Multiple sequence alignment - TraesCS3D01G239900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G239900 chr3D 100.000 2594 0 0 1 2594 332328014 332325421 0.000000e+00 4791.0
1 TraesCS3D01G239900 chr3D 88.947 570 42 8 1707 2264 332169727 332169167 0.000000e+00 684.0
2 TraesCS3D01G239900 chr3D 86.005 443 37 9 1707 2137 332237370 332236941 3.940000e-123 451.0
3 TraesCS3D01G239900 chr3D 90.500 200 18 1 2392 2591 332236789 332236591 1.980000e-66 263.0
4 TraesCS3D01G239900 chr3D 93.793 145 9 0 2120 2264 332236930 332236786 4.350000e-53 219.0
5 TraesCS3D01G239900 chr3D 92.453 106 8 0 2486 2591 332169100 332168995 4.470000e-33 152.0
6 TraesCS3D01G239900 chr3D 87.097 124 15 1 251 373 332328285 332328408 3.480000e-29 139.0
7 TraesCS3D01G239900 chr3B 95.014 1745 45 18 486 2208 431517786 431516062 0.000000e+00 2702.0
8 TraesCS3D01G239900 chr3B 95.415 349 15 1 2243 2591 431516078 431515731 2.920000e-154 555.0
9 TraesCS3D01G239900 chr3B 87.359 443 35 8 1707 2137 431259893 431259460 3.000000e-134 488.0
10 TraesCS3D01G239900 chr3B 90.000 200 19 1 2392 2591 431259307 431259109 9.210000e-65 257.0
11 TraesCS3D01G239900 chr3B 95.000 140 6 1 2125 2264 431259442 431259304 4.350000e-53 219.0
12 TraesCS3D01G239900 chr3B 95.312 128 5 1 372 499 431517930 431517804 4.380000e-48 202.0
13 TraesCS3D01G239900 chr3B 90.511 137 13 0 2261 2397 798537470 798537334 5.700000e-42 182.0
14 TraesCS3D01G239900 chr3B 85.246 122 16 2 254 375 57427165 57427284 9.750000e-25 124.0
15 TraesCS3D01G239900 chr3B 89.109 101 10 1 268 368 267576046 267575947 9.750000e-25 124.0
16 TraesCS3D01G239900 chr3A 95.011 1343 38 6 940 2263 449656996 449655664 0.000000e+00 2082.0
17 TraesCS3D01G239900 chr3A 94.260 331 12 5 389 714 449658829 449658501 1.390000e-137 499.0
18 TraesCS3D01G239900 chr3A 86.005 443 41 8 1707 2137 449514077 449513644 3.040000e-124 455.0
19 TraesCS3D01G239900 chr3A 93.191 235 7 6 722 949 449658469 449658237 1.150000e-88 337.0
20 TraesCS3D01G239900 chr3A 94.089 203 11 1 2392 2594 449655666 449655465 9.020000e-80 307.0
21 TraesCS3D01G239900 chr3A 90.000 200 19 1 2392 2591 449513490 449513292 9.210000e-65 257.0
22 TraesCS3D01G239900 chr3A 95.714 140 6 0 2125 2264 449513626 449513487 2.600000e-55 226.0
23 TraesCS3D01G239900 chr2D 98.383 371 6 0 1 371 119071981 119071611 0.000000e+00 652.0
24 TraesCS3D01G239900 chr2D 85.827 127 16 2 251 376 119072252 119072377 1.620000e-27 134.0
25 TraesCS3D01G239900 chr2D 96.000 50 2 0 2346 2395 95186334 95186285 5.950000e-12 82.4
26 TraesCS3D01G239900 chr7A 85.591 465 67 0 1124 1588 424534831 424535295 3.000000e-134 488.0
27 TraesCS3D01G239900 chr7A 83.951 162 20 3 215 371 340169622 340169462 1.610000e-32 150.0
28 TraesCS3D01G239900 chr7A 81.988 161 23 3 216 371 338119298 338119139 5.820000e-27 132.0
29 TraesCS3D01G239900 chr7D 85.161 465 68 1 1124 1588 376941261 376941724 2.340000e-130 475.0
30 TraesCS3D01G239900 chr5A 80.899 623 99 14 996 1601 4080757 4081376 8.400000e-130 473.0
31 TraesCS3D01G239900 chr5A 92.126 127 10 0 2262 2388 54638386 54638260 2.050000e-41 180.0
32 TraesCS3D01G239900 chr4A 81.037 617 98 10 1001 1601 17887880 17888493 8.400000e-130 473.0
33 TraesCS3D01G239900 chr4A 93.151 73 5 0 10 82 538870402 538870330 9.820000e-20 108.0
34 TraesCS3D01G239900 chr7B 80.833 600 103 6 1001 1588 372008150 372008749 6.540000e-126 460.0
35 TraesCS3D01G239900 chr2A 80.492 610 102 14 994 1588 764913447 764914054 3.940000e-123 451.0
36 TraesCS3D01G239900 chr2B 80.435 598 97 15 1007 1588 798702764 798702171 3.060000e-119 438.0
37 TraesCS3D01G239900 chr2B 96.970 33 1 0 2360 2392 513281378 513281346 3.610000e-04 56.5
38 TraesCS3D01G239900 chr6B 94.030 134 8 0 2261 2394 214085918 214086051 1.220000e-48 204.0
39 TraesCS3D01G239900 chr6B 92.929 99 7 0 2263 2361 687365217 687365315 7.480000e-31 145.0
40 TraesCS3D01G239900 chr6A 94.030 134 8 0 2261 2394 149859972 149859839 1.220000e-48 204.0
41 TraesCS3D01G239900 chr6D 95.098 102 5 0 2263 2364 436923296 436923195 7.430000e-36 161.0
42 TraesCS3D01G239900 chr1A 79.670 182 29 5 195 371 566631345 566631167 9.750000e-25 124.0
43 TraesCS3D01G239900 chr4B 87.500 104 12 1 262 365 457879315 457879417 4.530000e-23 119.0
44 TraesCS3D01G239900 chr5D 82.677 127 20 2 2268 2393 272379129 272379004 7.590000e-21 111.0
45 TraesCS3D01G239900 chr5B 93.333 75 5 0 2287 2361 636344682 636344756 7.590000e-21 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G239900 chr3D 332325421 332328014 2593 True 4791.000000 4791 100.000000 1 2594 1 chr3D.!!$R1 2593
1 TraesCS3D01G239900 chr3D 332168995 332169727 732 True 418.000000 684 90.700000 1707 2591 2 chr3D.!!$R2 884
2 TraesCS3D01G239900 chr3D 332236591 332237370 779 True 311.000000 451 90.099333 1707 2591 3 chr3D.!!$R3 884
3 TraesCS3D01G239900 chr3B 431515731 431517930 2199 True 1153.000000 2702 95.247000 372 2591 3 chr3B.!!$R4 2219
4 TraesCS3D01G239900 chr3B 431259109 431259893 784 True 321.333333 488 90.786333 1707 2591 3 chr3B.!!$R3 884
5 TraesCS3D01G239900 chr3A 449655465 449658829 3364 True 806.250000 2082 94.137750 389 2594 4 chr3A.!!$R2 2205
6 TraesCS3D01G239900 chr3A 449513292 449514077 785 True 312.666667 455 90.573000 1707 2591 3 chr3A.!!$R1 884
7 TraesCS3D01G239900 chr5A 4080757 4081376 619 False 473.000000 473 80.899000 996 1601 1 chr5A.!!$F1 605
8 TraesCS3D01G239900 chr4A 17887880 17888493 613 False 473.000000 473 81.037000 1001 1601 1 chr4A.!!$F1 600
9 TraesCS3D01G239900 chr7B 372008150 372008749 599 False 460.000000 460 80.833000 1001 1588 1 chr7B.!!$F1 587
10 TraesCS3D01G239900 chr2A 764913447 764914054 607 False 451.000000 451 80.492000 994 1588 1 chr2A.!!$F1 594
11 TraesCS3D01G239900 chr2B 798702171 798702764 593 True 438.000000 438 80.435000 1007 1588 1 chr2B.!!$R2 581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
105 106 0.035439 TGCAATTCTCCCGGAAGTCC 60.035 55.0 0.73 0.0 37.36 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1612 2964 0.882927 TGCAAGTTTTCGGGGACTCG 60.883 55.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 3.963622 GCAGAAGCAGACGAACATG 57.036 52.632 0.00 0.00 41.58 3.21
38 39 1.432514 GCAGAAGCAGACGAACATGA 58.567 50.000 0.00 0.00 41.58 3.07
39 40 1.800586 GCAGAAGCAGACGAACATGAA 59.199 47.619 0.00 0.00 41.58 2.57
40 41 2.159734 GCAGAAGCAGACGAACATGAAG 60.160 50.000 0.00 0.00 41.58 3.02
41 42 2.072298 AGAAGCAGACGAACATGAAGC 58.928 47.619 0.00 0.00 0.00 3.86
42 43 2.072298 GAAGCAGACGAACATGAAGCT 58.928 47.619 0.00 0.00 0.00 3.74
43 44 1.436600 AGCAGACGAACATGAAGCTG 58.563 50.000 0.00 0.71 0.00 4.24
44 45 1.001293 AGCAGACGAACATGAAGCTGA 59.999 47.619 0.00 0.00 0.00 4.26
45 46 1.392853 GCAGACGAACATGAAGCTGAG 59.607 52.381 0.00 0.00 0.00 3.35
46 47 1.998315 CAGACGAACATGAAGCTGAGG 59.002 52.381 0.00 0.00 0.00 3.86
47 48 1.620819 AGACGAACATGAAGCTGAGGT 59.379 47.619 0.00 0.00 0.00 3.85
48 49 1.728971 GACGAACATGAAGCTGAGGTG 59.271 52.381 0.00 0.00 0.00 4.00
49 50 0.445436 CGAACATGAAGCTGAGGTGC 59.555 55.000 0.00 0.00 0.00 5.01
50 51 1.527034 GAACATGAAGCTGAGGTGCA 58.473 50.000 0.00 0.00 34.99 4.57
51 52 2.089980 GAACATGAAGCTGAGGTGCAT 58.910 47.619 0.00 0.00 34.99 3.96
52 53 1.460504 ACATGAAGCTGAGGTGCATG 58.539 50.000 26.59 26.59 41.44 4.06
53 54 0.100682 CATGAAGCTGAGGTGCATGC 59.899 55.000 18.71 11.82 34.99 4.06
54 55 0.323087 ATGAAGCTGAGGTGCATGCA 60.323 50.000 18.46 18.46 34.99 3.96
55 56 0.958876 TGAAGCTGAGGTGCATGCAG 60.959 55.000 23.41 10.32 34.99 4.41
71 72 4.648626 AGCGCCTGTGCACACCAT 62.649 61.111 17.42 0.00 37.32 3.55
72 73 4.107051 GCGCCTGTGCACACCATC 62.107 66.667 17.42 4.19 37.32 3.51
73 74 3.434319 CGCCTGTGCACACCATCC 61.434 66.667 17.42 1.52 37.32 3.51
74 75 2.282391 GCCTGTGCACACCATCCA 60.282 61.111 17.42 0.00 37.47 3.41
75 76 2.629656 GCCTGTGCACACCATCCAC 61.630 63.158 17.42 0.00 37.47 4.02
76 77 2.327343 CCTGTGCACACCATCCACG 61.327 63.158 17.42 3.21 32.32 4.94
77 78 1.301637 CTGTGCACACCATCCACGA 60.302 57.895 17.42 0.00 32.32 4.35
78 79 1.568612 CTGTGCACACCATCCACGAC 61.569 60.000 17.42 0.00 32.32 4.34
79 80 2.031919 TGCACACCATCCACGACC 59.968 61.111 0.00 0.00 0.00 4.79
80 81 2.031919 GCACACCATCCACGACCA 59.968 61.111 0.00 0.00 0.00 4.02
81 82 2.034879 GCACACCATCCACGACCAG 61.035 63.158 0.00 0.00 0.00 4.00
82 83 2.034879 CACACCATCCACGACCAGC 61.035 63.158 0.00 0.00 0.00 4.85
83 84 2.436646 CACCATCCACGACCAGCC 60.437 66.667 0.00 0.00 0.00 4.85
84 85 4.082523 ACCATCCACGACCAGCCG 62.083 66.667 0.00 0.00 0.00 5.52
85 86 3.770040 CCATCCACGACCAGCCGA 61.770 66.667 0.00 0.00 0.00 5.54
86 87 2.501128 CATCCACGACCAGCCGAT 59.499 61.111 0.00 0.00 0.00 4.18
87 88 1.884464 CATCCACGACCAGCCGATG 60.884 63.158 0.00 0.00 0.00 3.84
88 89 3.740128 ATCCACGACCAGCCGATGC 62.740 63.158 0.00 0.00 37.95 3.91
89 90 4.758251 CCACGACCAGCCGATGCA 62.758 66.667 0.00 0.00 41.13 3.96
90 91 2.741985 CACGACCAGCCGATGCAA 60.742 61.111 0.00 0.00 41.13 4.08
91 92 2.108514 CACGACCAGCCGATGCAAT 61.109 57.895 0.00 0.00 41.13 3.56
92 93 1.377202 ACGACCAGCCGATGCAATT 60.377 52.632 0.00 0.00 41.13 2.32
93 94 1.353103 CGACCAGCCGATGCAATTC 59.647 57.895 0.00 0.00 41.13 2.17
94 95 1.091771 CGACCAGCCGATGCAATTCT 61.092 55.000 0.00 0.00 41.13 2.40
95 96 0.659957 GACCAGCCGATGCAATTCTC 59.340 55.000 0.00 0.00 41.13 2.87
96 97 0.749454 ACCAGCCGATGCAATTCTCC 60.749 55.000 0.00 0.00 41.13 3.71
97 98 1.450531 CCAGCCGATGCAATTCTCCC 61.451 60.000 0.00 0.00 41.13 4.30
98 99 1.524621 AGCCGATGCAATTCTCCCG 60.525 57.895 0.00 0.00 41.13 5.14
99 100 2.546494 GCCGATGCAATTCTCCCGG 61.546 63.158 0.00 0.00 39.88 5.73
100 101 1.146041 CCGATGCAATTCTCCCGGA 59.854 57.895 0.73 0.00 39.31 5.14
101 102 0.463654 CCGATGCAATTCTCCCGGAA 60.464 55.000 0.73 0.00 39.31 4.30
102 103 0.940126 CGATGCAATTCTCCCGGAAG 59.060 55.000 0.73 0.00 37.36 3.46
103 104 1.743772 CGATGCAATTCTCCCGGAAGT 60.744 52.381 0.73 0.00 37.36 3.01
104 105 1.943340 GATGCAATTCTCCCGGAAGTC 59.057 52.381 0.73 0.00 37.36 3.01
105 106 0.035439 TGCAATTCTCCCGGAAGTCC 60.035 55.000 0.73 0.00 37.36 3.85
106 107 0.748367 GCAATTCTCCCGGAAGTCCC 60.748 60.000 0.73 0.00 37.36 4.46
107 108 0.912486 CAATTCTCCCGGAAGTCCCT 59.088 55.000 0.73 0.00 37.36 4.20
108 109 0.912486 AATTCTCCCGGAAGTCCCTG 59.088 55.000 0.73 0.00 37.36 4.45
109 110 0.252742 ATTCTCCCGGAAGTCCCTGT 60.253 55.000 0.73 0.00 37.36 4.00
110 111 0.473117 TTCTCCCGGAAGTCCCTGTT 60.473 55.000 0.73 0.00 0.00 3.16
111 112 0.903454 TCTCCCGGAAGTCCCTGTTC 60.903 60.000 0.73 0.00 0.00 3.18
112 113 2.227089 CTCCCGGAAGTCCCTGTTCG 62.227 65.000 0.73 0.00 0.00 3.95
113 114 2.434359 CCGGAAGTCCCTGTTCGC 60.434 66.667 0.00 0.00 0.00 4.70
114 115 2.434359 CGGAAGTCCCTGTTCGCC 60.434 66.667 0.00 0.00 0.00 5.54
115 116 2.943978 CGGAAGTCCCTGTTCGCCT 61.944 63.158 0.00 0.00 0.00 5.52
116 117 1.079057 GGAAGTCCCTGTTCGCCTC 60.079 63.158 0.00 0.00 0.00 4.70
117 118 1.079057 GAAGTCCCTGTTCGCCTCC 60.079 63.158 0.00 0.00 0.00 4.30
118 119 2.837371 GAAGTCCCTGTTCGCCTCCG 62.837 65.000 0.00 0.00 0.00 4.63
119 120 4.452733 GTCCCTGTTCGCCTCCGG 62.453 72.222 0.00 0.00 34.56 5.14
121 122 3.072468 CCCTGTTCGCCTCCGGTA 61.072 66.667 0.00 0.00 34.56 4.02
122 123 2.183555 CCTGTTCGCCTCCGGTAC 59.816 66.667 0.00 0.00 34.56 3.34
156 157 4.711949 CGGCAGCAGCAAGTCCCT 62.712 66.667 2.65 0.00 44.61 4.20
157 158 2.749441 GGCAGCAGCAAGTCCCTC 60.749 66.667 2.65 0.00 44.61 4.30
158 159 2.350514 GCAGCAGCAAGTCCCTCT 59.649 61.111 0.00 0.00 41.58 3.69
159 160 1.599047 GCAGCAGCAAGTCCCTCTA 59.401 57.895 0.00 0.00 41.58 2.43
160 161 0.742635 GCAGCAGCAAGTCCCTCTAC 60.743 60.000 0.00 0.00 41.58 2.59
161 162 0.610174 CAGCAGCAAGTCCCTCTACA 59.390 55.000 0.00 0.00 0.00 2.74
162 163 1.002430 CAGCAGCAAGTCCCTCTACAA 59.998 52.381 0.00 0.00 0.00 2.41
163 164 1.912043 AGCAGCAAGTCCCTCTACAAT 59.088 47.619 0.00 0.00 0.00 2.71
164 165 3.107601 AGCAGCAAGTCCCTCTACAATA 58.892 45.455 0.00 0.00 0.00 1.90
165 166 3.118592 AGCAGCAAGTCCCTCTACAATAC 60.119 47.826 0.00 0.00 0.00 1.89
166 167 3.118592 GCAGCAAGTCCCTCTACAATACT 60.119 47.826 0.00 0.00 0.00 2.12
167 168 4.099573 GCAGCAAGTCCCTCTACAATACTA 59.900 45.833 0.00 0.00 0.00 1.82
168 169 5.593010 CAGCAAGTCCCTCTACAATACTAC 58.407 45.833 0.00 0.00 0.00 2.73
169 170 5.127194 CAGCAAGTCCCTCTACAATACTACA 59.873 44.000 0.00 0.00 0.00 2.74
170 171 5.720041 AGCAAGTCCCTCTACAATACTACAA 59.280 40.000 0.00 0.00 0.00 2.41
171 172 6.043411 GCAAGTCCCTCTACAATACTACAAG 58.957 44.000 0.00 0.00 0.00 3.16
172 173 6.127423 GCAAGTCCCTCTACAATACTACAAGA 60.127 42.308 0.00 0.00 0.00 3.02
173 174 7.484975 CAAGTCCCTCTACAATACTACAAGAG 58.515 42.308 0.00 0.00 34.71 2.85
174 175 6.733509 AGTCCCTCTACAATACTACAAGAGT 58.266 40.000 0.00 0.00 42.69 3.24
175 176 7.870027 AGTCCCTCTACAATACTACAAGAGTA 58.130 38.462 0.00 0.00 44.87 2.59
176 177 7.774625 AGTCCCTCTACAATACTACAAGAGTAC 59.225 40.741 0.00 0.00 43.56 2.73
177 178 6.765036 TCCCTCTACAATACTACAAGAGTACG 59.235 42.308 0.00 0.00 43.56 3.67
178 179 6.765036 CCCTCTACAATACTACAAGAGTACGA 59.235 42.308 0.00 0.00 43.56 3.43
179 180 7.041916 CCCTCTACAATACTACAAGAGTACGAG 60.042 44.444 0.00 0.00 43.56 4.18
180 181 7.710044 CCTCTACAATACTACAAGAGTACGAGA 59.290 40.741 0.00 0.00 43.56 4.04
181 182 8.417780 TCTACAATACTACAAGAGTACGAGAC 57.582 38.462 0.00 0.00 43.56 3.36
182 183 8.256605 TCTACAATACTACAAGAGTACGAGACT 58.743 37.037 0.00 0.00 43.56 3.24
183 184 9.526713 CTACAATACTACAAGAGTACGAGACTA 57.473 37.037 0.00 0.00 43.56 2.59
184 185 8.195617 ACAATACTACAAGAGTACGAGACTAC 57.804 38.462 0.00 0.00 43.56 2.73
185 186 7.821359 ACAATACTACAAGAGTACGAGACTACA 59.179 37.037 0.00 0.00 43.56 2.74
186 187 8.663025 CAATACTACAAGAGTACGAGACTACAA 58.337 37.037 0.00 0.00 43.56 2.41
187 188 6.479095 ACTACAAGAGTACGAGACTACAAC 57.521 41.667 0.00 0.00 39.06 3.32
188 189 4.401525 ACAAGAGTACGAGACTACAACG 57.598 45.455 0.00 0.00 39.06 4.10
189 190 3.812053 ACAAGAGTACGAGACTACAACGT 59.188 43.478 0.00 0.00 39.06 3.99
190 191 4.274459 ACAAGAGTACGAGACTACAACGTT 59.726 41.667 0.00 0.00 39.06 3.99
191 192 4.401525 AGAGTACGAGACTACAACGTTG 57.598 45.455 26.20 26.20 39.06 4.10
192 193 4.060900 AGAGTACGAGACTACAACGTTGA 58.939 43.478 33.66 16.33 39.06 3.18
193 194 4.084118 AGAGTACGAGACTACAACGTTGAC 60.084 45.833 33.66 17.54 39.06 3.18
194 195 3.812053 AGTACGAGACTACAACGTTGACT 59.188 43.478 33.66 23.45 40.61 3.41
195 196 3.705043 ACGAGACTACAACGTTGACTT 57.295 42.857 33.66 16.51 36.91 3.01
196 197 3.369385 ACGAGACTACAACGTTGACTTG 58.631 45.455 33.66 26.09 36.91 3.16
197 198 3.065786 ACGAGACTACAACGTTGACTTGA 59.934 43.478 33.66 12.27 36.91 3.02
198 199 4.227538 CGAGACTACAACGTTGACTTGAT 58.772 43.478 33.66 13.35 0.00 2.57
199 200 4.321217 CGAGACTACAACGTTGACTTGATC 59.679 45.833 33.66 20.36 0.00 2.92
200 201 4.557205 AGACTACAACGTTGACTTGATCC 58.443 43.478 33.66 13.46 0.00 3.36
201 202 4.038763 AGACTACAACGTTGACTTGATCCA 59.961 41.667 33.66 6.70 0.00 3.41
202 203 4.894784 ACTACAACGTTGACTTGATCCAT 58.105 39.130 33.66 10.40 0.00 3.41
203 204 4.929808 ACTACAACGTTGACTTGATCCATC 59.070 41.667 33.66 0.00 0.00 3.51
204 205 3.074412 ACAACGTTGACTTGATCCATCC 58.926 45.455 33.66 0.00 0.00 3.51
205 206 3.073678 CAACGTTGACTTGATCCATCCA 58.926 45.455 23.90 0.00 0.00 3.41
206 207 2.699954 ACGTTGACTTGATCCATCCAC 58.300 47.619 0.00 0.00 0.00 4.02
207 208 1.660607 CGTTGACTTGATCCATCCACG 59.339 52.381 0.00 0.00 0.00 4.94
208 209 2.699954 GTTGACTTGATCCATCCACGT 58.300 47.619 0.00 0.00 0.00 4.49
209 210 3.074412 GTTGACTTGATCCATCCACGTT 58.926 45.455 0.00 0.00 0.00 3.99
210 211 2.698803 TGACTTGATCCATCCACGTTG 58.301 47.619 0.00 0.00 0.00 4.10
211 212 2.038426 TGACTTGATCCATCCACGTTGT 59.962 45.455 0.00 0.00 0.00 3.32
212 213 2.416547 GACTTGATCCATCCACGTTGTG 59.583 50.000 0.00 0.00 0.00 3.33
213 214 2.038426 ACTTGATCCATCCACGTTGTGA 59.962 45.455 0.00 0.00 35.23 3.58
214 215 2.385013 TGATCCATCCACGTTGTGAG 57.615 50.000 0.00 0.00 35.23 3.51
215 216 1.899142 TGATCCATCCACGTTGTGAGA 59.101 47.619 0.00 0.00 35.23 3.27
216 217 2.501316 TGATCCATCCACGTTGTGAGAT 59.499 45.455 0.00 0.00 35.23 2.75
217 218 3.055167 TGATCCATCCACGTTGTGAGATT 60.055 43.478 0.00 0.00 35.23 2.40
218 219 2.972625 TCCATCCACGTTGTGAGATTC 58.027 47.619 0.00 0.00 35.23 2.52
219 220 2.009774 CCATCCACGTTGTGAGATTCC 58.990 52.381 0.00 0.00 35.23 3.01
220 221 2.615240 CCATCCACGTTGTGAGATTCCA 60.615 50.000 0.00 0.00 35.23 3.53
221 222 2.920724 TCCACGTTGTGAGATTCCAA 57.079 45.000 0.00 0.00 35.23 3.53
222 223 2.766313 TCCACGTTGTGAGATTCCAAG 58.234 47.619 0.00 0.00 35.23 3.61
223 224 1.197721 CCACGTTGTGAGATTCCAAGC 59.802 52.381 0.00 0.00 35.23 4.01
224 225 1.136252 CACGTTGTGAGATTCCAAGCG 60.136 52.381 0.00 0.00 35.23 4.68
225 226 1.270094 ACGTTGTGAGATTCCAAGCGA 60.270 47.619 0.00 0.00 0.00 4.93
226 227 1.391485 CGTTGTGAGATTCCAAGCGAG 59.609 52.381 0.00 0.00 0.00 5.03
227 228 2.688507 GTTGTGAGATTCCAAGCGAGA 58.311 47.619 0.00 0.00 0.00 4.04
228 229 3.067106 GTTGTGAGATTCCAAGCGAGAA 58.933 45.455 0.00 0.00 0.00 2.87
229 230 2.688507 TGTGAGATTCCAAGCGAGAAC 58.311 47.619 0.00 0.00 0.00 3.01
230 231 2.300152 TGTGAGATTCCAAGCGAGAACT 59.700 45.455 0.00 0.00 0.00 3.01
231 232 3.509967 TGTGAGATTCCAAGCGAGAACTA 59.490 43.478 0.00 0.00 0.00 2.24
232 233 4.109050 GTGAGATTCCAAGCGAGAACTAG 58.891 47.826 0.00 0.00 0.00 2.57
233 234 3.131223 TGAGATTCCAAGCGAGAACTAGG 59.869 47.826 0.00 0.00 0.00 3.02
234 235 2.159028 AGATTCCAAGCGAGAACTAGGC 60.159 50.000 0.00 0.00 0.00 3.93
235 236 0.108804 TTCCAAGCGAGAACTAGGCG 60.109 55.000 0.00 0.00 0.00 5.52
239 240 2.886124 GCGAGAACTAGGCGCCAC 60.886 66.667 31.54 13.93 44.55 5.01
240 241 2.885861 CGAGAACTAGGCGCCACT 59.114 61.111 31.54 18.52 0.00 4.00
241 242 1.517257 CGAGAACTAGGCGCCACTG 60.517 63.158 31.54 19.90 0.00 3.66
242 243 1.592223 GAGAACTAGGCGCCACTGT 59.408 57.895 31.54 20.61 0.00 3.55
243 244 0.737715 GAGAACTAGGCGCCACTGTG 60.738 60.000 31.54 15.37 0.00 3.66
244 245 1.004918 GAACTAGGCGCCACTGTGT 60.005 57.895 31.54 16.05 0.00 3.72
245 246 0.245539 GAACTAGGCGCCACTGTGTA 59.754 55.000 31.54 10.17 0.00 2.90
246 247 0.682852 AACTAGGCGCCACTGTGTAA 59.317 50.000 31.54 1.85 0.00 2.41
247 248 0.037605 ACTAGGCGCCACTGTGTAAC 60.038 55.000 31.54 0.00 37.35 2.50
248 249 0.739813 CTAGGCGCCACTGTGTAACC 60.740 60.000 31.54 4.71 34.36 2.85
249 250 1.473497 TAGGCGCCACTGTGTAACCA 61.473 55.000 31.54 0.00 34.36 3.67
250 251 2.613506 GGCGCCACTGTGTAACCAC 61.614 63.158 24.80 0.00 42.19 4.16
259 260 2.922779 GTGTAACCACAAGTCCCGG 58.077 57.895 0.00 0.00 41.44 5.73
260 261 1.071814 TGTAACCACAAGTCCCGGC 59.928 57.895 0.00 0.00 0.00 6.13
261 262 1.373812 GTAACCACAAGTCCCGGCT 59.626 57.895 0.00 0.00 0.00 5.52
262 263 0.609662 GTAACCACAAGTCCCGGCTA 59.390 55.000 0.00 0.00 0.00 3.93
263 264 1.208776 GTAACCACAAGTCCCGGCTAT 59.791 52.381 0.00 0.00 0.00 2.97
264 265 1.575419 AACCACAAGTCCCGGCTATA 58.425 50.000 0.00 0.00 0.00 1.31
265 266 1.802553 ACCACAAGTCCCGGCTATAT 58.197 50.000 0.00 0.00 0.00 0.86
266 267 2.124411 ACCACAAGTCCCGGCTATATT 58.876 47.619 0.00 0.00 0.00 1.28
267 268 2.508300 ACCACAAGTCCCGGCTATATTT 59.492 45.455 0.00 0.00 0.00 1.40
268 269 3.053917 ACCACAAGTCCCGGCTATATTTT 60.054 43.478 0.00 0.00 0.00 1.82
269 270 3.951680 CCACAAGTCCCGGCTATATTTTT 59.048 43.478 0.00 0.00 0.00 1.94
270 271 4.202010 CCACAAGTCCCGGCTATATTTTTG 60.202 45.833 0.00 0.00 0.00 2.44
271 272 4.638421 CACAAGTCCCGGCTATATTTTTGA 59.362 41.667 0.00 0.00 0.00 2.69
272 273 5.299279 CACAAGTCCCGGCTATATTTTTGAT 59.701 40.000 0.00 0.00 0.00 2.57
273 274 5.531287 ACAAGTCCCGGCTATATTTTTGATC 59.469 40.000 0.00 0.00 0.00 2.92
274 275 5.568620 AGTCCCGGCTATATTTTTGATCT 57.431 39.130 0.00 0.00 0.00 2.75
275 276 5.308825 AGTCCCGGCTATATTTTTGATCTG 58.691 41.667 0.00 0.00 0.00 2.90
276 277 4.455877 GTCCCGGCTATATTTTTGATCTGG 59.544 45.833 0.00 0.00 0.00 3.86
277 278 3.191371 CCCGGCTATATTTTTGATCTGGC 59.809 47.826 0.00 0.00 0.00 4.85
278 279 4.074970 CCGGCTATATTTTTGATCTGGCT 58.925 43.478 0.00 0.00 0.00 4.75
279 280 4.154918 CCGGCTATATTTTTGATCTGGCTC 59.845 45.833 0.00 0.00 0.00 4.70
280 281 4.756642 CGGCTATATTTTTGATCTGGCTCA 59.243 41.667 0.00 0.00 0.00 4.26
281 282 5.239306 CGGCTATATTTTTGATCTGGCTCAA 59.761 40.000 0.00 0.00 33.42 3.02
282 283 6.072286 CGGCTATATTTTTGATCTGGCTCAAT 60.072 38.462 0.00 0.00 35.20 2.57
283 284 7.119699 CGGCTATATTTTTGATCTGGCTCAATA 59.880 37.037 0.00 0.00 35.20 1.90
284 285 8.964772 GGCTATATTTTTGATCTGGCTCAATAT 58.035 33.333 0.00 0.00 35.20 1.28
289 290 6.455360 TTTTGATCTGGCTCAATATTGTCC 57.545 37.500 14.97 16.21 35.20 4.02
290 291 3.732212 TGATCTGGCTCAATATTGTCCG 58.268 45.455 14.97 12.53 0.00 4.79
291 292 3.134623 TGATCTGGCTCAATATTGTCCGT 59.865 43.478 14.97 7.98 0.00 4.69
292 293 3.627395 TCTGGCTCAATATTGTCCGTT 57.373 42.857 14.97 0.00 0.00 4.44
293 294 3.270027 TCTGGCTCAATATTGTCCGTTG 58.730 45.455 14.97 11.03 0.00 4.10
294 295 2.355756 CTGGCTCAATATTGTCCGTTGG 59.644 50.000 14.97 6.37 0.00 3.77
295 296 2.026729 TGGCTCAATATTGTCCGTTGGA 60.027 45.455 14.97 0.24 0.00 3.53
296 297 3.214328 GGCTCAATATTGTCCGTTGGAT 58.786 45.455 14.97 0.00 32.73 3.41
297 298 3.251004 GGCTCAATATTGTCCGTTGGATC 59.749 47.826 14.97 0.00 32.73 3.36
298 299 4.130118 GCTCAATATTGTCCGTTGGATCT 58.870 43.478 14.97 0.00 32.73 2.75
299 300 4.576463 GCTCAATATTGTCCGTTGGATCTT 59.424 41.667 14.97 0.00 32.73 2.40
300 301 5.504665 GCTCAATATTGTCCGTTGGATCTTG 60.505 44.000 14.97 0.00 32.73 3.02
301 302 5.496556 TCAATATTGTCCGTTGGATCTTGT 58.503 37.500 14.97 0.00 32.73 3.16
302 303 5.943416 TCAATATTGTCCGTTGGATCTTGTT 59.057 36.000 14.97 0.00 32.73 2.83
303 304 6.432783 TCAATATTGTCCGTTGGATCTTGTTT 59.567 34.615 14.97 0.00 32.73 2.83
304 305 3.980646 TTGTCCGTTGGATCTTGTTTG 57.019 42.857 0.00 0.00 32.73 2.93
305 306 2.226330 TGTCCGTTGGATCTTGTTTGG 58.774 47.619 0.00 0.00 32.73 3.28
306 307 1.539827 GTCCGTTGGATCTTGTTTGGG 59.460 52.381 0.00 0.00 32.73 4.12
307 308 1.144093 TCCGTTGGATCTTGTTTGGGT 59.856 47.619 0.00 0.00 0.00 4.51
308 309 1.269448 CCGTTGGATCTTGTTTGGGTG 59.731 52.381 0.00 0.00 0.00 4.61
309 310 1.269448 CGTTGGATCTTGTTTGGGTGG 59.731 52.381 0.00 0.00 0.00 4.61
310 311 1.000843 GTTGGATCTTGTTTGGGTGGC 59.999 52.381 0.00 0.00 0.00 5.01
311 312 0.482446 TGGATCTTGTTTGGGTGGCT 59.518 50.000 0.00 0.00 0.00 4.75
312 313 1.707989 TGGATCTTGTTTGGGTGGCTA 59.292 47.619 0.00 0.00 0.00 3.93
313 314 2.109128 TGGATCTTGTTTGGGTGGCTAA 59.891 45.455 0.00 0.00 0.00 3.09
314 315 3.245586 TGGATCTTGTTTGGGTGGCTAAT 60.246 43.478 0.00 0.00 0.00 1.73
315 316 4.017958 TGGATCTTGTTTGGGTGGCTAATA 60.018 41.667 0.00 0.00 0.00 0.98
316 317 5.140454 GGATCTTGTTTGGGTGGCTAATAT 58.860 41.667 0.00 0.00 0.00 1.28
317 318 6.126332 TGGATCTTGTTTGGGTGGCTAATATA 60.126 38.462 0.00 0.00 0.00 0.86
318 319 6.431234 GGATCTTGTTTGGGTGGCTAATATAG 59.569 42.308 0.00 0.00 0.00 1.31
319 320 5.690865 TCTTGTTTGGGTGGCTAATATAGG 58.309 41.667 0.00 0.00 0.00 2.57
320 321 4.447138 TGTTTGGGTGGCTAATATAGGG 57.553 45.455 0.00 0.00 0.00 3.53
321 322 3.139397 TGTTTGGGTGGCTAATATAGGGG 59.861 47.826 0.00 0.00 0.00 4.79
322 323 1.368374 TGGGTGGCTAATATAGGGGC 58.632 55.000 0.00 0.00 0.00 5.80
323 324 0.252197 GGGTGGCTAATATAGGGGCG 59.748 60.000 0.00 0.00 0.00 6.13
324 325 0.392595 GGTGGCTAATATAGGGGCGC 60.393 60.000 0.00 0.00 35.72 6.53
325 326 0.323629 GTGGCTAATATAGGGGCGCA 59.676 55.000 10.83 0.00 36.33 6.09
326 327 1.060729 TGGCTAATATAGGGGCGCAA 58.939 50.000 10.83 0.00 0.00 4.85
327 328 1.003118 TGGCTAATATAGGGGCGCAAG 59.997 52.381 10.83 0.00 43.44 4.01
328 329 1.679032 GGCTAATATAGGGGCGCAAGG 60.679 57.143 10.83 0.00 38.28 3.61
329 330 1.003233 GCTAATATAGGGGCGCAAGGT 59.997 52.381 10.83 0.00 38.28 3.50
330 331 2.235402 GCTAATATAGGGGCGCAAGGTA 59.765 50.000 10.83 0.00 38.28 3.08
331 332 2.853235 AATATAGGGGCGCAAGGTAC 57.147 50.000 10.83 0.00 38.28 3.34
332 333 1.724545 ATATAGGGGCGCAAGGTACA 58.275 50.000 10.83 0.00 38.28 2.90
333 334 1.045407 TATAGGGGCGCAAGGTACAG 58.955 55.000 10.83 0.00 38.28 2.74
334 335 2.325393 ATAGGGGCGCAAGGTACAGC 62.325 60.000 10.83 0.00 38.28 4.40
339 340 3.156334 CGCAAGGTACAGCGTGAC 58.844 61.111 15.58 0.00 46.77 3.67
340 341 1.372997 CGCAAGGTACAGCGTGACT 60.373 57.895 15.58 0.00 46.77 3.41
341 342 0.944311 CGCAAGGTACAGCGTGACTT 60.944 55.000 15.58 0.00 46.77 3.01
342 343 0.512952 GCAAGGTACAGCGTGACTTG 59.487 55.000 15.58 15.58 40.97 3.16
343 344 0.512952 CAAGGTACAGCGTGACTTGC 59.487 55.000 0.00 0.00 33.12 4.01
344 345 0.105964 AAGGTACAGCGTGACTTGCA 59.894 50.000 0.00 0.00 33.85 4.08
345 346 0.105964 AGGTACAGCGTGACTTGCAA 59.894 50.000 0.00 0.00 33.85 4.08
346 347 0.512952 GGTACAGCGTGACTTGCAAG 59.487 55.000 24.84 24.84 33.85 4.01
347 348 1.497991 GTACAGCGTGACTTGCAAGA 58.502 50.000 32.50 8.75 33.85 3.02
348 349 1.457303 GTACAGCGTGACTTGCAAGAG 59.543 52.381 32.50 19.48 33.85 2.85
349 350 0.882042 ACAGCGTGACTTGCAAGAGG 60.882 55.000 32.50 17.12 33.85 3.69
350 351 1.963338 AGCGTGACTTGCAAGAGGC 60.963 57.895 32.50 25.07 45.13 4.70
359 360 4.809070 GCAAGAGGCAAGTCACCT 57.191 55.556 0.00 0.00 43.97 4.00
360 361 2.251600 GCAAGAGGCAAGTCACCTG 58.748 57.895 0.00 0.00 43.97 4.00
361 362 0.250467 GCAAGAGGCAAGTCACCTGA 60.250 55.000 0.00 0.00 43.97 3.86
362 363 1.612726 GCAAGAGGCAAGTCACCTGAT 60.613 52.381 0.00 0.00 43.97 2.90
363 364 2.354259 CAAGAGGCAAGTCACCTGATC 58.646 52.381 0.00 0.00 37.77 2.92
364 365 1.949799 AGAGGCAAGTCACCTGATCT 58.050 50.000 0.00 0.00 37.77 2.75
365 366 1.830477 AGAGGCAAGTCACCTGATCTC 59.170 52.381 0.00 0.00 37.77 2.75
366 367 0.534412 AGGCAAGTCACCTGATCTCG 59.466 55.000 0.00 0.00 35.72 4.04
367 368 0.460987 GGCAAGTCACCTGATCTCGG 60.461 60.000 0.00 0.00 0.00 4.63
368 369 0.247736 GCAAGTCACCTGATCTCGGT 59.752 55.000 1.94 1.94 34.38 4.69
369 370 1.737363 GCAAGTCACCTGATCTCGGTC 60.737 57.143 4.54 0.00 30.82 4.79
370 371 1.134965 CAAGTCACCTGATCTCGGTCC 60.135 57.143 4.54 0.29 30.82 4.46
421 422 6.547141 CAGGATCATCAGACTACTCTCTCTTT 59.453 42.308 0.00 0.00 0.00 2.52
434 435 9.425577 ACTACTCTCTCTTTGTAATTAACTTGC 57.574 33.333 0.00 0.00 0.00 4.01
465 466 1.409064 TCTATGTCTAGTTGGCAGCCG 59.591 52.381 7.03 0.00 31.78 5.52
481 482 1.448922 GCCGTGGCAACCTGTACAAA 61.449 55.000 5.89 0.00 41.49 2.83
482 483 0.591170 CCGTGGCAACCTGTACAAAG 59.409 55.000 0.00 0.00 0.00 2.77
483 484 1.588674 CGTGGCAACCTGTACAAAGA 58.411 50.000 0.00 0.00 0.00 2.52
484 485 2.151202 CGTGGCAACCTGTACAAAGAT 58.849 47.619 0.00 0.00 0.00 2.40
700 735 4.790765 ACCAGCCTTTGAAAAATAGCTC 57.209 40.909 0.00 0.00 0.00 4.09
702 737 4.835056 ACCAGCCTTTGAAAAATAGCTCTT 59.165 37.500 0.00 0.00 0.00 2.85
721 789 2.510906 CCTGCCTCCGGGGTTATG 59.489 66.667 0.00 0.00 37.43 1.90
722 790 2.510906 CTGCCTCCGGGGTTATGG 59.489 66.667 0.00 0.00 37.43 2.74
723 791 3.093835 TGCCTCCGGGGTTATGGG 61.094 66.667 0.00 0.00 37.43 4.00
724 792 4.581093 GCCTCCGGGGTTATGGGC 62.581 72.222 0.00 0.27 37.43 5.36
813 884 5.045140 TGGAATTTCCAACTAGTAAGAGGGG 60.045 44.000 15.83 0.00 45.00 4.79
1512 2864 2.409651 GACGCCTACTGCCTCTCG 59.590 66.667 0.00 0.00 36.24 4.04
1612 2964 1.064654 GAGTTGATGATTTCTGCGGCC 59.935 52.381 0.00 0.00 0.00 6.13
1619 2971 3.682292 ATTTCTGCGGCCGAGTCCC 62.682 63.158 33.48 11.67 0.00 4.46
1742 3097 5.123979 GGAAGAATTAGACATTGGTGGTGAC 59.876 44.000 0.00 0.00 0.00 3.67
1743 3098 4.589908 AGAATTAGACATTGGTGGTGACC 58.410 43.478 0.00 0.00 43.48 4.02
1791 3146 2.746277 CGCCTACAACTGGGTGCC 60.746 66.667 0.00 0.00 0.00 5.01
1792 3147 2.434331 GCCTACAACTGGGTGCCA 59.566 61.111 0.00 0.00 0.00 4.92
1793 3148 1.000896 GCCTACAACTGGGTGCCAT 60.001 57.895 0.00 0.00 30.82 4.40
1794 3149 1.315257 GCCTACAACTGGGTGCCATG 61.315 60.000 0.00 0.00 30.82 3.66
1795 3150 0.327924 CCTACAACTGGGTGCCATGA 59.672 55.000 0.00 0.00 30.82 3.07
1796 3151 1.679944 CCTACAACTGGGTGCCATGAG 60.680 57.143 0.00 0.00 30.82 2.90
1797 3152 0.322456 TACAACTGGGTGCCATGAGC 60.322 55.000 0.00 0.00 44.14 4.26
1828 3183 0.958822 GACCCTTTTGTGCCAATCGT 59.041 50.000 0.00 0.00 0.00 3.73
1875 3231 7.489113 GTCCCATTATGCATTTTTAGTGAACTG 59.511 37.037 3.54 0.00 0.00 3.16
1881 3237 9.891828 TTATGCATTTTTAGTGAACTGTAACTG 57.108 29.630 3.54 0.00 0.00 3.16
1934 3290 4.665833 TTCAGTTATCACCGATCGGATT 57.334 40.909 39.55 23.87 38.96 3.01
2274 3700 1.743995 CTGTTTAGGCCCCGTTCGG 60.744 63.158 0.00 4.08 0.00 4.30
2291 3717 0.882474 CGGGAATCTACCGCTCCTAG 59.118 60.000 0.00 0.00 45.34 3.02
2350 3776 2.017559 ATTACAGCTCCGTCCGCTCC 62.018 60.000 0.00 0.00 35.07 4.70
2449 3875 7.054124 CCCACTTATACCACATTGTCAGTTAT 58.946 38.462 0.00 0.00 0.00 1.89
2451 3877 9.778741 CCACTTATACCACATTGTCAGTTATAT 57.221 33.333 0.00 0.00 0.00 0.86
2583 4010 4.751600 CGCTAGCATGATGATTCCTTGTAA 59.248 41.667 16.45 0.00 0.00 2.41
2591 4018 8.814235 GCATGATGATTCCTTGTAATGAAAAAG 58.186 33.333 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.432514 TCATGTTCGTCTGCTTCTGC 58.567 50.000 0.00 0.00 40.20 4.26
20 21 2.159734 GCTTCATGTTCGTCTGCTTCTG 60.160 50.000 0.00 0.00 0.00 3.02
21 22 2.072298 GCTTCATGTTCGTCTGCTTCT 58.928 47.619 0.00 0.00 0.00 2.85
22 23 2.072298 AGCTTCATGTTCGTCTGCTTC 58.928 47.619 0.00 0.00 0.00 3.86
23 24 1.802960 CAGCTTCATGTTCGTCTGCTT 59.197 47.619 0.00 0.00 0.00 3.91
24 25 1.001293 TCAGCTTCATGTTCGTCTGCT 59.999 47.619 0.00 0.00 0.00 4.24
25 26 1.392853 CTCAGCTTCATGTTCGTCTGC 59.607 52.381 0.00 0.00 0.00 4.26
26 27 1.998315 CCTCAGCTTCATGTTCGTCTG 59.002 52.381 0.00 0.00 0.00 3.51
27 28 1.620819 ACCTCAGCTTCATGTTCGTCT 59.379 47.619 0.00 0.00 0.00 4.18
28 29 1.728971 CACCTCAGCTTCATGTTCGTC 59.271 52.381 0.00 0.00 0.00 4.20
29 30 1.800805 CACCTCAGCTTCATGTTCGT 58.199 50.000 0.00 0.00 0.00 3.85
30 31 0.445436 GCACCTCAGCTTCATGTTCG 59.555 55.000 0.00 0.00 0.00 3.95
31 32 1.527034 TGCACCTCAGCTTCATGTTC 58.473 50.000 0.00 0.00 34.99 3.18
32 33 1.816835 CATGCACCTCAGCTTCATGTT 59.183 47.619 0.00 0.00 34.99 2.71
33 34 1.460504 CATGCACCTCAGCTTCATGT 58.539 50.000 0.00 0.00 34.99 3.21
34 35 0.100682 GCATGCACCTCAGCTTCATG 59.899 55.000 14.21 0.00 37.98 3.07
35 36 0.323087 TGCATGCACCTCAGCTTCAT 60.323 50.000 18.46 0.00 34.99 2.57
36 37 0.958876 CTGCATGCACCTCAGCTTCA 60.959 55.000 18.46 0.00 34.99 3.02
37 38 1.801332 CTGCATGCACCTCAGCTTC 59.199 57.895 18.46 0.00 34.99 3.86
38 39 2.341101 GCTGCATGCACCTCAGCTT 61.341 57.895 18.46 0.00 46.93 3.74
39 40 2.750637 GCTGCATGCACCTCAGCT 60.751 61.111 18.46 0.00 46.93 4.24
40 41 4.175489 CGCTGCATGCACCTCAGC 62.175 66.667 18.46 17.31 46.98 4.26
41 42 4.175489 GCGCTGCATGCACCTCAG 62.175 66.667 18.46 8.01 43.06 3.35
46 47 4.771356 CACAGGCGCTGCATGCAC 62.771 66.667 18.46 12.94 44.57 4.57
49 50 4.771356 GTGCACAGGCGCTGCATG 62.771 66.667 23.27 12.43 46.08 4.06
56 57 3.434319 GGATGGTGTGCACAGGCG 61.434 66.667 22.40 0.00 45.35 5.52
57 58 2.282391 TGGATGGTGTGCACAGGC 60.282 61.111 22.40 9.60 41.68 4.85
61 62 2.325082 GGTCGTGGATGGTGTGCAC 61.325 63.158 10.75 10.75 44.83 4.57
62 63 2.031919 GGTCGTGGATGGTGTGCA 59.968 61.111 0.00 0.00 0.00 4.57
63 64 2.031919 TGGTCGTGGATGGTGTGC 59.968 61.111 0.00 0.00 0.00 4.57
64 65 2.034879 GCTGGTCGTGGATGGTGTG 61.035 63.158 0.00 0.00 0.00 3.82
65 66 2.347490 GCTGGTCGTGGATGGTGT 59.653 61.111 0.00 0.00 0.00 4.16
66 67 2.436646 GGCTGGTCGTGGATGGTG 60.437 66.667 0.00 0.00 0.00 4.17
67 68 4.082523 CGGCTGGTCGTGGATGGT 62.083 66.667 0.00 0.00 0.00 3.55
68 69 3.094062 ATCGGCTGGTCGTGGATGG 62.094 63.158 0.00 0.00 0.00 3.51
69 70 1.884464 CATCGGCTGGTCGTGGATG 60.884 63.158 0.00 0.00 0.00 3.51
70 71 2.501128 CATCGGCTGGTCGTGGAT 59.499 61.111 0.00 0.00 0.00 3.41
71 72 4.451150 GCATCGGCTGGTCGTGGA 62.451 66.667 0.00 0.00 36.96 4.02
72 73 4.758251 TGCATCGGCTGGTCGTGG 62.758 66.667 0.00 0.00 41.91 4.94
73 74 1.647545 AATTGCATCGGCTGGTCGTG 61.648 55.000 0.00 0.00 41.91 4.35
74 75 1.369091 GAATTGCATCGGCTGGTCGT 61.369 55.000 0.00 0.00 41.91 4.34
75 76 1.091771 AGAATTGCATCGGCTGGTCG 61.092 55.000 0.00 0.00 41.91 4.79
76 77 0.659957 GAGAATTGCATCGGCTGGTC 59.340 55.000 0.00 0.00 41.91 4.02
77 78 0.749454 GGAGAATTGCATCGGCTGGT 60.749 55.000 0.00 0.00 41.91 4.00
78 79 1.450531 GGGAGAATTGCATCGGCTGG 61.451 60.000 0.00 0.00 41.91 4.85
79 80 1.779025 CGGGAGAATTGCATCGGCTG 61.779 60.000 0.00 0.00 41.91 4.85
80 81 1.524621 CGGGAGAATTGCATCGGCT 60.525 57.895 0.00 0.00 41.91 5.52
81 82 2.546494 CCGGGAGAATTGCATCGGC 61.546 63.158 0.00 0.00 41.68 5.54
82 83 0.463654 TTCCGGGAGAATTGCATCGG 60.464 55.000 0.00 0.00 38.92 4.18
83 84 0.940126 CTTCCGGGAGAATTGCATCG 59.060 55.000 2.45 0.00 32.82 3.84
84 85 1.943340 GACTTCCGGGAGAATTGCATC 59.057 52.381 19.39 0.00 32.82 3.91
85 86 1.408822 GGACTTCCGGGAGAATTGCAT 60.409 52.381 19.39 0.00 32.82 3.96
86 87 0.035439 GGACTTCCGGGAGAATTGCA 60.035 55.000 19.39 0.00 32.82 4.08
87 88 0.748367 GGGACTTCCGGGAGAATTGC 60.748 60.000 19.39 0.00 36.71 3.56
88 89 0.912486 AGGGACTTCCGGGAGAATTG 59.088 55.000 19.39 0.00 41.52 2.32
89 90 0.912486 CAGGGACTTCCGGGAGAATT 59.088 55.000 19.39 0.00 41.52 2.17
90 91 0.252742 ACAGGGACTTCCGGGAGAAT 60.253 55.000 19.39 0.00 41.52 2.40
91 92 0.473117 AACAGGGACTTCCGGGAGAA 60.473 55.000 19.39 0.00 41.52 2.87
92 93 0.903454 GAACAGGGACTTCCGGGAGA 60.903 60.000 19.39 0.00 41.52 3.71
93 94 1.597461 GAACAGGGACTTCCGGGAG 59.403 63.158 8.71 8.71 41.52 4.30
94 95 2.280552 CGAACAGGGACTTCCGGGA 61.281 63.158 0.00 0.00 41.52 5.14
95 96 2.264794 CGAACAGGGACTTCCGGG 59.735 66.667 0.00 0.00 41.52 5.73
96 97 2.434359 GCGAACAGGGACTTCCGG 60.434 66.667 0.00 0.00 41.52 5.14
97 98 2.434359 GGCGAACAGGGACTTCCG 60.434 66.667 0.00 0.00 41.52 4.30
98 99 1.079057 GAGGCGAACAGGGACTTCC 60.079 63.158 0.00 0.00 34.60 3.46
99 100 1.079057 GGAGGCGAACAGGGACTTC 60.079 63.158 0.00 0.00 34.60 3.01
100 101 2.943978 CGGAGGCGAACAGGGACTT 61.944 63.158 0.00 0.00 34.60 3.01
101 102 3.382832 CGGAGGCGAACAGGGACT 61.383 66.667 0.00 0.00 43.88 3.85
102 103 4.452733 CCGGAGGCGAACAGGGAC 62.453 72.222 0.00 0.00 46.14 4.46
139 140 4.711949 AGGGACTTGCTGCTGCCG 62.712 66.667 13.47 6.76 38.71 5.69
140 141 1.903877 TAGAGGGACTTGCTGCTGCC 61.904 60.000 13.47 0.00 41.55 4.85
141 142 0.742635 GTAGAGGGACTTGCTGCTGC 60.743 60.000 8.89 8.89 41.55 5.25
142 143 0.610174 TGTAGAGGGACTTGCTGCTG 59.390 55.000 0.00 0.00 41.55 4.41
143 144 1.352083 TTGTAGAGGGACTTGCTGCT 58.648 50.000 0.00 0.00 41.55 4.24
144 145 2.409948 ATTGTAGAGGGACTTGCTGC 57.590 50.000 0.00 0.00 41.55 5.25
145 146 4.744795 AGTATTGTAGAGGGACTTGCTG 57.255 45.455 0.00 0.00 41.55 4.41
146 147 5.269991 TGTAGTATTGTAGAGGGACTTGCT 58.730 41.667 0.00 0.00 41.55 3.91
147 148 5.593679 TGTAGTATTGTAGAGGGACTTGC 57.406 43.478 0.00 0.00 41.55 4.01
148 149 7.122948 ACTCTTGTAGTATTGTAGAGGGACTTG 59.877 40.741 0.00 0.00 35.61 3.16
149 150 7.183460 ACTCTTGTAGTATTGTAGAGGGACTT 58.817 38.462 0.00 0.00 35.61 3.01
150 151 6.733509 ACTCTTGTAGTATTGTAGAGGGACT 58.266 40.000 0.00 0.00 38.08 3.85
151 152 7.254727 CGTACTCTTGTAGTATTGTAGAGGGAC 60.255 44.444 0.00 0.00 42.63 4.46
152 153 6.765036 CGTACTCTTGTAGTATTGTAGAGGGA 59.235 42.308 0.00 0.00 42.63 4.20
153 154 6.765036 TCGTACTCTTGTAGTATTGTAGAGGG 59.235 42.308 0.00 0.00 42.63 4.30
154 155 7.710044 TCTCGTACTCTTGTAGTATTGTAGAGG 59.290 40.741 0.00 0.00 42.63 3.69
155 156 8.542132 GTCTCGTACTCTTGTAGTATTGTAGAG 58.458 40.741 0.00 0.00 42.63 2.43
156 157 8.256605 AGTCTCGTACTCTTGTAGTATTGTAGA 58.743 37.037 0.00 0.00 42.63 2.59
157 158 8.422973 AGTCTCGTACTCTTGTAGTATTGTAG 57.577 38.462 0.00 0.00 42.63 2.74
158 159 9.307121 GTAGTCTCGTACTCTTGTAGTATTGTA 57.693 37.037 0.00 0.00 42.63 2.41
159 160 7.821359 TGTAGTCTCGTACTCTTGTAGTATTGT 59.179 37.037 0.00 0.00 42.63 2.71
160 161 8.194433 TGTAGTCTCGTACTCTTGTAGTATTG 57.806 38.462 0.00 0.00 42.63 1.90
161 162 8.663911 GTTGTAGTCTCGTACTCTTGTAGTATT 58.336 37.037 0.00 0.00 42.63 1.89
162 163 7.009999 CGTTGTAGTCTCGTACTCTTGTAGTAT 59.990 40.741 0.00 0.00 42.63 2.12
163 164 6.309009 CGTTGTAGTCTCGTACTCTTGTAGTA 59.691 42.308 0.00 0.00 39.80 1.82
164 165 5.119898 CGTTGTAGTCTCGTACTCTTGTAGT 59.880 44.000 0.00 0.00 39.80 2.73
165 166 5.119898 ACGTTGTAGTCTCGTACTCTTGTAG 59.880 44.000 0.00 0.00 39.80 2.74
166 167 4.991056 ACGTTGTAGTCTCGTACTCTTGTA 59.009 41.667 0.00 0.00 39.80 2.41
167 168 3.812053 ACGTTGTAGTCTCGTACTCTTGT 59.188 43.478 0.00 0.00 39.80 3.16
168 169 4.401525 ACGTTGTAGTCTCGTACTCTTG 57.598 45.455 0.00 0.00 39.80 3.02
169 170 4.512944 TCAACGTTGTAGTCTCGTACTCTT 59.487 41.667 26.47 0.00 39.80 2.85
170 171 4.060900 TCAACGTTGTAGTCTCGTACTCT 58.939 43.478 26.47 0.00 39.80 3.24
171 172 4.084118 AGTCAACGTTGTAGTCTCGTACTC 60.084 45.833 26.47 4.33 39.80 2.59
172 173 3.812053 AGTCAACGTTGTAGTCTCGTACT 59.188 43.478 26.47 16.25 42.62 2.73
173 174 4.139183 AGTCAACGTTGTAGTCTCGTAC 57.861 45.455 26.47 14.33 36.80 3.67
174 175 4.273235 TCAAGTCAACGTTGTAGTCTCGTA 59.727 41.667 26.47 2.24 36.80 3.43
175 176 3.065786 TCAAGTCAACGTTGTAGTCTCGT 59.934 43.478 26.47 8.13 39.49 4.18
176 177 3.624900 TCAAGTCAACGTTGTAGTCTCG 58.375 45.455 26.47 11.37 0.00 4.04
177 178 4.621886 GGATCAAGTCAACGTTGTAGTCTC 59.378 45.833 26.47 16.43 0.00 3.36
178 179 4.038763 TGGATCAAGTCAACGTTGTAGTCT 59.961 41.667 26.47 17.10 0.00 3.24
179 180 4.304110 TGGATCAAGTCAACGTTGTAGTC 58.696 43.478 26.47 16.05 0.00 2.59
180 181 4.330944 TGGATCAAGTCAACGTTGTAGT 57.669 40.909 26.47 13.84 0.00 2.73
181 182 4.330074 GGATGGATCAAGTCAACGTTGTAG 59.670 45.833 26.47 14.96 0.00 2.74
182 183 4.250464 GGATGGATCAAGTCAACGTTGTA 58.750 43.478 26.47 11.71 0.00 2.41
183 184 3.074412 GGATGGATCAAGTCAACGTTGT 58.926 45.455 26.47 7.37 0.00 3.32
184 185 3.073678 TGGATGGATCAAGTCAACGTTG 58.926 45.455 22.35 22.35 0.00 4.10
185 186 3.074412 GTGGATGGATCAAGTCAACGTT 58.926 45.455 0.00 0.00 0.00 3.99
186 187 2.699954 GTGGATGGATCAAGTCAACGT 58.300 47.619 0.00 0.00 0.00 3.99
187 188 1.660607 CGTGGATGGATCAAGTCAACG 59.339 52.381 6.72 6.72 0.00 4.10
188 189 2.699954 ACGTGGATGGATCAAGTCAAC 58.300 47.619 0.00 0.00 0.00 3.18
189 190 3.073678 CAACGTGGATGGATCAAGTCAA 58.926 45.455 0.00 0.00 0.00 3.18
190 191 2.038426 ACAACGTGGATGGATCAAGTCA 59.962 45.455 0.00 0.00 0.00 3.41
191 192 2.416547 CACAACGTGGATGGATCAAGTC 59.583 50.000 0.00 0.00 0.00 3.01
192 193 2.038426 TCACAACGTGGATGGATCAAGT 59.962 45.455 0.00 0.00 33.87 3.16
193 194 2.674852 CTCACAACGTGGATGGATCAAG 59.325 50.000 0.00 0.00 33.87 3.02
194 195 2.301583 TCTCACAACGTGGATGGATCAA 59.698 45.455 0.00 0.00 33.87 2.57
195 196 1.899142 TCTCACAACGTGGATGGATCA 59.101 47.619 0.00 0.00 33.87 2.92
196 197 2.672961 TCTCACAACGTGGATGGATC 57.327 50.000 0.00 0.00 33.87 3.36
197 198 3.535561 GAATCTCACAACGTGGATGGAT 58.464 45.455 0.00 0.00 33.87 3.41
198 199 2.354704 GGAATCTCACAACGTGGATGGA 60.355 50.000 0.00 0.00 33.87 3.41
199 200 2.009774 GGAATCTCACAACGTGGATGG 58.990 52.381 0.00 0.00 33.87 3.51
200 201 2.698803 TGGAATCTCACAACGTGGATG 58.301 47.619 0.00 0.00 33.87 3.51
201 202 3.338249 CTTGGAATCTCACAACGTGGAT 58.662 45.455 0.00 0.00 33.87 3.41
202 203 2.766313 CTTGGAATCTCACAACGTGGA 58.234 47.619 0.00 0.00 33.87 4.02
203 204 1.197721 GCTTGGAATCTCACAACGTGG 59.802 52.381 0.00 0.00 33.87 4.94
204 205 1.136252 CGCTTGGAATCTCACAACGTG 60.136 52.381 0.00 0.00 34.45 4.49
205 206 1.148310 CGCTTGGAATCTCACAACGT 58.852 50.000 0.00 0.00 0.00 3.99
206 207 1.391485 CTCGCTTGGAATCTCACAACG 59.609 52.381 0.00 0.00 0.00 4.10
207 208 2.688507 TCTCGCTTGGAATCTCACAAC 58.311 47.619 0.00 0.00 0.00 3.32
208 209 3.067106 GTTCTCGCTTGGAATCTCACAA 58.933 45.455 0.00 0.00 0.00 3.33
209 210 2.300152 AGTTCTCGCTTGGAATCTCACA 59.700 45.455 0.00 0.00 0.00 3.58
210 211 2.966050 AGTTCTCGCTTGGAATCTCAC 58.034 47.619 0.00 0.00 0.00 3.51
211 212 3.131223 CCTAGTTCTCGCTTGGAATCTCA 59.869 47.826 0.00 0.00 34.09 3.27
212 213 3.712187 CCTAGTTCTCGCTTGGAATCTC 58.288 50.000 0.00 0.00 34.09 2.75
213 214 2.159028 GCCTAGTTCTCGCTTGGAATCT 60.159 50.000 0.00 0.00 34.09 2.40
214 215 2.205911 GCCTAGTTCTCGCTTGGAATC 58.794 52.381 0.00 0.00 34.09 2.52
215 216 1.471676 CGCCTAGTTCTCGCTTGGAAT 60.472 52.381 0.00 0.00 34.09 3.01
216 217 0.108804 CGCCTAGTTCTCGCTTGGAA 60.109 55.000 0.00 0.00 34.09 3.53
217 218 1.511305 CGCCTAGTTCTCGCTTGGA 59.489 57.895 0.00 0.00 34.09 3.53
218 219 2.167861 GCGCCTAGTTCTCGCTTGG 61.168 63.158 0.00 0.00 44.79 3.61
219 220 3.389206 GCGCCTAGTTCTCGCTTG 58.611 61.111 0.00 0.00 44.79 4.01
223 224 1.517257 CAGTGGCGCCTAGTTCTCG 60.517 63.158 29.70 3.36 0.00 4.04
224 225 0.737715 CACAGTGGCGCCTAGTTCTC 60.738 60.000 29.70 8.96 0.00 2.87
225 226 1.293498 CACAGTGGCGCCTAGTTCT 59.707 57.895 29.70 14.56 0.00 3.01
226 227 0.245539 TACACAGTGGCGCCTAGTTC 59.754 55.000 29.70 12.50 0.00 3.01
227 228 0.682852 TTACACAGTGGCGCCTAGTT 59.317 50.000 29.70 14.84 0.00 2.24
228 229 0.037605 GTTACACAGTGGCGCCTAGT 60.038 55.000 29.70 19.90 0.00 2.57
229 230 0.739813 GGTTACACAGTGGCGCCTAG 60.740 60.000 29.70 19.20 0.00 3.02
230 231 1.294138 GGTTACACAGTGGCGCCTA 59.706 57.895 29.70 11.59 0.00 3.93
231 232 2.032071 GGTTACACAGTGGCGCCT 59.968 61.111 29.70 8.67 0.00 5.52
232 233 2.281208 TGGTTACACAGTGGCGCC 60.281 61.111 22.73 22.73 0.00 6.53
233 234 2.943653 GTGGTTACACAGTGGCGC 59.056 61.111 5.31 0.00 46.90 6.53
242 243 1.071814 GCCGGGACTTGTGGTTACA 59.928 57.895 2.18 0.00 34.31 2.41
243 244 0.609662 TAGCCGGGACTTGTGGTTAC 59.390 55.000 2.18 0.00 0.00 2.50
244 245 1.575419 ATAGCCGGGACTTGTGGTTA 58.425 50.000 2.18 0.00 0.00 2.85
245 246 1.575419 TATAGCCGGGACTTGTGGTT 58.425 50.000 2.18 0.00 0.00 3.67
246 247 1.802553 ATATAGCCGGGACTTGTGGT 58.197 50.000 2.18 0.00 0.00 4.16
247 248 2.930826 AATATAGCCGGGACTTGTGG 57.069 50.000 2.18 0.00 0.00 4.17
248 249 4.638421 TCAAAAATATAGCCGGGACTTGTG 59.362 41.667 2.18 0.00 0.00 3.33
249 250 4.850680 TCAAAAATATAGCCGGGACTTGT 58.149 39.130 2.18 0.00 0.00 3.16
250 251 5.765182 AGATCAAAAATATAGCCGGGACTTG 59.235 40.000 2.18 0.00 0.00 3.16
251 252 5.765182 CAGATCAAAAATATAGCCGGGACTT 59.235 40.000 2.18 0.00 0.00 3.01
252 253 5.308825 CAGATCAAAAATATAGCCGGGACT 58.691 41.667 2.18 0.00 0.00 3.85
253 254 4.455877 CCAGATCAAAAATATAGCCGGGAC 59.544 45.833 2.18 0.00 0.00 4.46
254 255 4.651778 CCAGATCAAAAATATAGCCGGGA 58.348 43.478 2.18 0.00 0.00 5.14
255 256 3.191371 GCCAGATCAAAAATATAGCCGGG 59.809 47.826 2.18 0.00 0.00 5.73
256 257 4.074970 AGCCAGATCAAAAATATAGCCGG 58.925 43.478 0.00 0.00 0.00 6.13
257 258 4.756642 TGAGCCAGATCAAAAATATAGCCG 59.243 41.667 0.00 0.00 0.00 5.52
258 259 6.639632 TTGAGCCAGATCAAAAATATAGCC 57.360 37.500 0.00 0.00 36.28 3.93
263 264 8.632679 GGACAATATTGAGCCAGATCAAAAATA 58.367 33.333 22.16 0.00 42.21 1.40
264 265 7.495055 GGACAATATTGAGCCAGATCAAAAAT 58.505 34.615 22.16 0.00 42.21 1.82
265 266 6.404623 CGGACAATATTGAGCCAGATCAAAAA 60.405 38.462 22.16 0.00 42.21 1.94
266 267 5.066375 CGGACAATATTGAGCCAGATCAAAA 59.934 40.000 22.16 0.00 42.21 2.44
267 268 4.576053 CGGACAATATTGAGCCAGATCAAA 59.424 41.667 22.16 0.00 42.21 2.69
268 269 4.129380 CGGACAATATTGAGCCAGATCAA 58.871 43.478 22.16 0.19 43.04 2.57
269 270 3.134623 ACGGACAATATTGAGCCAGATCA 59.865 43.478 22.16 0.00 0.00 2.92
270 271 3.733337 ACGGACAATATTGAGCCAGATC 58.267 45.455 22.16 6.91 0.00 2.75
271 272 3.845781 ACGGACAATATTGAGCCAGAT 57.154 42.857 22.16 8.14 0.00 2.90
272 273 3.270027 CAACGGACAATATTGAGCCAGA 58.730 45.455 22.16 0.00 0.00 3.86
273 274 2.355756 CCAACGGACAATATTGAGCCAG 59.644 50.000 22.16 17.49 0.00 4.85
274 275 2.026729 TCCAACGGACAATATTGAGCCA 60.027 45.455 22.16 4.20 0.00 4.75
275 276 2.639065 TCCAACGGACAATATTGAGCC 58.361 47.619 22.16 19.02 0.00 4.70
276 277 4.130118 AGATCCAACGGACAATATTGAGC 58.870 43.478 22.16 12.50 32.98 4.26
277 278 5.586243 ACAAGATCCAACGGACAATATTGAG 59.414 40.000 22.16 13.98 32.98 3.02
278 279 5.496556 ACAAGATCCAACGGACAATATTGA 58.503 37.500 22.16 0.00 32.98 2.57
279 280 5.818136 ACAAGATCCAACGGACAATATTG 57.182 39.130 14.01 14.01 32.98 1.90
280 281 6.350110 CCAAACAAGATCCAACGGACAATATT 60.350 38.462 0.00 0.00 32.98 1.28
281 282 5.125417 CCAAACAAGATCCAACGGACAATAT 59.875 40.000 0.00 0.00 32.98 1.28
282 283 4.457603 CCAAACAAGATCCAACGGACAATA 59.542 41.667 0.00 0.00 32.98 1.90
283 284 3.255642 CCAAACAAGATCCAACGGACAAT 59.744 43.478 0.00 0.00 32.98 2.71
284 285 2.621055 CCAAACAAGATCCAACGGACAA 59.379 45.455 0.00 0.00 32.98 3.18
285 286 2.226330 CCAAACAAGATCCAACGGACA 58.774 47.619 0.00 0.00 32.98 4.02
286 287 1.539827 CCCAAACAAGATCCAACGGAC 59.460 52.381 0.00 0.00 32.98 4.79
287 288 1.144093 ACCCAAACAAGATCCAACGGA 59.856 47.619 0.00 0.00 35.55 4.69
288 289 1.269448 CACCCAAACAAGATCCAACGG 59.731 52.381 0.00 0.00 0.00 4.44
289 290 1.269448 CCACCCAAACAAGATCCAACG 59.731 52.381 0.00 0.00 0.00 4.10
290 291 1.000843 GCCACCCAAACAAGATCCAAC 59.999 52.381 0.00 0.00 0.00 3.77
291 292 1.133199 AGCCACCCAAACAAGATCCAA 60.133 47.619 0.00 0.00 0.00 3.53
292 293 0.482446 AGCCACCCAAACAAGATCCA 59.518 50.000 0.00 0.00 0.00 3.41
293 294 2.507407 TAGCCACCCAAACAAGATCC 57.493 50.000 0.00 0.00 0.00 3.36
294 295 6.431234 CCTATATTAGCCACCCAAACAAGATC 59.569 42.308 0.00 0.00 0.00 2.75
295 296 6.306987 CCTATATTAGCCACCCAAACAAGAT 58.693 40.000 0.00 0.00 0.00 2.40
296 297 5.398581 CCCTATATTAGCCACCCAAACAAGA 60.399 44.000 0.00 0.00 0.00 3.02
297 298 4.827284 CCCTATATTAGCCACCCAAACAAG 59.173 45.833 0.00 0.00 0.00 3.16
298 299 4.386986 CCCCTATATTAGCCACCCAAACAA 60.387 45.833 0.00 0.00 0.00 2.83
299 300 3.139397 CCCCTATATTAGCCACCCAAACA 59.861 47.826 0.00 0.00 0.00 2.83
300 301 3.763057 CCCCTATATTAGCCACCCAAAC 58.237 50.000 0.00 0.00 0.00 2.93
301 302 2.109304 GCCCCTATATTAGCCACCCAAA 59.891 50.000 0.00 0.00 0.00 3.28
302 303 1.708551 GCCCCTATATTAGCCACCCAA 59.291 52.381 0.00 0.00 0.00 4.12
303 304 1.368374 GCCCCTATATTAGCCACCCA 58.632 55.000 0.00 0.00 0.00 4.51
304 305 0.252197 CGCCCCTATATTAGCCACCC 59.748 60.000 0.00 0.00 0.00 4.61
305 306 0.392595 GCGCCCCTATATTAGCCACC 60.393 60.000 0.00 0.00 0.00 4.61
306 307 0.323629 TGCGCCCCTATATTAGCCAC 59.676 55.000 4.18 0.00 0.00 5.01
307 308 1.003118 CTTGCGCCCCTATATTAGCCA 59.997 52.381 4.18 0.00 0.00 4.75
308 309 1.679032 CCTTGCGCCCCTATATTAGCC 60.679 57.143 4.18 0.00 0.00 3.93
309 310 1.003233 ACCTTGCGCCCCTATATTAGC 59.997 52.381 4.18 0.00 0.00 3.09
310 311 3.259876 TGTACCTTGCGCCCCTATATTAG 59.740 47.826 4.18 0.00 0.00 1.73
311 312 3.241156 TGTACCTTGCGCCCCTATATTA 58.759 45.455 4.18 0.00 0.00 0.98
312 313 2.038557 CTGTACCTTGCGCCCCTATATT 59.961 50.000 4.18 0.00 0.00 1.28
313 314 1.623811 CTGTACCTTGCGCCCCTATAT 59.376 52.381 4.18 0.00 0.00 0.86
314 315 1.045407 CTGTACCTTGCGCCCCTATA 58.955 55.000 4.18 0.00 0.00 1.31
315 316 1.830145 CTGTACCTTGCGCCCCTAT 59.170 57.895 4.18 0.00 0.00 2.57
316 317 3.026431 GCTGTACCTTGCGCCCCTA 62.026 63.158 4.18 0.00 0.00 3.53
317 318 4.410400 GCTGTACCTTGCGCCCCT 62.410 66.667 4.18 0.00 0.00 4.79
323 324 0.512952 CAAGTCACGCTGTACCTTGC 59.487 55.000 0.00 0.00 0.00 4.01
324 325 0.512952 GCAAGTCACGCTGTACCTTG 59.487 55.000 11.52 11.52 36.47 3.61
325 326 0.105964 TGCAAGTCACGCTGTACCTT 59.894 50.000 0.00 0.00 0.00 3.50
326 327 0.105964 TTGCAAGTCACGCTGTACCT 59.894 50.000 0.00 0.00 0.00 3.08
327 328 0.512952 CTTGCAAGTCACGCTGTACC 59.487 55.000 18.65 0.00 0.00 3.34
328 329 1.457303 CTCTTGCAAGTCACGCTGTAC 59.543 52.381 25.19 0.00 0.00 2.90
329 330 1.605457 CCTCTTGCAAGTCACGCTGTA 60.605 52.381 25.19 2.50 0.00 2.74
330 331 0.882042 CCTCTTGCAAGTCACGCTGT 60.882 55.000 25.19 0.00 0.00 4.40
331 332 1.864862 CCTCTTGCAAGTCACGCTG 59.135 57.895 25.19 8.45 0.00 5.18
332 333 1.963338 GCCTCTTGCAAGTCACGCT 60.963 57.895 25.19 0.00 40.77 5.07
333 334 2.558313 GCCTCTTGCAAGTCACGC 59.442 61.111 25.19 17.49 40.77 5.34
342 343 0.250467 TCAGGTGACTTGCCTCTTGC 60.250 55.000 0.00 0.00 40.21 4.01
343 344 2.027377 AGATCAGGTGACTTGCCTCTTG 60.027 50.000 0.00 0.00 40.21 3.02
344 345 2.235898 GAGATCAGGTGACTTGCCTCTT 59.764 50.000 0.00 0.00 40.21 2.85
345 346 1.830477 GAGATCAGGTGACTTGCCTCT 59.170 52.381 0.00 5.03 40.21 3.69
346 347 1.470632 CGAGATCAGGTGACTTGCCTC 60.471 57.143 0.00 6.79 40.21 4.70
347 348 0.534412 CGAGATCAGGTGACTTGCCT 59.466 55.000 0.00 0.00 40.21 4.75
348 349 0.460987 CCGAGATCAGGTGACTTGCC 60.461 60.000 0.00 0.00 40.21 4.52
349 350 0.247736 ACCGAGATCAGGTGACTTGC 59.752 55.000 11.48 0.00 41.10 4.01
350 351 1.134965 GGACCGAGATCAGGTGACTTG 60.135 57.143 16.28 0.00 43.01 3.16
351 352 1.187087 GGACCGAGATCAGGTGACTT 58.813 55.000 16.28 0.00 43.01 3.01
352 353 0.039764 TGGACCGAGATCAGGTGACT 59.960 55.000 16.28 0.00 43.01 3.41
353 354 0.457851 CTGGACCGAGATCAGGTGAC 59.542 60.000 16.28 10.08 43.01 3.67
354 355 1.323271 GCTGGACCGAGATCAGGTGA 61.323 60.000 16.28 3.77 43.01 4.02
355 356 1.142748 GCTGGACCGAGATCAGGTG 59.857 63.158 16.28 5.07 43.01 4.00
356 357 1.305297 TGCTGGACCGAGATCAGGT 60.305 57.895 12.01 12.01 46.16 4.00
357 358 1.440893 CTGCTGGACCGAGATCAGG 59.559 63.158 5.78 5.78 0.00 3.86
358 359 1.227205 GCTGCTGGACCGAGATCAG 60.227 63.158 0.00 0.00 0.00 2.90
359 360 1.984026 TGCTGCTGGACCGAGATCA 60.984 57.895 0.00 0.00 0.00 2.92
360 361 1.520342 GTGCTGCTGGACCGAGATC 60.520 63.158 3.76 0.00 0.00 2.75
361 362 0.684479 TAGTGCTGCTGGACCGAGAT 60.684 55.000 11.58 0.00 34.93 2.75
362 363 0.684479 ATAGTGCTGCTGGACCGAGA 60.684 55.000 11.58 0.00 34.93 4.04
363 364 0.529337 CATAGTGCTGCTGGACCGAG 60.529 60.000 11.58 0.00 34.93 4.63
364 365 1.517361 CATAGTGCTGCTGGACCGA 59.483 57.895 11.58 0.96 34.93 4.69
365 366 1.522355 CCATAGTGCTGCTGGACCG 60.522 63.158 11.58 1.31 34.93 4.79
366 367 0.471617 ATCCATAGTGCTGCTGGACC 59.528 55.000 11.58 0.00 41.65 4.46
367 368 1.871408 CGATCCATAGTGCTGCTGGAC 60.871 57.143 10.14 7.16 41.65 4.02
368 369 0.390492 CGATCCATAGTGCTGCTGGA 59.610 55.000 10.32 10.32 42.95 3.86
369 370 0.105593 ACGATCCATAGTGCTGCTGG 59.894 55.000 0.00 0.00 0.00 4.85
370 371 1.945387 AACGATCCATAGTGCTGCTG 58.055 50.000 0.00 0.00 0.00 4.41
434 435 8.725148 GCCAACTAGACATAGAATTTGATATGG 58.275 37.037 0.00 0.00 34.36 2.74
442 443 4.455606 GGCTGCCAACTAGACATAGAATT 58.544 43.478 15.17 0.00 32.93 2.17
465 466 2.228822 CCATCTTTGTACAGGTTGCCAC 59.771 50.000 0.00 0.00 0.00 5.01
520 551 4.336433 CGATATGTTTGACCCATCTGCTTT 59.664 41.667 0.00 0.00 0.00 3.51
717 785 3.561143 ACGAATTGCCATAAGCCCATAA 58.439 40.909 0.00 0.00 42.71 1.90
718 786 3.222173 ACGAATTGCCATAAGCCCATA 57.778 42.857 0.00 0.00 42.71 2.74
719 787 2.071778 ACGAATTGCCATAAGCCCAT 57.928 45.000 0.00 0.00 42.71 4.00
720 788 1.846007 AACGAATTGCCATAAGCCCA 58.154 45.000 0.00 0.00 42.71 5.36
721 789 2.481276 GGAAACGAATTGCCATAAGCCC 60.481 50.000 0.00 0.00 42.71 5.19
722 790 2.427095 AGGAAACGAATTGCCATAAGCC 59.573 45.455 0.00 0.00 42.71 4.35
723 791 3.438360 CAGGAAACGAATTGCCATAAGC 58.562 45.455 0.00 0.00 44.14 3.09
724 792 3.119531 TGCAGGAAACGAATTGCCATAAG 60.120 43.478 0.00 0.00 35.75 1.73
1083 2423 3.999705 CTCCTGGAGCCAGCCCTCT 63.000 68.421 11.42 0.00 42.35 3.69
1512 2864 3.003482 AGGCGTACTTGATCTGATCGTAC 59.997 47.826 18.28 18.28 0.00 3.67
1612 2964 0.882927 TGCAAGTTTTCGGGGACTCG 60.883 55.000 0.00 0.00 0.00 4.18
1619 2971 6.002062 AGACTTAAGAATGCAAGTTTTCGG 57.998 37.500 10.09 0.00 35.17 4.30
1620 2972 6.738649 GCTAGACTTAAGAATGCAAGTTTTCG 59.261 38.462 10.09 0.00 35.17 3.46
1687 3042 3.600433 TCACTCCCAAACCCTTACCTAA 58.400 45.455 0.00 0.00 0.00 2.69
1692 3047 3.655777 ACAGAATCACTCCCAAACCCTTA 59.344 43.478 0.00 0.00 0.00 2.69
1742 3097 3.539604 CCTGCTCTGAAGTTAATCCTGG 58.460 50.000 0.00 0.00 0.00 4.45
1743 3098 3.198635 TCCCTGCTCTGAAGTTAATCCTG 59.801 47.826 0.00 0.00 0.00 3.86
1828 3183 6.273825 GGACAGAATATTTCGCAGAGAGTTA 58.726 40.000 0.00 0.00 38.43 2.24
1887 3243 5.185454 CAGCCCTGACATTAACACAGAATA 58.815 41.667 0.00 0.00 34.07 1.75
1934 3290 9.131791 ACAAAGGAGCTATTGAAAGTTTAGAAA 57.868 29.630 11.97 0.00 0.00 2.52
2274 3700 2.289592 TCCTAGGAGCGGTAGATTCC 57.710 55.000 7.62 0.00 0.00 3.01
2280 3706 1.074084 CCTCAGATCCTAGGAGCGGTA 59.926 57.143 23.71 11.87 35.44 4.02
2291 3717 1.965754 AACAGCCGCTCCTCAGATCC 61.966 60.000 0.00 0.00 0.00 3.36
2379 3805 3.192466 CAAATACTAAGGTCCCGTTCGG 58.808 50.000 4.08 4.08 0.00 4.30
2388 3814 9.420118 TCAAATTATGATGCCAAATACTAAGGT 57.580 29.630 0.00 0.00 31.50 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.