCACCATCCCAACCACTCG 61.041 63.158 0.00 0.00 0.00 4.18
4493 5824 2.040544 CACCATCCCAACCACTCGC 61.041 63.158 0.00 0.00 0.00 5.03
4494 5825 2.224159 ACCATCCCAACCACTCGCT 61.224 57.895 0.00 0.00 0.00 4.93
4495 5826 1.450312 CCATCCCAACCACTCGCTC 60.450 63.158 0.00 0.00 0.00 5.03
4496 5827 1.296392 CATCCCAACCACTCGCTCA 59.704 57.895 0.00 0.00 0.00 4.26
4497 5828 1.021390 CATCCCAACCACTCGCTCAC 61.021 60.000 0.00 0.00 0.00 3.51
4498 5829 1.480212 ATCCCAACCACTCGCTCACA 61.480 55.000 0.00 0.00 0.00 3.58
4499 5830 1.961277 CCCAACCACTCGCTCACAC 60.961 63.158 0.00 0.00 0.00 3.82
4500 5831 1.961277 CCAACCACTCGCTCACACC 60.961 63.158 0.00 0.00 0.00 4.16
4501 5832 1.961277 CAACCACTCGCTCACACCC 60.961 63.158 0.00 0.00 0.00 4.61
4502 5833 2.439960 AACCACTCGCTCACACCCA 61.440 57.895 0.00 0.00 0.00 4.51
4503 5834 1.768684 AACCACTCGCTCACACCCAT 61.769 55.000 0.00 0.00 0.00 4.00
4504 5835 1.448540 CCACTCGCTCACACCCATC 60.449 63.158 0.00 0.00 0.00 3.51
4505 5836 1.293179 CACTCGCTCACACCCATCA 59.707 57.895 0.00 0.00 0.00 3.07
4506 5837 1.016130 CACTCGCTCACACCCATCAC 61.016 60.000 0.00 0.00 0.00 3.06
4507 5838 1.448540 CTCGCTCACACCCATCACC 60.449 63.158 0.00 0.00 0.00 4.02
4508 5839 1.892819 CTCGCTCACACCCATCACCT 61.893 60.000 0.00 0.00 0.00 4.00
4509 5840 1.448540 CGCTCACACCCATCACCTC 60.449 63.158 0.00 0.00 0.00 3.85
4510 5841 1.078143 GCTCACACCCATCACCTCC 60.078 63.158 0.00 0.00 0.00 4.30
4511 5842 1.557269 GCTCACACCCATCACCTCCT 61.557 60.000 0.00 0.00 0.00 3.69
4512 5843 1.866015 CTCACACCCATCACCTCCTA 58.134 55.000 0.00 0.00 0.00 2.94
4513 5844 2.402564 CTCACACCCATCACCTCCTAT 58.597 52.381 0.00 0.00 0.00 2.57
4514 5845 2.366916 CTCACACCCATCACCTCCTATC 59.633 54.545 0.00 0.00 0.00 2.08
4515 5846 1.417890 CACACCCATCACCTCCTATCC 59.582 57.143 0.00 0.00 0.00 2.59
4516 5847 1.009552 ACACCCATCACCTCCTATCCA 59.990 52.381 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.757077 GGGAGGTGACCTGGTTGG 59.243 66.667 9.89 0.00 42.93 3.77
4 5 2.757077 GGGGAGGTGACCTGGTTG 59.243 66.667 9.89 0.00 31.76 3.77
5 6 2.531942 GGGGGAGGTGACCTGGTT 60.532 66.667 9.89 0.00 31.76 3.67
11 12 4.097361 GAAGGCGGGGGAGGTGAC 62.097 72.222 0.00 0.00 0.00 3.67
78 80 1.302033 CTATGCGGATCTGGGGTGC 60.302 63.158 3.14 0.00 0.00 5.01
84 86 0.037512 CCTCCAGCTATGCGGATCTG 60.038 60.000 0.00 0.00 32.86 2.90
135 137 1.561769 CCACATGGCCCACCTCACTA 61.562 60.000 0.00 0.00 36.63 2.74
137 139 2.361610 CCACATGGCCCACCTCAC 60.362 66.667 0.00 0.00 36.63 3.51
163 165 1.518572 GCATGTACGGGAGGTCGTG 60.519 63.158 0.00 0.00 43.70 4.35
174 176 0.105039 AAGCTAGCTCCGGCATGTAC 59.895 55.000 19.65 0.00 41.70 2.90
179 181 4.473520 GGCAAGCTAGCTCCGGCA 62.474 66.667 27.00 0.00 41.70 5.69
181 183 2.107953 GAGGCAAGCTAGCTCCGG 59.892 66.667 19.65 11.96 34.17 5.14
188 190 1.739338 GCTCTAGGCGAGGCAAGCTA 61.739 60.000 4.33 0.00 40.25 3.32
190 192 2.587473 GCTCTAGGCGAGGCAAGC 60.587 66.667 0.00 1.59 40.25 4.01
193 195 3.461773 GGTGCTCTAGGCGAGGCA 61.462 66.667 6.67 6.67 45.43 4.75
194 196 4.577246 CGGTGCTCTAGGCGAGGC 62.577 72.222 0.00 0.00 45.43 4.70
195 197 4.577246 GCGGTGCTCTAGGCGAGG 62.577 72.222 0.00 0.00 45.43 4.63
219 221 0.549950 ATTGGAGGTGAGAGCCATGG 59.450 55.000 7.63 7.63 0.00 3.66
247 249 2.262915 CGTCAGAGTGCCTCCCAC 59.737 66.667 0.00 0.00 45.01 4.61
248 250 2.203640 ACGTCAGAGTGCCTCCCA 60.204 61.111 0.00 0.00 0.00 4.37
249 251 2.262915 CACGTCAGAGTGCCTCCC 59.737 66.667 0.00 0.00 35.17 4.30
292 296 2.359781 CCTCCTCCATCCTAGACCAACT 60.360 54.545 0.00 0.00 0.00 3.16
302 306 3.603965 TCTCTTACTCCTCCTCCATCC 57.396 52.381 0.00 0.00 0.00 3.51
313 317 9.462174 CTCATCAGTGTATCATTTCTCTTACTC 57.538 37.037 0.00 0.00 0.00 2.59
314 318 8.976353 ACTCATCAGTGTATCATTTCTCTTACT 58.024 33.333 0.00 0.00 0.00 2.24
315 319 9.029243 CACTCATCAGTGTATCATTTCTCTTAC 57.971 37.037 0.00 0.00 44.63 2.34
332 336 6.849085 AACTATATAGGGCTCACTCATCAG 57.151 41.667 14.25 0.00 0.00 2.90
336 340 7.563924 ACTGTTAAACTATATAGGGCTCACTCA 59.436 37.037 14.25 2.89 0.00 3.41
340 344 8.313944 TGAACTGTTAAACTATATAGGGCTCA 57.686 34.615 14.25 5.91 0.00 4.26
341 345 9.780186 ATTGAACTGTTAAACTATATAGGGCTC 57.220 33.333 14.25 1.96 0.00 4.70
353 357 9.120422 CATACCCGTTTTATTGAACTGTTAAAC 57.880 33.333 0.00 0.00 0.00 2.01
354 358 9.064706 TCATACCCGTTTTATTGAACTGTTAAA 57.935 29.630 0.00 0.00 0.00 1.52
356 360 8.618702 TTCATACCCGTTTTATTGAACTGTTA 57.381 30.769 0.00 0.00 0.00 2.41
357 361 7.513371 TTCATACCCGTTTTATTGAACTGTT 57.487 32.000 0.00 0.00 0.00 3.16
358 362 7.696992 ATTCATACCCGTTTTATTGAACTGT 57.303 32.000 0.00 0.00 0.00 3.55
359 363 8.980143 AAATTCATACCCGTTTTATTGAACTG 57.020 30.769 0.00 0.00 0.00 3.16
368 376 5.789521 CCAAGGAAAATTCATACCCGTTTT 58.210 37.500 0.00 0.00 0.00 2.43
394 402 2.552155 GGGTCCATTGTCAGTGCTAACA 60.552 50.000 0.00 0.00 0.00 2.41
405 413 3.889859 ATGATAGCATGGGTCCATTGT 57.110 42.857 0.00 0.00 33.90 2.71
469 1432 7.012799 TCCCTTTAACCATTGATTTTTGTTTGC 59.987 33.333 0.00 0.00 0.00 3.68
482 1445 3.895704 ACCACTGTCCCTTTAACCATT 57.104 42.857 0.00 0.00 0.00 3.16
483 1446 4.079958 GGATACCACTGTCCCTTTAACCAT 60.080 45.833 0.00 0.00 0.00 3.55
484 1447 3.264964 GGATACCACTGTCCCTTTAACCA 59.735 47.826 0.00 0.00 0.00 3.67
485 1448 3.522343 AGGATACCACTGTCCCTTTAACC 59.478 47.826 0.00 0.00 35.00 2.85
486 1449 4.224370 TGAGGATACCACTGTCCCTTTAAC 59.776 45.833 0.00 0.00 35.00 2.01
487 1450 4.431378 TGAGGATACCACTGTCCCTTTAA 58.569 43.478 0.00 0.00 35.00 1.52
488 1451 4.030913 CTGAGGATACCACTGTCCCTTTA 58.969 47.826 0.00 0.00 35.00 1.85
489 1452 2.840651 CTGAGGATACCACTGTCCCTTT 59.159 50.000 0.00 0.00 35.00 3.11
490 1453 2.472029 CTGAGGATACCACTGTCCCTT 58.528 52.381 0.00 0.00 35.00 3.95
491 1454 1.967274 GCTGAGGATACCACTGTCCCT 60.967 57.143 0.00 0.00 35.00 4.20
492 1455 0.466124 GCTGAGGATACCACTGTCCC 59.534 60.000 0.00 0.00 35.00 4.46
493 1456 0.466124 GGCTGAGGATACCACTGTCC 59.534 60.000 0.00 0.00 34.64 4.02
494 1457 0.466124 GGGCTGAGGATACCACTGTC 59.534 60.000 0.00 0.00 37.17 3.51
495 1458 0.252696 TGGGCTGAGGATACCACTGT 60.253 55.000 0.00 0.00 37.17 3.55
496 1459 2.607811 TGGGCTGAGGATACCACTG 58.392 57.895 0.00 0.00 37.17 3.66
499 1462 0.982852 CTGGTGGGCTGAGGATACCA 60.983 60.000 0.00 0.00 38.98 3.25
500 1463 1.700042 CCTGGTGGGCTGAGGATACC 61.700 65.000 0.00 0.00 37.17 2.73
501 1464 1.832912 CCTGGTGGGCTGAGGATAC 59.167 63.158 0.00 0.00 0.00 2.24
502 1465 4.399764 CCTGGTGGGCTGAGGATA 57.600 61.111 0.00 0.00 0.00 2.59
520 1483 1.576421 CGAGCAGCAGGGTTTGAAC 59.424 57.895 0.00 0.00 0.00 3.18
521 1484 4.063529 CGAGCAGCAGGGTTTGAA 57.936 55.556 0.00 0.00 0.00 2.69
532 1495 4.825546 AATCCAGAAATAATGCGAGCAG 57.174 40.909 3.58 0.00 0.00 4.24
533 1496 6.882610 ATAAATCCAGAAATAATGCGAGCA 57.117 33.333 0.00 0.00 0.00 4.26
534 1497 7.862372 TGAAATAAATCCAGAAATAATGCGAGC 59.138 33.333 0.00 0.00 0.00 5.03
535 1498 9.390795 CTGAAATAAATCCAGAAATAATGCGAG 57.609 33.333 0.00 0.00 0.00 5.03
536 1499 8.352201 CCTGAAATAAATCCAGAAATAATGCGA 58.648 33.333 0.00 0.00 0.00 5.10
537 1500 8.352201 TCCTGAAATAAATCCAGAAATAATGCG 58.648 33.333 0.00 0.00 0.00 4.73
543 1506 9.895138 CCAAAATCCTGAAATAAATCCAGAAAT 57.105 29.630 0.00 0.00 0.00 2.17
544 1507 8.320617 CCCAAAATCCTGAAATAAATCCAGAAA 58.679 33.333 0.00 0.00 0.00 2.52
545 1508 7.581270 GCCCAAAATCCTGAAATAAATCCAGAA 60.581 37.037 0.00 0.00 0.00 3.02
546 1509 6.127083 GCCCAAAATCCTGAAATAAATCCAGA 60.127 38.462 0.00 0.00 0.00 3.86
547 1510 6.051074 GCCCAAAATCCTGAAATAAATCCAG 58.949 40.000 0.00 0.00 0.00 3.86
548 1511 5.395103 CGCCCAAAATCCTGAAATAAATCCA 60.395 40.000 0.00 0.00 0.00 3.41
549 1512 5.049828 CGCCCAAAATCCTGAAATAAATCC 58.950 41.667 0.00 0.00 0.00 3.01
550 1513 5.748630 GTCGCCCAAAATCCTGAAATAAATC 59.251 40.000 0.00 0.00 0.00 2.17
551 1514 5.660460 GTCGCCCAAAATCCTGAAATAAAT 58.340 37.500 0.00 0.00 0.00 1.40
552 1515 4.380023 CGTCGCCCAAAATCCTGAAATAAA 60.380 41.667 0.00 0.00 0.00 1.40
553 1516 3.127895 CGTCGCCCAAAATCCTGAAATAA 59.872 43.478 0.00 0.00 0.00 1.40
554 1517 2.680841 CGTCGCCCAAAATCCTGAAATA 59.319 45.455 0.00 0.00 0.00 1.40
555 1518 1.472480 CGTCGCCCAAAATCCTGAAAT 59.528 47.619 0.00 0.00 0.00 2.17
556 1519 0.878416 CGTCGCCCAAAATCCTGAAA 59.122 50.000 0.00 0.00 0.00 2.69
557 1520 1.582610 GCGTCGCCCAAAATCCTGAA 61.583 55.000 5.75 0.00 0.00 3.02
558 1521 2.038269 GCGTCGCCCAAAATCCTGA 61.038 57.895 5.75 0.00 0.00 3.86
559 1522 2.485122 GCGTCGCCCAAAATCCTG 59.515 61.111 5.75 0.00 0.00 3.86
560 1523 3.124921 CGCGTCGCCCAAAATCCT 61.125 61.111 12.44 0.00 0.00 3.24
571 1534 2.720758 CCTCACTGAAAGCGCGTCG 61.721 63.158 8.43 3.33 37.60 5.12
572 1535 1.347817 CTCCTCACTGAAAGCGCGTC 61.348 60.000 8.43 4.19 37.60 5.19
573 1536 1.373497 CTCCTCACTGAAAGCGCGT 60.373 57.895 8.43 0.00 37.60 6.01
574 1537 1.080501 TCTCCTCACTGAAAGCGCG 60.081 57.895 0.00 0.00 37.60 6.86
575 1538 0.319900 TGTCTCCTCACTGAAAGCGC 60.320 55.000 0.00 0.00 37.60 5.92
576 1539 2.376808 ATGTCTCCTCACTGAAAGCG 57.623 50.000 0.00 0.00 37.60 4.68
577 1540 3.006247 GGAATGTCTCCTCACTGAAAGC 58.994 50.000 0.00 0.00 41.61 3.51
578 1541 3.604582 GGGAATGTCTCCTCACTGAAAG 58.395 50.000 0.00 0.00 44.68 2.62
579 1542 2.028112 CGGGAATGTCTCCTCACTGAAA 60.028 50.000 0.00 0.00 44.68 2.69
580 1543 1.550524 CGGGAATGTCTCCTCACTGAA 59.449 52.381 0.00 0.00 44.68 3.02
581 1544 1.186200 CGGGAATGTCTCCTCACTGA 58.814 55.000 0.00 0.00 44.68 3.41
582 1545 0.898320 ACGGGAATGTCTCCTCACTG 59.102 55.000 0.00 0.00 44.68 3.66
583 1546 1.187087 GACGGGAATGTCTCCTCACT 58.813 55.000 0.00 0.00 44.68 3.41
584 1547 0.179134 CGACGGGAATGTCTCCTCAC 60.179 60.000 0.00 0.00 44.68 3.51
585 1548 0.323087 TCGACGGGAATGTCTCCTCA 60.323 55.000 0.00 0.00 44.68 3.86
586 1549 0.100861 GTCGACGGGAATGTCTCCTC 59.899 60.000 0.00 0.00 44.68 3.71
587 1550 1.654954 CGTCGACGGGAATGTCTCCT 61.655 60.000 29.70 0.00 44.68 3.69
588 1551 1.226603 CGTCGACGGGAATGTCTCC 60.227 63.158 29.70 0.00 44.54 3.71
589 1552 0.522915 GTCGTCGACGGGAATGTCTC 60.523 60.000 35.05 12.17 40.29 3.36
590 1553 1.505353 GTCGTCGACGGGAATGTCT 59.495 57.895 35.05 0.00 40.29 3.41
591 1554 4.068302 GTCGTCGACGGGAATGTC 57.932 61.111 35.05 14.32 40.29 3.06
600 1563 0.923010 GTAATCGCCTCGTCGTCGAC 60.923 60.000 15.51 15.51 41.35 4.20
601 1564 1.349627 GTAATCGCCTCGTCGTCGA 59.650 57.895 4.42 4.42 44.12 4.20
602 1565 1.997227 CGTAATCGCCTCGTCGTCG 60.997 63.158 0.00 0.00 38.55 5.12
603 1566 0.041488 ATCGTAATCGCCTCGTCGTC 60.041 55.000 0.00 0.00 36.96 4.20
604 1567 0.316772 CATCGTAATCGCCTCGTCGT 60.317 55.000 0.00 0.00 36.96 4.34
605 1568 0.041576 TCATCGTAATCGCCTCGTCG 60.042 55.000 0.00 0.00 36.96 5.12
606 1569 1.002684 AGTCATCGTAATCGCCTCGTC 60.003 52.381 0.00 0.00 36.96 4.20
607 1570 1.022735 AGTCATCGTAATCGCCTCGT 58.977 50.000 0.00 0.00 36.96 4.18
608 1571 2.044860 GAAGTCATCGTAATCGCCTCG 58.955 52.381 0.00 0.00 36.96 4.63
609 1572 2.044860 CGAAGTCATCGTAATCGCCTC 58.955 52.381 0.00 0.00 46.52 4.70
610 1573 2.121116 CGAAGTCATCGTAATCGCCT 57.879 50.000 0.00 0.00 46.52 5.52
619 1582 6.693113 TCATCTTGAGATTTACGAAGTCATCG 59.307 38.462 0.00 0.00 44.39 3.84
620 1583 7.993821 TCATCTTGAGATTTACGAAGTCATC 57.006 36.000 0.00 0.00 35.39 2.92
622 1585 9.468532 CATATCATCTTGAGATTTACGAAGTCA 57.531 33.333 0.00 0.00 35.39 3.41
623 1586 9.469807 ACATATCATCTTGAGATTTACGAAGTC 57.530 33.333 0.00 0.00 35.39 3.01
624 1587 9.469807 GACATATCATCTTGAGATTTACGAAGT 57.530 33.333 0.00 0.00 37.29 3.01
625 1588 8.634265 CGACATATCATCTTGAGATTTACGAAG 58.366 37.037 0.00 0.00 31.21 3.79
626 1589 7.595130 CCGACATATCATCTTGAGATTTACGAA 59.405 37.037 0.00 0.00 31.21 3.85
627 1590 7.084486 CCGACATATCATCTTGAGATTTACGA 58.916 38.462 0.00 0.00 31.21 3.43
628 1591 6.183360 GCCGACATATCATCTTGAGATTTACG 60.183 42.308 0.00 0.00 31.21 3.18
629 1592 6.870965 AGCCGACATATCATCTTGAGATTTAC 59.129 38.462 0.00 0.00 31.21 2.01
630 1593 6.997655 AGCCGACATATCATCTTGAGATTTA 58.002 36.000 0.00 0.00 31.21 1.40
631 1594 5.862845 AGCCGACATATCATCTTGAGATTT 58.137 37.500 0.00 0.00 31.21 2.17
632 1595 5.011431 TGAGCCGACATATCATCTTGAGATT 59.989 40.000 0.00 0.00 31.21 2.40
633 1596 4.525874 TGAGCCGACATATCATCTTGAGAT 59.474 41.667 0.00 0.00 34.56 2.75
634 1597 3.891366 TGAGCCGACATATCATCTTGAGA 59.109 43.478 0.00 0.00 0.00 3.27
635 1598 4.236147 CTGAGCCGACATATCATCTTGAG 58.764 47.826 0.00 0.00 0.00 3.02
636 1599 3.638627 ACTGAGCCGACATATCATCTTGA 59.361 43.478 0.00 0.00 0.00 3.02
637 1600 3.986572 GACTGAGCCGACATATCATCTTG 59.013 47.826 0.00 0.00 0.00 3.02
638 1601 3.894427 AGACTGAGCCGACATATCATCTT 59.106 43.478 0.00 0.00 0.00 2.40
639 1602 3.495331 AGACTGAGCCGACATATCATCT 58.505 45.455 0.00 0.00 0.00 2.90
640 1603 3.505680 AGAGACTGAGCCGACATATCATC 59.494 47.826 0.00 0.00 0.00 2.92
641 1604 3.495331 AGAGACTGAGCCGACATATCAT 58.505 45.455 0.00 0.00 0.00 2.45
642 1605 2.881513 GAGAGACTGAGCCGACATATCA 59.118 50.000 0.00 0.00 0.00 2.15
643 1606 2.095969 CGAGAGACTGAGCCGACATATC 60.096 54.545 0.00 0.00 0.00 1.63
644 1607 1.876799 CGAGAGACTGAGCCGACATAT 59.123 52.381 0.00 0.00 0.00 1.78
645 1608 1.134491 TCGAGAGACTGAGCCGACATA 60.134 52.381 0.00 0.00 33.31 2.29
646 1609 0.393132 TCGAGAGACTGAGCCGACAT 60.393 55.000 0.00 0.00 33.31 3.06
647 1610 0.605589 TTCGAGAGACTGAGCCGACA 60.606 55.000 0.00 0.00 41.84 4.35
648 1611 0.098025 CTTCGAGAGACTGAGCCGAC 59.902 60.000 0.00 0.00 41.84 4.79
649 1612 0.036294 TCTTCGAGAGACTGAGCCGA 60.036 55.000 0.00 0.00 41.84 5.54
650 1613 1.021202 ATCTTCGAGAGACTGAGCCG 58.979 55.000 0.35 0.00 41.84 5.52
651 1614 1.535860 GCATCTTCGAGAGACTGAGCC 60.536 57.143 0.35 0.00 41.84 4.70
652 1615 1.405105 AGCATCTTCGAGAGACTGAGC 59.595 52.381 0.35 0.00 41.84 4.26
653 1616 2.682352 TGAGCATCTTCGAGAGACTGAG 59.318 50.000 0.35 0.00 41.84 3.35
654 1617 2.716217 TGAGCATCTTCGAGAGACTGA 58.284 47.619 0.35 0.00 41.84 3.41
655 1618 3.713858 ATGAGCATCTTCGAGAGACTG 57.286 47.619 0.35 2.81 41.84 3.51
656 1619 3.253188 GCTATGAGCATCTTCGAGAGACT 59.747 47.826 0.00 0.00 41.89 3.24
657 1620 3.564511 GCTATGAGCATCTTCGAGAGAC 58.435 50.000 0.00 0.00 41.89 3.36
658 1621 3.913548 GCTATGAGCATCTTCGAGAGA 57.086 47.619 0.00 0.79 41.89 3.10
670 1633 2.432510 ACACTCTAACCCTGCTATGAGC 59.567 50.000 0.00 0.00 42.82 4.26
671 1634 3.739519 GCACACTCTAACCCTGCTATGAG 60.740 52.174 0.00 0.00 0.00 2.90
672 1635 2.168521 GCACACTCTAACCCTGCTATGA 59.831 50.000 0.00 0.00 0.00 2.15
673 1636 2.555199 GCACACTCTAACCCTGCTATG 58.445 52.381 0.00 0.00 0.00 2.23
674 1637 1.137086 CGCACACTCTAACCCTGCTAT 59.863 52.381 0.00 0.00 0.00 2.97
675 1638 0.530744 CGCACACTCTAACCCTGCTA 59.469 55.000 0.00 0.00 0.00 3.49
676 1639 1.293498 CGCACACTCTAACCCTGCT 59.707 57.895 0.00 0.00 0.00 4.24
677 1640 1.004918 ACGCACACTCTAACCCTGC 60.005 57.895 0.00 0.00 0.00 4.85
678 1641 0.033504 ACACGCACACTCTAACCCTG 59.966 55.000 0.00 0.00 0.00 4.45
679 1642 0.033504 CACACGCACACTCTAACCCT 59.966 55.000 0.00 0.00 0.00 4.34
680 1643 0.249741 ACACACGCACACTCTAACCC 60.250 55.000 0.00 0.00 0.00 4.11
681 1644 0.859232 CACACACGCACACTCTAACC 59.141 55.000 0.00 0.00 0.00 2.85
682 1645 0.232303 GCACACACGCACACTCTAAC 59.768 55.000 0.00 0.00 0.00 2.34
683 1646 1.212455 CGCACACACGCACACTCTAA 61.212 55.000 0.00 0.00 0.00 2.10
684 1647 1.660264 CGCACACACGCACACTCTA 60.660 57.895 0.00 0.00 0.00 2.43
685 1648 2.961721 CGCACACACGCACACTCT 60.962 61.111 0.00 0.00 0.00 3.24
686 1649 2.304516 AAACGCACACACGCACACTC 62.305 55.000 0.00 0.00 36.19 3.51
687 1650 1.084935 TAAACGCACACACGCACACT 61.085 50.000 0.00 0.00 36.19 3.55
688 1651 0.041663 ATAAACGCACACACGCACAC 60.042 50.000 0.00 0.00 36.19 3.82
689 1652 1.457683 CTATAAACGCACACACGCACA 59.542 47.619 0.00 0.00 36.19 4.57
690 1653 1.201877 CCTATAAACGCACACACGCAC 60.202 52.381 0.00 0.00 36.19 5.34
691 1654 1.072391 CCTATAAACGCACACACGCA 58.928 50.000 0.00 0.00 36.19 5.24
692 1655 0.372334 CCCTATAAACGCACACACGC 59.628 55.000 0.00 0.00 36.19 5.34
693 1656 1.999048 TCCCTATAAACGCACACACG 58.001 50.000 0.00 0.00 39.50 4.49
694 1657 3.527533 TCATCCCTATAAACGCACACAC 58.472 45.455 0.00 0.00 0.00 3.82
695 1658 3.196901 ACTCATCCCTATAAACGCACACA 59.803 43.478 0.00 0.00 0.00 3.72
696 1659 3.555956 CACTCATCCCTATAAACGCACAC 59.444 47.826 0.00 0.00 0.00 3.82
697 1660 3.196901 ACACTCATCCCTATAAACGCACA 59.803 43.478 0.00 0.00 0.00 4.57
698 1661 3.793559 ACACTCATCCCTATAAACGCAC 58.206 45.455 0.00 0.00 0.00 5.34
699 1662 5.538118 CATACACTCATCCCTATAAACGCA 58.462 41.667 0.00 0.00 0.00 5.24
700 1663 4.389077 GCATACACTCATCCCTATAAACGC 59.611 45.833 0.00 0.00 0.00 4.84
701 1664 4.621460 CGCATACACTCATCCCTATAAACG 59.379 45.833 0.00 0.00 0.00 3.60
702 1665 4.389077 GCGCATACACTCATCCCTATAAAC 59.611 45.833 0.30 0.00 0.00 2.01
703 1666 4.566004 GCGCATACACTCATCCCTATAAA 58.434 43.478 0.30 0.00 0.00 1.40
704 1667 3.366985 CGCGCATACACTCATCCCTATAA 60.367 47.826 8.75 0.00 0.00 0.98
705 1668 2.163613 CGCGCATACACTCATCCCTATA 59.836 50.000 8.75 0.00 0.00 1.31
706 1669 1.067565 CGCGCATACACTCATCCCTAT 60.068 52.381 8.75 0.00 0.00 2.57
707 1670 0.313987 CGCGCATACACTCATCCCTA 59.686 55.000 8.75 0.00 0.00 3.53
708 1671 1.068083 CGCGCATACACTCATCCCT 59.932 57.895 8.75 0.00 0.00 4.20
709 1672 0.810031 AACGCGCATACACTCATCCC 60.810 55.000 5.73 0.00 0.00 3.85
710 1673 1.006832 AAACGCGCATACACTCATCC 58.993 50.000 5.73 0.00 0.00 3.51
711 1674 1.393539 ACAAACGCGCATACACTCATC 59.606 47.619 5.73 0.00 0.00 2.92
712 1675 1.438651 ACAAACGCGCATACACTCAT 58.561 45.000 5.73 0.00 0.00 2.90
713 1676 2.067414 TACAAACGCGCATACACTCA 57.933 45.000 5.73 0.00 0.00 3.41
714 1677 2.601314 TCATACAAACGCGCATACACTC 59.399 45.455 5.73 0.00 0.00 3.51
715 1678 2.603110 CTCATACAAACGCGCATACACT 59.397 45.455 5.73 0.00 0.00 3.55
716 1679 2.845764 GCTCATACAAACGCGCATACAC 60.846 50.000 5.73 0.00 0.00 2.90
717 1680 1.326245 GCTCATACAAACGCGCATACA 59.674 47.619 5.73 0.00 0.00 2.29
718 1681 1.593006 AGCTCATACAAACGCGCATAC 59.407 47.619 5.73 0.00 0.00 2.39
719 1682 1.934589 AGCTCATACAAACGCGCATA 58.065 45.000 5.73 0.00 0.00 3.14
720 1683 1.086696 AAGCTCATACAAACGCGCAT 58.913 45.000 5.73 0.00 0.00 4.73
721 1684 0.871722 AAAGCTCATACAAACGCGCA 59.128 45.000 5.73 0.00 0.00 6.09
722 1685 1.250476 CAAAGCTCATACAAACGCGC 58.750 50.000 5.73 0.00 0.00 6.86
723 1686 1.250476 GCAAAGCTCATACAAACGCG 58.750 50.000 3.53 3.53 0.00 6.01
724 1687 1.250476 CGCAAAGCTCATACAAACGC 58.750 50.000 0.00 0.00 0.00 4.84
725 1688 2.157668 AGACGCAAAGCTCATACAAACG 59.842 45.455 0.00 0.00 0.00 3.60
726 1689 3.058914 ACAGACGCAAAGCTCATACAAAC 60.059 43.478 0.00 0.00 0.00 2.93
727 1690 3.138304 ACAGACGCAAAGCTCATACAAA 58.862 40.909 0.00 0.00 0.00 2.83
728 1691 2.766313 ACAGACGCAAAGCTCATACAA 58.234 42.857 0.00 0.00 0.00 2.41
729 1692 2.455674 ACAGACGCAAAGCTCATACA 57.544 45.000 0.00 0.00 0.00 2.29
730 1693 3.512680 AGTACAGACGCAAAGCTCATAC 58.487 45.455 0.00 0.00 0.00 2.39
731 1694 3.868757 AGTACAGACGCAAAGCTCATA 57.131 42.857 0.00 0.00 0.00 2.15
732 1695 2.751166 AGTACAGACGCAAAGCTCAT 57.249 45.000 0.00 0.00 0.00 2.90
733 1696 2.526304 AAGTACAGACGCAAAGCTCA 57.474 45.000 0.00 0.00 0.00 4.26
734 1697 4.985044 TTTAAGTACAGACGCAAAGCTC 57.015 40.909 0.00 0.00 0.00 4.09
735 1698 5.744666 TTTTTAAGTACAGACGCAAAGCT 57.255 34.783 0.00 0.00 0.00 3.74
756 1719 7.804843 TCAATCTGCAAAAACCATCATTTTT 57.195 28.000 0.00 0.00 41.38 1.94
757 1720 7.989416 ATCAATCTGCAAAAACCATCATTTT 57.011 28.000 0.00 0.00 33.13 1.82
758 1721 9.504708 TTTATCAATCTGCAAAAACCATCATTT 57.495 25.926 0.00 0.00 0.00 2.32
759 1722 9.504708 TTTTATCAATCTGCAAAAACCATCATT 57.495 25.926 0.00 0.00 0.00 2.57
760 1723 8.938906 GTTTTATCAATCTGCAAAAACCATCAT 58.061 29.630 8.73 0.00 35.17 2.45
761 1724 7.116090 CGTTTTATCAATCTGCAAAAACCATCA 59.884 33.333 12.60 0.00 36.94 3.07
775 1738 8.797266 AAGAAAAAGTCACCGTTTTATCAATC 57.203 30.769 0.00 0.00 33.32 2.67
791 1754 5.240623 TGTGCACGATGGATAAAGAAAAAGT 59.759 36.000 13.13 0.00 0.00 2.66
792 1755 5.698832 TGTGCACGATGGATAAAGAAAAAG 58.301 37.500 13.13 0.00 0.00 2.27
1139 2128 2.654863 CAAAGCGGAGGATAAATGGGT 58.345 47.619 0.00 0.00 0.00 4.51
1154 2143 0.371645 CGAGATGGACGAAGCAAAGC 59.628 55.000 0.00 0.00 0.00 3.51
1223 2214 3.908081 GCGCCTGCAATCATGGGG 61.908 66.667 0.00 2.00 42.15 4.96
1307 2298 3.568007 CAGGAGATCTAGGTCGAAAGAGG 59.432 52.174 0.00 0.00 43.49 3.69
1441 2443 7.303634 TGTTCTAAATAATTGCGGAGTTCTC 57.696 36.000 0.00 0.00 0.00 2.87
1468 2470 6.480320 GCCTACATAATTCGTCTGAGTTCATT 59.520 38.462 0.00 0.00 0.00 2.57
1505 2507 0.253044 TGCCCTCAATGCACTCTACC 59.747 55.000 0.00 0.00 32.85 3.18
1619 2621 4.142600 CCAAGTTAGTACAGCTTGATTGCC 60.143 45.833 19.05 0.00 45.57 4.52
1733 2736 5.986135 GTCACAGCAGTATGGATTAACTAGG 59.014 44.000 0.00 0.00 35.86 3.02
1744 2747 2.095372 CACATGCAGTCACAGCAGTATG 59.905 50.000 0.00 0.00 46.36 2.39
2065 3091 4.439289 GCAACAAGCTGAAAGAACTCAAGT 60.439 41.667 0.00 0.00 41.15 3.16
2130 3159 8.238631 TGACAAATGAGACAATGTGAATATGTG 58.761 33.333 0.00 0.00 0.00 3.21
2173 3202 5.774690 TGGACATTAGAAACTTTCCAGCAAT 59.225 36.000 0.00 0.00 0.00 3.56
2174 3203 5.136828 TGGACATTAGAAACTTTCCAGCAA 58.863 37.500 0.00 0.00 0.00 3.91
2202 3231 1.478916 GAGGTCTGTAGGACAGGAAGC 59.521 57.143 6.77 0.00 45.94 3.86
2339 3568 5.342806 TCAGTTAAGAACGCAGACAATTG 57.657 39.130 3.24 3.24 36.23 2.32
2346 3575 4.213270 TGTGGAATTCAGTTAAGAACGCAG 59.787 41.667 7.93 0.00 36.23 5.18
2399 3629 3.858696 TTAGGAGGTCCCAGGTTTAGA 57.141 47.619 0.00 0.00 37.41 2.10
2401 3631 6.973700 TTTATTTAGGAGGTCCCAGGTTTA 57.026 37.500 0.00 0.00 37.41 2.01
2521 3753 5.900425 ACTTGAACAAATGCAACACATACA 58.100 33.333 0.00 0.00 38.34 2.29
2634 3868 9.912634 GAAAATTGTTGGATTCTGAGTGAATTA 57.087 29.630 0.00 0.00 44.70 1.40
2635 3869 8.645110 AGAAAATTGTTGGATTCTGAGTGAATT 58.355 29.630 0.00 0.00 44.70 2.17
2716 3950 5.063880 GTGGTGACCTGAGAAAACATAACT 58.936 41.667 2.11 0.00 0.00 2.24
2717 3951 4.215613 GGTGGTGACCTGAGAAAACATAAC 59.784 45.833 2.11 0.00 39.47 1.89
2833 4075 9.436957 TCCTAGAGTAAATGTGAAGTCAAAATC 57.563 33.333 0.00 0.00 0.00 2.17
2954 4197 6.658831 TGCTACGTTTTTCTCAGAAATCAAG 58.341 36.000 0.00 0.00 0.00 3.02
3133 4393 4.996122 TGTTTTGAACATGATCATTTGGCC 59.004 37.500 5.16 0.00 36.25 5.36
3340 4636 9.965824 CAAATTTCCCTATAAGAAATACGCATT 57.034 29.630 9.64 0.95 41.84 3.56
3590 4911 3.369892 GCTTGATCTCCCAAAGCTACTCA 60.370 47.826 7.32 0.00 0.00 3.41
3614 4935 2.369532 AGCATGCAAAACAAGGGTCATT 59.630 40.909 21.98 0.00 0.00 2.57
3616 4937 1.340889 GAGCATGCAAAACAAGGGTCA 59.659 47.619 21.98 0.00 35.44 4.02
3617 4938 1.615392 AGAGCATGCAAAACAAGGGTC 59.385 47.619 21.98 4.21 35.52 4.46
3618 4939 1.615392 GAGAGCATGCAAAACAAGGGT 59.385 47.619 21.98 0.00 0.00 4.34
3619 4940 1.891150 AGAGAGCATGCAAAACAAGGG 59.109 47.619 21.98 0.00 0.00 3.95
3620 4941 2.295349 ACAGAGAGCATGCAAAACAAGG 59.705 45.455 21.98 3.85 0.00 3.61
3621 4942 3.637998 ACAGAGAGCATGCAAAACAAG 57.362 42.857 21.98 5.78 0.00 3.16
3622 4943 4.389890 AAACAGAGAGCATGCAAAACAA 57.610 36.364 21.98 0.00 0.00 2.83
3623 4944 4.389890 AAAACAGAGAGCATGCAAAACA 57.610 36.364 21.98 0.00 0.00 2.83
3624 4945 5.523369 AGTAAAACAGAGAGCATGCAAAAC 58.477 37.500 21.98 8.21 0.00 2.43
3625 4946 5.772825 AGTAAAACAGAGAGCATGCAAAA 57.227 34.783 21.98 0.00 0.00 2.44
3626 4947 5.181245 GGTAGTAAAACAGAGAGCATGCAAA 59.819 40.000 21.98 0.00 0.00 3.68
3627 4948 4.695455 GGTAGTAAAACAGAGAGCATGCAA 59.305 41.667 21.98 0.00 0.00 4.08
3628 4949 4.020218 AGGTAGTAAAACAGAGAGCATGCA 60.020 41.667 21.98 0.00 0.00 3.96
3629 4950 4.508662 AGGTAGTAAAACAGAGAGCATGC 58.491 43.478 10.51 10.51 0.00 4.06
3630 4951 5.289675 CGAAGGTAGTAAAACAGAGAGCATG 59.710 44.000 0.00 0.00 0.00 4.06
3631 4952 5.047235 ACGAAGGTAGTAAAACAGAGAGCAT 60.047 40.000 0.00 0.00 0.00 3.79
3632 4953 4.280174 ACGAAGGTAGTAAAACAGAGAGCA 59.720 41.667 0.00 0.00 0.00 4.26
3633 4954 4.807443 ACGAAGGTAGTAAAACAGAGAGC 58.193 43.478 0.00 0.00 0.00 4.09
3634 4955 5.400703 GGACGAAGGTAGTAAAACAGAGAG 58.599 45.833 0.00 0.00 0.00 3.20
3635 4956 4.219288 GGGACGAAGGTAGTAAAACAGAGA 59.781 45.833 0.00 0.00 0.00 3.10
3636 4957 4.021719 TGGGACGAAGGTAGTAAAACAGAG 60.022 45.833 0.00 0.00 0.00 3.35
3637 4958 3.896888 TGGGACGAAGGTAGTAAAACAGA 59.103 43.478 0.00 0.00 0.00 3.41
3638 4959 4.261578 TGGGACGAAGGTAGTAAAACAG 57.738 45.455 0.00 0.00 0.00 3.16
3639 4960 4.895668 ATGGGACGAAGGTAGTAAAACA 57.104 40.909 0.00 0.00 0.00 2.83
3643 4964 9.812347 TCTTATATTATGGGACGAAGGTAGTAA 57.188 33.333 0.00 0.00 0.00 2.24
3644 4965 9.458727 CTCTTATATTATGGGACGAAGGTAGTA 57.541 37.037 0.00 0.00 0.00 1.82
3645 4966 7.093858 GCTCTTATATTATGGGACGAAGGTAGT 60.094 40.741 0.00 0.00 0.00 2.73
3646 4967 7.259161 GCTCTTATATTATGGGACGAAGGTAG 58.741 42.308 0.00 0.00 0.00 3.18
3647 4968 6.127814 CGCTCTTATATTATGGGACGAAGGTA 60.128 42.308 0.00 0.00 0.00 3.08
3648 4969 5.336531 CGCTCTTATATTATGGGACGAAGGT 60.337 44.000 0.00 0.00 0.00 3.50
3649 4970 5.103000 CGCTCTTATATTATGGGACGAAGG 58.897 45.833 0.00 0.00 0.00 3.46
3650 4971 5.710984 ACGCTCTTATATTATGGGACGAAG 58.289 41.667 0.00 0.00 0.00 3.79
3651 4972 5.717078 ACGCTCTTATATTATGGGACGAA 57.283 39.130 0.00 0.00 0.00 3.85
3652 4973 5.717078 AACGCTCTTATATTATGGGACGA 57.283 39.130 0.00 0.00 0.00 4.20
3653 4974 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
3664 4985 9.947669 CTACACTAGTGTATAAAACGCTCTTAT 57.052 33.333 30.78 6.12 46.05 1.73
3665 4986 8.950210 ACTACACTAGTGTATAAAACGCTCTTA 58.050 33.333 30.78 10.10 46.05 2.10
3666 4987 7.754027 CACTACACTAGTGTATAAAACGCTCTT 59.246 37.037 30.78 7.08 46.05 2.85
3667 4988 7.249147 CACTACACTAGTGTATAAAACGCTCT 58.751 38.462 30.78 7.49 46.05 4.09
3668 4989 7.433873 CACTACACTAGTGTATAAAACGCTC 57.566 40.000 30.78 0.00 46.05 5.03
3681 5002 6.335777 AGAACGTTTTTGACACTACACTAGT 58.664 36.000 0.46 0.00 40.28 2.57
3682 5003 6.823678 AGAACGTTTTTGACACTACACTAG 57.176 37.500 0.46 0.00 0.00 2.57
3683 5004 8.876275 ATAAGAACGTTTTTGACACTACACTA 57.124 30.769 13.87 0.00 0.00 2.74
3684 5005 7.781548 ATAAGAACGTTTTTGACACTACACT 57.218 32.000 13.87 0.00 0.00 3.55
3712 5033 9.654663 GGTCTACACATTAAAAGTTACTCTCAT 57.345 33.333 0.00 0.00 0.00 2.90
3713 5034 8.092687 GGGTCTACACATTAAAAGTTACTCTCA 58.907 37.037 0.00 0.00 0.00 3.27
3714 5035 7.548427 GGGGTCTACACATTAAAAGTTACTCTC 59.452 40.741 0.00 0.00 0.00 3.20
3715 5036 7.016858 TGGGGTCTACACATTAAAAGTTACTCT 59.983 37.037 0.00 0.00 0.00 3.24
3716 5037 7.163441 TGGGGTCTACACATTAAAAGTTACTC 58.837 38.462 0.00 0.00 0.00 2.59
3717 5038 7.081857 TGGGGTCTACACATTAAAAGTTACT 57.918 36.000 0.00 0.00 0.00 2.24
3718 5039 7.662669 TCTTGGGGTCTACACATTAAAAGTTAC 59.337 37.037 0.00 0.00 0.00 2.50
3738 5059 8.971073 AGACAATATAAAAGGACATTTCTTGGG 58.029 33.333 0.00 0.00 0.00 4.12
3749 5070 9.685276 ACAATCATCACAGACAATATAAAAGGA 57.315 29.630 0.00 0.00 0.00 3.36
3853 5174 6.276091 CCAGATTCGTATCATCAGAGAAACA 58.724 40.000 4.77 0.00 32.95 2.83
3880 5202 9.664332 AATATATTCAGAAGATACAGACATGGC 57.336 33.333 0.00 0.00 0.00 4.40
3906 5236 3.181445 ACATGGCACCTTCAAACTACTGA 60.181 43.478 0.00 0.00 0.00 3.41
3949 5279 2.228103 GGCGACACGGTAGATGATCATA 59.772 50.000 8.54 0.00 0.00 2.15
3950 5280 1.000163 GGCGACACGGTAGATGATCAT 60.000 52.381 8.25 8.25 0.00 2.45
3951 5281 0.384309 GGCGACACGGTAGATGATCA 59.616 55.000 0.00 0.00 0.00 2.92
3961 5291 1.661617 TCGAATATTTTGGCGACACGG 59.338 47.619 0.00 0.00 42.67 4.94
3979 5309 1.040339 ACAGAGCCTAGGAAGCCTCG 61.040 60.000 14.75 8.37 34.61 4.63
3983 5313 2.233922 TGTTACACAGAGCCTAGGAAGC 59.766 50.000 14.75 0.00 0.00 3.86
3987 5317 1.207329 GGGTGTTACACAGAGCCTAGG 59.793 57.143 17.67 3.67 35.86 3.02
3988 5318 1.207329 GGGGTGTTACACAGAGCCTAG 59.793 57.143 17.67 0.00 35.86 3.02
3989 5319 1.272807 GGGGTGTTACACAGAGCCTA 58.727 55.000 17.67 0.00 35.86 3.93
3990 5320 0.766674 TGGGGTGTTACACAGAGCCT 60.767 55.000 17.67 0.00 35.86 4.58
3991 5321 0.605589 GTGGGGTGTTACACAGAGCC 60.606 60.000 17.67 8.73 37.54 4.70
3992 5322 0.605589 GGTGGGGTGTTACACAGAGC 60.606 60.000 17.67 6.02 39.31 4.09
3993 5323 0.036306 GGGTGGGGTGTTACACAGAG 59.964 60.000 17.67 0.00 39.31 3.35
3994 5324 0.694783 TGGGTGGGGTGTTACACAGA 60.695 55.000 17.67 0.00 39.31 3.41
3995 5325 0.404040 ATGGGTGGGGTGTTACACAG 59.596 55.000 17.67 0.00 39.31 3.66
3996 5326 0.111446 CATGGGTGGGGTGTTACACA 59.889 55.000 17.67 0.00 39.31 3.72
4045 5375 2.742116 GGCCCATCTCGTAGCCCAA 61.742 63.158 0.00 0.00 39.60 4.12
4133 5464 7.005062 AGGTTAAAGACGATTCATTCATTCG 57.995 36.000 0.00 0.00 38.76 3.34
4152 5483 3.511477 AGAGCAGAGGAAGTGAAGGTTA 58.489 45.455 0.00 0.00 0.00 2.85
4160 5491 0.892063 GGAACGAGAGCAGAGGAAGT 59.108 55.000 0.00 0.00 0.00 3.01
4193 5524 5.938125 GCAAAAAGGAGGTGAGATACAGTAA 59.062 40.000 0.00 0.00 0.00 2.24
4212 5543 5.878406 TTTGGGGTGAGAAATTAGCAAAA 57.122 34.783 0.00 0.00 0.00 2.44
4287 5618 2.163815 ACCCAAGTACAGAGATCGAACG 59.836 50.000 0.00 0.00 0.00 3.95
4354 5685 1.523154 GAACAAATCACGGGGCAGCA 61.523 55.000 0.00 0.00 0.00 4.41
4378 5709 2.031069 CGATGGATGTTACCGATCGAGT 60.031 50.000 18.66 15.06 40.12 4.18
4402 5733 0.386858 TCGAAAGAAGTCGCACCGAG 60.387 55.000 0.00 0.00 40.88 4.63
4418 5749 2.298158 GATTTCAGGCGGCCTCTCGA 62.298 60.000 20.97 11.29 0.00 4.04
4476 5807 2.185310 GAGCGAGTGGTTGGGATGGT 62.185 60.000 0.00 0.00 0.00 3.55
4490 5821 1.888436 GAGGTGATGGGTGTGAGCGA 61.888 60.000 0.00 0.00 0.00 4.93
4491 5822 1.448540 GAGGTGATGGGTGTGAGCG 60.449 63.158 0.00 0.00 0.00 5.03
4492 5823 1.078143 GGAGGTGATGGGTGTGAGC 60.078 63.158 0.00 0.00 0.00 4.26
4493 5824 1.866015 TAGGAGGTGATGGGTGTGAG 58.134 55.000 0.00 0.00 0.00 3.51
4494 5825 2.398588 GATAGGAGGTGATGGGTGTGA 58.601 52.381 0.00 0.00 0.00 3.58
4495 5826 1.417890 GGATAGGAGGTGATGGGTGTG 59.582 57.143 0.00 0.00 0.00 3.82
4496 5827 1.009552 TGGATAGGAGGTGATGGGTGT 59.990 52.381 0.00 0.00 0.00 4.16
4497 5828 1.806496 TGGATAGGAGGTGATGGGTG 58.194 55.000 0.00 0.00 0.00 4.61
4498 5829 2.625639 GATGGATAGGAGGTGATGGGT 58.374 52.381 0.00 0.00 0.00 4.51
4499 5830 1.552337 CGATGGATAGGAGGTGATGGG 59.448 57.143 0.00 0.00 0.00 4.00
4500 5831 1.066573 GCGATGGATAGGAGGTGATGG 60.067 57.143 0.00 0.00 0.00 3.51
4501 5832 1.898472 AGCGATGGATAGGAGGTGATG 59.102 52.381 0.00 0.00 0.00 3.07
4502 5833 2.175202 GAGCGATGGATAGGAGGTGAT 58.825 52.381 0.00 0.00 0.00 3.06
4503 5834 1.133482 TGAGCGATGGATAGGAGGTGA 60.133 52.381 0.00 0.00 0.00 4.02
4504 5835 1.000283 GTGAGCGATGGATAGGAGGTG 60.000 57.143 0.00 0.00 0.00 4.00
4505 5836 1.333177 GTGAGCGATGGATAGGAGGT 58.667 55.000 0.00 0.00 0.00 3.85
4506 5837 1.000283 GTGTGAGCGATGGATAGGAGG 60.000 57.143 0.00 0.00 0.00 4.30
4507 5838 1.959985 AGTGTGAGCGATGGATAGGAG 59.040 52.381 0.00 0.00 0.00 3.69
4508 5839 1.957177 GAGTGTGAGCGATGGATAGGA 59.043 52.381 0.00 0.00 0.00 2.94
4509 5840 1.683385 TGAGTGTGAGCGATGGATAGG 59.317 52.381 0.00 0.00 0.00 2.57
4510 5841 3.005155 TGATGAGTGTGAGCGATGGATAG 59.995 47.826 0.00 0.00 0.00 2.08
4511 5842 2.958355 TGATGAGTGTGAGCGATGGATA 59.042 45.455 0.00 0.00 0.00 2.59
4512 5843 1.758862 TGATGAGTGTGAGCGATGGAT 59.241 47.619 0.00 0.00 0.00 3.41
4513 5844 1.134995 GTGATGAGTGTGAGCGATGGA 60.135 52.381 0.00 0.00 0.00 3.41
4514 5845 1.284657 GTGATGAGTGTGAGCGATGG 58.715 55.000 0.00 0.00 0.00 3.51
4515 5846 1.134877 AGGTGATGAGTGTGAGCGATG 60.135 52.381 0.00 0.00 0.00 3.84
4516 5847 1.135915 GAGGTGATGAGTGTGAGCGAT 59.864 52.381 0.00 0.00 0.00 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.