Multiple sequence alignment - TraesCS3D01G239300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G239300 chr3D 100.000 3209 0 0 1 3209 331192443 331195651 0.000000e+00 5927.0
1 TraesCS3D01G239300 chr3D 100.000 109 0 0 2356 2464 331194689 331194797 5.430000e-48 202.0
2 TraesCS3D01G239300 chr3D 100.000 109 0 0 2247 2355 331194798 331194906 5.430000e-48 202.0
3 TraesCS3D01G239300 chr3D 97.143 35 0 1 2562 2596 331194959 331194992 1.240000e-04 58.4
4 TraesCS3D01G239300 chr3D 97.143 35 0 1 2517 2550 331195004 331195038 1.240000e-04 58.4
5 TraesCS3D01G239300 chr3B 97.455 2358 51 7 1 2355 430522962 430525313 0.000000e+00 4013.0
6 TraesCS3D01G239300 chr3B 91.608 858 17 12 2358 3209 430525207 430526015 0.000000e+00 1134.0
7 TraesCS3D01G239300 chr3B 88.043 92 7 3 523 614 381754759 381754846 4.380000e-19 106.0
8 TraesCS3D01G239300 chr3B 83.158 95 11 4 525 618 520369897 520369987 7.380000e-12 82.4
9 TraesCS3D01G239300 chr3A 96.742 1780 50 6 576 2355 448308133 448309904 0.000000e+00 2959.0
10 TraesCS3D01G239300 chr3A 90.893 582 29 5 1 560 448307360 448307939 0.000000e+00 760.0
11 TraesCS3D01G239300 chr3A 91.750 400 16 6 2810 3209 448310227 448310609 1.010000e-149 540.0
12 TraesCS3D01G239300 chr3A 88.400 250 18 6 2562 2809 448309957 448310197 1.130000e-74 291.0
13 TraesCS3D01G239300 chr3A 92.746 193 11 2 2358 2550 448309801 448309990 3.150000e-70 276.0
14 TraesCS3D01G239300 chr3A 87.209 86 7 3 531 616 672085903 672085984 9.480000e-16 95.3
15 TraesCS3D01G239300 chr7A 82.653 98 10 5 518 614 623742096 623742187 2.650000e-11 80.5
16 TraesCS3D01G239300 chr7A 80.952 105 12 4 518 615 678142728 678142625 3.430000e-10 76.8
17 TraesCS3D01G239300 chr7D 81.081 111 10 8 517 618 419411891 419411783 9.540000e-11 78.7
18 TraesCS3D01G239300 chr7D 87.931 58 5 2 559 614 586970033 586970090 2.070000e-07 67.6
19 TraesCS3D01G239300 chr4A 81.633 98 11 5 517 614 696171099 696171189 1.230000e-09 75.0
20 TraesCS3D01G239300 chr4A 93.023 43 3 0 576 618 711899109 711899067 2.670000e-06 63.9
21 TraesCS3D01G239300 chr1B 95.556 45 2 0 572 616 509151422 509151466 4.440000e-09 73.1
22 TraesCS3D01G239300 chr1A 93.478 46 2 1 515 560 550342514 550342558 2.070000e-07 67.6
23 TraesCS3D01G239300 chr7B 91.304 46 4 0 569 614 657905818 657905863 2.670000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G239300 chr3D 331192443 331195651 3208 False 1289.56 5927 98.8572 1 3209 5 chr3D.!!$F1 3208
1 TraesCS3D01G239300 chr3B 430522962 430526015 3053 False 2573.50 4013 94.5315 1 3209 2 chr3B.!!$F3 3208
2 TraesCS3D01G239300 chr3A 448307360 448310609 3249 False 965.20 2959 92.1062 1 3209 5 chr3A.!!$F2 3208

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
788 989 1.812235 TTGCCACTGAGTGTAGCATG 58.188 50.0 15.43 0.0 32.66 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2653 2854 0.60864 AGTTTCTCTCGACGCCCAAT 59.391 50.0 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
603 804 6.469782 AATCAGCGACATTTATTTTGGGAT 57.530 33.333 0.00 0.00 0.00 3.85
788 989 1.812235 TTGCCACTGAGTGTAGCATG 58.188 50.000 15.43 0.00 32.66 4.06
802 1003 8.363390 TGAGTGTAGCATGATTAGAGGATTTAG 58.637 37.037 0.00 0.00 0.00 1.85
807 1008 6.767456 AGCATGATTAGAGGATTTAGTGGAG 58.233 40.000 0.00 0.00 0.00 3.86
1377 1578 4.381292 GGCATTGATAAGAGCAGCTGTTTT 60.381 41.667 16.64 2.11 0.00 2.43
1563 1764 4.851014 CACAATTACACTGTTACATTGGCG 59.149 41.667 7.58 0.00 0.00 5.69
1626 1827 8.838452 AATTCTCTTTATACAAGTACGACTCG 57.162 34.615 0.00 0.00 0.00 4.18
1962 2163 1.211703 TGGGAGCTTGACAAGACACAA 59.788 47.619 19.51 0.00 0.00 3.33
2205 2406 1.002087 CCTCGGCTGGATATTACCACC 59.998 57.143 0.00 0.00 35.91 4.61
2210 2411 5.335261 TCGGCTGGATATTACCACCTAATA 58.665 41.667 0.00 0.00 35.91 0.98
2211 2412 5.186409 TCGGCTGGATATTACCACCTAATAC 59.814 44.000 0.00 0.00 35.91 1.89
2212 2413 5.187186 CGGCTGGATATTACCACCTAATACT 59.813 44.000 0.00 0.00 35.91 2.12
2214 2415 6.879458 GGCTGGATATTACCACCTAATACTTG 59.121 42.308 0.00 0.00 35.91 3.16
2215 2416 7.450903 GCTGGATATTACCACCTAATACTTGT 58.549 38.462 0.00 0.00 35.91 3.16
2216 2417 8.591072 GCTGGATATTACCACCTAATACTTGTA 58.409 37.037 0.00 0.00 35.91 2.41
2240 2441 2.415512 GGTCTGTACCGTTGATTTGCTC 59.584 50.000 0.00 0.00 35.62 4.26
2243 2444 1.001068 TGTACCGTTGATTTGCTCGGA 59.999 47.619 9.37 0.00 44.86 4.55
2291 2492 6.316140 CGTCTTTTGTGGAAGATGGATGATAA 59.684 38.462 0.00 0.00 38.45 1.75
2293 2494 7.970614 GTCTTTTGTGGAAGATGGATGATAAAC 59.029 37.037 0.00 0.00 37.91 2.01
2294 2495 7.890127 TCTTTTGTGGAAGATGGATGATAAACT 59.110 33.333 0.00 0.00 30.98 2.66
2342 2543 4.340263 CGTGATTGATGCAATTGTCTCTG 58.660 43.478 7.40 0.00 33.90 3.35
2343 2544 4.142752 CGTGATTGATGCAATTGTCTCTGT 60.143 41.667 7.40 0.00 33.90 3.41
2344 2545 5.093457 GTGATTGATGCAATTGTCTCTGTG 58.907 41.667 7.40 0.00 33.90 3.66
2345 2546 5.005094 TGATTGATGCAATTGTCTCTGTGA 58.995 37.500 7.40 0.00 33.90 3.58
2346 2547 5.650703 TGATTGATGCAATTGTCTCTGTGAT 59.349 36.000 7.40 0.00 33.90 3.06
2347 2548 4.957759 TGATGCAATTGTCTCTGTGATG 57.042 40.909 7.40 0.00 0.00 3.07
2349 2550 4.634443 TGATGCAATTGTCTCTGTGATGAG 59.366 41.667 7.40 0.00 35.52 2.90
2350 2551 4.276058 TGCAATTGTCTCTGTGATGAGA 57.724 40.909 7.40 0.00 40.39 3.27
2351 2552 4.840271 TGCAATTGTCTCTGTGATGAGAT 58.160 39.130 7.40 0.00 43.84 2.75
2352 2553 5.250982 TGCAATTGTCTCTGTGATGAGATT 58.749 37.500 7.40 0.00 43.84 2.40
2353 2554 6.408869 TGCAATTGTCTCTGTGATGAGATTA 58.591 36.000 7.40 0.00 43.84 1.75
2354 2555 6.880529 TGCAATTGTCTCTGTGATGAGATTAA 59.119 34.615 7.40 0.00 43.84 1.40
2355 2556 7.148356 TGCAATTGTCTCTGTGATGAGATTAAC 60.148 37.037 7.40 0.00 43.84 2.01
2356 2557 7.148356 GCAATTGTCTCTGTGATGAGATTAACA 60.148 37.037 7.40 0.00 43.84 2.41
2357 2558 8.724229 CAATTGTCTCTGTGATGAGATTAACAA 58.276 33.333 0.00 0.00 43.84 2.83
2358 2559 8.853077 ATTGTCTCTGTGATGAGATTAACAAA 57.147 30.769 0.00 0.00 43.84 2.83
2359 2560 7.658179 TGTCTCTGTGATGAGATTAACAAAC 57.342 36.000 0.00 0.00 43.84 2.93
2360 2561 7.216494 TGTCTCTGTGATGAGATTAACAAACA 58.784 34.615 0.00 0.00 43.84 2.83
2361 2562 7.714813 TGTCTCTGTGATGAGATTAACAAACAA 59.285 33.333 0.00 0.00 43.84 2.83
2362 2563 8.559536 GTCTCTGTGATGAGATTAACAAACAAA 58.440 33.333 0.00 0.00 43.84 2.83
2363 2564 9.119418 TCTCTGTGATGAGATTAACAAACAAAA 57.881 29.630 0.00 0.00 38.08 2.44
2364 2565 9.173939 CTCTGTGATGAGATTAACAAACAAAAC 57.826 33.333 0.00 0.00 36.23 2.43
2365 2566 8.134895 TCTGTGATGAGATTAACAAACAAAACC 58.865 33.333 0.00 0.00 0.00 3.27
2366 2567 7.776107 TGTGATGAGATTAACAAACAAAACCA 58.224 30.769 0.00 0.00 0.00 3.67
2367 2568 7.920151 TGTGATGAGATTAACAAACAAAACCAG 59.080 33.333 0.00 0.00 0.00 4.00
2368 2569 7.920682 GTGATGAGATTAACAAACAAAACCAGT 59.079 33.333 0.00 0.00 0.00 4.00
2369 2570 7.920151 TGATGAGATTAACAAACAAAACCAGTG 59.080 33.333 0.00 0.00 0.00 3.66
2370 2571 7.397892 TGAGATTAACAAACAAAACCAGTGA 57.602 32.000 0.00 0.00 0.00 3.41
2371 2572 8.006298 TGAGATTAACAAACAAAACCAGTGAT 57.994 30.769 0.00 0.00 0.00 3.06
2372 2573 8.134895 TGAGATTAACAAACAAAACCAGTGATC 58.865 33.333 0.00 0.00 0.00 2.92
2373 2574 7.433680 AGATTAACAAACAAAACCAGTGATCC 58.566 34.615 0.00 0.00 0.00 3.36
2374 2575 6.783708 TTAACAAACAAAACCAGTGATCCT 57.216 33.333 0.00 0.00 0.00 3.24
2375 2576 4.918810 ACAAACAAAACCAGTGATCCTC 57.081 40.909 0.00 0.00 0.00 3.71
2376 2577 3.315191 ACAAACAAAACCAGTGATCCTCG 59.685 43.478 0.00 0.00 0.00 4.63
2377 2578 2.930826 ACAAAACCAGTGATCCTCGT 57.069 45.000 0.00 0.00 0.00 4.18
2378 2579 2.767505 ACAAAACCAGTGATCCTCGTC 58.232 47.619 0.00 0.00 0.00 4.20
2379 2580 2.368875 ACAAAACCAGTGATCCTCGTCT 59.631 45.455 0.00 0.00 0.00 4.18
2380 2581 3.181454 ACAAAACCAGTGATCCTCGTCTT 60.181 43.478 0.00 0.00 0.00 3.01
2381 2582 3.771577 AAACCAGTGATCCTCGTCTTT 57.228 42.857 0.00 0.00 0.00 2.52
2382 2583 3.771577 AACCAGTGATCCTCGTCTTTT 57.228 42.857 0.00 0.00 0.00 2.27
2383 2584 3.045601 ACCAGTGATCCTCGTCTTTTG 57.954 47.619 0.00 0.00 0.00 2.44
2384 2585 2.368875 ACCAGTGATCCTCGTCTTTTGT 59.631 45.455 0.00 0.00 0.00 2.83
2385 2586 2.738846 CCAGTGATCCTCGTCTTTTGTG 59.261 50.000 0.00 0.00 0.00 3.33
2386 2587 2.738846 CAGTGATCCTCGTCTTTTGTGG 59.261 50.000 0.00 0.00 0.00 4.17
2387 2588 2.632996 AGTGATCCTCGTCTTTTGTGGA 59.367 45.455 0.00 0.00 0.00 4.02
2388 2589 3.071023 AGTGATCCTCGTCTTTTGTGGAA 59.929 43.478 0.00 0.00 0.00 3.53
2389 2590 3.433615 GTGATCCTCGTCTTTTGTGGAAG 59.566 47.826 0.00 0.00 0.00 3.46
2390 2591 3.323691 TGATCCTCGTCTTTTGTGGAAGA 59.676 43.478 0.00 0.00 33.44 2.87
2391 2592 4.020218 TGATCCTCGTCTTTTGTGGAAGAT 60.020 41.667 0.00 0.00 37.91 2.40
2392 2593 3.664107 TCCTCGTCTTTTGTGGAAGATG 58.336 45.455 1.40 1.40 41.76 2.90
2393 2594 2.744202 CCTCGTCTTTTGTGGAAGATGG 59.256 50.000 6.92 0.54 41.10 3.51
2394 2595 3.557054 CCTCGTCTTTTGTGGAAGATGGA 60.557 47.826 6.92 0.99 41.10 3.41
2395 2596 4.256920 CTCGTCTTTTGTGGAAGATGGAT 58.743 43.478 6.92 0.00 41.10 3.41
2396 2597 4.002982 TCGTCTTTTGTGGAAGATGGATG 58.997 43.478 6.92 0.00 41.10 3.51
2397 2598 4.002982 CGTCTTTTGTGGAAGATGGATGA 58.997 43.478 0.00 0.00 38.45 2.92
2398 2599 4.637534 CGTCTTTTGTGGAAGATGGATGAT 59.362 41.667 0.00 0.00 38.45 2.45
2399 2600 5.817296 CGTCTTTTGTGGAAGATGGATGATA 59.183 40.000 0.00 0.00 38.45 2.15
2400 2601 6.316140 CGTCTTTTGTGGAAGATGGATGATAA 59.684 38.462 0.00 0.00 38.45 1.75
2401 2602 7.148255 CGTCTTTTGTGGAAGATGGATGATAAA 60.148 37.037 0.00 0.00 38.45 1.40
2402 2603 7.970614 GTCTTTTGTGGAAGATGGATGATAAAC 59.029 37.037 0.00 0.00 37.91 2.01
2403 2604 7.890127 TCTTTTGTGGAAGATGGATGATAAACT 59.110 33.333 0.00 0.00 30.98 2.66
2404 2605 7.630242 TTTGTGGAAGATGGATGATAAACTC 57.370 36.000 0.00 0.00 0.00 3.01
2405 2606 6.566079 TGTGGAAGATGGATGATAAACTCT 57.434 37.500 0.00 0.00 0.00 3.24
2406 2607 6.586344 TGTGGAAGATGGATGATAAACTCTC 58.414 40.000 0.00 0.00 0.00 3.20
2407 2608 6.385176 TGTGGAAGATGGATGATAAACTCTCT 59.615 38.462 0.00 0.00 0.00 3.10
2408 2609 6.928492 GTGGAAGATGGATGATAAACTCTCTC 59.072 42.308 0.00 0.00 0.00 3.20
2409 2610 6.042552 TGGAAGATGGATGATAAACTCTCTCC 59.957 42.308 0.00 0.00 0.00 3.71
2410 2611 6.432403 AAGATGGATGATAAACTCTCTCCC 57.568 41.667 0.00 0.00 0.00 4.30
2411 2612 5.725490 AGATGGATGATAAACTCTCTCCCT 58.275 41.667 0.00 0.00 0.00 4.20
2412 2613 5.779771 AGATGGATGATAAACTCTCTCCCTC 59.220 44.000 0.00 0.00 0.00 4.30
2413 2614 5.149584 TGGATGATAAACTCTCTCCCTCT 57.850 43.478 0.00 0.00 0.00 3.69
2414 2615 5.144100 TGGATGATAAACTCTCTCCCTCTC 58.856 45.833 0.00 0.00 0.00 3.20
2415 2616 5.103301 TGGATGATAAACTCTCTCCCTCTCT 60.103 44.000 0.00 0.00 0.00 3.10
2416 2617 5.838521 GGATGATAAACTCTCTCCCTCTCTT 59.161 44.000 0.00 0.00 0.00 2.85
2417 2618 7.007723 GGATGATAAACTCTCTCCCTCTCTTA 58.992 42.308 0.00 0.00 0.00 2.10
2418 2619 7.507616 GGATGATAAACTCTCTCCCTCTCTTAA 59.492 40.741 0.00 0.00 0.00 1.85
2419 2620 9.088987 GATGATAAACTCTCTCCCTCTCTTAAT 57.911 37.037 0.00 0.00 0.00 1.40
2420 2621 8.846423 TGATAAACTCTCTCCCTCTCTTAATT 57.154 34.615 0.00 0.00 0.00 1.40
2421 2622 9.273137 TGATAAACTCTCTCCCTCTCTTAATTT 57.727 33.333 0.00 0.00 0.00 1.82
2428 2629 9.554395 CTCTCTCCCTCTCTTAATTTATTTTCC 57.446 37.037 0.00 0.00 0.00 3.13
2429 2630 8.495260 TCTCTCCCTCTCTTAATTTATTTTCCC 58.505 37.037 0.00 0.00 0.00 3.97
2430 2631 7.280356 TCTCCCTCTCTTAATTTATTTTCCCG 58.720 38.462 0.00 0.00 0.00 5.14
2431 2632 6.965607 TCCCTCTCTTAATTTATTTTCCCGT 58.034 36.000 0.00 0.00 0.00 5.28
2432 2633 6.826741 TCCCTCTCTTAATTTATTTTCCCGTG 59.173 38.462 0.00 0.00 0.00 4.94
2433 2634 6.826741 CCCTCTCTTAATTTATTTTCCCGTGA 59.173 38.462 0.00 0.00 0.00 4.35
2434 2635 7.502561 CCCTCTCTTAATTTATTTTCCCGTGAT 59.497 37.037 0.00 0.00 0.00 3.06
2435 2636 8.903820 CCTCTCTTAATTTATTTTCCCGTGATT 58.096 33.333 0.00 0.00 0.00 2.57
2436 2637 9.722056 CTCTCTTAATTTATTTTCCCGTGATTG 57.278 33.333 0.00 0.00 0.00 2.67
2437 2638 9.456147 TCTCTTAATTTATTTTCCCGTGATTGA 57.544 29.630 0.00 0.00 0.00 2.57
2440 2641 8.641499 TTAATTTATTTTCCCGTGATTGATGC 57.359 30.769 0.00 0.00 0.00 3.91
2441 2642 5.651387 TTTATTTTCCCGTGATTGATGCA 57.349 34.783 0.00 0.00 0.00 3.96
2442 2643 5.651387 TTATTTTCCCGTGATTGATGCAA 57.349 34.783 0.00 0.00 0.00 4.08
2443 2644 4.741321 ATTTTCCCGTGATTGATGCAAT 57.259 36.364 0.00 0.00 36.72 3.56
2444 2645 4.533919 TTTTCCCGTGATTGATGCAATT 57.466 36.364 0.00 0.00 33.90 2.32
2445 2646 3.507103 TTCCCGTGATTGATGCAATTG 57.493 42.857 0.00 0.00 33.90 2.32
2446 2647 2.445427 TCCCGTGATTGATGCAATTGT 58.555 42.857 7.40 0.00 33.90 2.71
2447 2648 2.423185 TCCCGTGATTGATGCAATTGTC 59.577 45.455 7.40 0.00 33.90 3.18
2448 2649 2.424601 CCCGTGATTGATGCAATTGTCT 59.575 45.455 7.40 0.00 33.90 3.41
2449 2650 3.488047 CCCGTGATTGATGCAATTGTCTC 60.488 47.826 7.40 5.00 33.90 3.36
2537 2738 3.557577 TGCCATTTCTCGTTTCACATG 57.442 42.857 0.00 0.00 0.00 3.21
2538 2739 3.145286 TGCCATTTCTCGTTTCACATGA 58.855 40.909 0.00 0.00 0.00 3.07
2539 2740 3.758023 TGCCATTTCTCGTTTCACATGAT 59.242 39.130 0.00 0.00 0.00 2.45
2540 2741 4.100529 GCCATTTCTCGTTTCACATGATG 58.899 43.478 0.00 0.00 0.00 3.07
2541 2742 4.100529 CCATTTCTCGTTTCACATGATGC 58.899 43.478 0.00 0.00 0.00 3.91
2542 2743 4.379708 CCATTTCTCGTTTCACATGATGCA 60.380 41.667 0.00 0.00 0.00 3.96
2543 2744 3.811722 TTCTCGTTTCACATGATGCAC 57.188 42.857 0.00 0.00 0.00 4.57
2544 2745 2.765122 TCTCGTTTCACATGATGCACA 58.235 42.857 0.00 0.00 0.00 4.57
2545 2746 3.337358 TCTCGTTTCACATGATGCACAT 58.663 40.909 0.00 0.00 40.17 3.21
2546 2747 3.752747 TCTCGTTTCACATGATGCACATT 59.247 39.130 0.00 0.00 37.07 2.71
2547 2748 4.216042 TCTCGTTTCACATGATGCACATTT 59.784 37.500 0.00 0.00 37.07 2.32
2548 2749 4.475028 TCGTTTCACATGATGCACATTTC 58.525 39.130 0.00 0.00 37.07 2.17
2549 2750 4.216042 TCGTTTCACATGATGCACATTTCT 59.784 37.500 0.00 0.00 37.07 2.52
2550 2751 4.556135 CGTTTCACATGATGCACATTTCTC 59.444 41.667 0.00 0.00 37.07 2.87
2551 2752 4.345271 TTCACATGATGCACATTTCTCG 57.655 40.909 0.00 0.00 37.07 4.04
2552 2753 3.337358 TCACATGATGCACATTTCTCGT 58.663 40.909 0.00 0.00 37.07 4.18
2553 2754 3.752747 TCACATGATGCACATTTCTCGTT 59.247 39.130 0.00 0.00 37.07 3.85
2554 2755 4.216042 TCACATGATGCACATTTCTCGTTT 59.784 37.500 0.00 0.00 37.07 3.60
2555 2756 4.556135 CACATGATGCACATTTCTCGTTTC 59.444 41.667 0.00 0.00 37.07 2.78
2556 2757 4.216042 ACATGATGCACATTTCTCGTTTCA 59.784 37.500 0.00 0.00 37.07 2.69
2557 2758 4.145876 TGATGCACATTTCTCGTTTCAC 57.854 40.909 0.00 0.00 0.00 3.18
2558 2759 3.563390 TGATGCACATTTCTCGTTTCACA 59.437 39.130 0.00 0.00 0.00 3.58
2559 2760 4.216042 TGATGCACATTTCTCGTTTCACAT 59.784 37.500 0.00 0.00 0.00 3.21
2560 2761 3.887741 TGCACATTTCTCGTTTCACATG 58.112 40.909 0.00 0.00 0.00 3.21
2561 2762 3.563390 TGCACATTTCTCGTTTCACATGA 59.437 39.130 0.00 0.00 0.00 3.07
2562 2763 4.216042 TGCACATTTCTCGTTTCACATGAT 59.784 37.500 0.00 0.00 0.00 2.45
2563 2764 4.556135 GCACATTTCTCGTTTCACATGATG 59.444 41.667 0.00 0.00 0.00 3.07
2564 2765 4.556135 CACATTTCTCGTTTCACATGATGC 59.444 41.667 0.00 0.00 0.00 3.91
2565 2766 4.216042 ACATTTCTCGTTTCACATGATGCA 59.784 37.500 0.00 0.00 0.00 3.96
2566 2767 3.811722 TTCTCGTTTCACATGATGCAC 57.188 42.857 0.00 0.00 0.00 4.57
2567 2768 2.765122 TCTCGTTTCACATGATGCACA 58.235 42.857 0.00 0.00 0.00 4.57
2568 2769 3.337358 TCTCGTTTCACATGATGCACAT 58.663 40.909 0.00 0.00 40.17 3.21
2569 2770 3.752747 TCTCGTTTCACATGATGCACATT 59.247 39.130 0.00 0.00 37.07 2.71
2570 2771 4.216042 TCTCGTTTCACATGATGCACATTT 59.784 37.500 0.00 0.00 37.07 2.32
2571 2772 4.475028 TCGTTTCACATGATGCACATTTC 58.525 39.130 0.00 0.00 37.07 2.17
2572 2773 4.216042 TCGTTTCACATGATGCACATTTCT 59.784 37.500 0.00 0.00 37.07 2.52
2573 2774 4.556135 CGTTTCACATGATGCACATTTCTC 59.444 41.667 0.00 0.00 37.07 2.87
2574 2775 4.345271 TTCACATGATGCACATTTCTCG 57.655 40.909 0.00 0.00 37.07 4.04
2575 2776 3.337358 TCACATGATGCACATTTCTCGT 58.663 40.909 0.00 0.00 37.07 4.18
2576 2777 3.752747 TCACATGATGCACATTTCTCGTT 59.247 39.130 0.00 0.00 37.07 3.85
2577 2778 4.216042 TCACATGATGCACATTTCTCGTTT 59.784 37.500 0.00 0.00 37.07 3.60
2578 2779 4.556135 CACATGATGCACATTTCTCGTTTC 59.444 41.667 0.00 0.00 37.07 2.78
2579 2780 4.216042 ACATGATGCACATTTCTCGTTTCA 59.784 37.500 0.00 0.00 37.07 2.69
2580 2781 4.145876 TGATGCACATTTCTCGTTTCAC 57.854 40.909 0.00 0.00 0.00 3.18
2581 2782 3.563390 TGATGCACATTTCTCGTTTCACA 59.437 39.130 0.00 0.00 0.00 3.58
2582 2783 4.216042 TGATGCACATTTCTCGTTTCACAT 59.784 37.500 0.00 0.00 0.00 3.21
2653 2854 3.567585 TGGCGATCAAATTTCTTGTCACA 59.432 39.130 0.00 0.00 0.00 3.58
2926 3158 0.817654 TGATGTAGTGGTCTCCGCTG 59.182 55.000 11.49 0.00 44.79 5.18
2986 3220 0.392595 CCATCTGCTCTGCTGCTTGA 60.393 55.000 0.00 0.00 0.00 3.02
3185 3419 1.332195 CCTGAGGATCCGATGTGCTA 58.668 55.000 5.98 0.00 0.00 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
438 461 8.902540 AACACTGAACAAGAACATATAGACAA 57.097 30.769 0.00 0.00 0.00 3.18
515 538 5.601313 TGGGACAGAGGGAGTATATGTTAAC 59.399 44.000 0.00 0.00 0.00 2.01
603 804 5.104527 CCAACTATGTCAAATACTCCCTCCA 60.105 44.000 0.00 0.00 0.00 3.86
995 1196 6.313164 CCATGACGAATCATCTTCCATGATAG 59.687 42.308 0.00 0.00 44.13 2.08
1377 1578 2.050144 AGCCCACAAGAAGAAGAGACA 58.950 47.619 0.00 0.00 0.00 3.41
1563 1764 3.190874 CTCAGGTACCTGCTTCGATTTC 58.809 50.000 33.39 0.00 43.31 2.17
1626 1827 4.504858 CAGTTACCCATGAACTACTCCAC 58.495 47.826 0.00 0.00 35.36 4.02
1962 2163 0.904865 TCCGACTCACCTCTTGCCAT 60.905 55.000 0.00 0.00 0.00 4.40
2205 2406 5.825507 GGTACAGACCGGTACAAGTATTAG 58.174 45.833 7.34 0.00 44.26 1.73
2234 2435 4.116238 GGTTTTGTTTGATTCCGAGCAAA 58.884 39.130 0.00 0.00 38.71 3.68
2240 2441 4.300189 TCACTGGTTTTGTTTGATTCCG 57.700 40.909 0.00 0.00 0.00 4.30
2243 2444 5.278463 CGAGGATCACTGGTTTTGTTTGATT 60.278 40.000 0.00 0.00 33.17 2.57
2249 2450 2.368875 AGACGAGGATCACTGGTTTTGT 59.631 45.455 0.00 0.00 38.35 2.83
2293 2494 9.554395 GGAAAATAAATTAAGAGAGGGAGAGAG 57.446 37.037 0.00 0.00 0.00 3.20
2294 2495 8.495260 GGGAAAATAAATTAAGAGAGGGAGAGA 58.505 37.037 0.00 0.00 0.00 3.10
2342 2543 7.920682 ACTGGTTTTGTTTGTTAATCTCATCAC 59.079 33.333 0.00 0.00 0.00 3.06
2343 2544 7.920151 CACTGGTTTTGTTTGTTAATCTCATCA 59.080 33.333 0.00 0.00 0.00 3.07
2344 2545 8.134895 TCACTGGTTTTGTTTGTTAATCTCATC 58.865 33.333 0.00 0.00 0.00 2.92
2345 2546 8.006298 TCACTGGTTTTGTTTGTTAATCTCAT 57.994 30.769 0.00 0.00 0.00 2.90
2346 2547 7.397892 TCACTGGTTTTGTTTGTTAATCTCA 57.602 32.000 0.00 0.00 0.00 3.27
2347 2548 7.595130 GGATCACTGGTTTTGTTTGTTAATCTC 59.405 37.037 0.00 0.00 0.00 2.75
2349 2550 7.433680 AGGATCACTGGTTTTGTTTGTTAATC 58.566 34.615 0.00 0.00 0.00 1.75
2350 2551 7.360113 AGGATCACTGGTTTTGTTTGTTAAT 57.640 32.000 0.00 0.00 0.00 1.40
2351 2552 6.459024 CGAGGATCACTGGTTTTGTTTGTTAA 60.459 38.462 0.00 0.00 33.17 2.01
2352 2553 5.008217 CGAGGATCACTGGTTTTGTTTGTTA 59.992 40.000 0.00 0.00 33.17 2.41
2353 2554 4.202010 CGAGGATCACTGGTTTTGTTTGTT 60.202 41.667 0.00 0.00 33.17 2.83
2354 2555 3.315191 CGAGGATCACTGGTTTTGTTTGT 59.685 43.478 0.00 0.00 33.17 2.83
2355 2556 3.315191 ACGAGGATCACTGGTTTTGTTTG 59.685 43.478 0.00 0.00 34.11 2.93
2356 2557 3.551846 ACGAGGATCACTGGTTTTGTTT 58.448 40.909 0.00 0.00 34.11 2.83
2357 2558 3.139077 GACGAGGATCACTGGTTTTGTT 58.861 45.455 0.00 0.00 38.35 2.83
2358 2559 2.368875 AGACGAGGATCACTGGTTTTGT 59.631 45.455 0.00 0.00 38.35 2.83
2359 2560 3.045601 AGACGAGGATCACTGGTTTTG 57.954 47.619 0.00 0.00 38.35 2.44
2360 2561 3.771577 AAGACGAGGATCACTGGTTTT 57.228 42.857 0.00 0.00 38.35 2.43
2361 2562 3.771577 AAAGACGAGGATCACTGGTTT 57.228 42.857 0.00 0.00 38.35 3.27
2362 2563 3.181454 ACAAAAGACGAGGATCACTGGTT 60.181 43.478 0.00 0.00 38.35 3.67
2363 2564 2.368875 ACAAAAGACGAGGATCACTGGT 59.631 45.455 0.00 0.00 41.18 4.00
2364 2565 2.738846 CACAAAAGACGAGGATCACTGG 59.261 50.000 0.00 0.00 33.17 4.00
2365 2566 2.738846 CCACAAAAGACGAGGATCACTG 59.261 50.000 0.00 0.00 33.17 3.66
2366 2567 2.632996 TCCACAAAAGACGAGGATCACT 59.367 45.455 0.00 0.00 33.17 3.41
2367 2568 3.040147 TCCACAAAAGACGAGGATCAC 57.960 47.619 0.00 0.00 33.17 3.06
2368 2569 3.323691 TCTTCCACAAAAGACGAGGATCA 59.676 43.478 0.00 0.00 30.38 2.92
2369 2570 3.926616 TCTTCCACAAAAGACGAGGATC 58.073 45.455 0.00 0.00 30.38 3.36
2370 2571 4.256920 CATCTTCCACAAAAGACGAGGAT 58.743 43.478 0.00 0.00 38.06 3.24
2371 2572 3.557054 CCATCTTCCACAAAAGACGAGGA 60.557 47.826 0.00 0.00 38.06 3.71
2372 2573 2.744202 CCATCTTCCACAAAAGACGAGG 59.256 50.000 0.00 0.00 38.06 4.63
2373 2574 3.664107 TCCATCTTCCACAAAAGACGAG 58.336 45.455 0.00 0.00 38.06 4.18
2374 2575 3.762407 TCCATCTTCCACAAAAGACGA 57.238 42.857 0.00 0.00 38.06 4.20
2375 2576 4.002982 TCATCCATCTTCCACAAAAGACG 58.997 43.478 0.00 0.00 38.06 4.18
2376 2577 7.630242 TTATCATCCATCTTCCACAAAAGAC 57.370 36.000 0.00 0.00 38.06 3.01
2377 2578 7.890127 AGTTTATCATCCATCTTCCACAAAAGA 59.110 33.333 0.00 0.00 39.49 2.52
2378 2579 8.059798 AGTTTATCATCCATCTTCCACAAAAG 57.940 34.615 0.00 0.00 0.00 2.27
2379 2580 7.890127 AGAGTTTATCATCCATCTTCCACAAAA 59.110 33.333 0.00 0.00 0.00 2.44
2380 2581 7.405292 AGAGTTTATCATCCATCTTCCACAAA 58.595 34.615 0.00 0.00 0.00 2.83
2381 2582 6.962182 AGAGTTTATCATCCATCTTCCACAA 58.038 36.000 0.00 0.00 0.00 3.33
2382 2583 6.385176 AGAGAGTTTATCATCCATCTTCCACA 59.615 38.462 0.00 0.00 0.00 4.17
2383 2584 6.825610 AGAGAGTTTATCATCCATCTTCCAC 58.174 40.000 0.00 0.00 0.00 4.02
2384 2585 6.042552 GGAGAGAGTTTATCATCCATCTTCCA 59.957 42.308 0.00 0.00 36.52 3.53
2385 2586 6.463360 GGAGAGAGTTTATCATCCATCTTCC 58.537 44.000 0.00 0.00 36.52 3.46
2386 2587 6.269769 AGGGAGAGAGTTTATCATCCATCTTC 59.730 42.308 0.00 0.00 37.65 2.87
2387 2588 6.149616 AGGGAGAGAGTTTATCATCCATCTT 58.850 40.000 0.00 0.00 37.65 2.40
2388 2589 5.725490 AGGGAGAGAGTTTATCATCCATCT 58.275 41.667 0.00 0.00 37.65 2.90
2389 2590 5.779771 AGAGGGAGAGAGTTTATCATCCATC 59.220 44.000 0.00 0.00 42.61 3.51
2390 2591 5.725490 AGAGGGAGAGAGTTTATCATCCAT 58.275 41.667 0.00 0.00 37.65 3.41
2391 2592 5.103301 AGAGAGGGAGAGAGTTTATCATCCA 60.103 44.000 0.00 0.00 37.65 3.41
2392 2593 5.393866 AGAGAGGGAGAGAGTTTATCATCC 58.606 45.833 0.00 0.00 36.02 3.51
2393 2594 6.976934 AAGAGAGGGAGAGAGTTTATCATC 57.023 41.667 0.00 0.00 0.00 2.92
2394 2595 9.445973 AATTAAGAGAGGGAGAGAGTTTATCAT 57.554 33.333 0.00 0.00 0.00 2.45
2395 2596 8.846423 AATTAAGAGAGGGAGAGAGTTTATCA 57.154 34.615 0.00 0.00 0.00 2.15
2402 2603 9.554395 GGAAAATAAATTAAGAGAGGGAGAGAG 57.446 37.037 0.00 0.00 0.00 3.20
2403 2604 8.495260 GGGAAAATAAATTAAGAGAGGGAGAGA 58.505 37.037 0.00 0.00 0.00 3.10
2404 2605 7.442666 CGGGAAAATAAATTAAGAGAGGGAGAG 59.557 40.741 0.00 0.00 0.00 3.20
2405 2606 7.092578 ACGGGAAAATAAATTAAGAGAGGGAGA 60.093 37.037 0.00 0.00 0.00 3.71
2406 2607 7.012421 CACGGGAAAATAAATTAAGAGAGGGAG 59.988 40.741 0.00 0.00 0.00 4.30
2407 2608 6.826741 CACGGGAAAATAAATTAAGAGAGGGA 59.173 38.462 0.00 0.00 0.00 4.20
2408 2609 6.826741 TCACGGGAAAATAAATTAAGAGAGGG 59.173 38.462 0.00 0.00 0.00 4.30
2409 2610 7.859325 TCACGGGAAAATAAATTAAGAGAGG 57.141 36.000 0.00 0.00 0.00 3.69
2410 2611 9.722056 CAATCACGGGAAAATAAATTAAGAGAG 57.278 33.333 0.00 0.00 0.00 3.20
2411 2612 9.456147 TCAATCACGGGAAAATAAATTAAGAGA 57.544 29.630 0.00 0.00 0.00 3.10
2414 2615 8.755018 GCATCAATCACGGGAAAATAAATTAAG 58.245 33.333 0.00 0.00 0.00 1.85
2415 2616 8.253810 TGCATCAATCACGGGAAAATAAATTAA 58.746 29.630 0.00 0.00 0.00 1.40
2416 2617 7.776107 TGCATCAATCACGGGAAAATAAATTA 58.224 30.769 0.00 0.00 0.00 1.40
2417 2618 6.638610 TGCATCAATCACGGGAAAATAAATT 58.361 32.000 0.00 0.00 0.00 1.82
2418 2619 6.219417 TGCATCAATCACGGGAAAATAAAT 57.781 33.333 0.00 0.00 0.00 1.40
2419 2620 5.651387 TGCATCAATCACGGGAAAATAAA 57.349 34.783 0.00 0.00 0.00 1.40
2420 2621 5.651387 TTGCATCAATCACGGGAAAATAA 57.349 34.783 0.00 0.00 0.00 1.40
2421 2622 5.850557 ATTGCATCAATCACGGGAAAATA 57.149 34.783 0.00 0.00 26.27 1.40
2422 2623 4.741321 ATTGCATCAATCACGGGAAAAT 57.259 36.364 0.00 0.00 26.27 1.82
2423 2624 4.244066 CAATTGCATCAATCACGGGAAAA 58.756 39.130 0.00 0.00 32.43 2.29
2424 2625 3.257873 ACAATTGCATCAATCACGGGAAA 59.742 39.130 5.05 0.00 32.43 3.13
2425 2626 2.824936 ACAATTGCATCAATCACGGGAA 59.175 40.909 5.05 0.00 32.43 3.97
2426 2627 2.423185 GACAATTGCATCAATCACGGGA 59.577 45.455 5.05 0.00 32.43 5.14
2427 2628 2.424601 AGACAATTGCATCAATCACGGG 59.575 45.455 5.05 0.00 32.43 5.28
2428 2629 3.376234 AGAGACAATTGCATCAATCACGG 59.624 43.478 5.05 0.00 32.43 4.94
2429 2630 4.142752 ACAGAGACAATTGCATCAATCACG 60.143 41.667 5.05 0.00 32.43 4.35
2430 2631 5.093457 CACAGAGACAATTGCATCAATCAC 58.907 41.667 5.05 0.00 32.43 3.06
2431 2632 5.005094 TCACAGAGACAATTGCATCAATCA 58.995 37.500 5.05 0.00 32.43 2.57
2432 2633 5.556355 TCACAGAGACAATTGCATCAATC 57.444 39.130 5.05 0.00 32.43 2.67
2433 2634 5.650703 TCATCACAGAGACAATTGCATCAAT 59.349 36.000 5.05 0.00 35.39 2.57
2434 2635 5.005094 TCATCACAGAGACAATTGCATCAA 58.995 37.500 5.05 0.00 0.00 2.57
2435 2636 4.581868 TCATCACAGAGACAATTGCATCA 58.418 39.130 5.05 0.00 0.00 3.07
2436 2637 4.874396 TCTCATCACAGAGACAATTGCATC 59.126 41.667 5.05 3.81 39.62 3.91
2437 2638 4.840271 TCTCATCACAGAGACAATTGCAT 58.160 39.130 5.05 0.00 39.62 3.96
2438 2639 4.276058 TCTCATCACAGAGACAATTGCA 57.724 40.909 5.05 0.00 39.62 4.08
2439 2640 5.814764 AATCTCATCACAGAGACAATTGC 57.185 39.130 5.05 0.00 46.58 3.56
2537 2738 4.145876 TGTGAAACGAGAAATGTGCATC 57.854 40.909 0.00 0.00 42.39 3.91
2538 2739 4.216042 TCATGTGAAACGAGAAATGTGCAT 59.784 37.500 0.00 0.00 42.39 3.96
2539 2740 3.563390 TCATGTGAAACGAGAAATGTGCA 59.437 39.130 0.00 0.00 42.39 4.57
2540 2741 4.145876 TCATGTGAAACGAGAAATGTGC 57.854 40.909 0.00 0.00 42.39 4.57
2541 2742 4.556135 GCATCATGTGAAACGAGAAATGTG 59.444 41.667 0.00 0.00 42.39 3.21
2542 2743 4.216042 TGCATCATGTGAAACGAGAAATGT 59.784 37.500 0.00 0.00 42.39 2.71
2543 2744 4.556135 GTGCATCATGTGAAACGAGAAATG 59.444 41.667 0.00 0.00 42.39 2.32
2544 2745 4.216042 TGTGCATCATGTGAAACGAGAAAT 59.784 37.500 0.00 0.00 42.39 2.17
2545 2746 3.563390 TGTGCATCATGTGAAACGAGAAA 59.437 39.130 0.00 0.00 42.39 2.52
2546 2747 3.137533 TGTGCATCATGTGAAACGAGAA 58.862 40.909 0.00 0.00 42.39 2.87
2547 2748 2.765122 TGTGCATCATGTGAAACGAGA 58.235 42.857 0.00 0.00 42.39 4.04
2548 2749 3.752412 ATGTGCATCATGTGAAACGAG 57.248 42.857 0.00 0.00 42.39 4.18
2549 2750 4.216042 AGAAATGTGCATCATGTGAAACGA 59.784 37.500 0.00 0.00 42.39 3.85
2550 2751 4.478699 AGAAATGTGCATCATGTGAAACG 58.521 39.130 0.00 0.00 42.39 3.60
2551 2752 4.556135 CGAGAAATGTGCATCATGTGAAAC 59.444 41.667 0.00 0.00 36.81 2.78
2552 2753 4.216042 ACGAGAAATGTGCATCATGTGAAA 59.784 37.500 0.00 0.00 36.81 2.69
2553 2754 3.752747 ACGAGAAATGTGCATCATGTGAA 59.247 39.130 0.00 0.00 36.81 3.18
2554 2755 3.337358 ACGAGAAATGTGCATCATGTGA 58.663 40.909 0.00 0.00 36.81 3.58
2555 2756 3.752412 ACGAGAAATGTGCATCATGTG 57.248 42.857 0.00 0.00 36.81 3.21
2556 2757 4.216042 TGAAACGAGAAATGTGCATCATGT 59.784 37.500 0.00 0.00 36.81 3.21
2557 2758 4.556135 GTGAAACGAGAAATGTGCATCATG 59.444 41.667 0.00 0.00 36.81 3.07
2558 2759 4.216042 TGTGAAACGAGAAATGTGCATCAT 59.784 37.500 0.00 0.00 42.39 2.45
2559 2760 3.563390 TGTGAAACGAGAAATGTGCATCA 59.437 39.130 0.00 0.00 42.39 3.07
2560 2761 4.145876 TGTGAAACGAGAAATGTGCATC 57.854 40.909 0.00 0.00 42.39 3.91
2561 2762 4.216042 TCATGTGAAACGAGAAATGTGCAT 59.784 37.500 0.00 0.00 42.39 3.96
2562 2763 3.563390 TCATGTGAAACGAGAAATGTGCA 59.437 39.130 0.00 0.00 42.39 4.57
2563 2764 4.145876 TCATGTGAAACGAGAAATGTGC 57.854 40.909 0.00 0.00 42.39 4.57
2564 2765 4.556135 GCATCATGTGAAACGAGAAATGTG 59.444 41.667 0.00 0.00 42.39 3.21
2565 2766 4.216042 TGCATCATGTGAAACGAGAAATGT 59.784 37.500 0.00 0.00 42.39 2.71
2566 2767 4.556135 GTGCATCATGTGAAACGAGAAATG 59.444 41.667 0.00 0.00 42.39 2.32
2567 2768 4.216042 TGTGCATCATGTGAAACGAGAAAT 59.784 37.500 0.00 0.00 42.39 2.17
2568 2769 3.563390 TGTGCATCATGTGAAACGAGAAA 59.437 39.130 0.00 0.00 42.39 2.52
2569 2770 3.137533 TGTGCATCATGTGAAACGAGAA 58.862 40.909 0.00 0.00 42.39 2.87
2570 2771 2.765122 TGTGCATCATGTGAAACGAGA 58.235 42.857 0.00 0.00 42.39 4.04
2571 2772 3.752412 ATGTGCATCATGTGAAACGAG 57.248 42.857 0.00 0.00 42.39 4.18
2572 2773 4.216042 AGAAATGTGCATCATGTGAAACGA 59.784 37.500 0.00 0.00 42.39 3.85
2573 2774 4.322539 CAGAAATGTGCATCATGTGAAACG 59.677 41.667 0.00 0.00 42.39 3.60
2574 2775 5.344128 GTCAGAAATGTGCATCATGTGAAAC 59.656 40.000 0.00 0.00 36.81 2.78
2575 2776 5.463286 GTCAGAAATGTGCATCATGTGAAA 58.537 37.500 0.00 0.00 36.81 2.69
2576 2777 4.378666 CGTCAGAAATGTGCATCATGTGAA 60.379 41.667 0.00 0.00 36.81 3.18
2577 2778 3.125658 CGTCAGAAATGTGCATCATGTGA 59.874 43.478 0.00 0.00 36.81 3.58
2578 2779 3.422655 CGTCAGAAATGTGCATCATGTG 58.577 45.455 0.00 0.00 36.81 3.21
2579 2780 2.421073 CCGTCAGAAATGTGCATCATGT 59.579 45.455 0.00 0.00 36.81 3.21
2580 2781 2.223409 CCCGTCAGAAATGTGCATCATG 60.223 50.000 0.00 0.00 36.81 3.07
2581 2782 2.019249 CCCGTCAGAAATGTGCATCAT 58.981 47.619 0.00 0.00 38.57 2.45
2582 2783 1.271325 ACCCGTCAGAAATGTGCATCA 60.271 47.619 0.00 0.00 0.00 3.07
2653 2854 0.608640 AGTTTCTCTCGACGCCCAAT 59.391 50.000 0.00 0.00 0.00 3.16
2862 3094 1.073897 GCTTGGCAGTGAGGAAGGT 59.926 57.895 0.00 0.00 0.00 3.50
2913 3145 4.057428 GCGACAGCGGAGACCACT 62.057 66.667 0.00 0.00 38.16 4.00
2986 3220 1.541147 CCACGTGAACAATGAATGCCT 59.459 47.619 19.30 0.00 0.00 4.75
3185 3419 4.469657 ACACAATGGAAACCTACATGTGT 58.530 39.130 9.11 3.04 36.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.