Multiple sequence alignment - TraesCS3D01G241300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G241300 chr3D 100.000 4075 0 0 1 4075 335205458 335209532 0.000000e+00 7526
1 TraesCS3D01G241300 chr3B 94.279 1276 51 10 2097 3355 433759484 433760754 0.000000e+00 1932
2 TraesCS3D01G241300 chr3B 86.335 1105 79 34 799 1861 433758144 433759218 0.000000e+00 1138
3 TraesCS3D01G241300 chr3B 81.923 780 61 34 3348 4075 433768086 433768837 1.630000e-163 586
4 TraesCS3D01G241300 chr3B 83.774 265 19 12 1818 2060 433759218 433759480 3.170000e-56 230
5 TraesCS3D01G241300 chr3B 80.198 202 10 14 605 788 433755018 433755207 1.540000e-24 124
6 TraesCS3D01G241300 chr3A 90.524 1488 66 27 611 2055 453306005 453307460 0.000000e+00 1897
7 TraesCS3D01G241300 chr3A 94.741 1236 35 9 2130 3357 453307475 453308688 0.000000e+00 1895
8 TraesCS3D01G241300 chr3A 84.615 468 48 14 3406 3858 453308684 453309142 1.040000e-120 444
9 TraesCS3D01G241300 chr3A 93.939 198 12 0 3878 4075 453309254 453309451 2.380000e-77 300
10 TraesCS3D01G241300 chr5B 74.775 333 70 14 2324 2649 670128964 670129289 1.980000e-28 137
11 TraesCS3D01G241300 chr4A 78.505 214 38 5 2324 2533 641382996 641382787 2.560000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G241300 chr3D 335205458 335209532 4074 False 7526 7526 100.00000 1 4075 1 chr3D.!!$F1 4074
1 TraesCS3D01G241300 chr3B 433755018 433760754 5736 False 856 1932 86.14650 605 3355 4 chr3B.!!$F2 2750
2 TraesCS3D01G241300 chr3B 433768086 433768837 751 False 586 586 81.92300 3348 4075 1 chr3B.!!$F1 727
3 TraesCS3D01G241300 chr3A 453306005 453309451 3446 False 1134 1897 90.95475 611 4075 4 chr3A.!!$F1 3464

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
106 107 0.034186 AATTCAGCCGCCAATCCAGA 60.034 50.0 0.00 0.00 0.0 3.86 F
2043 5115 0.030369 CGTATGTCTACACCGAGGCC 59.970 60.0 0.00 0.00 0.0 5.19 F
2354 5430 0.032678 CGAGGCTGAACACTGTGACT 59.967 55.0 15.86 0.44 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2083 5155 0.319900 ACTACTGTGACTTGCAGCGG 60.320 55.0 0.0 0.0 37.47 5.52 R
2990 6066 0.742281 TGCCGAGCATCTTGAGCTTC 60.742 55.0 0.0 0.0 43.58 3.86 R
3897 7150 1.515081 TTTCCTTTTACCGACGCTGG 58.485 50.0 0.0 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.251869 CAATGCATCGTCACCTGTTG 57.748 50.000 0.00 0.00 0.00 3.33
20 21 1.805943 CAATGCATCGTCACCTGTTGA 59.194 47.619 0.00 0.00 0.00 3.18
27 28 3.980583 GTCACCTGTTGACGGAGAA 57.019 52.632 0.00 0.00 45.33 2.87
28 29 1.499049 GTCACCTGTTGACGGAGAAC 58.501 55.000 0.00 0.00 45.33 3.01
29 30 2.192993 GTCACCTGTTGACGGAGAACG 61.193 57.143 0.00 0.00 45.33 3.95
38 39 3.562635 CGGAGAACGGCAAGGAAC 58.437 61.111 0.00 0.00 39.42 3.62
39 40 2.033194 CGGAGAACGGCAAGGAACC 61.033 63.158 0.00 0.00 39.42 3.62
48 49 3.423154 CAAGGAACCGCCGCAGTC 61.423 66.667 0.00 0.00 43.43 3.51
49 50 3.936203 AAGGAACCGCCGCAGTCA 61.936 61.111 0.00 0.00 43.43 3.41
50 51 3.469863 AAGGAACCGCCGCAGTCAA 62.470 57.895 0.00 0.00 43.43 3.18
51 52 3.723348 GGAACCGCCGCAGTCAAC 61.723 66.667 0.00 0.00 0.00 3.18
52 53 3.723348 GAACCGCCGCAGTCAACC 61.723 66.667 0.00 0.00 0.00 3.77
60 61 4.012895 GCAGTCAACCGCACCGTG 62.013 66.667 0.00 0.00 0.00 4.94
61 62 4.012895 CAGTCAACCGCACCGTGC 62.013 66.667 13.81 13.81 40.69 5.34
62 63 4.539083 AGTCAACCGCACCGTGCA 62.539 61.111 22.89 0.07 45.36 4.57
63 64 4.012895 GTCAACCGCACCGTGCAG 62.013 66.667 22.89 14.52 45.36 4.41
64 65 4.228567 TCAACCGCACCGTGCAGA 62.229 61.111 22.89 11.69 45.36 4.26
65 66 3.716006 CAACCGCACCGTGCAGAG 61.716 66.667 22.89 13.01 45.36 3.35
66 67 4.988598 AACCGCACCGTGCAGAGG 62.989 66.667 22.89 17.48 45.36 3.69
92 93 2.476772 CGTCCCGCCATCAAATTCA 58.523 52.632 0.00 0.00 0.00 2.57
93 94 0.378257 CGTCCCGCCATCAAATTCAG 59.622 55.000 0.00 0.00 0.00 3.02
94 95 0.101219 GTCCCGCCATCAAATTCAGC 59.899 55.000 0.00 0.00 0.00 4.26
95 96 1.037030 TCCCGCCATCAAATTCAGCC 61.037 55.000 0.00 0.00 0.00 4.85
96 97 1.064621 CCGCCATCAAATTCAGCCG 59.935 57.895 0.00 0.00 0.00 5.52
97 98 1.587088 CGCCATCAAATTCAGCCGC 60.587 57.895 0.00 0.00 0.00 6.53
98 99 1.227060 GCCATCAAATTCAGCCGCC 60.227 57.895 0.00 0.00 0.00 6.13
99 100 1.947597 GCCATCAAATTCAGCCGCCA 61.948 55.000 0.00 0.00 0.00 5.69
100 101 0.531657 CCATCAAATTCAGCCGCCAA 59.468 50.000 0.00 0.00 0.00 4.52
101 102 1.137479 CCATCAAATTCAGCCGCCAAT 59.863 47.619 0.00 0.00 0.00 3.16
102 103 2.466846 CATCAAATTCAGCCGCCAATC 58.533 47.619 0.00 0.00 0.00 2.67
103 104 0.817013 TCAAATTCAGCCGCCAATCC 59.183 50.000 0.00 0.00 0.00 3.01
104 105 0.531657 CAAATTCAGCCGCCAATCCA 59.468 50.000 0.00 0.00 0.00 3.41
105 106 0.819582 AAATTCAGCCGCCAATCCAG 59.180 50.000 0.00 0.00 0.00 3.86
106 107 0.034186 AATTCAGCCGCCAATCCAGA 60.034 50.000 0.00 0.00 0.00 3.86
107 108 0.184451 ATTCAGCCGCCAATCCAGAT 59.816 50.000 0.00 0.00 0.00 2.90
108 109 0.464373 TTCAGCCGCCAATCCAGATC 60.464 55.000 0.00 0.00 0.00 2.75
109 110 1.147824 CAGCCGCCAATCCAGATCT 59.852 57.895 0.00 0.00 0.00 2.75
110 111 1.147824 AGCCGCCAATCCAGATCTG 59.852 57.895 16.24 16.24 0.00 2.90
111 112 1.146930 GCCGCCAATCCAGATCTGA 59.853 57.895 24.62 10.55 0.00 3.27
112 113 1.162800 GCCGCCAATCCAGATCTGAC 61.163 60.000 24.62 5.21 0.00 3.51
113 114 0.533755 CCGCCAATCCAGATCTGACC 60.534 60.000 24.62 4.54 0.00 4.02
114 115 0.178767 CGCCAATCCAGATCTGACCA 59.821 55.000 24.62 7.82 0.00 4.02
115 116 1.673168 GCCAATCCAGATCTGACCAC 58.327 55.000 24.62 4.64 0.00 4.16
116 117 1.945387 CCAATCCAGATCTGACCACG 58.055 55.000 24.62 6.94 0.00 4.94
117 118 1.473965 CCAATCCAGATCTGACCACGG 60.474 57.143 24.62 13.02 0.00 4.94
118 119 0.179000 AATCCAGATCTGACCACGGC 59.821 55.000 24.62 0.00 0.00 5.68
119 120 0.689080 ATCCAGATCTGACCACGGCT 60.689 55.000 24.62 0.00 0.00 5.52
120 121 1.153489 CCAGATCTGACCACGGCTG 60.153 63.158 24.62 0.00 0.00 4.85
121 122 1.153489 CAGATCTGACCACGGCTGG 60.153 63.158 18.34 0.00 44.26 4.85
122 123 2.512515 GATCTGACCACGGCTGGC 60.513 66.667 0.00 0.00 42.08 4.85
123 124 4.101448 ATCTGACCACGGCTGGCC 62.101 66.667 0.00 0.00 42.08 5.36
127 128 4.101448 GACCACGGCTGGCCAGAT 62.101 66.667 37.21 17.76 42.08 2.90
128 129 4.101448 ACCACGGCTGGCCAGATC 62.101 66.667 37.21 24.38 42.08 2.75
129 130 4.864334 CCACGGCTGGCCAGATCC 62.864 72.222 37.21 26.27 35.37 3.36
130 131 4.100084 CACGGCTGGCCAGATCCA 62.100 66.667 37.21 0.00 35.37 3.41
131 132 3.329889 ACGGCTGGCCAGATCCAA 61.330 61.111 37.21 0.00 35.36 3.53
132 133 2.515523 CGGCTGGCCAGATCCAAG 60.516 66.667 37.21 15.09 35.36 3.61
133 134 2.123982 GGCTGGCCAGATCCAAGG 60.124 66.667 37.21 8.65 35.36 3.61
138 139 2.194326 GCCAGATCCAAGGCCTCC 59.806 66.667 5.23 0.00 45.18 4.30
139 140 2.922234 CCAGATCCAAGGCCTCCC 59.078 66.667 5.23 0.00 0.00 4.30
140 141 2.507944 CAGATCCAAGGCCTCCCG 59.492 66.667 5.23 0.00 35.76 5.14
141 142 3.483869 AGATCCAAGGCCTCCCGC 61.484 66.667 5.23 0.00 35.76 6.13
187 188 3.799753 GCACCGTGCTGACATAGG 58.200 61.111 16.51 0.00 40.96 2.57
188 189 1.815421 GCACCGTGCTGACATAGGG 60.815 63.158 16.51 0.00 40.96 3.53
189 190 1.153369 CACCGTGCTGACATAGGGG 60.153 63.158 4.30 0.00 32.58 4.79
190 191 1.305802 ACCGTGCTGACATAGGGGA 60.306 57.895 4.30 0.00 32.58 4.81
191 192 1.144057 CCGTGCTGACATAGGGGAC 59.856 63.158 0.00 0.00 0.00 4.46
192 193 1.613317 CCGTGCTGACATAGGGGACA 61.613 60.000 0.00 0.00 0.00 4.02
193 194 0.179100 CGTGCTGACATAGGGGACAG 60.179 60.000 0.00 0.00 0.00 3.51
194 195 1.195115 GTGCTGACATAGGGGACAGA 58.805 55.000 0.00 0.00 32.90 3.41
195 196 1.137872 GTGCTGACATAGGGGACAGAG 59.862 57.143 0.00 0.00 32.90 3.35
196 197 1.007118 TGCTGACATAGGGGACAGAGA 59.993 52.381 0.00 0.00 32.90 3.10
197 198 2.111384 GCTGACATAGGGGACAGAGAA 58.889 52.381 0.00 0.00 32.90 2.87
198 199 2.501723 GCTGACATAGGGGACAGAGAAA 59.498 50.000 0.00 0.00 32.90 2.52
199 200 3.680196 GCTGACATAGGGGACAGAGAAAC 60.680 52.174 0.00 0.00 32.90 2.78
200 201 2.496070 TGACATAGGGGACAGAGAAACG 59.504 50.000 0.00 0.00 0.00 3.60
201 202 1.207329 ACATAGGGGACAGAGAAACGC 59.793 52.381 0.00 0.00 0.00 4.84
202 203 0.831307 ATAGGGGACAGAGAAACGCC 59.169 55.000 0.00 0.00 36.99 5.68
203 204 1.601419 TAGGGGACAGAGAAACGCCG 61.601 60.000 0.00 0.00 40.69 6.46
204 205 3.119096 GGGACAGAGAAACGCCGC 61.119 66.667 0.00 0.00 0.00 6.53
205 206 3.119096 GGACAGAGAAACGCCGCC 61.119 66.667 0.00 0.00 0.00 6.13
206 207 3.119096 GACAGAGAAACGCCGCCC 61.119 66.667 0.00 0.00 0.00 6.13
207 208 3.591254 GACAGAGAAACGCCGCCCT 62.591 63.158 0.00 0.00 0.00 5.19
208 209 2.358737 CAGAGAAACGCCGCCCTT 60.359 61.111 0.00 0.00 0.00 3.95
209 210 2.358737 AGAGAAACGCCGCCCTTG 60.359 61.111 0.00 0.00 0.00 3.61
210 211 3.431725 GAGAAACGCCGCCCTTGG 61.432 66.667 0.00 0.00 0.00 3.61
220 221 3.313524 GCCCTTGGCCAAACCCAG 61.314 66.667 20.91 7.05 44.06 4.45
221 222 2.201210 CCCTTGGCCAAACCCAGT 59.799 61.111 20.91 0.00 37.83 4.00
222 223 1.459348 CCCTTGGCCAAACCCAGTT 60.459 57.895 20.91 0.00 37.83 3.16
223 224 1.747774 CCTTGGCCAAACCCAGTTG 59.252 57.895 20.91 4.80 37.83 3.16
224 225 1.069596 CTTGGCCAAACCCAGTTGC 59.930 57.895 20.91 0.00 37.83 4.17
225 226 1.684386 CTTGGCCAAACCCAGTTGCA 61.684 55.000 20.91 0.00 37.83 4.08
226 227 1.965754 TTGGCCAAACCCAGTTGCAC 61.966 55.000 17.98 0.00 37.83 4.57
227 228 2.421314 GCCAAACCCAGTTGCACC 59.579 61.111 0.00 0.00 0.00 5.01
228 229 2.727544 CCAAACCCAGTTGCACCG 59.272 61.111 0.00 0.00 0.00 4.94
229 230 2.027460 CAAACCCAGTTGCACCGC 59.973 61.111 0.00 0.00 0.00 5.68
230 231 2.441164 AAACCCAGTTGCACCGCA 60.441 55.556 0.00 0.00 36.47 5.69
231 232 2.489275 AAACCCAGTTGCACCGCAG 61.489 57.895 0.00 0.00 40.61 5.18
232 233 3.714487 AACCCAGTTGCACCGCAGT 62.714 57.895 0.00 0.00 40.61 4.40
253 254 4.312231 CACCTGCGCCAACGTGTG 62.312 66.667 4.18 0.00 42.83 3.82
299 300 3.264897 CGAGAAATGCGCCCCTCG 61.265 66.667 18.24 18.24 41.71 4.63
322 323 2.672996 GTGCCACGCCACCTCATT 60.673 61.111 0.00 0.00 0.00 2.57
323 324 2.672651 TGCCACGCCACCTCATTG 60.673 61.111 0.00 0.00 0.00 2.82
324 325 2.672996 GCCACGCCACCTCATTGT 60.673 61.111 0.00 0.00 0.00 2.71
325 326 2.690778 GCCACGCCACCTCATTGTC 61.691 63.158 0.00 0.00 0.00 3.18
326 327 2.390599 CCACGCCACCTCATTGTCG 61.391 63.158 0.00 0.00 0.00 4.35
327 328 2.742372 ACGCCACCTCATTGTCGC 60.742 61.111 0.00 0.00 0.00 5.19
328 329 2.434884 CGCCACCTCATTGTCGCT 60.435 61.111 0.00 0.00 0.00 4.93
329 330 2.456119 CGCCACCTCATTGTCGCTC 61.456 63.158 0.00 0.00 0.00 5.03
330 331 2.456119 GCCACCTCATTGTCGCTCG 61.456 63.158 0.00 0.00 0.00 5.03
331 332 2.456119 CCACCTCATTGTCGCTCGC 61.456 63.158 0.00 0.00 0.00 5.03
332 333 1.737735 CACCTCATTGTCGCTCGCA 60.738 57.895 0.00 0.00 0.00 5.10
333 334 1.086067 CACCTCATTGTCGCTCGCAT 61.086 55.000 0.00 0.00 0.00 4.73
334 335 0.391661 ACCTCATTGTCGCTCGCATT 60.392 50.000 0.00 0.00 0.00 3.56
335 336 0.302890 CCTCATTGTCGCTCGCATTC 59.697 55.000 0.00 0.00 0.00 2.67
336 337 1.001624 CTCATTGTCGCTCGCATTCA 58.998 50.000 0.00 0.00 0.00 2.57
337 338 1.394572 CTCATTGTCGCTCGCATTCAA 59.605 47.619 0.00 0.00 0.00 2.69
338 339 1.803555 TCATTGTCGCTCGCATTCAAA 59.196 42.857 0.00 0.00 0.00 2.69
339 340 1.906966 CATTGTCGCTCGCATTCAAAC 59.093 47.619 0.00 0.00 0.00 2.93
340 341 0.237235 TTGTCGCTCGCATTCAAACC 59.763 50.000 0.00 0.00 0.00 3.27
341 342 0.882484 TGTCGCTCGCATTCAAACCA 60.882 50.000 0.00 0.00 0.00 3.67
342 343 0.447801 GTCGCTCGCATTCAAACCAT 59.552 50.000 0.00 0.00 0.00 3.55
343 344 0.447406 TCGCTCGCATTCAAACCATG 59.553 50.000 0.00 0.00 0.00 3.66
344 345 0.168788 CGCTCGCATTCAAACCATGT 59.831 50.000 0.00 0.00 0.00 3.21
345 346 1.791555 CGCTCGCATTCAAACCATGTC 60.792 52.381 0.00 0.00 0.00 3.06
346 347 1.791555 GCTCGCATTCAAACCATGTCG 60.792 52.381 0.00 0.00 0.00 4.35
347 348 0.167908 TCGCATTCAAACCATGTCGC 59.832 50.000 0.00 0.00 0.00 5.19
348 349 0.798009 CGCATTCAAACCATGTCGCC 60.798 55.000 0.00 0.00 0.00 5.54
349 350 0.458370 GCATTCAAACCATGTCGCCC 60.458 55.000 0.00 0.00 0.00 6.13
350 351 1.176527 CATTCAAACCATGTCGCCCT 58.823 50.000 0.00 0.00 0.00 5.19
351 352 1.133025 CATTCAAACCATGTCGCCCTC 59.867 52.381 0.00 0.00 0.00 4.30
352 353 0.953471 TTCAAACCATGTCGCCCTCG 60.953 55.000 0.00 0.00 0.00 4.63
353 354 1.671054 CAAACCATGTCGCCCTCGT 60.671 57.895 0.00 0.00 36.96 4.18
354 355 1.375523 AAACCATGTCGCCCTCGTC 60.376 57.895 0.00 0.00 36.96 4.20
355 356 3.642778 AACCATGTCGCCCTCGTCG 62.643 63.158 0.00 0.00 36.96 5.12
435 436 4.664677 GCACACACGCCCGACTCT 62.665 66.667 0.00 0.00 0.00 3.24
436 437 2.430921 CACACACGCCCGACTCTC 60.431 66.667 0.00 0.00 0.00 3.20
437 438 4.039357 ACACACGCCCGACTCTCG 62.039 66.667 0.00 0.00 40.07 4.04
457 458 2.502093 CCACCCGCTGCCGTTATA 59.498 61.111 0.00 0.00 0.00 0.98
458 459 1.153329 CCACCCGCTGCCGTTATAA 60.153 57.895 0.00 0.00 0.00 0.98
459 460 0.534203 CCACCCGCTGCCGTTATAAT 60.534 55.000 0.00 0.00 0.00 1.28
460 461 0.586319 CACCCGCTGCCGTTATAATG 59.414 55.000 0.00 0.00 0.00 1.90
461 462 1.164041 ACCCGCTGCCGTTATAATGC 61.164 55.000 0.00 1.48 0.00 3.56
462 463 0.884704 CCCGCTGCCGTTATAATGCT 60.885 55.000 10.23 0.00 0.00 3.79
463 464 0.235665 CCGCTGCCGTTATAATGCTG 59.764 55.000 10.23 10.38 0.00 4.41
464 465 1.217001 CGCTGCCGTTATAATGCTGA 58.783 50.000 16.01 0.00 0.00 4.26
465 466 1.800586 CGCTGCCGTTATAATGCTGAT 59.199 47.619 16.01 0.00 0.00 2.90
466 467 2.159787 CGCTGCCGTTATAATGCTGATC 60.160 50.000 16.01 0.00 0.00 2.92
467 468 2.159787 GCTGCCGTTATAATGCTGATCG 60.160 50.000 16.01 2.80 0.00 3.69
468 469 3.317150 CTGCCGTTATAATGCTGATCGA 58.683 45.455 10.23 0.00 0.00 3.59
469 470 3.317150 TGCCGTTATAATGCTGATCGAG 58.683 45.455 10.23 0.00 0.00 4.04
470 471 3.005367 TGCCGTTATAATGCTGATCGAGA 59.995 43.478 10.23 0.00 0.00 4.04
471 472 3.987868 GCCGTTATAATGCTGATCGAGAA 59.012 43.478 0.00 0.00 0.00 2.87
472 473 4.143305 GCCGTTATAATGCTGATCGAGAAC 60.143 45.833 0.00 0.00 0.00 3.01
473 474 4.088638 CCGTTATAATGCTGATCGAGAACG 59.911 45.833 0.00 0.00 37.48 3.95
474 475 4.675565 CGTTATAATGCTGATCGAGAACGT 59.324 41.667 0.00 0.00 40.69 3.99
475 476 5.849604 CGTTATAATGCTGATCGAGAACGTA 59.150 40.000 0.00 0.00 40.69 3.57
476 477 6.031521 CGTTATAATGCTGATCGAGAACGTAG 59.968 42.308 0.00 0.00 40.69 3.51
495 496 7.352719 ACGTAGTTTCTTTTATCTGCAAGAG 57.647 36.000 0.00 0.00 45.34 2.85
496 497 6.929606 ACGTAGTTTCTTTTATCTGCAAGAGT 59.070 34.615 0.00 0.00 45.34 3.24
497 498 7.441458 ACGTAGTTTCTTTTATCTGCAAGAGTT 59.559 33.333 0.00 0.00 45.34 3.01
507 508 4.322080 TCTGCAAGAGTTTCTCGAGAAA 57.678 40.909 31.62 31.62 38.67 2.52
508 509 4.302455 TCTGCAAGAGTTTCTCGAGAAAG 58.698 43.478 34.83 24.66 40.62 2.62
509 510 4.054671 CTGCAAGAGTTTCTCGAGAAAGT 58.945 43.478 36.66 36.66 46.88 2.66
510 511 5.009710 TCTGCAAGAGTTTCTCGAGAAAGTA 59.990 40.000 36.29 24.13 44.95 2.24
511 512 5.597806 TGCAAGAGTTTCTCGAGAAAGTAA 58.402 37.500 36.29 21.70 44.95 2.24
512 513 6.223852 TGCAAGAGTTTCTCGAGAAAGTAAT 58.776 36.000 36.29 27.63 44.95 1.89
513 514 6.706270 TGCAAGAGTTTCTCGAGAAAGTAATT 59.294 34.615 36.29 30.38 44.95 1.40
514 515 7.226720 TGCAAGAGTTTCTCGAGAAAGTAATTT 59.773 33.333 36.29 28.17 44.95 1.82
515 516 7.742525 GCAAGAGTTTCTCGAGAAAGTAATTTC 59.257 37.037 36.29 26.24 44.95 2.17
516 517 8.765219 CAAGAGTTTCTCGAGAAAGTAATTTCA 58.235 33.333 36.29 15.47 44.95 2.69
517 518 8.888579 AGAGTTTCTCGAGAAAGTAATTTCAA 57.111 30.769 36.29 14.81 44.95 2.69
518 519 9.495572 AGAGTTTCTCGAGAAAGTAATTTCAAT 57.504 29.630 36.29 16.91 44.95 2.57
519 520 9.535270 GAGTTTCTCGAGAAAGTAATTTCAATG 57.465 33.333 36.29 6.89 44.95 2.82
520 521 8.507249 AGTTTCTCGAGAAAGTAATTTCAATGG 58.493 33.333 35.72 5.64 43.62 3.16
521 522 8.504005 GTTTCTCGAGAAAGTAATTTCAATGGA 58.496 33.333 34.83 10.45 43.82 3.41
522 523 7.834068 TCTCGAGAAAGTAATTTCAATGGAG 57.166 36.000 14.01 15.23 33.53 3.86
523 524 7.386851 TCTCGAGAAAGTAATTTCAATGGAGT 58.613 34.615 14.01 0.00 33.53 3.85
524 525 8.528643 TCTCGAGAAAGTAATTTCAATGGAGTA 58.471 33.333 14.01 6.11 33.53 2.59
525 526 9.319143 CTCGAGAAAGTAATTTCAATGGAGTAT 57.681 33.333 17.15 0.00 33.53 2.12
561 562 3.693807 ACATGTGAAATGAGCATGTCCT 58.306 40.909 0.00 0.00 46.93 3.85
562 563 3.442625 ACATGTGAAATGAGCATGTCCTG 59.557 43.478 0.00 0.00 46.93 3.86
563 564 3.421919 TGTGAAATGAGCATGTCCTGA 57.578 42.857 0.00 0.00 0.00 3.86
564 565 3.076621 TGTGAAATGAGCATGTCCTGAC 58.923 45.455 0.00 0.00 0.00 3.51
565 566 2.421424 GTGAAATGAGCATGTCCTGACC 59.579 50.000 0.00 0.00 0.00 4.02
566 567 1.667724 GAAATGAGCATGTCCTGACCG 59.332 52.381 0.00 0.00 0.00 4.79
567 568 0.904649 AATGAGCATGTCCTGACCGA 59.095 50.000 0.00 0.00 0.00 4.69
568 569 1.126488 ATGAGCATGTCCTGACCGAT 58.874 50.000 0.00 0.00 0.00 4.18
569 570 0.904649 TGAGCATGTCCTGACCGATT 59.095 50.000 0.00 0.00 0.00 3.34
570 571 1.293924 GAGCATGTCCTGACCGATTG 58.706 55.000 0.00 0.00 0.00 2.67
571 572 0.745845 AGCATGTCCTGACCGATTGC 60.746 55.000 0.00 0.17 0.00 3.56
572 573 0.745845 GCATGTCCTGACCGATTGCT 60.746 55.000 0.00 0.00 0.00 3.91
573 574 1.742761 CATGTCCTGACCGATTGCTT 58.257 50.000 0.00 0.00 0.00 3.91
574 575 2.086869 CATGTCCTGACCGATTGCTTT 58.913 47.619 0.00 0.00 0.00 3.51
575 576 2.270352 TGTCCTGACCGATTGCTTTT 57.730 45.000 0.00 0.00 0.00 2.27
576 577 3.410631 TGTCCTGACCGATTGCTTTTA 57.589 42.857 0.00 0.00 0.00 1.52
577 578 3.071479 TGTCCTGACCGATTGCTTTTAC 58.929 45.455 0.00 0.00 0.00 2.01
578 579 2.418976 GTCCTGACCGATTGCTTTTACC 59.581 50.000 0.00 0.00 0.00 2.85
579 580 1.743394 CCTGACCGATTGCTTTTACCC 59.257 52.381 0.00 0.00 0.00 3.69
580 581 1.396996 CTGACCGATTGCTTTTACCCG 59.603 52.381 0.00 0.00 0.00 5.28
581 582 0.730840 GACCGATTGCTTTTACCCGG 59.269 55.000 0.00 0.00 42.30 5.73
582 583 0.325602 ACCGATTGCTTTTACCCGGA 59.674 50.000 0.73 0.00 40.10 5.14
583 584 0.730840 CCGATTGCTTTTACCCGGAC 59.269 55.000 0.73 0.00 39.31 4.79
584 585 0.730840 CGATTGCTTTTACCCGGACC 59.269 55.000 0.73 0.00 0.00 4.46
585 586 0.730840 GATTGCTTTTACCCGGACCG 59.269 55.000 6.99 6.99 0.00 4.79
586 587 1.310216 ATTGCTTTTACCCGGACCGC 61.310 55.000 8.86 0.00 0.00 5.68
587 588 2.358984 GCTTTTACCCGGACCGCA 60.359 61.111 8.86 0.00 0.00 5.69
588 589 1.967494 GCTTTTACCCGGACCGCAA 60.967 57.895 8.86 0.00 0.00 4.85
589 590 1.517210 GCTTTTACCCGGACCGCAAA 61.517 55.000 8.86 5.43 0.00 3.68
590 591 0.953003 CTTTTACCCGGACCGCAAAA 59.047 50.000 8.86 12.68 0.00 2.44
591 592 0.667453 TTTTACCCGGACCGCAAAAC 59.333 50.000 8.86 0.00 0.00 2.43
592 593 1.171549 TTTACCCGGACCGCAAAACC 61.172 55.000 8.86 0.00 0.00 3.27
593 594 3.549900 TACCCGGACCGCAAAACCC 62.550 63.158 8.86 0.00 0.00 4.11
594 595 4.653888 CCCGGACCGCAAAACCCT 62.654 66.667 8.86 0.00 0.00 4.34
595 596 3.053896 CCGGACCGCAAAACCCTC 61.054 66.667 8.86 0.00 0.00 4.30
596 597 2.032071 CGGACCGCAAAACCCTCT 59.968 61.111 0.00 0.00 0.00 3.69
597 598 2.033194 CGGACCGCAAAACCCTCTC 61.033 63.158 0.00 0.00 0.00 3.20
598 599 1.072505 GGACCGCAAAACCCTCTCA 59.927 57.895 0.00 0.00 0.00 3.27
599 600 0.322546 GGACCGCAAAACCCTCTCAT 60.323 55.000 0.00 0.00 0.00 2.90
600 601 1.534729 GACCGCAAAACCCTCTCATT 58.465 50.000 0.00 0.00 0.00 2.57
601 602 2.617021 GGACCGCAAAACCCTCTCATTA 60.617 50.000 0.00 0.00 0.00 1.90
602 603 3.279434 GACCGCAAAACCCTCTCATTAT 58.721 45.455 0.00 0.00 0.00 1.28
603 604 3.016736 ACCGCAAAACCCTCTCATTATG 58.983 45.455 0.00 0.00 0.00 1.90
746 764 1.497161 AGTTAATGTCCCCCTCTCCG 58.503 55.000 0.00 0.00 0.00 4.63
821 3765 4.889807 TGGAACACCAAAGACCCG 57.110 55.556 0.00 0.00 0.00 5.28
839 3783 1.374758 GCTGACAAGTGGGTCTCCG 60.375 63.158 0.00 0.00 38.61 4.63
842 3786 0.469331 TGACAAGTGGGTCTCCGTCT 60.469 55.000 0.00 0.00 38.61 4.18
843 3787 1.202964 TGACAAGTGGGTCTCCGTCTA 60.203 52.381 0.00 0.00 38.61 2.59
891 3836 2.210116 GACTGTGAAACGAAGCCTTGA 58.790 47.619 0.00 0.00 42.39 3.02
976 3921 1.811679 GCGCAACCTCCTAGCAGAC 60.812 63.158 0.30 0.00 0.00 3.51
977 3922 1.153549 CGCAACCTCCTAGCAGACC 60.154 63.158 0.00 0.00 0.00 3.85
989 3934 2.617274 GCAGACCAGCACGAAACCC 61.617 63.158 0.00 0.00 0.00 4.11
1023 3968 1.442526 GGCTTCATCATGGAGCACCG 61.443 60.000 20.15 0.00 39.42 4.94
1024 3969 2.020131 CTTCATCATGGAGCACCGC 58.980 57.895 0.00 0.00 39.42 5.68
1074 4019 2.586245 CATGGAGGCCGAGAAGCA 59.414 61.111 0.00 0.00 0.00 3.91
1358 4303 3.096489 TGCCAACATTTTGCTCAACTC 57.904 42.857 0.00 0.00 0.00 3.01
1375 4320 6.604735 TCAACTCTTCTCTTTGTAACTTGC 57.395 37.500 0.00 0.00 0.00 4.01
1376 4321 6.112734 TCAACTCTTCTCTTTGTAACTTGCA 58.887 36.000 0.00 0.00 0.00 4.08
1377 4322 5.993106 ACTCTTCTCTTTGTAACTTGCAC 57.007 39.130 0.00 0.00 0.00 4.57
1395 4368 7.319646 ACTTGCACTACTTTTTGAAACATTCA 58.680 30.769 0.00 0.00 38.04 2.57
1438 4411 7.663493 GGTTCTTTTCCTTCAGCTGCTATATAT 59.337 37.037 9.47 0.00 0.00 0.86
1471 4444 4.559862 TTCTGTTTCCCTGAGAGGATTC 57.440 45.455 0.00 0.00 37.67 2.52
1488 4471 4.402155 AGGATTCTTGCTGTTGTTGTTTGA 59.598 37.500 0.00 0.00 0.00 2.69
1517 4500 1.000843 GGGTTGGATTTTGTGCTGTCC 59.999 52.381 0.00 0.00 0.00 4.02
1699 4688 5.473504 ACAAGAACCATGTCAAGGTATGAAC 59.526 40.000 0.00 0.00 40.50 3.18
1723 4712 7.707104 ACAACAAATCTTGAGTAACTTCCAAG 58.293 34.615 0.00 0.00 38.79 3.61
1751 4740 3.940209 TGCAAGGCTTTACCATCTTTG 57.060 42.857 0.00 0.00 43.14 2.77
1756 4745 6.014669 TGCAAGGCTTTACCATCTTTGTTTAT 60.015 34.615 0.00 0.00 43.14 1.40
1757 4746 7.177568 TGCAAGGCTTTACCATCTTTGTTTATA 59.822 33.333 0.00 0.00 43.14 0.98
1758 4747 7.702348 GCAAGGCTTTACCATCTTTGTTTATAG 59.298 37.037 0.00 0.00 43.14 1.31
1759 4748 8.956426 CAAGGCTTTACCATCTTTGTTTATAGA 58.044 33.333 0.00 0.00 43.14 1.98
1760 4749 8.507524 AGGCTTTACCATCTTTGTTTATAGAC 57.492 34.615 0.00 0.00 43.14 2.59
1761 4750 8.107095 AGGCTTTACCATCTTTGTTTATAGACA 58.893 33.333 0.00 0.00 43.14 3.41
1773 4771 9.868277 CTTTGTTTATAGACATTTATTTGGCCA 57.132 29.630 0.00 0.00 0.00 5.36
1781 4779 7.961326 AGACATTTATTTGGCCAGTAATCTT 57.039 32.000 5.11 0.00 0.00 2.40
1782 4780 8.366359 AGACATTTATTTGGCCAGTAATCTTT 57.634 30.769 5.11 0.00 0.00 2.52
1784 4782 7.906327 ACATTTATTTGGCCAGTAATCTTTGT 58.094 30.769 5.11 5.85 0.00 2.83
1786 4784 9.868277 CATTTATTTGGCCAGTAATCTTTGTTA 57.132 29.630 5.11 0.00 0.00 2.41
1792 4790 5.836358 TGGCCAGTAATCTTTGTTACCTTTT 59.164 36.000 0.00 0.00 35.62 2.27
1794 4792 7.506261 TGGCCAGTAATCTTTGTTACCTTTTTA 59.494 33.333 0.00 0.00 35.62 1.52
1795 4793 7.811236 GGCCAGTAATCTTTGTTACCTTTTTAC 59.189 37.037 0.00 0.00 35.62 2.01
1818 4816 7.617041 ACATGAGGTAAAGATGCTTACTTTC 57.383 36.000 0.00 1.35 38.34 2.62
1819 4817 7.398024 ACATGAGGTAAAGATGCTTACTTTCT 58.602 34.615 0.00 0.00 38.34 2.52
1820 4818 7.550906 ACATGAGGTAAAGATGCTTACTTTCTC 59.449 37.037 0.00 0.00 38.34 2.87
1863 4905 9.220767 AGAAACTACAAGATTTTGTGGAGTATC 57.779 33.333 17.68 10.05 45.56 2.24
1962 5016 5.319043 TCCAGGGGATAAATATTCACCAC 57.681 43.478 0.00 0.00 0.00 4.16
2043 5115 0.030369 CGTATGTCTACACCGAGGCC 59.970 60.000 0.00 0.00 0.00 5.19
2056 5128 2.526873 AGGCCCCGACAGTGTCTT 60.527 61.111 20.64 0.00 0.00 3.01
2061 5133 1.547372 GCCCCGACAGTGTCTTAGTTA 59.453 52.381 20.64 0.00 0.00 2.24
2062 5134 2.416972 GCCCCGACAGTGTCTTAGTTAG 60.417 54.545 20.64 3.61 0.00 2.34
2063 5135 2.416972 CCCCGACAGTGTCTTAGTTAGC 60.417 54.545 20.64 0.00 0.00 3.09
2064 5136 2.516923 CCGACAGTGTCTTAGTTAGCG 58.483 52.381 20.64 5.07 0.00 4.26
2065 5137 2.095364 CCGACAGTGTCTTAGTTAGCGT 60.095 50.000 20.64 0.00 0.00 5.07
2066 5138 3.562505 CGACAGTGTCTTAGTTAGCGTT 58.437 45.455 20.64 0.00 0.00 4.84
2067 5139 3.602915 CGACAGTGTCTTAGTTAGCGTTC 59.397 47.826 20.64 0.00 0.00 3.95
2068 5140 4.543692 GACAGTGTCTTAGTTAGCGTTCA 58.456 43.478 16.26 0.00 0.00 3.18
2069 5141 4.547532 ACAGTGTCTTAGTTAGCGTTCAG 58.452 43.478 0.00 0.00 0.00 3.02
2070 5142 4.277672 ACAGTGTCTTAGTTAGCGTTCAGA 59.722 41.667 0.00 0.00 0.00 3.27
2071 5143 4.617645 CAGTGTCTTAGTTAGCGTTCAGAC 59.382 45.833 0.00 0.00 32.81 3.51
2072 5144 4.277672 AGTGTCTTAGTTAGCGTTCAGACA 59.722 41.667 0.00 0.00 38.61 3.41
2073 5145 5.047943 AGTGTCTTAGTTAGCGTTCAGACAT 60.048 40.000 3.31 0.00 41.88 3.06
2074 5146 6.150641 AGTGTCTTAGTTAGCGTTCAGACATA 59.849 38.462 3.31 0.00 41.88 2.29
2075 5147 6.805271 GTGTCTTAGTTAGCGTTCAGACATAA 59.195 38.462 3.31 0.00 41.88 1.90
2076 5148 7.488471 GTGTCTTAGTTAGCGTTCAGACATAAT 59.512 37.037 3.31 0.00 41.88 1.28
2077 5149 8.680001 TGTCTTAGTTAGCGTTCAGACATAATA 58.320 33.333 0.00 0.00 36.57 0.98
2078 5150 9.512435 GTCTTAGTTAGCGTTCAGACATAATAA 57.488 33.333 0.00 0.00 32.52 1.40
2082 5154 8.062231 AGTTAGCGTTCAGACATAATAAATCG 57.938 34.615 0.00 0.00 0.00 3.34
2083 5155 5.330271 AGCGTTCAGACATAATAAATCGC 57.670 39.130 0.00 0.00 40.14 4.58
2084 5156 4.211374 AGCGTTCAGACATAATAAATCGCC 59.789 41.667 0.00 0.00 40.60 5.54
2085 5157 4.688063 CGTTCAGACATAATAAATCGCCG 58.312 43.478 0.00 0.00 0.00 6.46
2086 5158 4.455124 GTTCAGACATAATAAATCGCCGC 58.545 43.478 0.00 0.00 0.00 6.53
2087 5159 3.990092 TCAGACATAATAAATCGCCGCT 58.010 40.909 0.00 0.00 0.00 5.52
2088 5160 3.740832 TCAGACATAATAAATCGCCGCTG 59.259 43.478 0.00 0.00 0.00 5.18
2089 5161 2.480419 AGACATAATAAATCGCCGCTGC 59.520 45.455 0.00 0.00 0.00 5.25
2090 5162 2.217750 ACATAATAAATCGCCGCTGCA 58.782 42.857 0.00 0.00 37.32 4.41
2091 5163 2.616376 ACATAATAAATCGCCGCTGCAA 59.384 40.909 0.00 0.00 37.32 4.08
2092 5164 3.228749 CATAATAAATCGCCGCTGCAAG 58.771 45.455 0.00 0.00 37.32 4.01
2093 5165 1.094785 AATAAATCGCCGCTGCAAGT 58.905 45.000 0.00 0.00 37.32 3.16
2094 5166 0.657840 ATAAATCGCCGCTGCAAGTC 59.342 50.000 0.00 0.00 37.32 3.01
2095 5167 0.672091 TAAATCGCCGCTGCAAGTCA 60.672 50.000 0.00 0.00 37.32 3.41
2099 5171 2.974698 GCCGCTGCAAGTCACAGT 60.975 61.111 0.00 0.00 37.47 3.55
2162 5238 7.931578 ATTTTATTCGTGGGAATACTGTTGA 57.068 32.000 0.00 0.00 43.12 3.18
2249 5325 4.114794 CACTCACTGCGACATGATGATAA 58.885 43.478 0.00 0.00 0.00 1.75
2254 5330 4.807834 CACTGCGACATGATGATAACTCTT 59.192 41.667 0.00 0.00 0.00 2.85
2308 5384 3.560068 CGTGACAACTTTACTTTGCCTCT 59.440 43.478 0.00 0.00 0.00 3.69
2348 5424 1.005630 GCTGACGAGGCTGAACACT 60.006 57.895 0.00 0.00 0.00 3.55
2354 5430 0.032678 CGAGGCTGAACACTGTGACT 59.967 55.000 15.86 0.44 0.00 3.41
2921 5997 2.109181 GGCATGGACTCCTACGGC 59.891 66.667 0.00 0.00 0.00 5.68
3075 6151 3.196648 GCACCGGTGGCAATTAGG 58.803 61.111 34.58 7.61 0.00 2.69
3097 6176 1.339247 ACCACTGACCACGACAACAAA 60.339 47.619 0.00 0.00 0.00 2.83
3130 6209 9.542462 TCTCTACTTTATATAATGCGTGCTTTT 57.458 29.630 7.99 0.00 0.00 2.27
3150 6230 3.520290 TTTTCGTGTGTGAGTGAGTCT 57.480 42.857 0.00 0.00 0.00 3.24
3172 6252 4.647424 AGTTCTCCTCGAGATGATTCAC 57.353 45.455 15.71 6.88 38.56 3.18
3256 6339 3.817647 AGAGGACATGTTTTCTTCAGTGC 59.182 43.478 0.00 0.00 0.00 4.40
3286 6369 3.885724 TCACGAGATAGCCAAATGTGA 57.114 42.857 0.00 0.00 32.93 3.58
3346 6433 4.775236 AGAACCTTGATCATACTGGCTTC 58.225 43.478 0.00 4.61 0.00 3.86
3355 6442 9.770097 CTTGATCATACTGGCTTCTAGATTTTA 57.230 33.333 0.00 0.00 0.00 1.52
3383 6470 2.645297 TGGTGGGGTGCTTAATTGACTA 59.355 45.455 0.00 0.00 0.00 2.59
3393 6480 6.542370 GGTGCTTAATTGACTAGCCTTGATTA 59.458 38.462 0.00 0.00 34.03 1.75
3394 6481 7.229506 GGTGCTTAATTGACTAGCCTTGATTAT 59.770 37.037 0.00 0.00 34.03 1.28
3396 6483 9.845740 TGCTTAATTGACTAGCCTTGATTATTA 57.154 29.630 0.00 0.00 34.03 0.98
3464 6551 3.056328 GGAAGCCGGCACAACCTC 61.056 66.667 31.54 14.03 35.61 3.85
3476 6563 0.185901 ACAACCTCACCATGGCAACT 59.814 50.000 13.04 0.00 37.61 3.16
3477 6564 1.423541 ACAACCTCACCATGGCAACTA 59.576 47.619 13.04 0.00 37.61 2.24
3478 6565 1.812571 CAACCTCACCATGGCAACTAC 59.187 52.381 13.04 0.00 37.61 2.73
3479 6566 1.064003 ACCTCACCATGGCAACTACA 58.936 50.000 13.04 0.00 37.61 2.74
3480 6567 1.003580 ACCTCACCATGGCAACTACAG 59.996 52.381 13.04 0.00 37.61 2.74
3525 6653 8.299570 GCCTCATTATATTGGACAGGTTTATTG 58.700 37.037 0.00 0.00 0.00 1.90
3566 6698 8.495949 ACGAGCATTATTAAGCATGTAACATAC 58.504 33.333 0.00 0.00 0.00 2.39
3729 6876 5.071115 GGCTCCCATGAATATAGGATCCTAC 59.929 48.000 24.01 11.57 30.52 3.18
3733 6880 6.154534 TCCCATGAATATAGGATCCTACAACG 59.845 42.308 24.01 11.86 0.00 4.10
3734 6881 5.812642 CCATGAATATAGGATCCTACAACGC 59.187 44.000 24.01 12.49 0.00 4.84
3756 6903 3.999663 CCAAGTTCTCATTGTCAGAGTCC 59.000 47.826 0.00 0.00 34.73 3.85
3757 6904 3.584406 AGTTCTCATTGTCAGAGTCCG 57.416 47.619 0.00 0.00 34.73 4.79
3762 6912 0.390866 CATTGTCAGAGTCCGCAGCT 60.391 55.000 0.00 0.00 0.00 4.24
3778 6928 1.135859 CAGCTGTTTCGTGGAGCATTC 60.136 52.381 5.25 0.00 35.03 2.67
3795 6945 3.063452 GCATTCGCTTTCAGTATTTCGGA 59.937 43.478 0.00 0.00 34.30 4.55
3811 6961 0.391263 CGGAGGTGTTTAGCACTCCC 60.391 60.000 0.00 0.52 46.86 4.30
3816 6969 1.541670 GGTGTTTAGCACTCCCAACGA 60.542 52.381 0.00 0.00 46.86 3.85
3828 6981 2.673368 CTCCCAACGACTGCAGATAAAC 59.327 50.000 23.35 5.24 0.00 2.01
3870 7026 6.655003 CCTTAATTGCTAACCCGTATGATCAT 59.345 38.462 13.81 13.81 0.00 2.45
3897 7150 5.156608 TCAGTACTACACTAAAAAGGGGC 57.843 43.478 0.00 0.00 34.98 5.80
3900 7153 3.434940 ACTACACTAAAAAGGGGCCAG 57.565 47.619 4.39 0.00 0.00 4.85
4044 7297 7.340743 CCTCACCGATCTTCAGGATATACTAAT 59.659 40.741 0.00 0.00 34.33 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.805943 TCAACAGGTGACGATGCATTG 59.194 47.619 12.66 12.66 0.00 2.82
1 2 1.806542 GTCAACAGGTGACGATGCATT 59.193 47.619 1.91 0.00 46.99 3.56
2 3 1.442769 GTCAACAGGTGACGATGCAT 58.557 50.000 1.91 0.00 46.99 3.96
3 4 2.912986 GTCAACAGGTGACGATGCA 58.087 52.632 1.91 0.00 46.99 3.96
10 11 0.031585 CGTTCTCCGTCAACAGGTGA 59.968 55.000 0.00 0.00 0.00 4.02
11 12 0.944311 CCGTTCTCCGTCAACAGGTG 60.944 60.000 0.00 0.00 33.66 4.00
12 13 1.366366 CCGTTCTCCGTCAACAGGT 59.634 57.895 0.00 0.00 33.66 4.00
13 14 2.027625 GCCGTTCTCCGTCAACAGG 61.028 63.158 0.00 0.00 33.66 4.00
14 15 0.878523 TTGCCGTTCTCCGTCAACAG 60.879 55.000 0.00 0.00 28.03 3.16
15 16 0.878523 CTTGCCGTTCTCCGTCAACA 60.879 55.000 0.00 0.00 30.32 3.33
16 17 1.566018 CCTTGCCGTTCTCCGTCAAC 61.566 60.000 0.00 0.00 30.32 3.18
17 18 1.301401 CCTTGCCGTTCTCCGTCAA 60.301 57.895 0.00 0.00 32.86 3.18
18 19 1.750341 TTCCTTGCCGTTCTCCGTCA 61.750 55.000 0.00 0.00 33.66 4.35
19 20 1.005394 TTCCTTGCCGTTCTCCGTC 60.005 57.895 0.00 0.00 33.66 4.79
20 21 1.301479 GTTCCTTGCCGTTCTCCGT 60.301 57.895 0.00 0.00 33.66 4.69
21 22 2.033194 GGTTCCTTGCCGTTCTCCG 61.033 63.158 0.00 0.00 0.00 4.63
22 23 2.033194 CGGTTCCTTGCCGTTCTCC 61.033 63.158 0.00 0.00 43.84 3.71
23 24 3.562635 CGGTTCCTTGCCGTTCTC 58.437 61.111 0.00 0.00 43.84 2.87
31 32 3.423154 GACTGCGGCGGTTCCTTG 61.423 66.667 16.77 0.00 0.00 3.61
32 33 3.469863 TTGACTGCGGCGGTTCCTT 62.470 57.895 16.77 0.00 0.00 3.36
33 34 3.936203 TTGACTGCGGCGGTTCCT 61.936 61.111 16.77 0.00 0.00 3.36
34 35 3.723348 GTTGACTGCGGCGGTTCC 61.723 66.667 16.77 4.75 0.00 3.62
35 36 3.723348 GGTTGACTGCGGCGGTTC 61.723 66.667 16.77 9.81 0.00 3.62
44 45 4.012895 GCACGGTGCGGTTGACTG 62.013 66.667 18.35 0.00 31.71 3.51
75 76 0.101219 GCTGAATTTGATGGCGGGAC 59.899 55.000 0.00 0.00 0.00 4.46
76 77 1.037030 GGCTGAATTTGATGGCGGGA 61.037 55.000 0.00 0.00 0.00 5.14
77 78 1.438814 GGCTGAATTTGATGGCGGG 59.561 57.895 0.00 0.00 0.00 6.13
78 79 1.064621 CGGCTGAATTTGATGGCGG 59.935 57.895 0.00 0.00 43.17 6.13
79 80 4.696078 CGGCTGAATTTGATGGCG 57.304 55.556 0.00 0.00 41.56 5.69
80 81 1.227060 GGCGGCTGAATTTGATGGC 60.227 57.895 0.00 0.00 0.00 4.40
81 82 0.531657 TTGGCGGCTGAATTTGATGG 59.468 50.000 11.43 0.00 0.00 3.51
82 83 2.466846 GATTGGCGGCTGAATTTGATG 58.533 47.619 11.43 0.00 0.00 3.07
83 84 1.410153 GGATTGGCGGCTGAATTTGAT 59.590 47.619 11.43 0.00 0.00 2.57
84 85 0.817013 GGATTGGCGGCTGAATTTGA 59.183 50.000 11.43 0.00 0.00 2.69
85 86 0.531657 TGGATTGGCGGCTGAATTTG 59.468 50.000 11.43 0.00 0.00 2.32
86 87 0.819582 CTGGATTGGCGGCTGAATTT 59.180 50.000 11.43 0.00 0.00 1.82
87 88 0.034186 TCTGGATTGGCGGCTGAATT 60.034 50.000 11.43 0.00 0.00 2.17
88 89 0.184451 ATCTGGATTGGCGGCTGAAT 59.816 50.000 11.43 1.74 0.00 2.57
89 90 0.464373 GATCTGGATTGGCGGCTGAA 60.464 55.000 11.43 0.00 0.00 3.02
90 91 1.146930 GATCTGGATTGGCGGCTGA 59.853 57.895 11.43 0.00 0.00 4.26
91 92 1.147824 AGATCTGGATTGGCGGCTG 59.852 57.895 11.43 0.00 0.00 4.85
92 93 1.147824 CAGATCTGGATTGGCGGCT 59.852 57.895 15.38 0.00 0.00 5.52
93 94 1.146930 TCAGATCTGGATTGGCGGC 59.853 57.895 22.42 0.00 0.00 6.53
94 95 0.533755 GGTCAGATCTGGATTGGCGG 60.534 60.000 22.42 0.00 0.00 6.13
95 96 0.178767 TGGTCAGATCTGGATTGGCG 59.821 55.000 22.42 0.00 0.00 5.69
96 97 1.673168 GTGGTCAGATCTGGATTGGC 58.327 55.000 22.42 0.00 0.00 4.52
97 98 1.473965 CCGTGGTCAGATCTGGATTGG 60.474 57.143 22.42 13.76 0.00 3.16
98 99 1.945387 CCGTGGTCAGATCTGGATTG 58.055 55.000 22.42 9.00 0.00 2.67
99 100 0.179000 GCCGTGGTCAGATCTGGATT 59.821 55.000 22.42 0.00 0.00 3.01
100 101 0.689080 AGCCGTGGTCAGATCTGGAT 60.689 55.000 22.42 0.78 0.00 3.41
101 102 1.305297 AGCCGTGGTCAGATCTGGA 60.305 57.895 22.42 6.81 0.00 3.86
102 103 1.153489 CAGCCGTGGTCAGATCTGG 60.153 63.158 22.42 6.52 0.00 3.86
103 104 1.153489 CCAGCCGTGGTCAGATCTG 60.153 63.158 17.07 17.07 39.30 2.90
104 105 3.023949 GCCAGCCGTGGTCAGATCT 62.024 63.158 0.00 0.00 46.96 2.75
105 106 2.512515 GCCAGCCGTGGTCAGATC 60.513 66.667 0.00 0.00 46.96 2.75
111 112 4.101448 GATCTGGCCAGCCGTGGT 62.101 66.667 28.91 0.00 46.96 4.16
113 114 3.626996 TTGGATCTGGCCAGCCGTG 62.627 63.158 28.91 5.03 39.52 4.94
114 115 3.329889 TTGGATCTGGCCAGCCGT 61.330 61.111 28.91 16.06 39.52 5.68
115 116 2.515523 CTTGGATCTGGCCAGCCG 60.516 66.667 28.91 5.92 39.52 5.52
116 117 2.123982 CCTTGGATCTGGCCAGCC 60.124 66.667 28.91 23.72 39.52 4.85
117 118 2.832201 GCCTTGGATCTGGCCAGC 60.832 66.667 28.91 14.98 43.11 4.85
122 123 2.922234 GGGAGGCCTTGGATCTGG 59.078 66.667 6.77 0.00 0.00 3.86
123 124 2.507944 CGGGAGGCCTTGGATCTG 59.492 66.667 6.77 0.00 0.00 2.90
124 125 3.483869 GCGGGAGGCCTTGGATCT 61.484 66.667 6.77 0.00 34.80 2.75
170 171 1.815421 CCCTATGTCAGCACGGTGC 60.815 63.158 25.00 25.00 45.46 5.01
171 172 1.153369 CCCCTATGTCAGCACGGTG 60.153 63.158 3.15 3.15 0.00 4.94
172 173 1.305802 TCCCCTATGTCAGCACGGT 60.306 57.895 0.00 0.00 0.00 4.83
173 174 1.144057 GTCCCCTATGTCAGCACGG 59.856 63.158 0.00 0.00 0.00 4.94
174 175 0.179100 CTGTCCCCTATGTCAGCACG 60.179 60.000 0.00 0.00 0.00 5.34
175 176 1.137872 CTCTGTCCCCTATGTCAGCAC 59.862 57.143 0.00 0.00 0.00 4.40
176 177 1.007118 TCTCTGTCCCCTATGTCAGCA 59.993 52.381 0.00 0.00 0.00 4.41
177 178 1.781786 TCTCTGTCCCCTATGTCAGC 58.218 55.000 0.00 0.00 0.00 4.26
178 179 3.429547 CGTTTCTCTGTCCCCTATGTCAG 60.430 52.174 0.00 0.00 0.00 3.51
179 180 2.496070 CGTTTCTCTGTCCCCTATGTCA 59.504 50.000 0.00 0.00 0.00 3.58
180 181 2.738964 GCGTTTCTCTGTCCCCTATGTC 60.739 54.545 0.00 0.00 0.00 3.06
181 182 1.207329 GCGTTTCTCTGTCCCCTATGT 59.793 52.381 0.00 0.00 0.00 2.29
182 183 1.473434 GGCGTTTCTCTGTCCCCTATG 60.473 57.143 0.00 0.00 0.00 2.23
183 184 0.831307 GGCGTTTCTCTGTCCCCTAT 59.169 55.000 0.00 0.00 0.00 2.57
184 185 1.601419 CGGCGTTTCTCTGTCCCCTA 61.601 60.000 0.00 0.00 0.00 3.53
185 186 2.943978 CGGCGTTTCTCTGTCCCCT 61.944 63.158 0.00 0.00 0.00 4.79
186 187 2.434359 CGGCGTTTCTCTGTCCCC 60.434 66.667 0.00 0.00 0.00 4.81
187 188 3.119096 GCGGCGTTTCTCTGTCCC 61.119 66.667 9.37 0.00 0.00 4.46
188 189 3.119096 GGCGGCGTTTCTCTGTCC 61.119 66.667 9.37 0.00 0.00 4.02
189 190 3.119096 GGGCGGCGTTTCTCTGTC 61.119 66.667 9.37 0.00 0.00 3.51
190 191 3.178540 AAGGGCGGCGTTTCTCTGT 62.179 57.895 11.48 0.00 0.00 3.41
191 192 2.358737 AAGGGCGGCGTTTCTCTG 60.359 61.111 11.48 0.00 0.00 3.35
192 193 2.358737 CAAGGGCGGCGTTTCTCT 60.359 61.111 14.75 0.00 0.00 3.10
193 194 3.431725 CCAAGGGCGGCGTTTCTC 61.432 66.667 14.75 0.00 0.00 2.87
204 205 1.459348 AACTGGGTTTGGCCAAGGG 60.459 57.895 19.48 10.43 42.90 3.95
205 206 1.747774 CAACTGGGTTTGGCCAAGG 59.252 57.895 19.48 10.10 42.90 3.61
206 207 1.069596 GCAACTGGGTTTGGCCAAG 59.930 57.895 19.48 9.23 44.25 3.61
207 208 1.687146 TGCAACTGGGTTTGGCCAA 60.687 52.632 16.05 16.05 39.65 4.52
208 209 2.042537 TGCAACTGGGTTTGGCCA 60.043 55.556 0.00 0.00 39.65 5.36
209 210 2.421314 GTGCAACTGGGTTTGGCC 59.579 61.111 0.00 0.00 0.00 5.36
210 211 2.421314 GGTGCAACTGGGTTTGGC 59.579 61.111 0.00 0.00 36.74 4.52
211 212 2.727544 CGGTGCAACTGGGTTTGG 59.272 61.111 0.00 0.00 40.35 3.28
212 213 2.027460 GCGGTGCAACTGGGTTTG 59.973 61.111 0.00 0.00 45.56 2.93
213 214 2.441164 TGCGGTGCAACTGGGTTT 60.441 55.556 0.00 0.00 45.56 3.27
214 215 2.906897 CTGCGGTGCAACTGGGTT 60.907 61.111 0.00 0.00 45.56 4.11
215 216 4.189580 ACTGCGGTGCAACTGGGT 62.190 61.111 0.00 0.00 45.56 4.51
216 217 3.663176 CACTGCGGTGCAACTGGG 61.663 66.667 13.81 0.00 45.56 4.45
236 237 4.312231 CACACGTTGGCGCAGGTG 62.312 66.667 10.83 14.27 42.83 4.00
276 277 4.543084 GCGCATTTCTCGCCTGGC 62.543 66.667 9.11 9.11 46.18 4.85
282 283 3.264897 CGAGGGGCGCATTTCTCG 61.265 66.667 20.08 20.08 42.09 4.04
305 306 2.672996 AATGAGGTGGCGTGGCAC 60.673 61.111 17.31 17.31 0.00 5.01
306 307 2.672651 CAATGAGGTGGCGTGGCA 60.673 61.111 0.00 0.00 0.00 4.92
307 308 2.672996 ACAATGAGGTGGCGTGGC 60.673 61.111 0.00 0.00 0.00 5.01
308 309 2.390599 CGACAATGAGGTGGCGTGG 61.391 63.158 0.00 0.00 45.25 4.94
309 310 3.168271 CGACAATGAGGTGGCGTG 58.832 61.111 0.00 0.00 45.25 5.34
312 313 2.456119 CGAGCGACAATGAGGTGGC 61.456 63.158 0.00 0.00 42.05 5.01
313 314 2.456119 GCGAGCGACAATGAGGTGG 61.456 63.158 0.00 0.00 0.00 4.61
314 315 1.086067 ATGCGAGCGACAATGAGGTG 61.086 55.000 0.00 0.00 0.00 4.00
315 316 0.391661 AATGCGAGCGACAATGAGGT 60.392 50.000 0.00 0.00 0.00 3.85
316 317 0.302890 GAATGCGAGCGACAATGAGG 59.697 55.000 0.00 0.00 0.00 3.86
317 318 1.001624 TGAATGCGAGCGACAATGAG 58.998 50.000 0.00 0.00 0.00 2.90
318 319 1.437625 TTGAATGCGAGCGACAATGA 58.562 45.000 0.00 0.00 0.00 2.57
319 320 1.906966 GTTTGAATGCGAGCGACAATG 59.093 47.619 0.00 0.00 0.00 2.82
320 321 1.135689 GGTTTGAATGCGAGCGACAAT 60.136 47.619 0.00 0.00 0.00 2.71
321 322 0.237235 GGTTTGAATGCGAGCGACAA 59.763 50.000 0.00 0.00 0.00 3.18
322 323 0.882484 TGGTTTGAATGCGAGCGACA 60.882 50.000 0.00 0.00 0.00 4.35
323 324 0.447801 ATGGTTTGAATGCGAGCGAC 59.552 50.000 0.00 0.00 0.00 5.19
324 325 0.447406 CATGGTTTGAATGCGAGCGA 59.553 50.000 0.00 0.00 0.00 4.93
325 326 0.168788 ACATGGTTTGAATGCGAGCG 59.831 50.000 0.00 0.00 0.00 5.03
326 327 1.791555 CGACATGGTTTGAATGCGAGC 60.792 52.381 0.00 0.00 30.99 5.03
327 328 1.791555 GCGACATGGTTTGAATGCGAG 60.792 52.381 0.00 0.00 30.99 5.03
328 329 0.167908 GCGACATGGTTTGAATGCGA 59.832 50.000 0.00 0.00 30.99 5.10
329 330 0.798009 GGCGACATGGTTTGAATGCG 60.798 55.000 0.00 0.00 0.00 4.73
330 331 0.458370 GGGCGACATGGTTTGAATGC 60.458 55.000 0.00 0.00 0.00 3.56
331 332 1.133025 GAGGGCGACATGGTTTGAATG 59.867 52.381 0.00 0.00 0.00 2.67
332 333 1.463674 GAGGGCGACATGGTTTGAAT 58.536 50.000 0.00 0.00 0.00 2.57
333 334 0.953471 CGAGGGCGACATGGTTTGAA 60.953 55.000 0.00 0.00 40.82 2.69
334 335 1.375396 CGAGGGCGACATGGTTTGA 60.375 57.895 0.00 0.00 40.82 2.69
335 336 1.635663 GACGAGGGCGACATGGTTTG 61.636 60.000 0.00 0.00 41.64 2.93
336 337 1.375523 GACGAGGGCGACATGGTTT 60.376 57.895 0.00 0.00 41.64 3.27
337 338 2.264794 GACGAGGGCGACATGGTT 59.735 61.111 0.00 0.00 41.64 3.67
338 339 4.129737 CGACGAGGGCGACATGGT 62.130 66.667 0.00 0.00 41.64 3.55
418 419 4.664677 AGAGTCGGGCGTGTGTGC 62.665 66.667 0.00 0.00 0.00 4.57
419 420 2.430921 GAGAGTCGGGCGTGTGTG 60.431 66.667 0.00 0.00 0.00 3.82
420 421 4.039357 CGAGAGTCGGGCGTGTGT 62.039 66.667 0.00 0.00 36.00 3.72
440 441 0.534203 ATTATAACGGCAGCGGGTGG 60.534 55.000 9.49 0.00 0.00 4.61
441 442 0.586319 CATTATAACGGCAGCGGGTG 59.414 55.000 0.00 2.14 0.00 4.61
442 443 1.164041 GCATTATAACGGCAGCGGGT 61.164 55.000 4.79 0.00 0.00 5.28
443 444 0.884704 AGCATTATAACGGCAGCGGG 60.885 55.000 12.09 0.00 0.00 6.13
444 445 0.235665 CAGCATTATAACGGCAGCGG 59.764 55.000 12.09 0.00 0.00 5.52
445 446 1.217001 TCAGCATTATAACGGCAGCG 58.783 50.000 12.09 0.00 0.00 5.18
446 447 2.159787 CGATCAGCATTATAACGGCAGC 60.160 50.000 12.09 0.00 0.00 5.25
447 448 3.317150 TCGATCAGCATTATAACGGCAG 58.683 45.455 12.09 5.63 0.00 4.85
448 449 3.005367 TCTCGATCAGCATTATAACGGCA 59.995 43.478 12.09 0.00 0.00 5.69
449 450 3.575630 TCTCGATCAGCATTATAACGGC 58.424 45.455 3.36 3.36 0.00 5.68
450 451 4.088638 CGTTCTCGATCAGCATTATAACGG 59.911 45.833 0.00 0.00 39.71 4.44
451 452 4.675565 ACGTTCTCGATCAGCATTATAACG 59.324 41.667 0.00 0.00 41.94 3.18
452 453 6.856938 ACTACGTTCTCGATCAGCATTATAAC 59.143 38.462 0.00 0.00 40.62 1.89
453 454 6.967135 ACTACGTTCTCGATCAGCATTATAA 58.033 36.000 0.00 0.00 40.62 0.98
454 455 6.555812 ACTACGTTCTCGATCAGCATTATA 57.444 37.500 0.00 0.00 40.62 0.98
455 456 5.440234 ACTACGTTCTCGATCAGCATTAT 57.560 39.130 0.00 0.00 40.62 1.28
456 457 4.895224 ACTACGTTCTCGATCAGCATTA 57.105 40.909 0.00 0.00 40.62 1.90
457 458 3.784701 ACTACGTTCTCGATCAGCATT 57.215 42.857 0.00 0.00 40.62 3.56
458 459 3.784701 AACTACGTTCTCGATCAGCAT 57.215 42.857 0.00 0.00 40.62 3.79
459 460 3.190744 AGAAACTACGTTCTCGATCAGCA 59.809 43.478 0.00 0.00 40.62 4.41
460 461 3.760537 AGAAACTACGTTCTCGATCAGC 58.239 45.455 0.00 0.00 40.62 4.26
461 462 6.692232 AAAAGAAACTACGTTCTCGATCAG 57.308 37.500 0.00 0.00 36.84 2.90
462 463 8.242053 AGATAAAAGAAACTACGTTCTCGATCA 58.758 33.333 0.00 0.00 36.84 2.92
463 464 8.525071 CAGATAAAAGAAACTACGTTCTCGATC 58.475 37.037 0.00 0.00 36.84 3.69
464 465 7.009357 GCAGATAAAAGAAACTACGTTCTCGAT 59.991 37.037 0.00 0.00 36.84 3.59
465 466 6.307318 GCAGATAAAAGAAACTACGTTCTCGA 59.693 38.462 0.00 0.00 36.84 4.04
466 467 6.089016 TGCAGATAAAAGAAACTACGTTCTCG 59.911 38.462 0.00 0.00 36.84 4.04
467 468 7.347508 TGCAGATAAAAGAAACTACGTTCTC 57.652 36.000 0.00 0.00 36.84 2.87
468 469 7.656137 TCTTGCAGATAAAAGAAACTACGTTCT 59.344 33.333 0.00 0.00 39.60 3.01
469 470 7.793902 TCTTGCAGATAAAAGAAACTACGTTC 58.206 34.615 0.00 0.00 29.59 3.95
470 471 7.441458 ACTCTTGCAGATAAAAGAAACTACGTT 59.559 33.333 0.00 0.00 32.23 3.99
471 472 6.929606 ACTCTTGCAGATAAAAGAAACTACGT 59.070 34.615 0.00 0.00 32.23 3.57
472 473 7.352719 ACTCTTGCAGATAAAAGAAACTACG 57.647 36.000 0.00 0.00 32.23 3.51
473 474 9.600646 GAAACTCTTGCAGATAAAAGAAACTAC 57.399 33.333 0.00 0.00 32.23 2.73
474 475 9.561069 AGAAACTCTTGCAGATAAAAGAAACTA 57.439 29.630 0.00 0.00 32.23 2.24
475 476 8.457238 AGAAACTCTTGCAGATAAAAGAAACT 57.543 30.769 0.00 0.00 32.23 2.66
476 477 7.532209 CGAGAAACTCTTGCAGATAAAAGAAAC 59.468 37.037 0.00 0.00 32.23 2.78
477 478 7.441157 TCGAGAAACTCTTGCAGATAAAAGAAA 59.559 33.333 0.00 0.00 32.23 2.52
478 479 6.929049 TCGAGAAACTCTTGCAGATAAAAGAA 59.071 34.615 0.00 0.00 32.23 2.52
479 480 6.455647 TCGAGAAACTCTTGCAGATAAAAGA 58.544 36.000 0.00 0.00 0.00 2.52
480 481 6.587990 TCTCGAGAAACTCTTGCAGATAAAAG 59.412 38.462 14.01 0.00 0.00 2.27
481 482 6.455647 TCTCGAGAAACTCTTGCAGATAAAA 58.544 36.000 14.01 0.00 0.00 1.52
482 483 6.025749 TCTCGAGAAACTCTTGCAGATAAA 57.974 37.500 14.01 0.00 0.00 1.40
483 484 5.644977 TCTCGAGAAACTCTTGCAGATAA 57.355 39.130 14.01 0.00 0.00 1.75
484 485 5.644977 TTCTCGAGAAACTCTTGCAGATA 57.355 39.130 25.19 0.00 0.00 1.98
485 486 4.527509 TTCTCGAGAAACTCTTGCAGAT 57.472 40.909 25.19 0.00 0.00 2.90
486 487 4.202161 ACTTTCTCGAGAAACTCTTGCAGA 60.202 41.667 31.62 11.79 38.94 4.26
487 488 4.054671 ACTTTCTCGAGAAACTCTTGCAG 58.945 43.478 31.62 22.49 38.94 4.41
488 489 4.060038 ACTTTCTCGAGAAACTCTTGCA 57.940 40.909 31.62 13.14 38.94 4.08
489 490 6.713792 ATTACTTTCTCGAGAAACTCTTGC 57.286 37.500 31.62 0.00 38.94 4.01
490 491 8.765219 TGAAATTACTTTCTCGAGAAACTCTTG 58.235 33.333 31.62 24.03 41.18 3.02
491 492 8.888579 TGAAATTACTTTCTCGAGAAACTCTT 57.111 30.769 31.62 20.57 41.18 2.85
492 493 8.888579 TTGAAATTACTTTCTCGAGAAACTCT 57.111 30.769 31.62 20.18 41.18 3.24
493 494 9.535270 CATTGAAATTACTTTCTCGAGAAACTC 57.465 33.333 31.62 20.65 41.18 3.01
494 495 8.507249 CCATTGAAATTACTTTCTCGAGAAACT 58.493 33.333 31.62 25.00 41.18 2.66
495 496 8.504005 TCCATTGAAATTACTTTCTCGAGAAAC 58.496 33.333 31.62 21.43 41.18 2.78
496 497 8.615878 TCCATTGAAATTACTTTCTCGAGAAA 57.384 30.769 32.51 32.51 41.18 2.52
497 498 7.878127 ACTCCATTGAAATTACTTTCTCGAGAA 59.122 33.333 23.74 23.74 41.18 2.87
498 499 7.386851 ACTCCATTGAAATTACTTTCTCGAGA 58.613 34.615 12.08 12.08 41.18 4.04
499 500 7.602517 ACTCCATTGAAATTACTTTCTCGAG 57.397 36.000 5.93 5.93 41.18 4.04
541 542 3.692593 TCAGGACATGCTCATTTCACATG 59.307 43.478 0.00 0.00 45.28 3.21
542 543 3.693085 GTCAGGACATGCTCATTTCACAT 59.307 43.478 0.00 0.00 0.00 3.21
543 544 3.076621 GTCAGGACATGCTCATTTCACA 58.923 45.455 0.00 0.00 0.00 3.58
544 545 2.421424 GGTCAGGACATGCTCATTTCAC 59.579 50.000 1.41 0.00 0.00 3.18
545 546 2.715046 GGTCAGGACATGCTCATTTCA 58.285 47.619 1.41 0.00 0.00 2.69
546 547 1.667724 CGGTCAGGACATGCTCATTTC 59.332 52.381 1.41 0.00 0.00 2.17
547 548 1.278985 TCGGTCAGGACATGCTCATTT 59.721 47.619 1.41 0.00 0.00 2.32
548 549 0.904649 TCGGTCAGGACATGCTCATT 59.095 50.000 1.41 0.00 0.00 2.57
549 550 1.126488 ATCGGTCAGGACATGCTCAT 58.874 50.000 1.41 0.00 0.00 2.90
550 551 0.904649 AATCGGTCAGGACATGCTCA 59.095 50.000 1.41 0.00 0.00 4.26
551 552 1.293924 CAATCGGTCAGGACATGCTC 58.706 55.000 1.41 0.00 0.00 4.26
552 553 0.745845 GCAATCGGTCAGGACATGCT 60.746 55.000 1.41 0.00 0.00 3.79
553 554 0.745845 AGCAATCGGTCAGGACATGC 60.746 55.000 1.41 6.27 0.00 4.06
554 555 1.742761 AAGCAATCGGTCAGGACATG 58.257 50.000 1.41 0.00 0.00 3.21
555 556 2.496899 AAAGCAATCGGTCAGGACAT 57.503 45.000 1.41 0.00 0.00 3.06
556 557 2.270352 AAAAGCAATCGGTCAGGACA 57.730 45.000 1.41 0.00 0.00 4.02
557 558 2.418976 GGTAAAAGCAATCGGTCAGGAC 59.581 50.000 0.00 0.00 0.00 3.85
558 559 2.617021 GGGTAAAAGCAATCGGTCAGGA 60.617 50.000 0.00 0.00 0.00 3.86
559 560 1.743394 GGGTAAAAGCAATCGGTCAGG 59.257 52.381 0.00 0.00 0.00 3.86
560 561 1.396996 CGGGTAAAAGCAATCGGTCAG 59.603 52.381 0.00 0.00 0.00 3.51
561 562 1.444836 CGGGTAAAAGCAATCGGTCA 58.555 50.000 0.00 0.00 0.00 4.02
562 563 0.730840 CCGGGTAAAAGCAATCGGTC 59.269 55.000 0.00 0.00 33.63 4.79
563 564 0.325602 TCCGGGTAAAAGCAATCGGT 59.674 50.000 0.00 0.00 38.70 4.69
564 565 0.730840 GTCCGGGTAAAAGCAATCGG 59.269 55.000 0.00 0.00 38.92 4.18
565 566 0.730840 GGTCCGGGTAAAAGCAATCG 59.269 55.000 0.00 0.00 0.00 3.34
566 567 0.730840 CGGTCCGGGTAAAAGCAATC 59.269 55.000 2.34 0.00 0.00 2.67
567 568 1.310216 GCGGTCCGGGTAAAAGCAAT 61.310 55.000 14.38 0.00 0.00 3.56
568 569 1.967494 GCGGTCCGGGTAAAAGCAA 60.967 57.895 14.38 0.00 0.00 3.91
569 570 2.358984 GCGGTCCGGGTAAAAGCA 60.359 61.111 14.38 0.00 0.00 3.91
570 571 1.517210 TTTGCGGTCCGGGTAAAAGC 61.517 55.000 14.38 0.00 0.00 3.51
571 572 0.953003 TTTTGCGGTCCGGGTAAAAG 59.047 50.000 14.38 0.00 0.00 2.27
572 573 0.667453 GTTTTGCGGTCCGGGTAAAA 59.333 50.000 14.38 0.97 0.00 1.52
573 574 1.171549 GGTTTTGCGGTCCGGGTAAA 61.172 55.000 14.38 0.00 0.00 2.01
574 575 1.600356 GGTTTTGCGGTCCGGGTAA 60.600 57.895 14.38 0.00 0.00 2.85
575 576 2.032376 GGTTTTGCGGTCCGGGTA 59.968 61.111 14.38 0.00 0.00 3.69
576 577 4.960866 GGGTTTTGCGGTCCGGGT 62.961 66.667 14.38 0.00 0.00 5.28
577 578 4.653888 AGGGTTTTGCGGTCCGGG 62.654 66.667 14.38 0.00 0.00 5.73
578 579 3.053896 GAGGGTTTTGCGGTCCGG 61.054 66.667 14.38 0.00 0.00 5.14
579 580 2.032071 AGAGGGTTTTGCGGTCCG 59.968 61.111 6.99 6.99 0.00 4.79
580 581 0.322546 ATGAGAGGGTTTTGCGGTCC 60.323 55.000 0.00 0.00 0.00 4.46
581 582 1.534729 AATGAGAGGGTTTTGCGGTC 58.465 50.000 0.00 0.00 0.00 4.79
582 583 2.871096 TAATGAGAGGGTTTTGCGGT 57.129 45.000 0.00 0.00 0.00 5.68
583 584 3.016736 ACATAATGAGAGGGTTTTGCGG 58.983 45.455 0.00 0.00 0.00 5.69
584 585 4.701956 AACATAATGAGAGGGTTTTGCG 57.298 40.909 0.00 0.00 0.00 4.85
585 586 6.461509 CCCATAACATAATGAGAGGGTTTTGC 60.462 42.308 0.00 0.00 0.00 3.68
586 587 6.040842 CCCCATAACATAATGAGAGGGTTTTG 59.959 42.308 0.00 0.00 33.14 2.44
587 588 6.136155 CCCCATAACATAATGAGAGGGTTTT 58.864 40.000 0.00 0.00 33.14 2.43
588 589 5.705400 CCCCATAACATAATGAGAGGGTTT 58.295 41.667 0.00 0.00 33.14 3.27
589 590 4.447762 GCCCCATAACATAATGAGAGGGTT 60.448 45.833 0.00 0.00 31.77 4.11
590 591 3.074538 GCCCCATAACATAATGAGAGGGT 59.925 47.826 0.00 0.00 31.77 4.34
591 592 3.331889 AGCCCCATAACATAATGAGAGGG 59.668 47.826 0.00 0.00 32.11 4.30
592 593 4.583871 GAGCCCCATAACATAATGAGAGG 58.416 47.826 0.00 0.00 0.00 3.69
593 594 4.021104 TCGAGCCCCATAACATAATGAGAG 60.021 45.833 0.00 0.00 0.00 3.20
594 595 3.901222 TCGAGCCCCATAACATAATGAGA 59.099 43.478 0.00 0.00 0.00 3.27
595 596 4.021104 TCTCGAGCCCCATAACATAATGAG 60.021 45.833 7.81 0.00 0.00 2.90
596 597 3.901222 TCTCGAGCCCCATAACATAATGA 59.099 43.478 7.81 0.00 0.00 2.57
597 598 4.271696 TCTCGAGCCCCATAACATAATG 57.728 45.455 7.81 0.00 0.00 1.90
598 599 4.323792 CCATCTCGAGCCCCATAACATAAT 60.324 45.833 7.81 0.00 0.00 1.28
599 600 3.007940 CCATCTCGAGCCCCATAACATAA 59.992 47.826 7.81 0.00 0.00 1.90
600 601 2.567169 CCATCTCGAGCCCCATAACATA 59.433 50.000 7.81 0.00 0.00 2.29
601 602 1.349026 CCATCTCGAGCCCCATAACAT 59.651 52.381 7.81 0.00 0.00 2.71
602 603 0.758734 CCATCTCGAGCCCCATAACA 59.241 55.000 7.81 0.00 0.00 2.41
603 604 1.048601 TCCATCTCGAGCCCCATAAC 58.951 55.000 7.81 0.00 0.00 1.89
821 3765 1.374758 CGGAGACCCACTTGTCAGC 60.375 63.158 0.00 0.00 37.73 4.26
891 3836 5.047306 GGGTGCTTAAATAGACCAAAGCTTT 60.047 40.000 5.69 5.69 43.69 3.51
1023 3968 2.358003 AGCACGGACAGAGCAAGC 60.358 61.111 0.00 0.00 38.98 4.01
1024 3969 2.091112 CGAGCACGGACAGAGCAAG 61.091 63.158 0.00 0.00 38.98 4.01
1122 4067 1.523938 GTAGGGGCTGCCGTTGATC 60.524 63.158 13.40 0.00 0.00 2.92
1254 4199 1.899437 CGCTGAAGGCCCAGGTTCTA 61.899 60.000 10.59 0.00 37.74 2.10
1342 4287 6.705863 AAGAGAAGAGTTGAGCAAAATGTT 57.294 33.333 0.00 0.00 0.00 2.71
1358 4303 7.484035 AAGTAGTGCAAGTTACAAAGAGAAG 57.516 36.000 0.00 0.00 0.00 2.85
1395 4368 6.983906 AAGAACCAAATGATCCAAGAAACT 57.016 33.333 0.00 0.00 0.00 2.66
1438 4411 3.945285 GGGAAACAGAATCATAGGCGAAA 59.055 43.478 0.00 0.00 0.00 3.46
1471 4444 1.847999 CGCTCAAACAACAACAGCAAG 59.152 47.619 0.00 0.00 0.00 4.01
1488 4471 2.713531 AAATCCAACCCCTGCACGCT 62.714 55.000 0.00 0.00 0.00 5.07
1517 4500 1.414158 TCCCATTCTTCCTAGCCTCG 58.586 55.000 0.00 0.00 0.00 4.63
1699 4688 7.141363 CCTTGGAAGTTACTCAAGATTTGTTG 58.859 38.462 13.29 0.00 39.97 3.33
1723 4712 3.181470 TGGTAAAGCCTTGCAAGAAAACC 60.181 43.478 28.05 23.21 38.35 3.27
1756 4745 9.474313 AAAGATTACTGGCCAAATAAATGTCTA 57.526 29.630 7.01 0.00 0.00 2.59
1757 4746 7.961326 AAGATTACTGGCCAAATAAATGTCT 57.039 32.000 7.01 6.11 0.00 3.41
1758 4747 8.034804 ACAAAGATTACTGGCCAAATAAATGTC 58.965 33.333 7.01 3.88 0.00 3.06
1759 4748 7.906327 ACAAAGATTACTGGCCAAATAAATGT 58.094 30.769 7.01 7.50 0.00 2.71
1760 4749 8.776376 AACAAAGATTACTGGCCAAATAAATG 57.224 30.769 7.01 6.90 0.00 2.32
1761 4750 9.869757 GTAACAAAGATTACTGGCCAAATAAAT 57.130 29.630 7.01 3.97 33.11 1.40
1786 4784 6.948309 AGCATCTTTACCTCATGTAAAAAGGT 59.052 34.615 8.03 8.03 46.09 3.50
1792 4790 9.162764 GAAAGTAAGCATCTTTACCTCATGTAA 57.837 33.333 0.00 0.00 37.65 2.41
1794 4792 7.398024 AGAAAGTAAGCATCTTTACCTCATGT 58.602 34.615 0.00 0.00 35.62 3.21
1795 4793 7.550551 TGAGAAAGTAAGCATCTTTACCTCATG 59.449 37.037 11.62 0.00 34.22 3.07
1814 4812 9.542462 TTCTCCCACGTAATAATAATGAGAAAG 57.458 33.333 0.00 0.00 34.45 2.62
1818 4816 8.888579 AGTTTCTCCCACGTAATAATAATGAG 57.111 34.615 0.00 0.00 0.00 2.90
1819 4817 9.754382 GTAGTTTCTCCCACGTAATAATAATGA 57.246 33.333 0.00 0.00 0.00 2.57
1820 4818 9.537192 TGTAGTTTCTCCCACGTAATAATAATG 57.463 33.333 0.00 0.00 0.00 1.90
1962 5016 7.360361 GTTATTTTGACCTTGGTACTTGTCAG 58.640 38.462 0.00 0.00 38.79 3.51
2043 5115 2.731341 CGCTAACTAAGACACTGTCGGG 60.731 54.545 3.46 1.42 37.67 5.14
2056 5128 9.177304 CGATTTATTATGTCTGAACGCTAACTA 57.823 33.333 0.00 0.00 0.00 2.24
2061 5133 4.211374 GGCGATTTATTATGTCTGAACGCT 59.789 41.667 0.00 0.00 41.57 5.07
2062 5134 4.455124 GGCGATTTATTATGTCTGAACGC 58.545 43.478 0.00 0.00 41.22 4.84
2063 5135 4.688063 CGGCGATTTATTATGTCTGAACG 58.312 43.478 0.00 0.00 0.00 3.95
2064 5136 4.211374 AGCGGCGATTTATTATGTCTGAAC 59.789 41.667 12.98 0.00 0.00 3.18
2065 5137 4.211164 CAGCGGCGATTTATTATGTCTGAA 59.789 41.667 12.98 0.00 0.00 3.02
2066 5138 3.740832 CAGCGGCGATTTATTATGTCTGA 59.259 43.478 12.98 0.00 0.00 3.27
2067 5139 3.665323 GCAGCGGCGATTTATTATGTCTG 60.665 47.826 12.98 4.61 0.00 3.51
2068 5140 2.480419 GCAGCGGCGATTTATTATGTCT 59.520 45.455 12.98 0.00 0.00 3.41
2069 5141 2.223144 TGCAGCGGCGATTTATTATGTC 59.777 45.455 12.98 0.00 45.35 3.06
2070 5142 2.217750 TGCAGCGGCGATTTATTATGT 58.782 42.857 12.98 0.00 45.35 2.29
2071 5143 2.967459 TGCAGCGGCGATTTATTATG 57.033 45.000 12.98 0.00 45.35 1.90
2072 5144 2.878406 ACTTGCAGCGGCGATTTATTAT 59.122 40.909 12.98 0.00 45.35 1.28
2073 5145 2.285083 ACTTGCAGCGGCGATTTATTA 58.715 42.857 12.98 0.00 45.35 0.98
2074 5146 1.064060 GACTTGCAGCGGCGATTTATT 59.936 47.619 12.98 0.00 45.35 1.40
2075 5147 0.657840 GACTTGCAGCGGCGATTTAT 59.342 50.000 12.98 0.00 45.35 1.40
2076 5148 0.672091 TGACTTGCAGCGGCGATTTA 60.672 50.000 12.98 0.00 45.35 1.40
2077 5149 1.965930 TGACTTGCAGCGGCGATTT 60.966 52.632 12.98 0.00 45.35 2.17
2078 5150 2.358615 TGACTTGCAGCGGCGATT 60.359 55.556 12.98 0.00 45.35 3.34
2079 5151 3.121030 GTGACTTGCAGCGGCGAT 61.121 61.111 12.98 0.00 45.35 4.58
2080 5152 4.600576 TGTGACTTGCAGCGGCGA 62.601 61.111 12.98 0.47 45.35 5.54
2081 5153 4.081030 CTGTGACTTGCAGCGGCG 62.081 66.667 0.51 0.51 45.35 6.46
2082 5154 1.630244 CTACTGTGACTTGCAGCGGC 61.630 60.000 0.31 0.31 37.47 6.53
2083 5155 0.319900 ACTACTGTGACTTGCAGCGG 60.320 55.000 0.00 0.00 37.47 5.52
2084 5156 0.786581 CACTACTGTGACTTGCAGCG 59.213 55.000 0.00 0.00 46.55 5.18
2094 5166 3.742882 CACACTCCAATGTCACTACTGTG 59.257 47.826 0.00 0.00 45.07 3.66
2095 5167 3.803715 GCACACTCCAATGTCACTACTGT 60.804 47.826 0.00 0.00 0.00 3.55
2099 5171 3.701205 ATGCACACTCCAATGTCACTA 57.299 42.857 0.00 0.00 0.00 2.74
2104 5176 3.441572 GCTTCTTATGCACACTCCAATGT 59.558 43.478 0.00 0.00 0.00 2.71
2135 5207 9.498307 CAACAGTATTCCCACGAATAAAATTAC 57.502 33.333 0.00 0.00 41.53 1.89
2137 5209 8.343168 TCAACAGTATTCCCACGAATAAAATT 57.657 30.769 0.00 0.00 41.53 1.82
2138 5210 7.931578 TCAACAGTATTCCCACGAATAAAAT 57.068 32.000 0.00 0.00 41.53 1.82
2142 5218 5.820423 CCATTCAACAGTATTCCCACGAATA 59.180 40.000 0.00 0.00 39.49 1.75
2162 5238 1.355381 TGGTGTCCAGAAGCATCCATT 59.645 47.619 0.00 0.00 0.00 3.16
2190 5266 1.227853 AGCCGAGTGGTGTTTGACC 60.228 57.895 0.00 0.00 46.37 4.02
2249 5325 6.944862 AGTGCCAATAAAGAGATTCAAAGAGT 59.055 34.615 0.00 0.00 0.00 3.24
2254 5330 4.949856 GGGAGTGCCAATAAAGAGATTCAA 59.050 41.667 0.00 0.00 35.15 2.69
2295 5371 4.826733 TGATGCAAAGAGAGGCAAAGTAAA 59.173 37.500 0.00 0.00 44.20 2.01
2296 5372 4.397420 TGATGCAAAGAGAGGCAAAGTAA 58.603 39.130 0.00 0.00 44.20 2.24
2297 5373 4.019792 TGATGCAAAGAGAGGCAAAGTA 57.980 40.909 0.00 0.00 44.20 2.24
2298 5374 2.867624 TGATGCAAAGAGAGGCAAAGT 58.132 42.857 0.00 0.00 44.20 2.66
2299 5375 3.428999 CCATGATGCAAAGAGAGGCAAAG 60.429 47.826 0.00 0.00 44.20 2.77
2308 5384 2.290260 ACGGTCTTCCATGATGCAAAGA 60.290 45.455 0.00 4.89 0.00 2.52
2340 5416 0.469917 ACCCCAGTCACAGTGTTCAG 59.530 55.000 0.00 0.00 0.00 3.02
2348 5424 2.524640 TACGCCACCCCAGTCACA 60.525 61.111 0.00 0.00 0.00 3.58
2354 5430 1.071814 GTTCTTGTACGCCACCCCA 59.928 57.895 0.00 0.00 0.00 4.96
2921 5997 1.065928 GATGACCTGGTAGCCGTCG 59.934 63.158 0.00 0.00 0.00 5.12
2990 6066 0.742281 TGCCGAGCATCTTGAGCTTC 60.742 55.000 0.00 0.00 43.58 3.86
3058 6134 2.414785 CCCTAATTGCCACCGGTGC 61.415 63.158 29.75 23.30 0.00 5.01
3075 6151 0.878961 GTTGTCGTGGTCAGTGGTCC 60.879 60.000 0.00 0.00 0.00 4.46
3082 6161 2.093394 TCCTCTTTTGTTGTCGTGGTCA 60.093 45.455 0.00 0.00 0.00 4.02
3130 6209 3.520290 AGACTCACTCACACACGAAAA 57.480 42.857 0.00 0.00 0.00 2.29
3150 6230 4.273724 CGTGAATCATCTCGAGGAGAACTA 59.726 45.833 13.56 0.00 42.27 2.24
3172 6252 4.489810 CTTCTCTCCCGGATGAATAATCG 58.510 47.826 0.73 0.00 35.99 3.34
3286 6369 3.878237 AAGCCATGATGATCAGTCCAT 57.122 42.857 0.09 1.97 0.00 3.41
3346 6433 7.770897 GCACCCCACCATAGATATAAAATCTAG 59.229 40.741 1.66 0.00 34.50 2.43
3355 6442 6.045459 TCAATTAAGCACCCCACCATAGATAT 59.955 38.462 0.00 0.00 0.00 1.63
3398 6485 6.202516 AGAACAAGATGGACAAACGAAAAA 57.797 33.333 0.00 0.00 0.00 1.94
3399 6486 5.828299 AGAACAAGATGGACAAACGAAAA 57.172 34.783 0.00 0.00 0.00 2.29
3400 6487 5.828299 AAGAACAAGATGGACAAACGAAA 57.172 34.783 0.00 0.00 0.00 3.46
3401 6488 6.018262 CACTAAGAACAAGATGGACAAACGAA 60.018 38.462 0.00 0.00 0.00 3.85
3402 6489 5.465390 CACTAAGAACAAGATGGACAAACGA 59.535 40.000 0.00 0.00 0.00 3.85
3403 6490 5.465390 TCACTAAGAACAAGATGGACAAACG 59.535 40.000 0.00 0.00 0.00 3.60
3404 6491 6.861065 TCACTAAGAACAAGATGGACAAAC 57.139 37.500 0.00 0.00 0.00 2.93
3407 6494 7.719193 TGATTTTCACTAAGAACAAGATGGACA 59.281 33.333 0.00 0.00 35.56 4.02
3464 6551 4.260985 TCATTACTGTAGTTGCCATGGTG 58.739 43.478 14.67 0.00 0.00 4.17
3476 6563 6.049149 GCAGGCTTTCATACTCATTACTGTA 58.951 40.000 0.00 0.00 0.00 2.74
3477 6564 4.878397 GCAGGCTTTCATACTCATTACTGT 59.122 41.667 0.00 0.00 0.00 3.55
3478 6565 4.274459 GGCAGGCTTTCATACTCATTACTG 59.726 45.833 0.00 0.00 0.00 2.74
3479 6566 4.164988 AGGCAGGCTTTCATACTCATTACT 59.835 41.667 0.00 0.00 0.00 2.24
3480 6567 4.455606 AGGCAGGCTTTCATACTCATTAC 58.544 43.478 0.00 0.00 0.00 1.89
3566 6698 2.013400 TGGGCAAAGTATGTATGTGCG 58.987 47.619 0.00 0.00 36.04 5.34
3729 6876 2.290367 TGACAATGAGAACTTGGCGTTG 59.710 45.455 0.00 0.00 34.18 4.10
3733 6880 3.406764 ACTCTGACAATGAGAACTTGGC 58.593 45.455 0.00 0.00 35.66 4.52
3734 6881 3.999663 GGACTCTGACAATGAGAACTTGG 59.000 47.826 0.00 0.00 35.66 3.61
3756 6903 2.856032 CTCCACGAAACAGCTGCG 59.144 61.111 15.27 12.30 0.00 5.18
3757 6904 1.580845 ATGCTCCACGAAACAGCTGC 61.581 55.000 15.27 0.00 34.03 5.25
3762 6912 1.866237 GCGAATGCTCCACGAAACA 59.134 52.632 0.00 0.00 38.39 2.83
3778 6928 2.348666 CACCTCCGAAATACTGAAAGCG 59.651 50.000 0.00 0.00 37.60 4.68
3811 6961 3.123621 GTGAGGTTTATCTGCAGTCGTTG 59.876 47.826 14.67 0.00 0.00 4.10
3816 6969 4.223700 TCATCTGTGAGGTTTATCTGCAGT 59.776 41.667 14.67 3.75 0.00 4.40
3828 6981 7.533426 CAATTAAGGTTTCTTCATCTGTGAGG 58.467 38.462 0.00 0.00 35.39 3.86
3870 7026 8.370182 CCCCTTTTTAGTGTAGTACTGAACTAA 58.630 37.037 20.13 20.13 42.37 2.24
3897 7150 1.515081 TTTCCTTTTACCGACGCTGG 58.485 50.000 0.00 0.00 0.00 4.85
3900 7153 2.031420 AGCTTTTTCCTTTTACCGACGC 60.031 45.455 0.00 0.00 0.00 5.19
4044 7297 8.934507 ATTTGTTTCACTTTTGATTTCCGTTA 57.065 26.923 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.