Multiple sequence alignment - TraesCS3D01G240800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G240800 chr3D 100.000 2531 0 0 1 2531 333502592 333505122 0.000000e+00 4674.0
1 TraesCS3D01G240800 chr3B 97.559 1065 22 4 812 1876 432847223 432846163 0.000000e+00 1820.0
2 TraesCS3D01G240800 chr3B 89.223 798 72 10 1 789 432545343 432546135 0.000000e+00 985.0
3 TraesCS3D01G240800 chr3B 97.048 271 8 0 1896 2166 32545768 32546038 8.250000e-125 457.0
4 TraesCS3D01G240800 chr3B 96.715 274 7 2 1892 2164 145785784 145785512 2.970000e-124 455.0
5 TraesCS3D01G240800 chr3B 86.400 375 25 12 2167 2528 432846125 432845764 1.100000e-103 387.0
6 TraesCS3D01G240800 chr3A 95.594 1112 26 10 770 1876 451665927 451667020 0.000000e+00 1760.0
7 TraesCS3D01G240800 chr3A 86.667 375 24 13 2167 2528 451667058 451667419 2.360000e-105 392.0
8 TraesCS3D01G240800 chr1D 97.417 271 7 0 1894 2164 419022110 419022380 1.770000e-126 462.0
9 TraesCS3D01G240800 chr7D 97.407 270 7 0 1895 2164 452445959 452445690 6.380000e-126 460.0
10 TraesCS3D01G240800 chr7D 94.774 287 13 2 1897 2182 1506196 1505911 1.790000e-121 446.0
11 TraesCS3D01G240800 chr7D 94.000 50 3 0 85 134 265271161 265271112 2.700000e-10 76.8
12 TraesCS3D01G240800 chr1B 97.398 269 7 0 1897 2165 66377657 66377925 2.290000e-125 459.0
13 TraesCS3D01G240800 chr5B 96.403 278 9 1 1892 2168 442846389 442846666 8.250000e-125 457.0
14 TraesCS3D01G240800 chr5B 97.388 268 7 0 1900 2167 703270075 703269808 8.250000e-125 457.0
15 TraesCS3D01G240800 chr4B 97.388 268 7 0 1897 2164 483761958 483761691 8.250000e-125 457.0
16 TraesCS3D01G240800 chr5A 96.154 52 0 2 85 134 292786824 292786875 1.610000e-12 84.2
17 TraesCS3D01G240800 chr7A 90.385 52 5 0 83 134 290295268 290295217 4.520000e-08 69.4
18 TraesCS3D01G240800 chr5D 89.286 56 5 1 80 134 219450479 219450534 4.520000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G240800 chr3D 333502592 333505122 2530 False 4674.0 4674 100.0000 1 2531 1 chr3D.!!$F1 2530
1 TraesCS3D01G240800 chr3B 432845764 432847223 1459 True 1103.5 1820 91.9795 812 2528 2 chr3B.!!$R2 1716
2 TraesCS3D01G240800 chr3B 432545343 432546135 792 False 985.0 985 89.2230 1 789 1 chr3B.!!$F2 788
3 TraesCS3D01G240800 chr3A 451665927 451667419 1492 False 1076.0 1760 91.1305 770 2528 2 chr3A.!!$F1 1758

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
717 735 0.034477 CGGGGTAGCCTTTGGATTGT 60.034 55.0 11.48 0.0 0.0 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1903 1947 0.030369 GCATTGGCTAGAGCATGCAC 59.97 55.0 21.98 14.59 44.74 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 77 9.269453 TGCAATCATTGTCAAACAAATATTTGA 57.731 25.926 30.18 9.87 44.40 2.69
106 109 5.835819 TCCCTGTGAAATTTTCAACATACCA 59.164 36.000 13.21 5.71 42.15 3.25
112 115 9.258826 TGTGAAATTTTCAACATACCAGATTTG 57.741 29.630 13.21 0.00 42.15 2.32
113 116 8.711457 GTGAAATTTTCAACATACCAGATTTGG 58.289 33.333 13.21 0.00 45.22 3.28
153 157 1.138247 CCGACTAGGGTTTCGACCG 59.862 63.158 2.30 0.00 37.43 4.79
154 158 1.138247 CGACTAGGGTTTCGACCGG 59.862 63.158 0.00 0.00 37.43 5.28
159 163 0.251297 TAGGGTTTCGACCGGAGACA 60.251 55.000 9.46 0.00 31.54 3.41
163 167 2.558286 TTTCGACCGGAGACAGCGT 61.558 57.895 9.46 0.00 0.00 5.07
166 170 2.885861 GACCGGAGACAGCGTCAT 59.114 61.111 9.46 0.00 34.60 3.06
182 186 2.112928 ATCGCCACCAGCACAACA 59.887 55.556 0.00 0.00 44.04 3.33
184 188 2.680974 ATCGCCACCAGCACAACACT 62.681 55.000 0.00 0.00 44.04 3.55
211 215 4.168291 GGGAGAGCCGCAAGAGGG 62.168 72.222 0.00 0.00 43.02 4.30
227 231 0.688087 AGGGGAGATTGGAGGACGAC 60.688 60.000 0.00 0.00 0.00 4.34
234 238 0.108615 ATTGGAGGACGACGAAGCAG 60.109 55.000 0.00 0.00 0.00 4.24
276 280 0.618981 AATCCCCAAGTCCGGAGAAC 59.381 55.000 3.06 0.00 0.00 3.01
300 304 3.885901 GGAGGCAATCTTACCAGATTTCC 59.114 47.826 5.72 5.72 46.07 3.13
305 309 4.272489 CAATCTTACCAGATTTCCAGGCA 58.728 43.478 0.00 0.00 46.07 4.75
363 367 3.175240 CAGACGAAGAGCGCACCG 61.175 66.667 11.47 9.73 46.04 4.94
384 388 3.612681 ACGACCACGACCACCCAG 61.613 66.667 0.00 0.00 42.66 4.45
429 433 1.019278 CCGCGCAACATAGGAAGTGT 61.019 55.000 8.75 0.00 0.00 3.55
470 474 2.178521 CGACAACGTCCTCCTCGG 59.821 66.667 0.00 0.00 34.56 4.63
481 485 1.092921 CCTCCTCGGAGTCAGACTCG 61.093 65.000 21.98 17.20 45.96 4.18
482 486 1.078356 TCCTCGGAGTCAGACTCGG 60.078 63.158 25.41 25.41 45.96 4.63
483 487 1.377463 CCTCGGAGTCAGACTCGGT 60.377 63.158 28.27 0.00 45.96 4.69
492 496 3.275143 AGTCAGACTCGGTCTCATACTG 58.725 50.000 0.00 0.00 41.37 2.74
559 563 1.457346 CAACACATGGGAAGAGGAGC 58.543 55.000 0.00 0.00 0.00 4.70
565 569 4.516195 GGGAAGAGGAGCGTCGGC 62.516 72.222 0.00 0.00 40.37 5.54
568 572 4.117661 AAGAGGAGCGTCGGCGAC 62.118 66.667 29.06 29.06 46.35 5.19
585 589 0.255318 GACGGTAGAGAGGAGGGTGA 59.745 60.000 0.00 0.00 0.00 4.02
597 601 2.041405 GGGTGAGGGAGGGAGAGG 60.041 72.222 0.00 0.00 0.00 3.69
599 603 1.382009 GGTGAGGGAGGGAGAGGAC 60.382 68.421 0.00 0.00 0.00 3.85
603 607 1.928714 GAGGGAGGGAGAGGACGACT 61.929 65.000 0.00 0.00 0.00 4.18
611 615 3.816388 GAGGACGACTCGAGGGAG 58.184 66.667 18.41 9.82 46.13 4.30
615 619 3.053849 GACGACTCGAGGGAGCCAC 62.054 68.421 18.41 0.00 44.48 5.01
662 666 0.253207 GGAAGAAGGGAGGAGGGGAA 60.253 60.000 0.00 0.00 0.00 3.97
677 681 2.042230 GAAGCGGAGGGGGAGGTA 60.042 66.667 0.00 0.00 0.00 3.08
682 700 4.188511 GGAGGGGGAGGTAGGGGG 62.189 77.778 0.00 0.00 0.00 5.40
699 717 3.237741 GGGGGAGGAGAGCCATCG 61.238 72.222 0.00 0.00 36.29 3.84
701 719 3.237741 GGGAGGAGAGCCATCGGG 61.238 72.222 0.00 0.00 36.29 5.14
716 734 0.254747 TCGGGGTAGCCTTTGGATTG 59.745 55.000 11.48 0.00 0.00 2.67
717 735 0.034477 CGGGGTAGCCTTTGGATTGT 60.034 55.000 11.48 0.00 0.00 2.71
718 736 1.210967 CGGGGTAGCCTTTGGATTGTA 59.789 52.381 11.48 0.00 0.00 2.41
1050 1068 0.859760 CCATCCTCTCTCTCCCCTCT 59.140 60.000 0.00 0.00 0.00 3.69
1682 1706 5.590104 TCATGTTCGTGTGTTGTATTCAG 57.410 39.130 0.00 0.00 0.00 3.02
1744 1768 6.893005 CCTAATGGGTACTATTGGTTTTGGAA 59.107 38.462 0.00 0.00 40.54 3.53
1869 1893 4.130118 AGCTCTCAGTTTATAATTGCCCG 58.870 43.478 0.00 0.00 0.00 6.13
1871 1895 4.260784 GCTCTCAGTTTATAATTGCCCGTG 60.261 45.833 0.00 0.00 0.00 4.94
1876 1920 6.119536 TCAGTTTATAATTGCCCGTGAGATT 58.880 36.000 0.00 0.00 0.00 2.40
1887 1931 3.938963 GCCCGTGAGATTTGTTATCAAGA 59.061 43.478 0.00 0.00 34.88 3.02
1888 1932 4.201822 GCCCGTGAGATTTGTTATCAAGAC 60.202 45.833 0.00 0.00 34.88 3.01
1890 1934 5.292101 CCCGTGAGATTTGTTATCAAGACTC 59.708 44.000 11.62 11.62 37.68 3.36
1897 1941 6.591834 AGATTTGTTATCAAGACTCGGAAGTG 59.408 38.462 0.00 0.00 35.28 3.16
1899 1943 5.970317 TGTTATCAAGACTCGGAAGTGTA 57.030 39.130 0.00 0.00 38.04 2.90
1900 1944 5.950883 TGTTATCAAGACTCGGAAGTGTAG 58.049 41.667 0.00 0.00 38.04 2.74
1901 1945 5.708697 TGTTATCAAGACTCGGAAGTGTAGA 59.291 40.000 0.00 0.00 38.04 2.59
1902 1946 6.208007 TGTTATCAAGACTCGGAAGTGTAGAA 59.792 38.462 0.00 0.00 38.04 2.10
1903 1947 4.768130 TCAAGACTCGGAAGTGTAGAAG 57.232 45.455 0.00 0.00 38.04 2.85
1904 1948 4.142790 TCAAGACTCGGAAGTGTAGAAGT 58.857 43.478 0.00 0.00 38.04 3.01
1905 1949 4.023107 TCAAGACTCGGAAGTGTAGAAGTG 60.023 45.833 0.00 0.00 38.04 3.16
1906 1950 2.229302 AGACTCGGAAGTGTAGAAGTGC 59.771 50.000 0.00 0.00 38.04 4.40
1907 1951 1.961394 ACTCGGAAGTGTAGAAGTGCA 59.039 47.619 0.00 0.00 35.84 4.57
1908 1952 2.563179 ACTCGGAAGTGTAGAAGTGCAT 59.437 45.455 0.00 0.00 35.84 3.96
1909 1953 2.926200 CTCGGAAGTGTAGAAGTGCATG 59.074 50.000 0.00 0.00 0.00 4.06
1910 1954 1.394917 CGGAAGTGTAGAAGTGCATGC 59.605 52.381 11.82 11.82 0.00 4.06
1911 1955 2.704572 GGAAGTGTAGAAGTGCATGCT 58.295 47.619 20.33 0.00 0.00 3.79
1912 1956 2.675348 GGAAGTGTAGAAGTGCATGCTC 59.325 50.000 20.33 15.94 0.00 4.26
1913 1957 3.594134 GAAGTGTAGAAGTGCATGCTCT 58.406 45.455 20.33 18.23 0.00 4.09
1914 1958 4.382040 GGAAGTGTAGAAGTGCATGCTCTA 60.382 45.833 21.70 15.62 0.00 2.43
1915 1959 4.383850 AGTGTAGAAGTGCATGCTCTAG 57.616 45.455 21.70 0.00 0.00 2.43
1916 1960 2.863137 GTGTAGAAGTGCATGCTCTAGC 59.137 50.000 21.70 16.29 42.50 3.42
1917 1961 2.159043 TGTAGAAGTGCATGCTCTAGCC 60.159 50.000 21.70 13.81 41.18 3.93
1918 1962 0.907486 AGAAGTGCATGCTCTAGCCA 59.093 50.000 21.70 0.00 41.18 4.75
1919 1963 1.280133 AGAAGTGCATGCTCTAGCCAA 59.720 47.619 21.70 0.00 41.18 4.52
1920 1964 2.092538 AGAAGTGCATGCTCTAGCCAAT 60.093 45.455 21.70 5.92 41.18 3.16
1921 1965 1.676746 AGTGCATGCTCTAGCCAATG 58.323 50.000 20.22 0.00 41.18 2.82
1922 1966 0.030369 GTGCATGCTCTAGCCAATGC 59.970 55.000 20.33 16.33 45.25 3.56
1923 1967 2.411535 GCATGCTCTAGCCAATGCA 58.588 52.632 11.37 0.00 44.74 3.96
1924 1968 0.742505 GCATGCTCTAGCCAATGCAA 59.257 50.000 11.37 0.00 44.74 4.08
1925 1969 1.535437 GCATGCTCTAGCCAATGCAAC 60.535 52.381 11.37 2.38 44.74 4.17
1926 1970 1.066605 CATGCTCTAGCCAATGCAACC 59.933 52.381 0.00 0.00 41.13 3.77
1927 1971 0.038021 TGCTCTAGCCAATGCAACCA 59.962 50.000 0.00 0.00 41.13 3.67
1928 1972 1.176527 GCTCTAGCCAATGCAACCAA 58.823 50.000 0.00 0.00 41.13 3.67
1929 1973 1.545582 GCTCTAGCCAATGCAACCAAA 59.454 47.619 0.00 0.00 41.13 3.28
1930 1974 2.029110 GCTCTAGCCAATGCAACCAAAA 60.029 45.455 0.00 0.00 41.13 2.44
1931 1975 3.554752 GCTCTAGCCAATGCAACCAAAAA 60.555 43.478 0.00 0.00 41.13 1.94
1950 1994 4.826274 AAAACCGATCTGATGGAAGAGA 57.174 40.909 11.46 0.00 0.00 3.10
1951 1995 3.810310 AACCGATCTGATGGAAGAGAC 57.190 47.619 11.46 0.00 0.00 3.36
1952 1996 3.025322 ACCGATCTGATGGAAGAGACT 57.975 47.619 11.46 0.00 0.00 3.24
1953 1997 4.171878 ACCGATCTGATGGAAGAGACTA 57.828 45.455 11.46 0.00 0.00 2.59
1954 1998 4.141287 ACCGATCTGATGGAAGAGACTAG 58.859 47.826 11.46 0.00 0.00 2.57
1955 1999 3.505680 CCGATCTGATGGAAGAGACTAGG 59.494 52.174 0.83 0.00 0.00 3.02
1956 2000 3.057596 CGATCTGATGGAAGAGACTAGGC 60.058 52.174 0.00 0.00 0.00 3.93
1957 2001 3.388552 TCTGATGGAAGAGACTAGGCA 57.611 47.619 0.00 0.00 0.00 4.75
1958 2002 3.295093 TCTGATGGAAGAGACTAGGCAG 58.705 50.000 0.00 0.00 0.00 4.85
1959 2003 1.759445 TGATGGAAGAGACTAGGCAGC 59.241 52.381 0.00 0.00 0.00 5.25
1960 2004 1.759445 GATGGAAGAGACTAGGCAGCA 59.241 52.381 0.00 0.00 0.00 4.41
1961 2005 0.898320 TGGAAGAGACTAGGCAGCAC 59.102 55.000 0.00 0.00 0.00 4.40
1962 2006 0.898320 GGAAGAGACTAGGCAGCACA 59.102 55.000 0.00 0.00 0.00 4.57
1963 2007 1.484240 GGAAGAGACTAGGCAGCACAT 59.516 52.381 0.00 0.00 0.00 3.21
1964 2008 2.093235 GGAAGAGACTAGGCAGCACATT 60.093 50.000 0.00 0.00 0.00 2.71
1965 2009 3.133003 GGAAGAGACTAGGCAGCACATTA 59.867 47.826 0.00 0.00 0.00 1.90
1966 2010 4.202305 GGAAGAGACTAGGCAGCACATTAT 60.202 45.833 0.00 0.00 0.00 1.28
1967 2011 5.011125 GGAAGAGACTAGGCAGCACATTATA 59.989 44.000 0.00 0.00 0.00 0.98
1968 2012 5.461032 AGAGACTAGGCAGCACATTATAC 57.539 43.478 0.00 0.00 0.00 1.47
1969 2013 4.022762 AGAGACTAGGCAGCACATTATACG 60.023 45.833 0.00 0.00 0.00 3.06
1970 2014 3.637229 AGACTAGGCAGCACATTATACGT 59.363 43.478 0.00 0.00 0.00 3.57
1971 2015 3.978687 ACTAGGCAGCACATTATACGTC 58.021 45.455 0.00 0.00 0.00 4.34
1972 2016 2.979814 AGGCAGCACATTATACGTCA 57.020 45.000 0.00 0.00 0.00 4.35
1973 2017 3.260475 AGGCAGCACATTATACGTCAA 57.740 42.857 0.00 0.00 0.00 3.18
1974 2018 2.936498 AGGCAGCACATTATACGTCAAC 59.064 45.455 0.00 0.00 0.00 3.18
1975 2019 2.675844 GGCAGCACATTATACGTCAACA 59.324 45.455 0.00 0.00 0.00 3.33
1976 2020 3.485216 GGCAGCACATTATACGTCAACAC 60.485 47.826 0.00 0.00 0.00 3.32
1977 2021 3.370978 GCAGCACATTATACGTCAACACT 59.629 43.478 0.00 0.00 0.00 3.55
1978 2022 4.142902 GCAGCACATTATACGTCAACACTT 60.143 41.667 0.00 0.00 0.00 3.16
1979 2023 5.550981 CAGCACATTATACGTCAACACTTC 58.449 41.667 0.00 0.00 0.00 3.01
1980 2024 4.630069 AGCACATTATACGTCAACACTTCC 59.370 41.667 0.00 0.00 0.00 3.46
1981 2025 4.201783 GCACATTATACGTCAACACTTCCC 60.202 45.833 0.00 0.00 0.00 3.97
1982 2026 4.331717 CACATTATACGTCAACACTTCCCC 59.668 45.833 0.00 0.00 0.00 4.81
1983 2027 4.224370 ACATTATACGTCAACACTTCCCCT 59.776 41.667 0.00 0.00 0.00 4.79
1984 2028 4.460948 TTATACGTCAACACTTCCCCTC 57.539 45.455 0.00 0.00 0.00 4.30
1985 2029 1.707106 TACGTCAACACTTCCCCTCA 58.293 50.000 0.00 0.00 0.00 3.86
1986 2030 0.106149 ACGTCAACACTTCCCCTCAC 59.894 55.000 0.00 0.00 0.00 3.51
1987 2031 0.944311 CGTCAACACTTCCCCTCACG 60.944 60.000 0.00 0.00 0.00 4.35
1988 2032 0.106149 GTCAACACTTCCCCTCACGT 59.894 55.000 0.00 0.00 0.00 4.49
1989 2033 0.105964 TCAACACTTCCCCTCACGTG 59.894 55.000 9.94 9.94 0.00 4.49
1990 2034 0.179056 CAACACTTCCCCTCACGTGT 60.179 55.000 16.51 0.00 41.92 4.49
1991 2035 0.179056 AACACTTCCCCTCACGTGTG 60.179 55.000 16.51 13.39 40.19 3.82
1992 2036 1.301716 CACTTCCCCTCACGTGTGG 60.302 63.158 26.15 26.15 0.00 4.17
1993 2037 2.358737 CTTCCCCTCACGTGTGGC 60.359 66.667 27.37 0.00 0.00 5.01
1994 2038 2.847234 TTCCCCTCACGTGTGGCT 60.847 61.111 27.37 0.00 0.00 4.75
1995 2039 2.397413 CTTCCCCTCACGTGTGGCTT 62.397 60.000 27.37 0.00 0.00 4.35
1996 2040 2.358737 CCCCTCACGTGTGGCTTC 60.359 66.667 27.37 0.00 0.00 3.86
1997 2041 2.358737 CCCTCACGTGTGGCTTCC 60.359 66.667 27.37 0.00 0.00 3.46
1998 2042 2.743718 CCTCACGTGTGGCTTCCT 59.256 61.111 22.53 0.00 0.00 3.36
1999 2043 1.374758 CCTCACGTGTGGCTTCCTC 60.375 63.158 22.53 0.00 0.00 3.71
2000 2044 1.367471 CTCACGTGTGGCTTCCTCA 59.633 57.895 16.51 0.00 0.00 3.86
2001 2045 0.668706 CTCACGTGTGGCTTCCTCAG 60.669 60.000 16.51 0.00 0.00 3.35
2002 2046 1.669115 CACGTGTGGCTTCCTCAGG 60.669 63.158 7.58 6.19 38.38 3.86
2009 2053 3.176728 GGCTTCCTCAGGCCTAAAC 57.823 57.895 3.98 0.00 44.48 2.01
2010 2054 0.744771 GGCTTCCTCAGGCCTAAACG 60.745 60.000 3.98 0.00 44.48 3.60
2011 2055 0.036294 GCTTCCTCAGGCCTAAACGT 60.036 55.000 3.98 0.00 0.00 3.99
2012 2056 1.726853 CTTCCTCAGGCCTAAACGTG 58.273 55.000 3.98 0.00 0.00 4.49
2013 2057 0.323629 TTCCTCAGGCCTAAACGTGG 59.676 55.000 3.98 3.42 0.00 4.94
2014 2058 0.543410 TCCTCAGGCCTAAACGTGGA 60.543 55.000 3.98 6.19 0.00 4.02
2015 2059 0.391263 CCTCAGGCCTAAACGTGGAC 60.391 60.000 3.98 0.00 0.00 4.02
2016 2060 0.391263 CTCAGGCCTAAACGTGGACC 60.391 60.000 3.98 0.00 31.51 4.46
2017 2061 1.740296 CAGGCCTAAACGTGGACCG 60.740 63.158 3.98 0.00 44.03 4.79
2018 2062 1.909781 AGGCCTAAACGTGGACCGA 60.910 57.895 1.29 0.00 40.70 4.69
2019 2063 1.004679 GGCCTAAACGTGGACCGAA 60.005 57.895 0.00 0.00 40.70 4.30
2020 2064 0.603439 GGCCTAAACGTGGACCGAAA 60.603 55.000 0.00 0.00 40.70 3.46
2021 2065 0.794473 GCCTAAACGTGGACCGAAAG 59.206 55.000 0.00 0.00 40.70 2.62
2022 2066 1.875157 GCCTAAACGTGGACCGAAAGT 60.875 52.381 0.00 0.00 40.70 2.66
2023 2067 1.796459 CCTAAACGTGGACCGAAAGTG 59.204 52.381 0.00 0.00 40.70 3.16
2024 2068 1.796459 CTAAACGTGGACCGAAAGTGG 59.204 52.381 0.00 0.00 40.70 4.00
2025 2069 0.816421 AAACGTGGACCGAAAGTGGG 60.816 55.000 0.00 0.00 40.70 4.61
2026 2070 3.047877 CGTGGACCGAAAGTGGGC 61.048 66.667 0.00 0.00 39.56 5.36
2027 2071 2.430367 GTGGACCGAAAGTGGGCT 59.570 61.111 0.00 0.00 37.14 5.19
2028 2072 1.966451 GTGGACCGAAAGTGGGCTG 60.966 63.158 0.00 0.00 37.14 4.85
2029 2073 3.056328 GGACCGAAAGTGGGCTGC 61.056 66.667 0.00 0.00 37.14 5.25
2030 2074 2.281484 GACCGAAAGTGGGCTGCA 60.281 61.111 0.50 0.00 32.64 4.41
2031 2075 1.896660 GACCGAAAGTGGGCTGCAA 60.897 57.895 0.50 0.00 32.64 4.08
2032 2076 1.228552 ACCGAAAGTGGGCTGCAAT 60.229 52.632 0.50 0.00 0.00 3.56
2033 2077 0.827507 ACCGAAAGTGGGCTGCAATT 60.828 50.000 0.50 0.00 0.00 2.32
2034 2078 0.318120 CCGAAAGTGGGCTGCAATTT 59.682 50.000 0.50 0.00 0.00 1.82
2035 2079 1.543802 CCGAAAGTGGGCTGCAATTTA 59.456 47.619 0.50 0.00 0.00 1.40
2036 2080 2.029470 CCGAAAGTGGGCTGCAATTTAA 60.029 45.455 0.50 0.00 0.00 1.52
2037 2081 3.368323 CCGAAAGTGGGCTGCAATTTAAT 60.368 43.478 0.50 0.00 0.00 1.40
2038 2082 4.244862 CGAAAGTGGGCTGCAATTTAATT 58.755 39.130 0.50 0.00 0.00 1.40
2039 2083 4.091800 CGAAAGTGGGCTGCAATTTAATTG 59.908 41.667 12.84 12.84 43.06 2.32
2048 2092 0.922717 CAATTTAATTGCGCCAGCCG 59.077 50.000 4.18 0.00 44.33 5.52
2049 2093 0.179113 AATTTAATTGCGCCAGCCGG 60.179 50.000 4.18 0.00 44.33 6.13
2050 2094 2.015227 ATTTAATTGCGCCAGCCGGG 62.015 55.000 4.18 0.00 44.33 5.73
2051 2095 3.929334 TTAATTGCGCCAGCCGGGT 62.929 57.895 4.18 0.00 44.33 5.28
2057 2101 4.697756 CGCCAGCCGGGTCTTGAA 62.698 66.667 1.27 0.00 39.65 2.69
2058 2102 3.056328 GCCAGCCGGGTCTTGAAC 61.056 66.667 1.27 0.00 39.65 3.18
2059 2103 2.750350 CCAGCCGGGTCTTGAACT 59.250 61.111 1.27 0.00 0.00 3.01
2060 2104 1.376037 CCAGCCGGGTCTTGAACTC 60.376 63.158 1.27 0.00 0.00 3.01
2061 2105 1.371183 CAGCCGGGTCTTGAACTCA 59.629 57.895 1.27 0.00 0.00 3.41
2062 2106 0.250295 CAGCCGGGTCTTGAACTCAA 60.250 55.000 1.27 0.00 0.00 3.02
2078 2122 4.541213 AAGACCTCTTGGCTCCGA 57.459 55.556 0.00 0.00 34.38 4.55
2079 2123 2.998493 AAGACCTCTTGGCTCCGAT 58.002 52.632 0.00 0.00 34.38 4.18
2080 2124 2.160721 AAGACCTCTTGGCTCCGATA 57.839 50.000 0.00 0.00 34.38 2.92
2081 2125 1.404843 AGACCTCTTGGCTCCGATAC 58.595 55.000 0.00 0.00 36.63 2.24
2082 2126 0.389757 GACCTCTTGGCTCCGATACC 59.610 60.000 0.00 0.00 36.63 2.73
2083 2127 0.325296 ACCTCTTGGCTCCGATACCA 60.325 55.000 0.00 0.00 36.63 3.25
2084 2128 1.051812 CCTCTTGGCTCCGATACCAT 58.948 55.000 0.00 0.00 35.42 3.55
2085 2129 1.270518 CCTCTTGGCTCCGATACCATG 60.271 57.143 0.00 0.00 35.42 3.66
2086 2130 1.414181 CTCTTGGCTCCGATACCATGT 59.586 52.381 0.00 0.00 35.42 3.21
2087 2131 2.628178 CTCTTGGCTCCGATACCATGTA 59.372 50.000 0.00 0.00 35.42 2.29
2088 2132 2.628178 TCTTGGCTCCGATACCATGTAG 59.372 50.000 0.00 0.00 35.42 2.74
2089 2133 2.375014 TGGCTCCGATACCATGTAGA 57.625 50.000 0.00 0.00 0.00 2.59
2090 2134 2.673258 TGGCTCCGATACCATGTAGAA 58.327 47.619 0.00 0.00 0.00 2.10
2091 2135 2.628178 TGGCTCCGATACCATGTAGAAG 59.372 50.000 0.00 0.00 0.00 2.85
2092 2136 2.628657 GGCTCCGATACCATGTAGAAGT 59.371 50.000 0.00 0.00 0.00 3.01
2093 2137 3.553096 GGCTCCGATACCATGTAGAAGTG 60.553 52.174 0.00 0.00 0.00 3.16
2094 2138 3.643763 CTCCGATACCATGTAGAAGTGC 58.356 50.000 0.00 0.00 0.00 4.40
2095 2139 3.028130 TCCGATACCATGTAGAAGTGCA 58.972 45.455 0.00 0.00 0.00 4.57
2096 2140 3.641436 TCCGATACCATGTAGAAGTGCAT 59.359 43.478 0.00 0.00 0.00 3.96
2097 2141 3.742882 CCGATACCATGTAGAAGTGCATG 59.257 47.826 0.00 0.00 44.17 4.06
2098 2142 3.185188 CGATACCATGTAGAAGTGCATGC 59.815 47.826 11.82 11.82 43.45 4.06
2099 2143 2.795231 ACCATGTAGAAGTGCATGCT 57.205 45.000 20.33 0.00 43.45 3.79
2100 2144 2.636830 ACCATGTAGAAGTGCATGCTC 58.363 47.619 20.33 15.94 43.45 4.26
2101 2145 2.238144 ACCATGTAGAAGTGCATGCTCT 59.762 45.455 20.33 18.23 43.45 4.09
2102 2146 3.452264 ACCATGTAGAAGTGCATGCTCTA 59.548 43.478 21.70 15.62 43.45 2.43
2103 2147 4.056740 CCATGTAGAAGTGCATGCTCTAG 58.943 47.826 21.70 7.70 43.45 2.43
2104 2148 3.170791 TGTAGAAGTGCATGCTCTAGC 57.829 47.619 21.70 16.29 42.50 3.42
2105 2149 2.159043 TGTAGAAGTGCATGCTCTAGCC 60.159 50.000 21.70 13.81 41.18 3.93
2106 2150 0.907486 AGAAGTGCATGCTCTAGCCA 59.093 50.000 21.70 0.00 41.18 4.75
2107 2151 1.280133 AGAAGTGCATGCTCTAGCCAA 59.720 47.619 21.70 0.00 41.18 4.52
2108 2152 2.092538 AGAAGTGCATGCTCTAGCCAAT 60.093 45.455 21.70 5.92 41.18 3.16
2109 2153 1.676746 AGTGCATGCTCTAGCCAATG 58.323 50.000 20.22 0.00 41.18 2.82
2110 2154 0.030369 GTGCATGCTCTAGCCAATGC 59.970 55.000 20.33 16.33 45.25 3.56
2111 2155 2.411535 GCATGCTCTAGCCAATGCA 58.588 52.632 11.37 0.00 44.74 3.96
2112 2156 0.742505 GCATGCTCTAGCCAATGCAA 59.257 50.000 11.37 0.00 44.74 4.08
2113 2157 1.535437 GCATGCTCTAGCCAATGCAAC 60.535 52.381 11.37 2.38 44.74 4.17
2114 2158 1.066605 CATGCTCTAGCCAATGCAACC 59.933 52.381 0.00 0.00 41.13 3.77
2115 2159 0.038021 TGCTCTAGCCAATGCAACCA 59.962 50.000 0.00 0.00 41.13 3.67
2116 2160 1.176527 GCTCTAGCCAATGCAACCAA 58.823 50.000 0.00 0.00 41.13 3.67
2117 2161 1.545582 GCTCTAGCCAATGCAACCAAA 59.454 47.619 0.00 0.00 41.13 3.28
2118 2162 2.029110 GCTCTAGCCAATGCAACCAAAA 60.029 45.455 0.00 0.00 41.13 2.44
2119 2163 3.554752 GCTCTAGCCAATGCAACCAAAAA 60.555 43.478 0.00 0.00 41.13 1.94
2138 2182 4.826274 AAAACCGATCTGATGGAAGAGA 57.174 40.909 11.46 0.00 0.00 3.10
2139 2183 3.810310 AACCGATCTGATGGAAGAGAC 57.190 47.619 11.46 0.00 0.00 3.36
2140 2184 3.025322 ACCGATCTGATGGAAGAGACT 57.975 47.619 11.46 0.00 0.00 3.24
2141 2185 4.171878 ACCGATCTGATGGAAGAGACTA 57.828 45.455 11.46 0.00 0.00 2.59
2142 2186 4.141287 ACCGATCTGATGGAAGAGACTAG 58.859 47.826 11.46 0.00 0.00 2.57
2143 2187 3.505680 CCGATCTGATGGAAGAGACTAGG 59.494 52.174 0.83 0.00 0.00 3.02
2144 2188 3.057596 CGATCTGATGGAAGAGACTAGGC 60.058 52.174 0.00 0.00 0.00 3.93
2145 2189 3.388552 TCTGATGGAAGAGACTAGGCA 57.611 47.619 0.00 0.00 0.00 4.75
2146 2190 3.713003 TCTGATGGAAGAGACTAGGCAA 58.287 45.455 0.00 0.00 0.00 4.52
2147 2191 3.449018 TCTGATGGAAGAGACTAGGCAAC 59.551 47.826 0.00 0.00 0.00 4.17
2148 2192 3.173151 TGATGGAAGAGACTAGGCAACA 58.827 45.455 0.00 0.00 41.41 3.33
2149 2193 3.055819 TGATGGAAGAGACTAGGCAACAC 60.056 47.826 0.00 0.00 41.41 3.32
2150 2194 2.325484 TGGAAGAGACTAGGCAACACA 58.675 47.619 0.00 0.00 41.41 3.72
2151 2195 2.906389 TGGAAGAGACTAGGCAACACAT 59.094 45.455 0.00 0.00 41.41 3.21
2152 2196 3.327757 TGGAAGAGACTAGGCAACACATT 59.672 43.478 0.00 0.00 41.41 2.71
2153 2197 4.530553 TGGAAGAGACTAGGCAACACATTA 59.469 41.667 0.00 0.00 41.41 1.90
2154 2198 5.189736 TGGAAGAGACTAGGCAACACATTAT 59.810 40.000 0.00 0.00 41.41 1.28
2155 2199 6.382859 TGGAAGAGACTAGGCAACACATTATA 59.617 38.462 0.00 0.00 41.41 0.98
2156 2200 6.702282 GGAAGAGACTAGGCAACACATTATAC 59.298 42.308 0.00 0.00 41.41 1.47
2157 2201 5.833082 AGAGACTAGGCAACACATTATACG 58.167 41.667 0.00 0.00 41.41 3.06
2158 2202 5.360144 AGAGACTAGGCAACACATTATACGT 59.640 40.000 0.00 0.00 41.41 3.57
2159 2203 5.589192 AGACTAGGCAACACATTATACGTC 58.411 41.667 0.00 0.00 41.41 4.34
2160 2204 5.126545 AGACTAGGCAACACATTATACGTCA 59.873 40.000 0.00 0.00 41.41 4.35
2161 2205 5.726397 ACTAGGCAACACATTATACGTCAA 58.274 37.500 0.00 0.00 41.41 3.18
2162 2206 4.939509 AGGCAACACATTATACGTCAAC 57.060 40.909 0.00 0.00 41.41 3.18
2163 2207 4.320023 AGGCAACACATTATACGTCAACA 58.680 39.130 0.00 0.00 41.41 3.33
2164 2208 4.391830 AGGCAACACATTATACGTCAACAG 59.608 41.667 0.00 0.00 41.41 3.16
2165 2209 4.390603 GGCAACACATTATACGTCAACAGA 59.609 41.667 0.00 0.00 0.00 3.41
2166 2210 5.106869 GGCAACACATTATACGTCAACAGAA 60.107 40.000 0.00 0.00 0.00 3.02
2167 2211 6.367421 GCAACACATTATACGTCAACAGAAA 58.633 36.000 0.00 0.00 0.00 2.52
2168 2212 6.519761 GCAACACATTATACGTCAACAGAAAG 59.480 38.462 0.00 0.00 0.00 2.62
2169 2213 7.572759 CAACACATTATACGTCAACAGAAAGT 58.427 34.615 0.00 0.00 0.00 2.66
2170 2214 8.705134 CAACACATTATACGTCAACAGAAAGTA 58.295 33.333 0.00 0.00 0.00 2.24
2171 2215 8.997621 ACACATTATACGTCAACAGAAAGTAT 57.002 30.769 0.00 0.00 33.29 2.12
2172 2216 9.084164 ACACATTATACGTCAACAGAAAGTATC 57.916 33.333 0.00 0.00 31.43 2.24
2173 2217 9.302345 CACATTATACGTCAACAGAAAGTATCT 57.698 33.333 0.00 0.00 39.68 1.98
2174 2218 9.517609 ACATTATACGTCAACAGAAAGTATCTC 57.482 33.333 0.00 0.00 35.73 2.75
2175 2219 8.969267 CATTATACGTCAACAGAAAGTATCTCC 58.031 37.037 0.00 0.00 35.73 3.71
2179 2223 5.098893 CGTCAACAGAAAGTATCTCCAGAG 58.901 45.833 0.00 0.00 35.73 3.35
2188 2232 7.759433 CAGAAAGTATCTCCAGAGAAAGAAGAC 59.241 40.741 0.66 0.00 41.36 3.01
2208 2252 9.814899 AGAAGACTCAGAAATAGTTCATACATG 57.185 33.333 5.62 0.00 36.09 3.21
2209 2253 9.809096 GAAGACTCAGAAATAGTTCATACATGA 57.191 33.333 5.62 0.00 36.09 3.07
2254 2298 3.654178 GGACTATAACTTCCGCGCA 57.346 52.632 8.75 0.00 0.00 6.09
2326 2375 6.389830 TTGTGCTACATTGTTCAAGAATGT 57.610 33.333 16.49 16.49 44.40 2.71
2327 2376 6.389830 TGTGCTACATTGTTCAAGAATGTT 57.610 33.333 17.37 3.46 40.39 2.71
2328 2377 7.503521 TGTGCTACATTGTTCAAGAATGTTA 57.496 32.000 17.37 3.48 40.39 2.41
2363 2414 5.208294 ACTCTCCAGGGTCTTACAGAATA 57.792 43.478 0.00 0.00 0.00 1.75
2377 2428 9.291664 GTCTTACAGAATAGACAGTAATGTGAC 57.708 37.037 0.00 0.00 40.35 3.67
2378 2429 9.020731 TCTTACAGAATAGACAGTAATGTGACA 57.979 33.333 0.00 0.00 0.00 3.58
2379 2430 9.809096 CTTACAGAATAGACAGTAATGTGACAT 57.191 33.333 0.00 0.00 0.00 3.06
2380 2431 9.586435 TTACAGAATAGACAGTAATGTGACATG 57.414 33.333 0.00 0.00 0.00 3.21
2381 2432 7.044181 ACAGAATAGACAGTAATGTGACATGG 58.956 38.462 0.00 0.00 0.00 3.66
2382 2433 7.044181 CAGAATAGACAGTAATGTGACATGGT 58.956 38.462 0.00 0.00 0.00 3.55
2383 2434 7.010830 CAGAATAGACAGTAATGTGACATGGTG 59.989 40.741 0.00 0.00 0.00 4.17
2384 2435 3.942829 AGACAGTAATGTGACATGGTGG 58.057 45.455 0.00 0.00 0.00 4.61
2385 2436 3.582647 AGACAGTAATGTGACATGGTGGA 59.417 43.478 0.00 0.00 0.00 4.02
2392 2443 3.011566 TGTGACATGGTGGAAAGTGTT 57.988 42.857 0.00 0.00 0.00 3.32
2432 2485 7.665690 TGGAGCAATGTGTGTTTATGTTTATT 58.334 30.769 0.00 0.00 0.00 1.40
2497 2551 7.459795 TGAATAATTGATTGGTGTGCTGTTA 57.540 32.000 0.00 0.00 0.00 2.41
2528 2583 7.670559 ACCGCTGATCTAGGAAAATACTATACT 59.329 37.037 8.33 0.00 0.00 2.12
2529 2584 9.175312 CCGCTGATCTAGGAAAATACTATACTA 57.825 37.037 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 3.891366 ACCTTGTTTGCTTGCTAGTCAAT 59.109 39.130 0.00 0.00 33.57 2.57
82 85 5.835819 TGGTATGTTGAAAATTTCACAGGGA 59.164 36.000 8.06 0.00 39.87 4.20
85 88 9.480053 AAATCTGGTATGTTGAAAATTTCACAG 57.520 29.630 8.06 10.89 39.87 3.66
135 139 1.138247 CGGTCGAAACCCTAGTCGG 59.862 63.158 0.00 0.00 43.21 4.79
139 143 0.455005 GTCTCCGGTCGAAACCCTAG 59.545 60.000 0.00 0.00 43.21 3.02
148 152 2.921538 GATGACGCTGTCTCCGGTCG 62.922 65.000 0.00 0.00 33.15 4.79
163 167 1.965930 GTTGTGCTGGTGGCGATGA 60.966 57.895 0.00 0.00 45.43 2.92
166 170 2.899838 GTGTTGTGCTGGTGGCGA 60.900 61.111 0.00 0.00 45.43 5.54
184 188 3.760035 GCTCTCCCTCGTTGCCGA 61.760 66.667 0.00 0.00 41.73 5.54
200 204 1.821332 CAATCTCCCCTCTTGCGGC 60.821 63.158 0.00 0.00 0.00 6.53
201 205 1.153086 CCAATCTCCCCTCTTGCGG 60.153 63.158 0.00 0.00 0.00 5.69
211 215 0.815734 TTCGTCGTCCTCCAATCTCC 59.184 55.000 0.00 0.00 0.00 3.71
212 216 1.799548 GCTTCGTCGTCCTCCAATCTC 60.800 57.143 0.00 0.00 0.00 2.75
227 231 0.826715 TTCCATCCTCTCCTGCTTCG 59.173 55.000 0.00 0.00 0.00 3.79
234 238 2.402564 TGGTCTGATTCCATCCTCTCC 58.597 52.381 0.00 0.00 0.00 3.71
276 280 0.830648 TCTGGTAAGATTGCCTCCCG 59.169 55.000 1.33 0.00 33.70 5.14
341 345 0.038251 TGCGCTCTTCGTCTGTGAAT 60.038 50.000 9.73 0.00 41.07 2.57
342 346 0.939577 GTGCGCTCTTCGTCTGTGAA 60.940 55.000 9.73 0.00 41.07 3.18
440 444 0.877213 GTTGTCGTTGGTAGCACCGT 60.877 55.000 11.67 0.00 42.58 4.83
465 469 1.370587 GACCGAGTCTGACTCCGAGG 61.371 65.000 27.20 24.05 42.12 4.63
470 474 3.311322 CAGTATGAGACCGAGTCTGACTC 59.689 52.174 24.50 24.50 43.53 3.36
481 485 0.462759 GGGCACTGCAGTATGAGACC 60.463 60.000 21.20 15.45 39.69 3.85
482 486 0.250234 TGGGCACTGCAGTATGAGAC 59.750 55.000 21.20 9.37 39.69 3.36
483 487 0.983467 TTGGGCACTGCAGTATGAGA 59.017 50.000 21.20 3.04 39.69 3.27
492 496 0.887387 TAGTCGGTTTTGGGCACTGC 60.887 55.000 0.00 0.00 0.00 4.40
530 534 2.397751 CATGTGTTGGATCTCCGGC 58.602 57.895 0.00 0.00 39.43 6.13
565 569 1.096386 CACCCTCCTCTCTACCGTCG 61.096 65.000 0.00 0.00 0.00 5.12
568 572 0.466555 CCTCACCCTCCTCTCTACCG 60.467 65.000 0.00 0.00 0.00 4.02
585 589 1.928714 GAGTCGTCCTCTCCCTCCCT 61.929 65.000 0.00 0.00 37.22 4.20
597 601 2.750637 TGGCTCCCTCGAGTCGTC 60.751 66.667 13.12 1.04 44.19 4.20
599 603 3.827898 GGTGGCTCCCTCGAGTCG 61.828 72.222 12.31 6.09 44.19 4.18
605 609 2.683933 TTCCTCGGTGGCTCCCTC 60.684 66.667 0.00 0.00 35.26 4.30
630 634 1.812113 TTCTTCCCTCTCCCTCCGGT 61.812 60.000 0.00 0.00 0.00 5.28
641 645 1.398234 CCCTCCTCCCTTCTTCCCT 59.602 63.158 0.00 0.00 0.00 4.20
642 646 1.694525 CCCCTCCTCCCTTCTTCCC 60.695 68.421 0.00 0.00 0.00 3.97
643 647 0.253207 TTCCCCTCCTCCCTTCTTCC 60.253 60.000 0.00 0.00 0.00 3.46
644 648 1.208706 CTTCCCCTCCTCCCTTCTTC 58.791 60.000 0.00 0.00 0.00 2.87
645 649 0.916845 GCTTCCCCTCCTCCCTTCTT 60.917 60.000 0.00 0.00 0.00 2.52
646 650 1.307430 GCTTCCCCTCCTCCCTTCT 60.307 63.158 0.00 0.00 0.00 2.85
647 651 2.736826 CGCTTCCCCTCCTCCCTTC 61.737 68.421 0.00 0.00 0.00 3.46
648 652 2.689034 CGCTTCCCCTCCTCCCTT 60.689 66.667 0.00 0.00 0.00 3.95
662 666 4.159108 CCTACCTCCCCCTCCGCT 62.159 72.222 0.00 0.00 0.00 5.52
682 700 3.237741 CGATGGCTCTCCTCCCCC 61.238 72.222 0.00 0.00 0.00 5.40
683 701 3.237741 CCGATGGCTCTCCTCCCC 61.238 72.222 0.00 0.00 0.00 4.81
685 703 2.658321 TACCCCGATGGCTCTCCTCC 62.658 65.000 0.00 0.00 37.83 4.30
699 717 2.241430 ACTACAATCCAAAGGCTACCCC 59.759 50.000 0.00 0.00 0.00 4.95
701 719 8.919777 ATAAATACTACAATCCAAAGGCTACC 57.080 34.615 0.00 0.00 0.00 3.18
1050 1068 1.307866 GGAGGGGGATGGTGAGGAA 60.308 63.158 0.00 0.00 0.00 3.36
1136 1154 0.898789 GACCTTCGGGGACTCAGTGA 60.899 60.000 0.00 0.00 40.03 3.41
1329 1347 1.139734 CACCTCCTCGATGACCACG 59.860 63.158 0.00 0.00 0.00 4.94
1586 1605 7.035612 GGCAATTACAAGAGGAATACAAAAGG 58.964 38.462 0.00 0.00 0.00 3.11
1682 1706 8.208718 TGCAACATCCAGTAATTATACAAGAC 57.791 34.615 0.00 0.00 34.29 3.01
1744 1768 9.896645 AATCTCTACAAACATGACAGTATCATT 57.103 29.630 0.00 0.00 46.54 2.57
1771 1795 5.221501 ACAAACTCTAAAACTGGCAATGCAT 60.222 36.000 7.79 0.00 0.00 3.96
1869 1893 6.100004 TCCGAGTCTTGATAACAAATCTCAC 58.900 40.000 13.20 0.00 36.54 3.51
1871 1895 6.814146 ACTTCCGAGTCTTGATAACAAATCTC 59.186 38.462 0.00 6.71 35.49 2.75
1876 1920 5.209818 ACACTTCCGAGTCTTGATAACAA 57.790 39.130 0.00 0.00 32.54 2.83
1887 1931 1.961394 TGCACTTCTACACTTCCGAGT 59.039 47.619 0.00 0.00 36.25 4.18
1888 1932 2.724977 TGCACTTCTACACTTCCGAG 57.275 50.000 0.00 0.00 0.00 4.63
1890 1934 1.394917 GCATGCACTTCTACACTTCCG 59.605 52.381 14.21 0.00 0.00 4.30
1897 1941 2.159043 TGGCTAGAGCATGCACTTCTAC 60.159 50.000 22.83 12.67 44.36 2.59
1899 1943 0.907486 TGGCTAGAGCATGCACTTCT 59.093 50.000 22.83 17.00 44.36 2.85
1900 1944 1.742761 TTGGCTAGAGCATGCACTTC 58.257 50.000 22.83 14.30 44.36 3.01
1901 1945 2.022195 CATTGGCTAGAGCATGCACTT 58.978 47.619 22.83 8.33 44.36 3.16
1902 1946 1.676746 CATTGGCTAGAGCATGCACT 58.323 50.000 21.45 21.45 44.36 4.40
1903 1947 0.030369 GCATTGGCTAGAGCATGCAC 59.970 55.000 21.98 14.59 44.74 4.57
1904 1948 2.411535 GCATTGGCTAGAGCATGCA 58.588 52.632 21.98 0.00 44.74 3.96
1905 1949 0.742505 TTGCATTGGCTAGAGCATGC 59.257 50.000 10.51 10.51 45.25 4.06
1906 1950 1.066605 GGTTGCATTGGCTAGAGCATG 59.933 52.381 3.54 0.90 44.36 4.06
1907 1951 1.341285 TGGTTGCATTGGCTAGAGCAT 60.341 47.619 3.54 0.00 44.36 3.79
1908 1952 0.038021 TGGTTGCATTGGCTAGAGCA 59.962 50.000 3.54 0.00 44.36 4.26
1909 1953 1.176527 TTGGTTGCATTGGCTAGAGC 58.823 50.000 0.00 0.00 41.91 4.09
1910 1954 3.940209 TTTTGGTTGCATTGGCTAGAG 57.060 42.857 0.00 0.00 41.91 2.43
1928 1972 4.938226 GTCTCTTCCATCAGATCGGTTTTT 59.062 41.667 0.00 0.00 0.00 1.94
1929 1973 4.223923 AGTCTCTTCCATCAGATCGGTTTT 59.776 41.667 0.00 0.00 0.00 2.43
1930 1974 3.772025 AGTCTCTTCCATCAGATCGGTTT 59.228 43.478 0.00 0.00 0.00 3.27
1931 1975 3.370104 AGTCTCTTCCATCAGATCGGTT 58.630 45.455 0.00 0.00 0.00 4.44
1932 1976 3.025322 AGTCTCTTCCATCAGATCGGT 57.975 47.619 0.00 0.00 0.00 4.69
1933 1977 3.505680 CCTAGTCTCTTCCATCAGATCGG 59.494 52.174 0.00 0.00 0.00 4.18
1934 1978 3.057596 GCCTAGTCTCTTCCATCAGATCG 60.058 52.174 0.00 0.00 0.00 3.69
1935 1979 3.894427 TGCCTAGTCTCTTCCATCAGATC 59.106 47.826 0.00 0.00 0.00 2.75
1936 1980 3.896888 CTGCCTAGTCTCTTCCATCAGAT 59.103 47.826 0.00 0.00 0.00 2.90
1937 1981 3.295093 CTGCCTAGTCTCTTCCATCAGA 58.705 50.000 0.00 0.00 0.00 3.27
1938 1982 2.224018 GCTGCCTAGTCTCTTCCATCAG 60.224 54.545 0.00 0.00 0.00 2.90
1939 1983 1.759445 GCTGCCTAGTCTCTTCCATCA 59.241 52.381 0.00 0.00 0.00 3.07
1940 1984 1.759445 TGCTGCCTAGTCTCTTCCATC 59.241 52.381 0.00 0.00 0.00 3.51
1941 1985 1.484240 GTGCTGCCTAGTCTCTTCCAT 59.516 52.381 0.00 0.00 0.00 3.41
1942 1986 0.898320 GTGCTGCCTAGTCTCTTCCA 59.102 55.000 0.00 0.00 0.00 3.53
1943 1987 0.898320 TGTGCTGCCTAGTCTCTTCC 59.102 55.000 0.00 0.00 0.00 3.46
1944 1988 2.977772 ATGTGCTGCCTAGTCTCTTC 57.022 50.000 0.00 0.00 0.00 2.87
1945 1989 5.508153 CGTATAATGTGCTGCCTAGTCTCTT 60.508 44.000 0.00 0.00 0.00 2.85
1946 1990 4.022762 CGTATAATGTGCTGCCTAGTCTCT 60.023 45.833 0.00 0.00 0.00 3.10
1947 1991 4.230657 CGTATAATGTGCTGCCTAGTCTC 58.769 47.826 0.00 0.00 0.00 3.36
1948 1992 3.637229 ACGTATAATGTGCTGCCTAGTCT 59.363 43.478 0.00 0.00 0.00 3.24
1949 1993 3.978687 ACGTATAATGTGCTGCCTAGTC 58.021 45.455 0.00 0.00 0.00 2.59
1950 1994 3.383505 TGACGTATAATGTGCTGCCTAGT 59.616 43.478 0.00 0.00 0.00 2.57
1951 1995 3.977427 TGACGTATAATGTGCTGCCTAG 58.023 45.455 0.00 0.00 0.00 3.02
1952 1996 4.116961 GTTGACGTATAATGTGCTGCCTA 58.883 43.478 0.00 0.00 0.00 3.93
1953 1997 2.936498 GTTGACGTATAATGTGCTGCCT 59.064 45.455 0.00 0.00 0.00 4.75
1954 1998 2.675844 TGTTGACGTATAATGTGCTGCC 59.324 45.455 0.00 0.00 0.00 4.85
1955 1999 3.370978 AGTGTTGACGTATAATGTGCTGC 59.629 43.478 0.00 0.00 0.00 5.25
1956 2000 5.445939 GGAAGTGTTGACGTATAATGTGCTG 60.446 44.000 0.00 0.00 0.00 4.41
1957 2001 4.630069 GGAAGTGTTGACGTATAATGTGCT 59.370 41.667 0.00 0.00 0.00 4.40
1958 2002 4.201783 GGGAAGTGTTGACGTATAATGTGC 60.202 45.833 0.00 0.00 0.00 4.57
1959 2003 4.331717 GGGGAAGTGTTGACGTATAATGTG 59.668 45.833 0.00 0.00 0.00 3.21
1960 2004 4.224370 AGGGGAAGTGTTGACGTATAATGT 59.776 41.667 0.00 0.00 0.00 2.71
1961 2005 4.766375 AGGGGAAGTGTTGACGTATAATG 58.234 43.478 0.00 0.00 0.00 1.90
1962 2006 4.468510 TGAGGGGAAGTGTTGACGTATAAT 59.531 41.667 0.00 0.00 0.00 1.28
1963 2007 3.833650 TGAGGGGAAGTGTTGACGTATAA 59.166 43.478 0.00 0.00 0.00 0.98
1964 2008 3.194116 GTGAGGGGAAGTGTTGACGTATA 59.806 47.826 0.00 0.00 0.00 1.47
1965 2009 2.028385 GTGAGGGGAAGTGTTGACGTAT 60.028 50.000 0.00 0.00 0.00 3.06
1966 2010 1.342174 GTGAGGGGAAGTGTTGACGTA 59.658 52.381 0.00 0.00 0.00 3.57
1967 2011 0.106149 GTGAGGGGAAGTGTTGACGT 59.894 55.000 0.00 0.00 0.00 4.34
1968 2012 0.944311 CGTGAGGGGAAGTGTTGACG 60.944 60.000 0.00 0.00 0.00 4.35
1969 2013 0.106149 ACGTGAGGGGAAGTGTTGAC 59.894 55.000 0.00 0.00 0.00 3.18
1970 2014 0.105964 CACGTGAGGGGAAGTGTTGA 59.894 55.000 10.90 0.00 0.00 3.18
1971 2015 0.179056 ACACGTGAGGGGAAGTGTTG 60.179 55.000 25.01 0.00 44.32 3.33
1972 2016 0.179056 CACACGTGAGGGGAAGTGTT 60.179 55.000 25.01 0.00 44.32 3.32
1973 2017 3.965660 ACACGTGAGGGGAAGTGT 58.034 55.556 25.01 0.00 42.26 3.55
1974 2018 1.301716 CCACACGTGAGGGGAAGTG 60.302 63.158 25.01 7.07 40.46 3.16
1975 2019 3.148084 CCACACGTGAGGGGAAGT 58.852 61.111 25.01 0.00 40.46 3.01
1976 2020 2.358737 GCCACACGTGAGGGGAAG 60.359 66.667 29.55 7.85 40.46 3.46
1977 2021 2.391724 GAAGCCACACGTGAGGGGAA 62.392 60.000 29.55 0.00 40.46 3.97
1978 2022 2.847234 AAGCCACACGTGAGGGGA 60.847 61.111 29.55 0.00 40.46 4.81
1979 2023 2.358737 GAAGCCACACGTGAGGGG 60.359 66.667 29.55 23.01 40.46 4.79
1980 2024 2.358737 GGAAGCCACACGTGAGGG 60.359 66.667 29.55 25.23 43.28 4.30
1981 2025 1.374758 GAGGAAGCCACACGTGAGG 60.375 63.158 25.64 25.64 0.00 3.86
1982 2026 0.668706 CTGAGGAAGCCACACGTGAG 60.669 60.000 25.01 15.20 0.00 3.51
1983 2027 1.367471 CTGAGGAAGCCACACGTGA 59.633 57.895 25.01 0.00 0.00 4.35
1984 2028 1.669115 CCTGAGGAAGCCACACGTG 60.669 63.158 15.48 15.48 0.00 4.49
1985 2029 2.743718 CCTGAGGAAGCCACACGT 59.256 61.111 0.00 0.00 0.00 4.49
1986 2030 2.743928 GCCTGAGGAAGCCACACG 60.744 66.667 0.65 0.00 0.00 4.49
1992 2036 0.036294 ACGTTTAGGCCTGAGGAAGC 60.036 55.000 17.99 2.20 0.00 3.86
1993 2037 1.676014 CCACGTTTAGGCCTGAGGAAG 60.676 57.143 17.99 4.31 0.00 3.46
1994 2038 0.323629 CCACGTTTAGGCCTGAGGAA 59.676 55.000 17.99 0.00 0.00 3.36
1995 2039 0.543410 TCCACGTTTAGGCCTGAGGA 60.543 55.000 17.99 9.35 0.00 3.71
1996 2040 0.391263 GTCCACGTTTAGGCCTGAGG 60.391 60.000 17.99 12.15 0.00 3.86
1997 2041 0.391263 GGTCCACGTTTAGGCCTGAG 60.391 60.000 17.99 6.27 0.00 3.35
1998 2042 1.675219 GGTCCACGTTTAGGCCTGA 59.325 57.895 17.99 3.42 0.00 3.86
1999 2043 1.740296 CGGTCCACGTTTAGGCCTG 60.740 63.158 17.99 0.00 37.93 4.85
2000 2044 1.474332 TTCGGTCCACGTTTAGGCCT 61.474 55.000 11.78 11.78 44.69 5.19
2001 2045 0.603439 TTTCGGTCCACGTTTAGGCC 60.603 55.000 0.00 0.00 44.69 5.19
2002 2046 0.794473 CTTTCGGTCCACGTTTAGGC 59.206 55.000 0.00 0.00 44.69 3.93
2003 2047 1.796459 CACTTTCGGTCCACGTTTAGG 59.204 52.381 0.00 0.00 44.69 2.69
2004 2048 1.796459 CCACTTTCGGTCCACGTTTAG 59.204 52.381 0.00 0.00 44.69 1.85
2005 2049 1.540797 CCCACTTTCGGTCCACGTTTA 60.541 52.381 0.00 0.00 44.69 2.01
2006 2050 0.816421 CCCACTTTCGGTCCACGTTT 60.816 55.000 0.00 0.00 44.69 3.60
2007 2051 1.227734 CCCACTTTCGGTCCACGTT 60.228 57.895 0.00 0.00 44.69 3.99
2008 2052 2.424302 CCCACTTTCGGTCCACGT 59.576 61.111 0.00 0.00 44.69 4.49
2009 2053 3.047877 GCCCACTTTCGGTCCACG 61.048 66.667 0.00 0.00 46.11 4.94
2010 2054 1.966451 CAGCCCACTTTCGGTCCAC 60.966 63.158 0.00 0.00 0.00 4.02
2011 2055 2.429930 CAGCCCACTTTCGGTCCA 59.570 61.111 0.00 0.00 0.00 4.02
2012 2056 3.056328 GCAGCCCACTTTCGGTCC 61.056 66.667 0.00 0.00 0.00 4.46
2013 2057 1.244019 ATTGCAGCCCACTTTCGGTC 61.244 55.000 0.00 0.00 0.00 4.79
2014 2058 0.827507 AATTGCAGCCCACTTTCGGT 60.828 50.000 0.00 0.00 0.00 4.69
2015 2059 0.318120 AAATTGCAGCCCACTTTCGG 59.682 50.000 0.00 0.00 0.00 4.30
2016 2060 3.296322 TTAAATTGCAGCCCACTTTCG 57.704 42.857 0.00 0.00 30.20 3.46
2017 2061 5.535043 CAATTAAATTGCAGCCCACTTTC 57.465 39.130 0.00 0.00 32.92 2.62
2029 2073 0.922717 CGGCTGGCGCAATTAAATTG 59.077 50.000 11.55 0.00 43.06 2.32
2030 2074 0.179113 CCGGCTGGCGCAATTAAATT 60.179 50.000 18.95 0.00 38.10 1.82
2031 2075 1.437160 CCGGCTGGCGCAATTAAAT 59.563 52.632 18.95 0.00 38.10 1.40
2032 2076 2.705821 CCCGGCTGGCGCAATTAAA 61.706 57.895 18.95 0.00 38.10 1.52
2033 2077 3.137459 CCCGGCTGGCGCAATTAA 61.137 61.111 18.95 0.00 38.10 1.40
2034 2078 4.418328 ACCCGGCTGGCGCAATTA 62.418 61.111 18.95 0.00 37.83 1.40
2040 2084 4.697756 TTCAAGACCCGGCTGGCG 62.698 66.667 17.39 17.39 37.83 5.69
2041 2085 3.056328 GTTCAAGACCCGGCTGGC 61.056 66.667 5.85 0.00 37.83 4.85
2042 2086 1.376037 GAGTTCAAGACCCGGCTGG 60.376 63.158 3.88 3.88 41.37 4.85
2043 2087 0.250295 TTGAGTTCAAGACCCGGCTG 60.250 55.000 0.00 0.00 0.00 4.85
2044 2088 2.142220 TTGAGTTCAAGACCCGGCT 58.858 52.632 0.00 0.00 0.00 5.52
2045 2089 4.792087 TTGAGTTCAAGACCCGGC 57.208 55.556 0.00 0.00 0.00 6.13
2061 2105 1.757699 GTATCGGAGCCAAGAGGTCTT 59.242 52.381 0.00 0.00 42.87 3.01
2062 2106 1.404843 GTATCGGAGCCAAGAGGTCT 58.595 55.000 0.00 0.00 42.87 3.85
2063 2107 0.389757 GGTATCGGAGCCAAGAGGTC 59.610 60.000 0.00 0.00 42.55 3.85
2064 2108 0.325296 TGGTATCGGAGCCAAGAGGT 60.325 55.000 2.13 0.00 37.19 3.85
2065 2109 1.051812 ATGGTATCGGAGCCAAGAGG 58.948 55.000 7.94 0.00 38.38 3.69
2066 2110 1.414181 ACATGGTATCGGAGCCAAGAG 59.586 52.381 11.73 6.85 38.38 2.85
2067 2111 1.496060 ACATGGTATCGGAGCCAAGA 58.504 50.000 11.73 0.00 38.38 3.02
2068 2112 2.628178 TCTACATGGTATCGGAGCCAAG 59.372 50.000 7.94 6.62 38.38 3.61
2069 2113 2.673258 TCTACATGGTATCGGAGCCAA 58.327 47.619 7.94 0.00 38.38 4.52
2070 2114 2.375014 TCTACATGGTATCGGAGCCA 57.625 50.000 6.55 6.55 39.33 4.75
2071 2115 2.628657 ACTTCTACATGGTATCGGAGCC 59.371 50.000 0.00 0.00 0.00 4.70
2072 2116 3.643763 CACTTCTACATGGTATCGGAGC 58.356 50.000 0.00 0.00 0.00 4.70
2073 2117 3.068165 TGCACTTCTACATGGTATCGGAG 59.932 47.826 0.00 0.00 0.00 4.63
2074 2118 3.028130 TGCACTTCTACATGGTATCGGA 58.972 45.455 0.00 0.00 0.00 4.55
2075 2119 3.452755 TGCACTTCTACATGGTATCGG 57.547 47.619 0.00 0.00 0.00 4.18
2076 2120 3.185188 GCATGCACTTCTACATGGTATCG 59.815 47.826 14.21 0.00 43.13 2.92
2077 2121 4.739046 GCATGCACTTCTACATGGTATC 57.261 45.455 14.21 0.00 43.13 2.24
2080 2124 2.795231 AGCATGCACTTCTACATGGT 57.205 45.000 21.98 2.10 46.94 3.55
2081 2125 2.915349 AGAGCATGCACTTCTACATGG 58.085 47.619 21.98 0.00 43.13 3.66
2082 2126 3.493877 GCTAGAGCATGCACTTCTACATG 59.506 47.826 22.83 8.90 45.19 3.21
2083 2127 3.494048 GGCTAGAGCATGCACTTCTACAT 60.494 47.826 22.83 0.00 44.36 2.29
2084 2128 2.159043 GGCTAGAGCATGCACTTCTACA 60.159 50.000 22.83 3.70 44.36 2.74
2085 2129 2.159043 TGGCTAGAGCATGCACTTCTAC 60.159 50.000 22.83 12.67 44.36 2.59
2086 2130 2.110578 TGGCTAGAGCATGCACTTCTA 58.889 47.619 22.83 17.21 44.36 2.10
2087 2131 0.907486 TGGCTAGAGCATGCACTTCT 59.093 50.000 22.83 17.00 44.36 2.85
2088 2132 1.742761 TTGGCTAGAGCATGCACTTC 58.257 50.000 22.83 14.30 44.36 3.01
2089 2133 2.022195 CATTGGCTAGAGCATGCACTT 58.978 47.619 22.83 8.33 44.36 3.16
2090 2134 1.676746 CATTGGCTAGAGCATGCACT 58.323 50.000 21.45 21.45 44.36 4.40
2091 2135 0.030369 GCATTGGCTAGAGCATGCAC 59.970 55.000 21.98 14.59 44.74 4.57
2092 2136 2.411535 GCATTGGCTAGAGCATGCA 58.588 52.632 21.98 0.00 44.74 3.96
2093 2137 0.742505 TTGCATTGGCTAGAGCATGC 59.257 50.000 10.51 10.51 45.25 4.06
2094 2138 1.066605 GGTTGCATTGGCTAGAGCATG 59.933 52.381 3.54 0.90 44.36 4.06
2095 2139 1.341285 TGGTTGCATTGGCTAGAGCAT 60.341 47.619 3.54 0.00 44.36 3.79
2096 2140 0.038021 TGGTTGCATTGGCTAGAGCA 59.962 50.000 3.54 0.00 44.36 4.26
2097 2141 1.176527 TTGGTTGCATTGGCTAGAGC 58.823 50.000 0.00 0.00 41.91 4.09
2098 2142 3.940209 TTTTGGTTGCATTGGCTAGAG 57.060 42.857 0.00 0.00 41.91 2.43
2116 2160 4.938226 GTCTCTTCCATCAGATCGGTTTTT 59.062 41.667 0.00 0.00 0.00 1.94
2117 2161 4.223923 AGTCTCTTCCATCAGATCGGTTTT 59.776 41.667 0.00 0.00 0.00 2.43
2118 2162 3.772025 AGTCTCTTCCATCAGATCGGTTT 59.228 43.478 0.00 0.00 0.00 3.27
2119 2163 3.370104 AGTCTCTTCCATCAGATCGGTT 58.630 45.455 0.00 0.00 0.00 4.44
2120 2164 3.025322 AGTCTCTTCCATCAGATCGGT 57.975 47.619 0.00 0.00 0.00 4.69
2121 2165 3.505680 CCTAGTCTCTTCCATCAGATCGG 59.494 52.174 0.00 0.00 0.00 4.18
2122 2166 3.057596 GCCTAGTCTCTTCCATCAGATCG 60.058 52.174 0.00 0.00 0.00 3.69
2123 2167 3.894427 TGCCTAGTCTCTTCCATCAGATC 59.106 47.826 0.00 0.00 0.00 2.75
2124 2168 3.921104 TGCCTAGTCTCTTCCATCAGAT 58.079 45.455 0.00 0.00 0.00 2.90
2125 2169 3.388552 TGCCTAGTCTCTTCCATCAGA 57.611 47.619 0.00 0.00 0.00 3.27
2126 2170 3.196469 TGTTGCCTAGTCTCTTCCATCAG 59.804 47.826 0.00 0.00 0.00 2.90
2127 2171 3.055819 GTGTTGCCTAGTCTCTTCCATCA 60.056 47.826 0.00 0.00 0.00 3.07
2128 2172 3.055819 TGTGTTGCCTAGTCTCTTCCATC 60.056 47.826 0.00 0.00 0.00 3.51
2129 2173 2.906389 TGTGTTGCCTAGTCTCTTCCAT 59.094 45.455 0.00 0.00 0.00 3.41
2130 2174 2.325484 TGTGTTGCCTAGTCTCTTCCA 58.675 47.619 0.00 0.00 0.00 3.53
2131 2175 3.618690 ATGTGTTGCCTAGTCTCTTCC 57.381 47.619 0.00 0.00 0.00 3.46
2132 2176 6.418226 CGTATAATGTGTTGCCTAGTCTCTTC 59.582 42.308 0.00 0.00 0.00 2.87
2133 2177 6.127423 ACGTATAATGTGTTGCCTAGTCTCTT 60.127 38.462 0.00 0.00 0.00 2.85
2134 2178 5.360144 ACGTATAATGTGTTGCCTAGTCTCT 59.640 40.000 0.00 0.00 0.00 3.10
2135 2179 5.589192 ACGTATAATGTGTTGCCTAGTCTC 58.411 41.667 0.00 0.00 0.00 3.36
2136 2180 5.126545 TGACGTATAATGTGTTGCCTAGTCT 59.873 40.000 0.00 0.00 0.00 3.24
2137 2181 5.345702 TGACGTATAATGTGTTGCCTAGTC 58.654 41.667 0.00 0.00 0.00 2.59
2138 2182 5.333299 TGACGTATAATGTGTTGCCTAGT 57.667 39.130 0.00 0.00 0.00 2.57
2139 2183 5.579119 TGTTGACGTATAATGTGTTGCCTAG 59.421 40.000 0.00 0.00 0.00 3.02
2140 2184 5.480205 TGTTGACGTATAATGTGTTGCCTA 58.520 37.500 0.00 0.00 0.00 3.93
2141 2185 4.320023 TGTTGACGTATAATGTGTTGCCT 58.680 39.130 0.00 0.00 0.00 4.75
2142 2186 4.390603 TCTGTTGACGTATAATGTGTTGCC 59.609 41.667 0.00 0.00 0.00 4.52
2143 2187 5.524511 TCTGTTGACGTATAATGTGTTGC 57.475 39.130 0.00 0.00 0.00 4.17
2144 2188 7.572759 ACTTTCTGTTGACGTATAATGTGTTG 58.427 34.615 0.00 0.00 0.00 3.33
2145 2189 7.724305 ACTTTCTGTTGACGTATAATGTGTT 57.276 32.000 0.00 0.00 0.00 3.32
2146 2190 8.997621 ATACTTTCTGTTGACGTATAATGTGT 57.002 30.769 0.00 0.00 0.00 3.72
2147 2191 9.302345 AGATACTTTCTGTTGACGTATAATGTG 57.698 33.333 0.00 0.00 31.79 3.21
2148 2192 9.517609 GAGATACTTTCTGTTGACGTATAATGT 57.482 33.333 0.00 0.00 33.74 2.71
2149 2193 8.969267 GGAGATACTTTCTGTTGACGTATAATG 58.031 37.037 0.00 0.00 33.74 1.90
2150 2194 8.692710 TGGAGATACTTTCTGTTGACGTATAAT 58.307 33.333 0.00 0.00 33.74 1.28
2151 2195 8.058667 TGGAGATACTTTCTGTTGACGTATAA 57.941 34.615 0.00 0.00 33.74 0.98
2152 2196 7.555195 TCTGGAGATACTTTCTGTTGACGTATA 59.445 37.037 0.00 0.00 33.74 1.47
2153 2197 6.377429 TCTGGAGATACTTTCTGTTGACGTAT 59.623 38.462 0.00 0.00 33.74 3.06
2154 2198 5.708697 TCTGGAGATACTTTCTGTTGACGTA 59.291 40.000 0.00 0.00 33.74 3.57
2155 2199 4.523173 TCTGGAGATACTTTCTGTTGACGT 59.477 41.667 0.00 0.00 33.74 4.34
2156 2200 5.060662 TCTGGAGATACTTTCTGTTGACG 57.939 43.478 0.00 0.00 33.74 4.35
2157 2201 6.274157 TCTCTGGAGATACTTTCTGTTGAC 57.726 41.667 0.00 0.00 33.74 3.18
2158 2202 6.918067 TTCTCTGGAGATACTTTCTGTTGA 57.082 37.500 0.88 0.00 37.29 3.18
2159 2203 7.382110 TCTTTCTCTGGAGATACTTTCTGTTG 58.618 38.462 0.88 0.00 37.29 3.33
2160 2204 7.546250 TCTTTCTCTGGAGATACTTTCTGTT 57.454 36.000 0.88 0.00 37.29 3.16
2161 2205 7.453126 TCTTCTTTCTCTGGAGATACTTTCTGT 59.547 37.037 0.88 0.00 37.29 3.41
2162 2206 7.759433 GTCTTCTTTCTCTGGAGATACTTTCTG 59.241 40.741 0.88 0.00 37.29 3.02
2163 2207 7.673926 AGTCTTCTTTCTCTGGAGATACTTTCT 59.326 37.037 0.88 0.00 37.29 2.52
2164 2208 7.836842 AGTCTTCTTTCTCTGGAGATACTTTC 58.163 38.462 0.88 0.00 37.29 2.62
2165 2209 7.453126 TGAGTCTTCTTTCTCTGGAGATACTTT 59.547 37.037 0.88 0.00 37.29 2.66
2166 2210 6.951198 TGAGTCTTCTTTCTCTGGAGATACTT 59.049 38.462 0.88 0.00 37.29 2.24
2167 2211 6.489603 TGAGTCTTCTTTCTCTGGAGATACT 58.510 40.000 0.88 0.23 37.29 2.12
2168 2212 6.601613 TCTGAGTCTTCTTTCTCTGGAGATAC 59.398 42.308 0.88 0.00 37.29 2.24
2169 2213 6.726379 TCTGAGTCTTCTTTCTCTGGAGATA 58.274 40.000 0.88 0.00 37.29 1.98
2170 2214 5.579047 TCTGAGTCTTCTTTCTCTGGAGAT 58.421 41.667 0.88 0.00 37.29 2.75
2171 2215 4.991776 TCTGAGTCTTCTTTCTCTGGAGA 58.008 43.478 0.00 0.00 35.27 3.71
2172 2216 5.720371 TTCTGAGTCTTCTTTCTCTGGAG 57.280 43.478 0.00 0.00 32.90 3.86
2173 2217 6.678568 ATTTCTGAGTCTTCTTTCTCTGGA 57.321 37.500 0.00 0.00 32.90 3.86
2174 2218 7.610865 ACTATTTCTGAGTCTTCTTTCTCTGG 58.389 38.462 0.00 0.00 32.90 3.86
2175 2219 9.139174 GAACTATTTCTGAGTCTTCTTTCTCTG 57.861 37.037 0.00 0.00 0.00 3.35
2208 2252 8.779354 ATTGACCTTGACTAAATACAGAGTTC 57.221 34.615 0.00 0.00 0.00 3.01
2209 2253 9.220767 GAATTGACCTTGACTAAATACAGAGTT 57.779 33.333 0.00 0.00 0.00 3.01
2212 2256 6.816640 CCGAATTGACCTTGACTAAATACAGA 59.183 38.462 0.00 0.00 0.00 3.41
2283 2327 8.685427 AGCACAATATGATGTAGCATTGTTAAA 58.315 29.630 0.00 0.00 39.06 1.52
2284 2328 8.224389 AGCACAATATGATGTAGCATTGTTAA 57.776 30.769 0.00 0.00 39.06 2.01
2326 2375 6.323996 CCCTGGAGAGTAATGTCATGTAGTAA 59.676 42.308 0.00 0.00 0.00 2.24
2327 2376 5.833667 CCCTGGAGAGTAATGTCATGTAGTA 59.166 44.000 0.00 0.00 0.00 1.82
2328 2377 4.651503 CCCTGGAGAGTAATGTCATGTAGT 59.348 45.833 0.00 0.00 0.00 2.73
2363 2414 3.582647 TCCACCATGTCACATTACTGTCT 59.417 43.478 0.00 0.00 31.62 3.41
2384 2435 2.367567 GGGGGAAAAAGGGAACACTTTC 59.632 50.000 2.47 0.00 39.63 2.62
2385 2436 2.293251 TGGGGGAAAAAGGGAACACTTT 60.293 45.455 0.00 0.00 42.17 2.66
2392 2443 2.905018 TCCATGGGGGAAAAAGGGA 58.095 52.632 13.02 0.00 44.80 4.20
2438 2492 8.531982 ACTGACTGTACATGTTATCAAGTGTAT 58.468 33.333 2.30 0.00 30.65 2.29
2439 2493 7.892609 ACTGACTGTACATGTTATCAAGTGTA 58.107 34.615 2.30 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.