Multiple sequence alignment - TraesCS3D01G239000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G239000 chr3D 100.000 3881 0 0 1 3881 330485509 330489389 0.000000e+00 7167.0
1 TraesCS3D01G239000 chr3D 86.643 277 34 3 1 275 448535872 448536147 1.750000e-78 303.0
2 TraesCS3D01G239000 chr3D 85.106 282 29 8 1 275 176891174 176890899 3.820000e-70 276.0
3 TraesCS3D01G239000 chr3D 84.561 285 33 4 1 275 555427175 555426892 4.940000e-69 272.0
4 TraesCS3D01G239000 chr3B 93.539 1068 54 9 686 1748 428195924 428196981 0.000000e+00 1576.0
5 TraesCS3D01G239000 chr3B 95.958 767 26 3 2198 2962 428198342 428199105 0.000000e+00 1240.0
6 TraesCS3D01G239000 chr3B 89.270 466 16 7 1751 2203 428197015 428197459 1.580000e-153 553.0
7 TraesCS3D01G239000 chr3B 93.785 354 20 2 337 689 428195517 428195869 7.380000e-147 531.0
8 TraesCS3D01G239000 chr3B 74.440 536 92 28 3276 3773 139735419 139735947 5.120000e-44 189.0
9 TraesCS3D01G239000 chr3B 80.172 116 20 3 3665 3778 810257977 810258091 2.480000e-12 84.2
10 TraesCS3D01G239000 chr3A 93.539 1006 37 11 1972 2963 446265777 446266768 0.000000e+00 1472.0
11 TraesCS3D01G239000 chr3A 87.269 974 63 22 686 1644 446264471 446265398 0.000000e+00 1055.0
12 TraesCS3D01G239000 chr3A 93.820 356 18 4 337 690 446264079 446264432 2.050000e-147 532.0
13 TraesCS3D01G239000 chr3A 83.908 87 11 3 3677 3760 685813673 685813759 3.210000e-11 80.5
14 TraesCS3D01G239000 chr1B 76.054 664 116 26 3052 3677 650445568 650446226 4.870000e-79 305.0
15 TraesCS3D01G239000 chr7A 76.425 649 102 24 3158 3778 526618878 526618253 1.750000e-78 303.0
16 TraesCS3D01G239000 chr6B 86.282 277 30 7 1 275 696508983 696509253 1.050000e-75 294.0
17 TraesCS3D01G239000 chr1A 87.023 262 27 3 20 275 585693117 585693377 4.910000e-74 289.0
18 TraesCS3D01G239000 chr1A 82.667 150 14 4 3051 3189 191891791 191891643 5.270000e-24 122.0
19 TraesCS3D01G239000 chr2A 85.921 277 26 7 1 275 775930604 775930869 2.280000e-72 283.0
20 TraesCS3D01G239000 chr2A 77.056 231 34 10 3022 3234 774805047 774804818 8.810000e-22 115.0
21 TraesCS3D01G239000 chr2D 82.336 351 32 17 1 327 572212485 572212829 1.060000e-70 278.0
22 TraesCS3D01G239000 chr1D 84.752 282 35 4 1 275 202405399 202405119 3.820000e-70 276.0
23 TraesCS3D01G239000 chr1D 84.783 276 40 2 1 275 467052576 467052850 3.820000e-70 276.0
24 TraesCS3D01G239000 chr2B 72.697 890 166 53 3022 3850 786137257 786138130 3.900000e-55 226.0
25 TraesCS3D01G239000 chr2B 71.916 762 132 46 3026 3738 111426050 111426778 3.120000e-31 147.0
26 TraesCS3D01G239000 chr2B 77.990 209 26 12 2958 3147 134773534 134773327 3.170000e-21 113.0
27 TraesCS3D01G239000 chr6D 74.000 600 120 19 3286 3856 29837833 29837241 1.090000e-50 211.0
28 TraesCS3D01G239000 chr7B 73.083 613 98 30 3022 3603 166964442 166965018 5.190000e-34 156.0
29 TraesCS3D01G239000 chr7B 78.138 247 32 16 3044 3276 656507144 656506906 1.880000e-28 137.0
30 TraesCS3D01G239000 chr7D 80.000 180 24 4 3026 3194 203333064 203333242 5.270000e-24 122.0
31 TraesCS3D01G239000 chr4A 84.298 121 15 4 3662 3778 684115442 684115562 8.810000e-22 115.0
32 TraesCS3D01G239000 chr4A 78.075 187 35 6 3493 3675 742530837 742531021 3.170000e-21 113.0
33 TraesCS3D01G239000 chr4B 90.741 54 3 2 274 326 406686332 406686280 1.930000e-08 71.3
34 TraesCS3D01G239000 chr4D 83.099 71 7 4 3684 3750 446647375 446647306 4.190000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G239000 chr3D 330485509 330489389 3880 False 7167.000000 7167 100.000000 1 3881 1 chr3D.!!$F1 3880
1 TraesCS3D01G239000 chr3B 428195517 428199105 3588 False 975.000000 1576 93.138000 337 2962 4 chr3B.!!$F3 2625
2 TraesCS3D01G239000 chr3A 446264079 446266768 2689 False 1019.666667 1472 91.542667 337 2963 3 chr3A.!!$F2 2626
3 TraesCS3D01G239000 chr1B 650445568 650446226 658 False 305.000000 305 76.054000 3052 3677 1 chr1B.!!$F1 625
4 TraesCS3D01G239000 chr7A 526618253 526618878 625 True 303.000000 303 76.425000 3158 3778 1 chr7A.!!$R1 620
5 TraesCS3D01G239000 chr2B 786137257 786138130 873 False 226.000000 226 72.697000 3022 3850 1 chr2B.!!$F2 828
6 TraesCS3D01G239000 chr6D 29837241 29837833 592 True 211.000000 211 74.000000 3286 3856 1 chr6D.!!$R1 570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
567 568 0.035458 CTTGGCCGAGTCTTGGAGTT 59.965 55.0 12.40 0.0 0.0 3.01 F
1222 1284 0.818445 CATCCAGGCTGCCATCTCAC 60.818 60.0 22.65 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1586 1655 0.614979 AGGCGGGCTCTTGTCTCTTA 60.615 55.000 0.00 0.0 0.00 2.1 R
2919 4144 1.342819 CATAGACCAGCCCTAGACTGC 59.657 57.143 7.11 0.0 33.65 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.730420 AATTAATGATTCGTTTATTTTCCCGAG 57.270 29.630 0.00 0.00 0.00 4.63
29 30 6.753107 AATGATTCGTTTATTTTCCCGAGT 57.247 33.333 0.00 0.00 0.00 4.18
30 31 7.852971 AATGATTCGTTTATTTTCCCGAGTA 57.147 32.000 0.00 0.00 0.00 2.59
31 32 6.897259 TGATTCGTTTATTTTCCCGAGTAG 57.103 37.500 0.00 0.00 0.00 2.57
32 33 5.292589 TGATTCGTTTATTTTCCCGAGTAGC 59.707 40.000 0.00 0.00 0.00 3.58
33 34 4.191033 TCGTTTATTTTCCCGAGTAGCA 57.809 40.909 0.00 0.00 0.00 3.49
34 35 4.567971 TCGTTTATTTTCCCGAGTAGCAA 58.432 39.130 0.00 0.00 0.00 3.91
35 36 4.996122 TCGTTTATTTTCCCGAGTAGCAAA 59.004 37.500 0.00 0.00 0.00 3.68
36 37 5.469421 TCGTTTATTTTCCCGAGTAGCAAAA 59.531 36.000 0.00 0.00 0.00 2.44
37 38 6.017275 TCGTTTATTTTCCCGAGTAGCAAAAA 60.017 34.615 0.00 0.00 0.00 1.94
38 39 6.804783 CGTTTATTTTCCCGAGTAGCAAAAAT 59.195 34.615 0.00 0.00 34.76 1.82
39 40 7.964011 CGTTTATTTTCCCGAGTAGCAAAAATA 59.036 33.333 0.00 0.00 33.12 1.40
40 41 9.797556 GTTTATTTTCCCGAGTAGCAAAAATAT 57.202 29.630 0.00 0.00 33.92 1.28
41 42 9.796120 TTTATTTTCCCGAGTAGCAAAAATATG 57.204 29.630 0.00 0.00 33.92 1.78
42 43 5.828299 TTTCCCGAGTAGCAAAAATATGG 57.172 39.130 0.00 0.00 0.00 2.74
43 44 4.764050 TCCCGAGTAGCAAAAATATGGA 57.236 40.909 0.00 0.00 0.00 3.41
44 45 4.448210 TCCCGAGTAGCAAAAATATGGAC 58.552 43.478 0.00 0.00 0.00 4.02
45 46 4.080807 TCCCGAGTAGCAAAAATATGGACA 60.081 41.667 0.00 0.00 0.00 4.02
46 47 4.638421 CCCGAGTAGCAAAAATATGGACAA 59.362 41.667 0.00 0.00 0.00 3.18
47 48 5.299279 CCCGAGTAGCAAAAATATGGACAAT 59.701 40.000 0.00 0.00 0.00 2.71
48 49 6.201517 CCGAGTAGCAAAAATATGGACAATG 58.798 40.000 0.00 0.00 0.00 2.82
49 50 6.183360 CCGAGTAGCAAAAATATGGACAATGT 60.183 38.462 0.00 0.00 0.00 2.71
50 51 6.688385 CGAGTAGCAAAAATATGGACAATGTG 59.312 38.462 0.00 0.00 0.00 3.21
51 52 7.466746 AGTAGCAAAAATATGGACAATGTGT 57.533 32.000 0.00 0.00 0.00 3.72
52 53 8.574251 AGTAGCAAAAATATGGACAATGTGTA 57.426 30.769 0.00 0.00 0.00 2.90
53 54 9.189156 AGTAGCAAAAATATGGACAATGTGTAT 57.811 29.630 0.00 0.00 0.00 2.29
56 57 8.137437 AGCAAAAATATGGACAATGTGTATAGC 58.863 33.333 0.00 0.00 0.00 2.97
57 58 8.137437 GCAAAAATATGGACAATGTGTATAGCT 58.863 33.333 0.00 0.00 0.00 3.32
58 59 9.669353 CAAAAATATGGACAATGTGTATAGCTC 57.331 33.333 0.00 0.00 0.00 4.09
59 60 9.632638 AAAAATATGGACAATGTGTATAGCTCT 57.367 29.630 0.00 0.00 0.00 4.09
60 61 8.613060 AAATATGGACAATGTGTATAGCTCTG 57.387 34.615 0.00 0.00 0.00 3.35
61 62 5.620738 ATGGACAATGTGTATAGCTCTGT 57.379 39.130 0.00 0.00 0.00 3.41
62 63 5.011090 TGGACAATGTGTATAGCTCTGTC 57.989 43.478 0.00 0.00 0.00 3.51
63 64 4.372656 GGACAATGTGTATAGCTCTGTCC 58.627 47.826 0.00 2.82 43.18 4.02
64 65 4.100189 GGACAATGTGTATAGCTCTGTCCT 59.900 45.833 10.37 0.00 45.13 3.85
65 66 5.269505 ACAATGTGTATAGCTCTGTCCTC 57.730 43.478 0.00 0.00 0.00 3.71
66 67 4.202060 ACAATGTGTATAGCTCTGTCCTCG 60.202 45.833 0.00 0.00 0.00 4.63
67 68 2.298610 TGTGTATAGCTCTGTCCTCGG 58.701 52.381 0.00 0.00 0.00 4.63
68 69 1.001158 GTGTATAGCTCTGTCCTCGGC 60.001 57.143 0.00 0.00 0.00 5.54
69 70 1.133761 TGTATAGCTCTGTCCTCGGCT 60.134 52.381 0.00 0.00 38.62 5.52
70 71 1.538075 GTATAGCTCTGTCCTCGGCTC 59.462 57.143 0.00 0.00 36.40 4.70
71 72 0.106469 ATAGCTCTGTCCTCGGCTCA 60.106 55.000 0.00 0.00 36.40 4.26
72 73 0.323451 TAGCTCTGTCCTCGGCTCAA 60.323 55.000 0.00 0.00 36.40 3.02
73 74 0.975040 AGCTCTGTCCTCGGCTCAAT 60.975 55.000 0.00 0.00 0.00 2.57
74 75 0.529555 GCTCTGTCCTCGGCTCAATC 60.530 60.000 0.00 0.00 0.00 2.67
75 76 0.103937 CTCTGTCCTCGGCTCAATCC 59.896 60.000 0.00 0.00 0.00 3.01
76 77 1.144936 CTGTCCTCGGCTCAATCCC 59.855 63.158 0.00 0.00 0.00 3.85
77 78 2.107141 GTCCTCGGCTCAATCCCG 59.893 66.667 0.00 0.00 46.88 5.14
78 79 3.849951 TCCTCGGCTCAATCCCGC 61.850 66.667 0.00 0.00 45.19 6.13
79 80 4.161295 CCTCGGCTCAATCCCGCA 62.161 66.667 0.00 0.00 45.19 5.69
80 81 2.125147 CTCGGCTCAATCCCGCAA 60.125 61.111 0.00 0.00 45.19 4.85
81 82 2.435938 TCGGCTCAATCCCGCAAC 60.436 61.111 0.00 0.00 45.19 4.17
82 83 3.508840 CGGCTCAATCCCGCAACC 61.509 66.667 0.00 0.00 39.22 3.77
83 84 3.140814 GGCTCAATCCCGCAACCC 61.141 66.667 0.00 0.00 0.00 4.11
84 85 3.508840 GCTCAATCCCGCAACCCG 61.509 66.667 0.00 0.00 0.00 5.28
85 86 3.508840 CTCAATCCCGCAACCCGC 61.509 66.667 0.00 0.00 35.03 6.13
108 109 4.919987 GGCGCGGCTCGTAGTACC 62.920 72.222 27.05 0.00 41.07 3.34
110 111 3.566853 CGCGGCTCGTAGTACCGA 61.567 66.667 4.61 0.00 46.50 4.69
116 117 3.489731 TCGTAGTACCGAGGCGTG 58.510 61.111 0.00 0.00 32.18 5.34
117 118 2.108514 TCGTAGTACCGAGGCGTGG 61.109 63.158 0.00 0.00 32.18 4.94
118 119 2.103736 GTAGTACCGAGGCGTGGC 59.896 66.667 0.00 0.00 0.00 5.01
119 120 3.511595 TAGTACCGAGGCGTGGCG 61.512 66.667 0.00 0.00 0.00 5.69
120 121 3.974835 TAGTACCGAGGCGTGGCGA 62.975 63.158 0.00 0.00 0.00 5.54
121 122 4.849329 GTACCGAGGCGTGGCGAG 62.849 72.222 0.00 0.00 0.00 5.03
136 137 3.141488 GAGGCGAGCGAGGAGGAA 61.141 66.667 0.00 0.00 0.00 3.36
137 138 3.132481 GAGGCGAGCGAGGAGGAAG 62.132 68.421 0.00 0.00 0.00 3.46
138 139 3.141488 GGCGAGCGAGGAGGAAGA 61.141 66.667 0.00 0.00 0.00 2.87
139 140 2.711922 GGCGAGCGAGGAGGAAGAA 61.712 63.158 0.00 0.00 0.00 2.52
140 141 1.517475 GCGAGCGAGGAGGAAGAAC 60.517 63.158 0.00 0.00 0.00 3.01
141 142 1.226435 CGAGCGAGGAGGAAGAACG 60.226 63.158 0.00 0.00 0.00 3.95
143 144 2.881352 GCGAGGAGGAAGAACGCG 60.881 66.667 3.53 3.53 39.90 6.01
144 145 2.567049 CGAGGAGGAAGAACGCGT 59.433 61.111 5.58 5.58 0.00 6.01
145 146 1.801913 CGAGGAGGAAGAACGCGTG 60.802 63.158 14.98 0.00 0.00 5.34
146 147 1.289380 GAGGAGGAAGAACGCGTGT 59.711 57.895 14.98 2.40 0.00 4.49
147 148 1.006102 AGGAGGAAGAACGCGTGTG 60.006 57.895 14.98 0.00 0.00 3.82
148 149 1.300697 GGAGGAAGAACGCGTGTGT 60.301 57.895 14.98 0.00 0.00 3.72
149 150 0.038892 GGAGGAAGAACGCGTGTGTA 60.039 55.000 14.98 0.00 0.00 2.90
150 151 1.337821 GAGGAAGAACGCGTGTGTAG 58.662 55.000 14.98 0.00 0.00 2.74
151 152 0.038526 AGGAAGAACGCGTGTGTAGG 60.039 55.000 14.98 0.00 0.00 3.18
152 153 0.319297 GGAAGAACGCGTGTGTAGGT 60.319 55.000 14.98 0.00 0.00 3.08
153 154 1.058404 GAAGAACGCGTGTGTAGGTC 58.942 55.000 14.98 4.26 0.00 3.85
154 155 0.672342 AAGAACGCGTGTGTAGGTCT 59.328 50.000 14.98 7.09 32.60 3.85
155 156 0.240411 AGAACGCGTGTGTAGGTCTC 59.760 55.000 14.98 2.48 0.00 3.36
156 157 0.731855 GAACGCGTGTGTAGGTCTCC 60.732 60.000 14.98 0.00 0.00 3.71
157 158 1.177256 AACGCGTGTGTAGGTCTCCT 61.177 55.000 14.98 0.00 37.71 3.69
158 159 1.136984 CGCGTGTGTAGGTCTCCTC 59.863 63.158 0.00 0.00 34.61 3.71
159 160 1.306642 CGCGTGTGTAGGTCTCCTCT 61.307 60.000 0.00 0.00 34.61 3.69
160 161 0.889306 GCGTGTGTAGGTCTCCTCTT 59.111 55.000 0.00 0.00 34.61 2.85
161 162 1.135344 GCGTGTGTAGGTCTCCTCTTC 60.135 57.143 0.00 0.00 34.61 2.87
162 163 2.438411 CGTGTGTAGGTCTCCTCTTCT 58.562 52.381 0.00 0.00 34.61 2.85
163 164 2.420722 CGTGTGTAGGTCTCCTCTTCTC 59.579 54.545 0.00 0.00 34.61 2.87
164 165 3.422796 GTGTGTAGGTCTCCTCTTCTCA 58.577 50.000 0.00 0.00 34.61 3.27
165 166 3.827302 GTGTGTAGGTCTCCTCTTCTCAA 59.173 47.826 0.00 0.00 34.61 3.02
166 167 4.464597 GTGTGTAGGTCTCCTCTTCTCAAT 59.535 45.833 0.00 0.00 34.61 2.57
167 168 4.464244 TGTGTAGGTCTCCTCTTCTCAATG 59.536 45.833 0.00 0.00 34.61 2.82
168 169 4.464597 GTGTAGGTCTCCTCTTCTCAATGT 59.535 45.833 0.00 0.00 34.61 2.71
169 170 4.707448 TGTAGGTCTCCTCTTCTCAATGTC 59.293 45.833 0.00 0.00 34.61 3.06
170 171 3.784178 AGGTCTCCTCTTCTCAATGTCA 58.216 45.455 0.00 0.00 0.00 3.58
171 172 4.360889 AGGTCTCCTCTTCTCAATGTCAT 58.639 43.478 0.00 0.00 0.00 3.06
172 173 5.523588 AGGTCTCCTCTTCTCAATGTCATA 58.476 41.667 0.00 0.00 0.00 2.15
173 174 5.362430 AGGTCTCCTCTTCTCAATGTCATAC 59.638 44.000 0.00 0.00 0.00 2.39
174 175 5.127845 GGTCTCCTCTTCTCAATGTCATACA 59.872 44.000 0.00 0.00 0.00 2.29
175 176 6.351371 GGTCTCCTCTTCTCAATGTCATACAA 60.351 42.308 0.00 0.00 0.00 2.41
176 177 6.756074 GTCTCCTCTTCTCAATGTCATACAAG 59.244 42.308 0.00 0.00 0.00 3.16
177 178 6.438741 TCTCCTCTTCTCAATGTCATACAAGT 59.561 38.462 0.00 0.00 0.00 3.16
178 179 6.401394 TCCTCTTCTCAATGTCATACAAGTG 58.599 40.000 0.00 0.00 0.00 3.16
179 180 6.211384 TCCTCTTCTCAATGTCATACAAGTGA 59.789 38.462 0.00 0.00 0.00 3.41
180 181 7.046652 CCTCTTCTCAATGTCATACAAGTGAT 58.953 38.462 0.00 0.00 29.54 3.06
181 182 8.200120 CCTCTTCTCAATGTCATACAAGTGATA 58.800 37.037 0.00 0.00 29.54 2.15
182 183 9.247126 CTCTTCTCAATGTCATACAAGTGATAG 57.753 37.037 0.00 0.00 29.54 2.08
183 184 8.971073 TCTTCTCAATGTCATACAAGTGATAGA 58.029 33.333 0.00 0.00 29.54 1.98
184 185 9.591792 CTTCTCAATGTCATACAAGTGATAGAA 57.408 33.333 0.00 0.00 29.54 2.10
185 186 9.591792 TTCTCAATGTCATACAAGTGATAGAAG 57.408 33.333 0.00 0.00 29.54 2.85
186 187 8.971073 TCTCAATGTCATACAAGTGATAGAAGA 58.029 33.333 0.00 0.00 29.54 2.87
187 188 9.247126 CTCAATGTCATACAAGTGATAGAAGAG 57.753 37.037 0.00 0.00 29.54 2.85
188 189 7.708322 TCAATGTCATACAAGTGATAGAAGAGC 59.292 37.037 0.00 0.00 0.00 4.09
189 190 6.782082 TGTCATACAAGTGATAGAAGAGCT 57.218 37.500 0.00 0.00 0.00 4.09
190 191 7.175347 TGTCATACAAGTGATAGAAGAGCTT 57.825 36.000 0.00 0.00 0.00 3.74
191 192 8.293699 TGTCATACAAGTGATAGAAGAGCTTA 57.706 34.615 0.00 0.00 0.00 3.09
192 193 8.191446 TGTCATACAAGTGATAGAAGAGCTTAC 58.809 37.037 0.00 0.00 0.00 2.34
193 194 8.410141 GTCATACAAGTGATAGAAGAGCTTACT 58.590 37.037 0.00 0.00 0.00 2.24
194 195 8.972127 TCATACAAGTGATAGAAGAGCTTACTT 58.028 33.333 0.00 0.00 0.00 2.24
195 196 9.593134 CATACAAGTGATAGAAGAGCTTACTTT 57.407 33.333 0.00 0.00 0.00 2.66
217 218 9.289782 ACTTTATAAAGAAATGCAAGTCTCACT 57.710 29.630 27.92 0.47 39.31 3.41
222 223 7.573968 AAAGAAATGCAAGTCTCACTTAACT 57.426 32.000 3.20 0.00 36.03 2.24
223 224 7.573968 AAGAAATGCAAGTCTCACTTAACTT 57.426 32.000 3.20 0.00 36.03 2.66
224 225 7.573968 AGAAATGCAAGTCTCACTTAACTTT 57.426 32.000 0.00 0.00 36.03 2.66
225 226 8.000780 AGAAATGCAAGTCTCACTTAACTTTT 57.999 30.769 0.00 0.00 36.03 2.27
226 227 7.917505 AGAAATGCAAGTCTCACTTAACTTTTG 59.082 33.333 0.00 0.00 36.03 2.44
227 228 5.499139 TGCAAGTCTCACTTAACTTTTGG 57.501 39.130 0.00 0.00 36.03 3.28
228 229 5.189928 TGCAAGTCTCACTTAACTTTTGGA 58.810 37.500 0.00 0.00 36.03 3.53
229 230 5.650266 TGCAAGTCTCACTTAACTTTTGGAA 59.350 36.000 0.00 0.00 36.03 3.53
230 231 6.321181 TGCAAGTCTCACTTAACTTTTGGAAT 59.679 34.615 0.00 0.00 36.03 3.01
231 232 6.638468 GCAAGTCTCACTTAACTTTTGGAATG 59.362 38.462 0.00 0.00 36.03 2.67
232 233 7.468631 GCAAGTCTCACTTAACTTTTGGAATGA 60.469 37.037 0.00 0.00 36.03 2.57
233 234 7.736447 AGTCTCACTTAACTTTTGGAATGAG 57.264 36.000 0.00 0.00 34.87 2.90
234 235 7.509546 AGTCTCACTTAACTTTTGGAATGAGA 58.490 34.615 0.00 0.00 39.12 3.27
235 236 7.730364 TCTCACTTAACTTTTGGAATGAGAC 57.270 36.000 0.00 0.00 37.12 3.36
236 237 7.509546 TCTCACTTAACTTTTGGAATGAGACT 58.490 34.615 0.00 0.00 37.12 3.24
237 238 8.647796 TCTCACTTAACTTTTGGAATGAGACTA 58.352 33.333 0.00 0.00 37.12 2.59
238 239 9.273016 CTCACTTAACTTTTGGAATGAGACTAA 57.727 33.333 0.00 0.00 35.42 2.24
239 240 9.621629 TCACTTAACTTTTGGAATGAGACTAAA 57.378 29.630 0.00 0.00 0.00 1.85
240 241 9.665264 CACTTAACTTTTGGAATGAGACTAAAC 57.335 33.333 0.00 0.00 0.00 2.01
241 242 9.628500 ACTTAACTTTTGGAATGAGACTAAACT 57.372 29.630 0.00 0.00 0.00 2.66
246 247 9.628500 ACTTTTGGAATGAGACTAAACTTTAGT 57.372 29.630 13.09 13.09 0.00 2.24
257 258 7.626144 GACTAAACTTTAGTCTCACTCACAC 57.374 40.000 25.27 4.83 40.43 3.82
258 259 6.514063 ACTAAACTTTAGTCTCACTCACACC 58.486 40.000 8.19 0.00 0.00 4.16
259 260 5.353394 AAACTTTAGTCTCACTCACACCA 57.647 39.130 0.00 0.00 0.00 4.17
260 261 5.552870 AACTTTAGTCTCACTCACACCAT 57.447 39.130 0.00 0.00 0.00 3.55
261 262 5.552870 ACTTTAGTCTCACTCACACCATT 57.447 39.130 0.00 0.00 0.00 3.16
262 263 5.542779 ACTTTAGTCTCACTCACACCATTC 58.457 41.667 0.00 0.00 0.00 2.67
263 264 5.070446 ACTTTAGTCTCACTCACACCATTCA 59.930 40.000 0.00 0.00 0.00 2.57
264 265 5.745312 TTAGTCTCACTCACACCATTCAT 57.255 39.130 0.00 0.00 0.00 2.57
265 266 6.850752 TTAGTCTCACTCACACCATTCATA 57.149 37.500 0.00 0.00 0.00 2.15
266 267 5.946942 AGTCTCACTCACACCATTCATAT 57.053 39.130 0.00 0.00 0.00 1.78
267 268 5.668471 AGTCTCACTCACACCATTCATATG 58.332 41.667 0.00 0.00 0.00 1.78
268 269 5.188555 AGTCTCACTCACACCATTCATATGT 59.811 40.000 1.90 0.00 0.00 2.29
269 270 5.292834 GTCTCACTCACACCATTCATATGTG 59.707 44.000 1.90 0.00 44.14 3.21
270 271 5.046376 TCTCACTCACACCATTCATATGTGT 60.046 40.000 1.90 0.00 43.42 3.72
271 272 4.937015 TCACTCACACCATTCATATGTGTG 59.063 41.667 14.12 14.12 43.42 3.82
272 273 3.691118 ACTCACACCATTCATATGTGTGC 59.309 43.478 15.17 0.00 43.42 4.57
273 274 3.683802 TCACACCATTCATATGTGTGCA 58.316 40.909 15.17 4.27 43.42 4.57
274 275 4.271661 TCACACCATTCATATGTGTGCAT 58.728 39.130 15.17 0.00 43.42 3.96
275 276 4.705991 TCACACCATTCATATGTGTGCATT 59.294 37.500 15.17 0.00 43.42 3.56
276 277 5.185442 TCACACCATTCATATGTGTGCATTT 59.815 36.000 15.17 0.00 43.42 2.32
277 278 5.517411 CACACCATTCATATGTGTGCATTTC 59.483 40.000 8.82 0.00 39.11 2.17
278 279 5.185442 ACACCATTCATATGTGTGCATTTCA 59.815 36.000 1.90 0.00 36.88 2.69
279 280 5.746721 CACCATTCATATGTGTGCATTTCAG 59.253 40.000 1.90 0.00 36.58 3.02
280 281 5.653330 ACCATTCATATGTGTGCATTTCAGA 59.347 36.000 1.90 0.00 36.58 3.27
281 282 6.153170 ACCATTCATATGTGTGCATTTCAGAA 59.847 34.615 1.90 0.00 36.58 3.02
282 283 7.147794 ACCATTCATATGTGTGCATTTCAGAAT 60.148 33.333 1.90 0.00 36.58 2.40
283 284 7.709182 CCATTCATATGTGTGCATTTCAGAATT 59.291 33.333 1.90 0.00 36.58 2.17
284 285 9.093970 CATTCATATGTGTGCATTTCAGAATTT 57.906 29.630 1.90 0.00 36.58 1.82
285 286 9.661563 ATTCATATGTGTGCATTTCAGAATTTT 57.338 25.926 1.90 0.00 36.58 1.82
287 288 9.791820 TCATATGTGTGCATTTCAGAATTTTAG 57.208 29.630 1.90 0.00 36.58 1.85
288 289 9.577110 CATATGTGTGCATTTCAGAATTTTAGT 57.423 29.630 0.00 0.00 36.58 2.24
290 291 7.928908 TGTGTGCATTTCAGAATTTTAGTTC 57.071 32.000 0.00 0.00 0.00 3.01
291 292 6.636447 TGTGTGCATTTCAGAATTTTAGTTCG 59.364 34.615 0.00 0.00 33.36 3.95
292 293 6.088085 GTGTGCATTTCAGAATTTTAGTTCGG 59.912 38.462 0.00 0.00 33.36 4.30
293 294 5.060940 GTGCATTTCAGAATTTTAGTTCGGC 59.939 40.000 0.00 0.00 33.36 5.54
294 295 5.048083 TGCATTTCAGAATTTTAGTTCGGCT 60.048 36.000 0.00 0.00 33.36 5.52
295 296 5.863935 GCATTTCAGAATTTTAGTTCGGCTT 59.136 36.000 0.00 0.00 33.36 4.35
296 297 6.366061 GCATTTCAGAATTTTAGTTCGGCTTT 59.634 34.615 0.00 0.00 33.36 3.51
297 298 7.619982 GCATTTCAGAATTTTAGTTCGGCTTTG 60.620 37.037 0.00 0.00 33.36 2.77
298 299 6.627395 TTCAGAATTTTAGTTCGGCTTTGA 57.373 33.333 0.00 0.00 33.36 2.69
299 300 6.241207 TCAGAATTTTAGTTCGGCTTTGAG 57.759 37.500 0.00 0.00 33.36 3.02
300 301 4.853743 CAGAATTTTAGTTCGGCTTTGAGC 59.146 41.667 0.00 0.00 41.46 4.26
320 321 3.665745 CCAAAGGCACACTAGCAAATT 57.334 42.857 0.00 0.00 35.83 1.82
321 322 3.578688 CCAAAGGCACACTAGCAAATTC 58.421 45.455 0.00 0.00 35.83 2.17
322 323 3.578688 CAAAGGCACACTAGCAAATTCC 58.421 45.455 0.00 0.00 35.83 3.01
323 324 2.584835 AGGCACACTAGCAAATTCCA 57.415 45.000 0.00 0.00 35.83 3.53
324 325 2.875296 AGGCACACTAGCAAATTCCAA 58.125 42.857 0.00 0.00 35.83 3.53
325 326 2.558359 AGGCACACTAGCAAATTCCAAC 59.442 45.455 0.00 0.00 35.83 3.77
326 327 2.295909 GGCACACTAGCAAATTCCAACA 59.704 45.455 0.00 0.00 35.83 3.33
327 328 3.568538 GCACACTAGCAAATTCCAACAG 58.431 45.455 0.00 0.00 0.00 3.16
328 329 3.004734 GCACACTAGCAAATTCCAACAGT 59.995 43.478 0.00 0.00 0.00 3.55
329 330 4.539870 CACACTAGCAAATTCCAACAGTG 58.460 43.478 0.00 0.00 38.26 3.66
331 332 2.558359 ACTAGCAAATTCCAACAGTGGC 59.442 45.455 0.00 0.00 45.54 5.01
332 333 0.681175 AGCAAATTCCAACAGTGGCC 59.319 50.000 0.00 0.00 45.54 5.36
333 334 0.392336 GCAAATTCCAACAGTGGCCA 59.608 50.000 0.00 0.00 45.54 5.36
334 335 1.002315 GCAAATTCCAACAGTGGCCAT 59.998 47.619 9.72 0.00 45.54 4.40
335 336 2.233431 GCAAATTCCAACAGTGGCCATA 59.767 45.455 9.72 0.00 45.54 2.74
336 337 3.118665 GCAAATTCCAACAGTGGCCATAT 60.119 43.478 9.72 0.00 45.54 1.78
337 338 4.435425 CAAATTCCAACAGTGGCCATATG 58.565 43.478 9.72 14.41 45.54 1.78
338 339 1.473258 TTCCAACAGTGGCCATATGC 58.527 50.000 9.72 0.00 45.54 3.14
343 344 3.384146 CCAACAGTGGCCATATGCAAATA 59.616 43.478 9.72 0.00 43.89 1.40
397 398 1.336440 CATTGACAAACGACTTGGCCA 59.664 47.619 0.00 0.00 43.17 5.36
427 428 4.083003 GCGTCTGTACATTTCCATTTTCCA 60.083 41.667 0.00 0.00 0.00 3.53
447 448 5.441500 TCCAAATGGACTAATGCCGAAATA 58.558 37.500 0.00 0.00 39.78 1.40
509 510 6.279882 CCAGTTGGCTTTAACATGAGAAAAA 58.720 36.000 0.00 0.00 33.02 1.94
555 556 2.604462 GCAATCAAATTAAGCTTGGCCG 59.396 45.455 9.86 0.00 0.00 6.13
567 568 0.035458 CTTGGCCGAGTCTTGGAGTT 59.965 55.000 12.40 0.00 0.00 3.01
643 644 4.021456 CGCCACCATATATAGAACAGGTCA 60.021 45.833 0.00 0.00 0.00 4.02
645 646 5.934625 GCCACCATATATAGAACAGGTCAAG 59.065 44.000 0.00 0.00 0.00 3.02
706 766 3.058224 GTGAAGGGTTTCATTTCTGACCG 60.058 47.826 0.00 0.00 44.62 4.79
726 788 0.874607 AGACACCAACGTCGTTCAGC 60.875 55.000 7.86 0.00 40.98 4.26
761 823 4.568760 CCTTTCCTCGAGCTATTTTCTCAC 59.431 45.833 6.99 0.00 0.00 3.51
771 833 3.860536 GCTATTTTCTCACGTCTCTGTCC 59.139 47.826 0.00 0.00 0.00 4.02
808 870 1.836802 AGGTCATCCTTCTCCTTGAGC 59.163 52.381 0.00 0.00 42.12 4.26
809 871 1.556911 GGTCATCCTTCTCCTTGAGCA 59.443 52.381 0.00 0.00 36.77 4.26
886 948 2.430751 CGCACACTCGCACTAGCA 60.431 61.111 0.00 0.00 42.27 3.49
939 1001 2.337749 CTACACAGACCGGCTAGCGG 62.338 65.000 19.72 19.72 0.00 5.52
1011 1073 1.484038 GCTTTGCCATGGGGTTCATA 58.516 50.000 15.13 0.00 34.12 2.15
1222 1284 0.818445 CATCCAGGCTGCCATCTCAC 60.818 60.000 22.65 0.00 0.00 3.51
1246 1308 2.600731 CTGTGCTCAAGGTTAGTCTCG 58.399 52.381 0.00 0.00 0.00 4.04
1293 1355 6.094464 ACACACACGCTTAGACTGTATGTATA 59.906 38.462 0.00 0.00 0.00 1.47
1327 1389 5.808042 ATCACCTTGAATTCATGTCTTCG 57.192 39.130 9.40 1.43 0.00 3.79
1340 1402 7.780008 TTCATGTCTTCGTCTTCTTGTTTTA 57.220 32.000 0.00 0.00 0.00 1.52
1366 1428 7.068593 ACATGATTTGGTCACTCAAGAAAAGAA 59.931 33.333 0.00 0.00 40.28 2.52
1375 1437 5.478679 TCACTCAAGAAAAGAAAACCACCAA 59.521 36.000 0.00 0.00 0.00 3.67
1432 1501 1.796459 GTTCCGTGTGTGTATGTGGTC 59.204 52.381 0.00 0.00 0.00 4.02
1518 1587 8.642908 ACCTCTTTAATTTTTCCAACGAAAAG 57.357 30.769 0.00 0.00 46.07 2.27
1565 1634 5.235850 TCTTGTAGGTGCATGGTTTCTTA 57.764 39.130 0.00 0.00 0.00 2.10
1584 1653 6.662414 TCTTATTCCGAAGTGCAAGTAATG 57.338 37.500 0.00 0.00 0.00 1.90
1709 1822 9.678941 CATTTTCCATGATGAATCTGTCAATAG 57.321 33.333 0.00 0.00 40.50 1.73
1800 1944 4.660168 AGTTGAGCATTTTCCAGAGATGT 58.340 39.130 0.00 0.00 0.00 3.06
1801 1945 5.809001 AGTTGAGCATTTTCCAGAGATGTA 58.191 37.500 0.00 0.00 0.00 2.29
1809 1953 7.831193 AGCATTTTCCAGAGATGTATACAACTT 59.169 33.333 15.91 4.95 0.00 2.66
1842 1986 2.514582 TCTTCCTTCGGGGAGATCTACT 59.485 50.000 4.57 0.00 44.49 2.57
1843 1987 3.720526 TCTTCCTTCGGGGAGATCTACTA 59.279 47.826 4.57 0.00 44.49 1.82
1844 1988 3.505480 TCCTTCGGGGAGATCTACTAC 57.495 52.381 4.57 0.00 39.58 2.73
1845 1989 2.781757 TCCTTCGGGGAGATCTACTACA 59.218 50.000 4.57 0.00 39.58 2.74
1846 1990 3.398292 TCCTTCGGGGAGATCTACTACAT 59.602 47.826 4.57 0.00 39.58 2.29
1847 1991 3.508012 CCTTCGGGGAGATCTACTACATG 59.492 52.174 4.57 0.00 37.23 3.21
1848 1992 4.399219 CTTCGGGGAGATCTACTACATGA 58.601 47.826 4.57 0.00 0.00 3.07
1849 1993 4.448720 TCGGGGAGATCTACTACATGAA 57.551 45.455 4.57 0.00 0.00 2.57
1850 1994 4.399219 TCGGGGAGATCTACTACATGAAG 58.601 47.826 4.57 0.00 0.00 3.02
1851 1995 3.508012 CGGGGAGATCTACTACATGAAGG 59.492 52.174 4.57 0.00 0.00 3.46
1852 1996 4.742012 GGGGAGATCTACTACATGAAGGA 58.258 47.826 4.57 0.00 0.00 3.36
1853 1997 4.770010 GGGGAGATCTACTACATGAAGGAG 59.230 50.000 4.57 0.00 0.00 3.69
1854 1998 4.770010 GGGAGATCTACTACATGAAGGAGG 59.230 50.000 4.57 0.00 0.00 4.30
1855 1999 4.770010 GGAGATCTACTACATGAAGGAGGG 59.230 50.000 0.00 0.00 0.00 4.30
1856 2000 5.458362 GGAGATCTACTACATGAAGGAGGGA 60.458 48.000 0.00 0.00 0.00 4.20
1857 2001 5.640147 AGATCTACTACATGAAGGAGGGAG 58.360 45.833 0.00 0.00 0.00 4.30
1858 2002 4.883021 TCTACTACATGAAGGAGGGAGT 57.117 45.455 0.00 0.00 0.00 3.85
1859 2003 5.988865 TCTACTACATGAAGGAGGGAGTA 57.011 43.478 0.00 0.00 0.00 2.59
1860 2004 5.692928 TCTACTACATGAAGGAGGGAGTAC 58.307 45.833 0.00 0.00 0.00 2.73
1871 2015 2.487625 GGAGGGAGTACTATCTCGTGCT 60.488 54.545 14.86 0.00 35.52 4.40
1901 2209 2.225068 ATATCCCGAAGTTCAGTGCG 57.775 50.000 3.32 0.00 0.00 5.34
1938 2246 9.500864 CACAAAATTCCACACCAAAAATAAAAG 57.499 29.630 0.00 0.00 0.00 2.27
1957 2265 1.585006 CGGTTCGCACTACTCCACT 59.415 57.895 0.00 0.00 0.00 4.00
1960 2268 1.419374 GTTCGCACTACTCCACTGTG 58.581 55.000 0.00 0.00 35.08 3.66
2073 2385 0.834612 AAGTCCCGTCCACTTTGTGA 59.165 50.000 0.00 0.00 35.23 3.58
2229 3438 4.507388 AGTCTAGTCACGATTACTACTCGC 59.493 45.833 0.00 0.00 39.71 5.03
2304 3519 5.282055 TCTTGTATATTCAGCTGACAGGG 57.718 43.478 18.03 8.28 0.00 4.45
2340 3555 1.211969 CATCGACGTCAAGTCCGGT 59.788 57.895 17.16 0.00 46.92 5.28
2864 4079 1.743996 GGGCTTCAGGTCAAGATCAC 58.256 55.000 0.00 0.00 0.00 3.06
2877 4092 4.027295 GTCAAGATCACTAAAGATCACGCG 60.027 45.833 3.53 3.53 45.39 6.01
2919 4144 0.570734 CGCTTATTGTACGCCTCGTG 59.429 55.000 1.77 0.00 41.39 4.35
2963 4188 7.277396 TGGTTTTACATGTAGCTTAGGTATCC 58.723 38.462 5.56 0.00 0.00 2.59
2964 4189 7.092802 TGGTTTTACATGTAGCTTAGGTATCCA 60.093 37.037 5.56 1.77 0.00 3.41
2965 4190 7.937394 GGTTTTACATGTAGCTTAGGTATCCAT 59.063 37.037 5.56 0.00 0.00 3.41
2966 4191 8.989980 GTTTTACATGTAGCTTAGGTATCCATC 58.010 37.037 5.56 0.00 0.00 3.51
2967 4192 5.746990 ACATGTAGCTTAGGTATCCATCC 57.253 43.478 0.00 0.00 0.00 3.51
2968 4193 5.155161 ACATGTAGCTTAGGTATCCATCCA 58.845 41.667 0.00 0.00 0.00 3.41
2969 4194 5.606749 ACATGTAGCTTAGGTATCCATCCAA 59.393 40.000 0.00 0.00 0.00 3.53
2970 4195 6.101150 ACATGTAGCTTAGGTATCCATCCAAA 59.899 38.462 0.00 0.00 0.00 3.28
2971 4196 6.763715 TGTAGCTTAGGTATCCATCCAAAT 57.236 37.500 0.00 0.00 0.00 2.32
2972 4197 7.865530 TGTAGCTTAGGTATCCATCCAAATA 57.134 36.000 0.00 0.00 0.00 1.40
2973 4198 7.676947 TGTAGCTTAGGTATCCATCCAAATAC 58.323 38.462 0.00 0.00 0.00 1.89
2974 4199 6.128138 AGCTTAGGTATCCATCCAAATACC 57.872 41.667 3.82 3.82 45.19 2.73
2983 4208 9.533831 GGTATCCATCCAAATACCTCATATTTT 57.466 33.333 4.64 0.00 40.82 1.82
3009 4234 7.792374 TCTCCTAGTTTCATACAAATCATGC 57.208 36.000 0.00 0.00 0.00 4.06
3010 4235 7.337938 TCTCCTAGTTTCATACAAATCATGCA 58.662 34.615 0.00 0.00 0.00 3.96
3011 4236 7.828717 TCTCCTAGTTTCATACAAATCATGCAA 59.171 33.333 0.00 0.00 0.00 4.08
3012 4237 8.347004 TCCTAGTTTCATACAAATCATGCAAA 57.653 30.769 0.00 0.00 0.00 3.68
3013 4238 8.801299 TCCTAGTTTCATACAAATCATGCAAAA 58.199 29.630 0.00 0.00 0.00 2.44
3014 4239 9.079833 CCTAGTTTCATACAAATCATGCAAAAG 57.920 33.333 0.00 0.00 0.00 2.27
3015 4240 9.630098 CTAGTTTCATACAAATCATGCAAAAGT 57.370 29.630 0.00 0.00 0.00 2.66
3016 4241 8.891671 AGTTTCATACAAATCATGCAAAAGTT 57.108 26.923 0.00 0.00 0.00 2.66
3017 4242 9.328845 AGTTTCATACAAATCATGCAAAAGTTT 57.671 25.926 0.00 0.00 0.00 2.66
3018 4243 9.934190 GTTTCATACAAATCATGCAAAAGTTTT 57.066 25.926 0.00 0.00 0.00 2.43
3025 4250 8.891720 ACAAATCATGCAAAAGTTTTTACATGT 58.108 25.926 25.81 17.13 45.49 3.21
3058 4283 4.073293 AGTTTTGTCGTTGGAGATGTCT 57.927 40.909 0.00 0.00 0.00 3.41
3066 4291 3.213249 GTTGGAGATGTCTACGACGTT 57.787 47.619 5.50 0.00 31.90 3.99
3068 4293 2.429478 TGGAGATGTCTACGACGTTCA 58.571 47.619 5.50 4.23 34.95 3.18
3072 4297 1.852895 GATGTCTACGACGTTCATGCC 59.147 52.381 5.50 0.00 34.95 4.40
3122 4359 0.894141 CTCCGGCTCCTCATCCATAG 59.106 60.000 0.00 0.00 0.00 2.23
3123 4360 1.188219 TCCGGCTCCTCATCCATAGC 61.188 60.000 0.00 0.00 0.00 2.97
3127 4364 2.052779 CTCCTCATCCATAGCCGCA 58.947 57.895 0.00 0.00 0.00 5.69
3128 4365 0.320247 CTCCTCATCCATAGCCGCAC 60.320 60.000 0.00 0.00 0.00 5.34
3148 4385 2.818714 ATCTCGTCGACGTCCGCT 60.819 61.111 34.40 14.91 40.80 5.52
3202 4447 4.308458 CCGCCGCCGATTCCCATA 62.308 66.667 0.00 0.00 36.29 2.74
3221 4466 4.040952 CCATAGGAGGAAATCAAGGATCGT 59.959 45.833 0.00 0.00 0.00 3.73
3230 4475 0.610174 TCAAGGATCGTCTGCTGCTT 59.390 50.000 0.00 0.00 0.00 3.91
3253 4499 1.305802 TGTAGATCCACGGCCCAGT 60.306 57.895 0.00 0.00 0.00 4.00
3275 4521 4.400251 CCCACGTCCTCCCCTCCT 62.400 72.222 0.00 0.00 0.00 3.69
3276 4522 2.760385 CCACGTCCTCCCCTCCTC 60.760 72.222 0.00 0.00 0.00 3.71
3278 4524 3.273654 ACGTCCTCCCCTCCTCCA 61.274 66.667 0.00 0.00 0.00 3.86
3281 4534 2.874245 TCCTCCCCTCCTCCACCA 60.874 66.667 0.00 0.00 0.00 4.17
3283 4536 2.689034 CTCCCCTCCTCCACCACC 60.689 72.222 0.00 0.00 0.00 4.61
3284 4537 3.537506 TCCCCTCCTCCACCACCA 61.538 66.667 0.00 0.00 0.00 4.17
3299 4561 2.041405 CCACCTCCTCCTCCTCCC 60.041 72.222 0.00 0.00 0.00 4.30
3300 4562 2.641746 CCACCTCCTCCTCCTCCCT 61.642 68.421 0.00 0.00 0.00 4.20
3306 4568 1.156322 TCCTCCTCCTCCCTGTCCTT 61.156 60.000 0.00 0.00 0.00 3.36
3309 4571 0.545309 TCCTCCTCCCTGTCCTTGTG 60.545 60.000 0.00 0.00 0.00 3.33
3316 4581 1.298014 CCTGTCCTTGTGCTCCTCC 59.702 63.158 0.00 0.00 0.00 4.30
3335 4600 0.478942 CTCCTCCTCCGGATCTACCA 59.521 60.000 3.57 0.00 38.90 3.25
3339 4604 2.320781 CTCCTCCGGATCTACCACATT 58.679 52.381 3.57 0.00 38.90 2.71
3340 4605 3.497332 CTCCTCCGGATCTACCACATTA 58.503 50.000 3.57 0.00 38.90 1.90
3341 4606 3.895656 CTCCTCCGGATCTACCACATTAA 59.104 47.826 3.57 0.00 38.90 1.40
3354 4619 2.764572 CCACATTAAGAGGTAGGACCGT 59.235 50.000 0.00 0.00 44.90 4.83
3383 4648 2.281761 CTTCGTGCCTTGCCAGGT 60.282 61.111 5.61 0.00 43.18 4.00
3405 4670 2.195567 GCTCAAGGTGTTGCAGCCA 61.196 57.895 0.00 0.00 33.88 4.75
3412 4677 4.933563 TGTTGCAGCCAGCGCTCA 62.934 61.111 7.13 0.00 43.95 4.26
3413 4678 3.663176 GTTGCAGCCAGCGCTCAA 61.663 61.111 7.13 5.50 43.95 3.02
3423 4688 1.945394 CCAGCGCTCAAGCATTAGATT 59.055 47.619 7.13 0.00 42.21 2.40
3428 4701 4.272018 AGCGCTCAAGCATTAGATTAGTTG 59.728 41.667 2.64 0.00 42.21 3.16
3431 4705 5.521735 CGCTCAAGCATTAGATTAGTTGACT 59.478 40.000 2.50 0.00 42.21 3.41
3459 4733 2.698797 GTGGGAGCATAGCTACTACCAA 59.301 50.000 15.27 0.00 43.77 3.67
3460 4734 3.134081 GTGGGAGCATAGCTACTACCAAA 59.866 47.826 15.27 0.00 43.77 3.28
3545 4844 3.284449 GTTTCGGTGCCAGCGGTT 61.284 61.111 17.01 0.00 39.89 4.44
3664 4964 1.447838 CTTGTGGGACCCATCGTCG 60.448 63.158 18.51 0.06 42.99 5.12
3705 5005 1.535687 GAGGCCCCCTATCCGCTTA 60.536 63.158 0.00 0.00 31.76 3.09
3706 5006 1.074014 AGGCCCCCTATCCGCTTAA 60.074 57.895 0.00 0.00 28.47 1.85
3711 5024 2.963101 GCCCCCTATCCGCTTAAATTTT 59.037 45.455 0.00 0.00 0.00 1.82
3735 5048 0.182775 GAATATGAGGGGTGCCGGTT 59.817 55.000 1.90 0.00 0.00 4.44
3743 5056 4.029809 GGTGCCGGTTAGCCTGGT 62.030 66.667 1.90 0.00 33.15 4.00
3773 5086 2.094545 GCCCGTTTAAGAAGACCGTCTA 60.095 50.000 0.26 0.00 0.00 2.59
3823 5141 2.281484 GCCTGGGCGTTTGAGACA 60.281 61.111 0.00 0.00 0.00 3.41
3824 5142 1.896660 GCCTGGGCGTTTGAGACAA 60.897 57.895 0.00 0.00 0.00 3.18
3829 5147 2.875933 CTGGGCGTTTGAGACAAGTTTA 59.124 45.455 0.00 0.00 0.00 2.01
3850 5168 0.104855 GATGTCCGGCTGTAGATGCA 59.895 55.000 0.00 0.00 0.00 3.96
3851 5169 0.761187 ATGTCCGGCTGTAGATGCAT 59.239 50.000 0.00 0.00 0.00 3.96
3856 5174 4.039852 TGTCCGGCTGTAGATGCATTTATA 59.960 41.667 0.00 0.00 0.00 0.98
3857 5175 4.994852 GTCCGGCTGTAGATGCATTTATAA 59.005 41.667 0.00 0.00 0.00 0.98
3858 5176 4.994852 TCCGGCTGTAGATGCATTTATAAC 59.005 41.667 0.00 0.00 0.00 1.89
3859 5177 4.754618 CCGGCTGTAGATGCATTTATAACA 59.245 41.667 0.00 0.00 0.00 2.41
3860 5178 5.334105 CCGGCTGTAGATGCATTTATAACAC 60.334 44.000 0.00 0.00 0.00 3.32
3861 5179 5.236263 CGGCTGTAGATGCATTTATAACACA 59.764 40.000 0.00 0.00 0.00 3.72
3862 5180 6.073058 CGGCTGTAGATGCATTTATAACACAT 60.073 38.462 0.00 0.00 0.00 3.21
3863 5181 7.301054 GGCTGTAGATGCATTTATAACACATC 58.699 38.462 0.00 11.17 37.89 3.06
3864 5182 7.301054 GCTGTAGATGCATTTATAACACATCC 58.699 38.462 0.00 5.22 38.28 3.51
3865 5183 7.173907 GCTGTAGATGCATTTATAACACATCCT 59.826 37.037 0.00 0.00 38.28 3.24
3866 5184 9.710900 CTGTAGATGCATTTATAACACATCCTA 57.289 33.333 0.00 0.00 38.28 2.94
3870 5188 9.578576 AGATGCATTTATAACACATCCTATGTT 57.421 29.630 0.00 0.00 42.70 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 8.899771 ACTCGGGAAAATAAACGAATCATTAAT 58.100 29.630 0.00 0.00 34.70 1.40
4 5 8.271312 ACTCGGGAAAATAAACGAATCATTAA 57.729 30.769 0.00 0.00 34.70 1.40
6 7 6.753107 ACTCGGGAAAATAAACGAATCATT 57.247 33.333 0.00 0.00 34.70 2.57
7 8 6.018180 GCTACTCGGGAAAATAAACGAATCAT 60.018 38.462 0.00 0.00 34.70 2.45
8 9 5.292589 GCTACTCGGGAAAATAAACGAATCA 59.707 40.000 0.00 0.00 34.70 2.57
9 10 5.292589 TGCTACTCGGGAAAATAAACGAATC 59.707 40.000 0.00 0.00 34.70 2.52
10 11 5.180271 TGCTACTCGGGAAAATAAACGAAT 58.820 37.500 0.00 0.00 34.70 3.34
11 12 4.567971 TGCTACTCGGGAAAATAAACGAA 58.432 39.130 0.00 0.00 34.70 3.85
12 13 4.191033 TGCTACTCGGGAAAATAAACGA 57.809 40.909 0.00 0.00 0.00 3.85
13 14 4.932268 TTGCTACTCGGGAAAATAAACG 57.068 40.909 0.00 0.00 0.00 3.60
14 15 9.797556 ATATTTTTGCTACTCGGGAAAATAAAC 57.202 29.630 0.00 0.00 36.65 2.01
15 16 9.796120 CATATTTTTGCTACTCGGGAAAATAAA 57.204 29.630 0.00 0.00 36.65 1.40
16 17 8.410141 CCATATTTTTGCTACTCGGGAAAATAA 58.590 33.333 0.00 0.00 36.65 1.40
17 18 7.776030 TCCATATTTTTGCTACTCGGGAAAATA 59.224 33.333 0.00 0.00 36.65 1.40
18 19 6.605594 TCCATATTTTTGCTACTCGGGAAAAT 59.394 34.615 0.00 0.00 36.65 1.82
19 20 5.946972 TCCATATTTTTGCTACTCGGGAAAA 59.053 36.000 0.00 0.00 35.38 2.29
20 21 5.355910 GTCCATATTTTTGCTACTCGGGAAA 59.644 40.000 0.00 0.00 0.00 3.13
21 22 4.879545 GTCCATATTTTTGCTACTCGGGAA 59.120 41.667 0.00 0.00 0.00 3.97
22 23 4.080807 TGTCCATATTTTTGCTACTCGGGA 60.081 41.667 0.00 0.00 0.00 5.14
23 24 4.196193 TGTCCATATTTTTGCTACTCGGG 58.804 43.478 0.00 0.00 0.00 5.14
24 25 5.811399 TTGTCCATATTTTTGCTACTCGG 57.189 39.130 0.00 0.00 0.00 4.63
25 26 6.688385 CACATTGTCCATATTTTTGCTACTCG 59.312 38.462 0.00 0.00 0.00 4.18
26 27 7.538575 ACACATTGTCCATATTTTTGCTACTC 58.461 34.615 0.00 0.00 0.00 2.59
27 28 7.466746 ACACATTGTCCATATTTTTGCTACT 57.533 32.000 0.00 0.00 0.00 2.57
30 31 8.137437 GCTATACACATTGTCCATATTTTTGCT 58.863 33.333 0.00 0.00 0.00 3.91
31 32 8.137437 AGCTATACACATTGTCCATATTTTTGC 58.863 33.333 0.00 0.00 0.00 3.68
32 33 9.669353 GAGCTATACACATTGTCCATATTTTTG 57.331 33.333 0.00 0.00 0.00 2.44
33 34 9.632638 AGAGCTATACACATTGTCCATATTTTT 57.367 29.630 0.00 0.00 0.00 1.94
34 35 9.060347 CAGAGCTATACACATTGTCCATATTTT 57.940 33.333 0.00 0.00 0.00 1.82
35 36 8.213679 ACAGAGCTATACACATTGTCCATATTT 58.786 33.333 0.00 0.00 0.00 1.40
36 37 7.739825 ACAGAGCTATACACATTGTCCATATT 58.260 34.615 0.00 0.00 0.00 1.28
37 38 7.308450 ACAGAGCTATACACATTGTCCATAT 57.692 36.000 0.00 0.00 0.00 1.78
38 39 6.731292 ACAGAGCTATACACATTGTCCATA 57.269 37.500 0.00 0.00 0.00 2.74
39 40 5.605534 GACAGAGCTATACACATTGTCCAT 58.394 41.667 0.00 0.00 0.00 3.41
40 41 5.011090 GACAGAGCTATACACATTGTCCA 57.989 43.478 0.00 0.00 0.00 4.02
41 42 4.372656 GGACAGAGCTATACACATTGTCC 58.627 47.826 5.15 5.15 44.17 4.02
42 43 5.269505 AGGACAGAGCTATACACATTGTC 57.730 43.478 0.00 0.00 34.30 3.18
43 44 4.202060 CGAGGACAGAGCTATACACATTGT 60.202 45.833 0.00 0.00 0.00 2.71
44 45 4.294232 CGAGGACAGAGCTATACACATTG 58.706 47.826 0.00 0.00 0.00 2.82
45 46 3.319405 CCGAGGACAGAGCTATACACATT 59.681 47.826 0.00 0.00 0.00 2.71
46 47 2.887783 CCGAGGACAGAGCTATACACAT 59.112 50.000 0.00 0.00 0.00 3.21
47 48 2.298610 CCGAGGACAGAGCTATACACA 58.701 52.381 0.00 0.00 0.00 3.72
48 49 1.001158 GCCGAGGACAGAGCTATACAC 60.001 57.143 0.00 0.00 0.00 2.90
49 50 1.133761 AGCCGAGGACAGAGCTATACA 60.134 52.381 0.00 0.00 32.73 2.29
50 51 1.538075 GAGCCGAGGACAGAGCTATAC 59.462 57.143 0.00 0.00 35.23 1.47
51 52 1.143073 TGAGCCGAGGACAGAGCTATA 59.857 52.381 0.00 0.00 35.23 1.31
52 53 0.106469 TGAGCCGAGGACAGAGCTAT 60.106 55.000 0.00 0.00 35.23 2.97
53 54 0.323451 TTGAGCCGAGGACAGAGCTA 60.323 55.000 0.00 0.00 35.23 3.32
54 55 0.975040 ATTGAGCCGAGGACAGAGCT 60.975 55.000 0.00 0.00 38.56 4.09
55 56 0.529555 GATTGAGCCGAGGACAGAGC 60.530 60.000 0.00 0.00 0.00 4.09
56 57 0.103937 GGATTGAGCCGAGGACAGAG 59.896 60.000 0.00 0.00 0.00 3.35
57 58 1.330655 GGGATTGAGCCGAGGACAGA 61.331 60.000 0.00 0.00 0.00 3.41
58 59 1.144936 GGGATTGAGCCGAGGACAG 59.855 63.158 0.00 0.00 0.00 3.51
59 60 2.721167 CGGGATTGAGCCGAGGACA 61.721 63.158 0.00 0.00 0.00 4.02
60 61 2.107141 CGGGATTGAGCCGAGGAC 59.893 66.667 0.00 0.00 0.00 3.85
61 62 3.849951 GCGGGATTGAGCCGAGGA 61.850 66.667 0.00 0.00 0.00 3.71
62 63 3.680620 TTGCGGGATTGAGCCGAGG 62.681 63.158 0.00 0.00 0.00 4.63
63 64 2.125147 TTGCGGGATTGAGCCGAG 60.125 61.111 0.00 0.00 0.00 4.63
64 65 2.435938 GTTGCGGGATTGAGCCGA 60.436 61.111 0.00 0.00 0.00 5.54
65 66 3.508840 GGTTGCGGGATTGAGCCG 61.509 66.667 0.00 0.00 0.00 5.52
66 67 3.140814 GGGTTGCGGGATTGAGCC 61.141 66.667 0.00 0.00 0.00 4.70
67 68 3.508840 CGGGTTGCGGGATTGAGC 61.509 66.667 0.00 0.00 0.00 4.26
68 69 3.508840 GCGGGTTGCGGGATTGAG 61.509 66.667 0.00 0.00 0.00 3.02
91 92 4.919987 GGTACTACGAGCCGCGCC 62.920 72.222 0.00 0.00 46.04 6.53
93 94 3.566853 TCGGTACTACGAGCCGCG 61.567 66.667 0.00 0.00 44.58 6.46
99 100 2.108514 CCACGCCTCGGTACTACGA 61.109 63.158 0.00 0.00 41.13 3.43
100 101 2.406401 CCACGCCTCGGTACTACG 59.594 66.667 0.00 0.00 0.00 3.51
101 102 2.103736 GCCACGCCTCGGTACTAC 59.896 66.667 0.00 0.00 0.00 2.73
102 103 3.511595 CGCCACGCCTCGGTACTA 61.512 66.667 0.00 0.00 0.00 1.82
104 105 4.849329 CTCGCCACGCCTCGGTAC 62.849 72.222 0.00 0.00 0.00 3.34
119 120 3.132481 CTTCCTCCTCGCTCGCCTC 62.132 68.421 0.00 0.00 0.00 4.70
120 121 3.144193 CTTCCTCCTCGCTCGCCT 61.144 66.667 0.00 0.00 0.00 5.52
121 122 2.711922 TTCTTCCTCCTCGCTCGCC 61.712 63.158 0.00 0.00 0.00 5.54
122 123 1.517475 GTTCTTCCTCCTCGCTCGC 60.517 63.158 0.00 0.00 0.00 5.03
123 124 1.226435 CGTTCTTCCTCCTCGCTCG 60.226 63.158 0.00 0.00 0.00 5.03
124 125 1.517475 GCGTTCTTCCTCCTCGCTC 60.517 63.158 0.00 0.00 42.88 5.03
125 126 2.574399 GCGTTCTTCCTCCTCGCT 59.426 61.111 0.00 0.00 42.88 4.93
126 127 2.881352 CGCGTTCTTCCTCCTCGC 60.881 66.667 0.00 0.00 42.78 5.03
127 128 1.801913 CACGCGTTCTTCCTCCTCG 60.802 63.158 10.22 0.00 0.00 4.63
128 129 1.009389 CACACGCGTTCTTCCTCCTC 61.009 60.000 10.22 0.00 0.00 3.71
129 130 1.006102 CACACGCGTTCTTCCTCCT 60.006 57.895 10.22 0.00 0.00 3.69
130 131 0.038892 TACACACGCGTTCTTCCTCC 60.039 55.000 10.22 0.00 0.00 4.30
131 132 1.337821 CTACACACGCGTTCTTCCTC 58.662 55.000 10.22 0.00 0.00 3.71
132 133 0.038526 CCTACACACGCGTTCTTCCT 60.039 55.000 10.22 0.00 0.00 3.36
133 134 0.319297 ACCTACACACGCGTTCTTCC 60.319 55.000 10.22 0.00 0.00 3.46
134 135 1.058404 GACCTACACACGCGTTCTTC 58.942 55.000 10.22 0.00 0.00 2.87
135 136 0.672342 AGACCTACACACGCGTTCTT 59.328 50.000 10.22 0.00 0.00 2.52
136 137 0.240411 GAGACCTACACACGCGTTCT 59.760 55.000 10.22 8.29 0.00 3.01
137 138 0.731855 GGAGACCTACACACGCGTTC 60.732 60.000 10.22 2.09 0.00 3.95
138 139 1.177256 AGGAGACCTACACACGCGTT 61.177 55.000 10.22 0.00 28.47 4.84
139 140 1.584380 GAGGAGACCTACACACGCGT 61.584 60.000 5.58 5.58 31.76 6.01
140 141 1.136984 GAGGAGACCTACACACGCG 59.863 63.158 3.53 3.53 31.76 6.01
141 142 0.889306 AAGAGGAGACCTACACACGC 59.111 55.000 0.00 0.00 31.76 5.34
142 143 2.420722 GAGAAGAGGAGACCTACACACG 59.579 54.545 0.00 0.00 31.76 4.49
143 144 3.422796 TGAGAAGAGGAGACCTACACAC 58.577 50.000 0.00 0.00 31.76 3.82
144 145 3.808834 TGAGAAGAGGAGACCTACACA 57.191 47.619 0.00 0.00 31.76 3.72
145 146 4.464597 ACATTGAGAAGAGGAGACCTACAC 59.535 45.833 0.00 0.00 31.76 2.90
146 147 4.678256 ACATTGAGAAGAGGAGACCTACA 58.322 43.478 0.00 0.00 31.76 2.74
147 148 4.707448 TGACATTGAGAAGAGGAGACCTAC 59.293 45.833 0.00 0.00 31.76 3.18
148 149 4.935578 TGACATTGAGAAGAGGAGACCTA 58.064 43.478 0.00 0.00 31.76 3.08
149 150 3.784178 TGACATTGAGAAGAGGAGACCT 58.216 45.455 0.00 0.00 36.03 3.85
150 151 4.751767 ATGACATTGAGAAGAGGAGACC 57.248 45.455 0.00 0.00 0.00 3.85
151 152 6.214191 TGTATGACATTGAGAAGAGGAGAC 57.786 41.667 0.00 0.00 0.00 3.36
152 153 6.438741 ACTTGTATGACATTGAGAAGAGGAGA 59.561 38.462 0.00 0.00 0.00 3.71
153 154 6.534436 CACTTGTATGACATTGAGAAGAGGAG 59.466 42.308 0.00 0.00 0.00 3.69
154 155 6.211384 TCACTTGTATGACATTGAGAAGAGGA 59.789 38.462 0.00 0.00 0.00 3.71
155 156 6.401394 TCACTTGTATGACATTGAGAAGAGG 58.599 40.000 0.00 0.00 0.00 3.69
156 157 9.247126 CTATCACTTGTATGACATTGAGAAGAG 57.753 37.037 0.00 0.00 0.00 2.85
157 158 8.971073 TCTATCACTTGTATGACATTGAGAAGA 58.029 33.333 0.00 0.00 0.00 2.87
158 159 9.591792 TTCTATCACTTGTATGACATTGAGAAG 57.408 33.333 0.00 0.00 0.00 2.85
159 160 9.591792 CTTCTATCACTTGTATGACATTGAGAA 57.408 33.333 0.00 0.00 0.00 2.87
160 161 8.971073 TCTTCTATCACTTGTATGACATTGAGA 58.029 33.333 0.00 0.00 0.00 3.27
161 162 9.247126 CTCTTCTATCACTTGTATGACATTGAG 57.753 37.037 0.00 0.00 0.00 3.02
162 163 7.708322 GCTCTTCTATCACTTGTATGACATTGA 59.292 37.037 0.00 0.00 0.00 2.57
163 164 7.710044 AGCTCTTCTATCACTTGTATGACATTG 59.290 37.037 0.00 0.00 0.00 2.82
164 165 7.790027 AGCTCTTCTATCACTTGTATGACATT 58.210 34.615 0.00 0.00 0.00 2.71
165 166 7.358770 AGCTCTTCTATCACTTGTATGACAT 57.641 36.000 0.00 0.00 0.00 3.06
166 167 6.782082 AGCTCTTCTATCACTTGTATGACA 57.218 37.500 0.00 0.00 0.00 3.58
167 168 8.410141 AGTAAGCTCTTCTATCACTTGTATGAC 58.590 37.037 0.00 0.00 0.00 3.06
168 169 8.526667 AGTAAGCTCTTCTATCACTTGTATGA 57.473 34.615 0.00 0.00 0.00 2.15
169 170 9.593134 AAAGTAAGCTCTTCTATCACTTGTATG 57.407 33.333 0.00 0.00 0.00 2.39
191 192 9.289782 AGTGAGACTTGCATTTCTTTATAAAGT 57.710 29.630 21.69 3.41 37.31 2.66
196 197 9.289782 AGTTAAGTGAGACTTGCATTTCTTTAT 57.710 29.630 0.00 0.00 39.11 1.40
197 198 8.677148 AGTTAAGTGAGACTTGCATTTCTTTA 57.323 30.769 0.00 0.00 39.11 1.85
198 199 7.573968 AGTTAAGTGAGACTTGCATTTCTTT 57.426 32.000 0.00 0.00 39.11 2.52
199 200 7.573968 AAGTTAAGTGAGACTTGCATTTCTT 57.426 32.000 0.00 0.00 39.11 2.52
200 201 7.573968 AAAGTTAAGTGAGACTTGCATTTCT 57.426 32.000 0.00 0.00 39.11 2.52
201 202 7.168135 CCAAAAGTTAAGTGAGACTTGCATTTC 59.832 37.037 0.00 0.00 39.11 2.17
202 203 6.980397 CCAAAAGTTAAGTGAGACTTGCATTT 59.020 34.615 0.00 0.00 39.11 2.32
203 204 6.321181 TCCAAAAGTTAAGTGAGACTTGCATT 59.679 34.615 0.00 0.00 39.11 3.56
204 205 5.827797 TCCAAAAGTTAAGTGAGACTTGCAT 59.172 36.000 0.00 0.00 39.11 3.96
205 206 5.189928 TCCAAAAGTTAAGTGAGACTTGCA 58.810 37.500 0.00 0.00 39.11 4.08
206 207 5.751243 TCCAAAAGTTAAGTGAGACTTGC 57.249 39.130 0.00 0.00 39.11 4.01
207 208 7.930217 TCATTCCAAAAGTTAAGTGAGACTTG 58.070 34.615 0.00 0.00 39.11 3.16
208 209 7.993183 TCTCATTCCAAAAGTTAAGTGAGACTT 59.007 33.333 0.00 0.00 41.97 3.01
209 210 7.509546 TCTCATTCCAAAAGTTAAGTGAGACT 58.490 34.615 0.00 0.00 36.78 3.24
210 211 7.730364 TCTCATTCCAAAAGTTAAGTGAGAC 57.270 36.000 0.00 0.00 36.78 3.36
211 212 7.509546 AGTCTCATTCCAAAAGTTAAGTGAGA 58.490 34.615 0.00 0.00 38.67 3.27
212 213 7.736447 AGTCTCATTCCAAAAGTTAAGTGAG 57.264 36.000 0.00 0.00 34.63 3.51
213 214 9.621629 TTTAGTCTCATTCCAAAAGTTAAGTGA 57.378 29.630 0.00 0.00 0.00 3.41
214 215 9.665264 GTTTAGTCTCATTCCAAAAGTTAAGTG 57.335 33.333 0.00 0.00 0.00 3.16
215 216 9.628500 AGTTTAGTCTCATTCCAAAAGTTAAGT 57.372 29.630 0.00 0.00 0.00 2.24
220 221 9.628500 ACTAAAGTTTAGTCTCATTCCAAAAGT 57.372 29.630 20.34 0.00 0.00 2.66
233 234 6.641723 GGTGTGAGTGAGACTAAAGTTTAGTC 59.358 42.308 34.14 34.14 43.08 2.59
234 235 6.097839 TGGTGTGAGTGAGACTAAAGTTTAGT 59.902 38.462 24.91 24.91 0.00 2.24
235 236 6.513180 TGGTGTGAGTGAGACTAAAGTTTAG 58.487 40.000 19.07 19.07 0.00 1.85
236 237 6.474140 TGGTGTGAGTGAGACTAAAGTTTA 57.526 37.500 0.00 0.00 0.00 2.01
237 238 5.353394 TGGTGTGAGTGAGACTAAAGTTT 57.647 39.130 0.00 0.00 0.00 2.66
238 239 5.552870 ATGGTGTGAGTGAGACTAAAGTT 57.447 39.130 0.00 0.00 0.00 2.66
239 240 5.070446 TGAATGGTGTGAGTGAGACTAAAGT 59.930 40.000 0.00 0.00 0.00 2.66
240 241 5.541845 TGAATGGTGTGAGTGAGACTAAAG 58.458 41.667 0.00 0.00 0.00 1.85
241 242 5.545063 TGAATGGTGTGAGTGAGACTAAA 57.455 39.130 0.00 0.00 0.00 1.85
242 243 5.745312 ATGAATGGTGTGAGTGAGACTAA 57.255 39.130 0.00 0.00 0.00 2.24
243 244 6.381133 ACATATGAATGGTGTGAGTGAGACTA 59.619 38.462 10.38 0.00 37.43 2.59
244 245 5.188555 ACATATGAATGGTGTGAGTGAGACT 59.811 40.000 10.38 0.00 37.43 3.24
245 246 5.292834 CACATATGAATGGTGTGAGTGAGAC 59.707 44.000 10.38 0.00 44.48 3.36
246 247 5.046376 ACACATATGAATGGTGTGAGTGAGA 60.046 40.000 10.38 0.00 44.48 3.27
247 248 5.064325 CACACATATGAATGGTGTGAGTGAG 59.936 44.000 16.68 0.00 44.48 3.51
248 249 4.937015 CACACATATGAATGGTGTGAGTGA 59.063 41.667 16.68 0.00 44.48 3.41
249 250 4.437794 GCACACATATGAATGGTGTGAGTG 60.438 45.833 23.58 7.80 44.48 3.51
250 251 3.691118 GCACACATATGAATGGTGTGAGT 59.309 43.478 23.58 0.00 44.48 3.41
251 252 3.690628 TGCACACATATGAATGGTGTGAG 59.309 43.478 23.58 14.27 44.48 3.51
252 253 3.683802 TGCACACATATGAATGGTGTGA 58.316 40.909 23.58 9.36 44.48 3.58
253 254 4.642445 ATGCACACATATGAATGGTGTG 57.358 40.909 17.18 17.18 46.47 3.82
254 255 5.185442 TGAAATGCACACATATGAATGGTGT 59.815 36.000 10.38 0.00 36.98 4.16
255 256 5.652518 TGAAATGCACACATATGAATGGTG 58.347 37.500 10.38 12.33 37.43 4.17
256 257 5.653330 TCTGAAATGCACACATATGAATGGT 59.347 36.000 10.38 0.00 37.43 3.55
257 258 6.139048 TCTGAAATGCACACATATGAATGG 57.861 37.500 10.38 0.00 37.43 3.16
258 259 8.642908 AATTCTGAAATGCACACATATGAATG 57.357 30.769 10.38 8.08 34.62 2.67
259 260 9.661563 AAAATTCTGAAATGCACACATATGAAT 57.338 25.926 10.38 0.00 34.62 2.57
261 262 9.791820 CTAAAATTCTGAAATGCACACATATGA 57.208 29.630 10.38 0.00 34.62 2.15
262 263 9.577110 ACTAAAATTCTGAAATGCACACATATG 57.423 29.630 0.00 0.00 34.62 1.78
264 265 9.624697 GAACTAAAATTCTGAAATGCACACATA 57.375 29.630 0.00 0.00 34.62 2.29
265 266 7.326789 CGAACTAAAATTCTGAAATGCACACAT 59.673 33.333 0.00 0.00 38.49 3.21
266 267 6.636447 CGAACTAAAATTCTGAAATGCACACA 59.364 34.615 0.00 0.00 0.00 3.72
267 268 6.088085 CCGAACTAAAATTCTGAAATGCACAC 59.912 38.462 0.00 0.00 0.00 3.82
268 269 6.148948 CCGAACTAAAATTCTGAAATGCACA 58.851 36.000 0.00 0.00 0.00 4.57
269 270 5.060940 GCCGAACTAAAATTCTGAAATGCAC 59.939 40.000 0.00 0.00 0.00 4.57
270 271 5.048083 AGCCGAACTAAAATTCTGAAATGCA 60.048 36.000 0.00 0.00 0.00 3.96
271 272 5.402398 AGCCGAACTAAAATTCTGAAATGC 58.598 37.500 0.00 0.00 0.00 3.56
272 273 7.594758 TCAAAGCCGAACTAAAATTCTGAAATG 59.405 33.333 0.00 0.00 0.00 2.32
273 274 7.657336 TCAAAGCCGAACTAAAATTCTGAAAT 58.343 30.769 0.00 0.00 0.00 2.17
274 275 7.033530 TCAAAGCCGAACTAAAATTCTGAAA 57.966 32.000 0.00 0.00 0.00 2.69
275 276 6.627395 TCAAAGCCGAACTAAAATTCTGAA 57.373 33.333 0.00 0.00 0.00 3.02
276 277 5.334879 GCTCAAAGCCGAACTAAAATTCTGA 60.335 40.000 0.00 0.00 34.48 3.27
277 278 4.853743 GCTCAAAGCCGAACTAAAATTCTG 59.146 41.667 0.00 0.00 34.48 3.02
278 279 5.048153 GCTCAAAGCCGAACTAAAATTCT 57.952 39.130 0.00 0.00 34.48 2.40
300 301 3.578688 GAATTTGCTAGTGTGCCTTTGG 58.421 45.455 0.00 0.00 0.00 3.28
301 302 3.005684 TGGAATTTGCTAGTGTGCCTTTG 59.994 43.478 0.00 0.00 0.00 2.77
302 303 3.230134 TGGAATTTGCTAGTGTGCCTTT 58.770 40.909 0.00 0.00 0.00 3.11
303 304 2.875296 TGGAATTTGCTAGTGTGCCTT 58.125 42.857 0.00 0.00 0.00 4.35
304 305 2.558359 GTTGGAATTTGCTAGTGTGCCT 59.442 45.455 0.00 0.00 0.00 4.75
305 306 2.295909 TGTTGGAATTTGCTAGTGTGCC 59.704 45.455 0.00 0.00 0.00 5.01
306 307 3.004734 ACTGTTGGAATTTGCTAGTGTGC 59.995 43.478 0.00 0.00 0.00 4.57
307 308 4.539870 CACTGTTGGAATTTGCTAGTGTG 58.460 43.478 0.00 0.00 31.85 3.82
308 309 4.836125 CACTGTTGGAATTTGCTAGTGT 57.164 40.909 0.00 0.00 31.85 3.55
321 322 8.055335 CATATATTTGCATATGGCCACTGTTGG 61.055 40.741 8.16 0.00 43.89 3.77
322 323 3.530265 ATTTGCATATGGCCACTGTTG 57.470 42.857 8.16 4.45 43.89 3.33
323 324 6.071221 CCATATATTTGCATATGGCCACTGTT 60.071 38.462 8.16 0.00 46.74 3.16
324 325 5.419788 CCATATATTTGCATATGGCCACTGT 59.580 40.000 8.16 0.00 46.74 3.55
325 326 5.898174 CCATATATTTGCATATGGCCACTG 58.102 41.667 8.16 10.60 46.74 3.66
332 333 6.093909 TGCGGAGAACCATATATTTGCATATG 59.906 38.462 0.00 0.00 38.22 1.78
333 334 6.179756 TGCGGAGAACCATATATTTGCATAT 58.820 36.000 0.00 0.00 35.59 1.78
334 335 5.555966 TGCGGAGAACCATATATTTGCATA 58.444 37.500 0.00 0.00 35.59 3.14
335 336 4.397420 TGCGGAGAACCATATATTTGCAT 58.603 39.130 0.00 0.00 35.59 3.96
336 337 3.814625 TGCGGAGAACCATATATTTGCA 58.185 40.909 0.00 0.00 35.59 4.08
337 338 6.683974 ATATGCGGAGAACCATATATTTGC 57.316 37.500 0.00 0.00 33.97 3.68
343 344 8.840321 GCAAATAATATATGCGGAGAACCATAT 58.160 33.333 0.00 0.00 38.05 1.78
364 365 2.481854 TGTCAATGCAAAAGCGCAAAT 58.518 38.095 11.47 0.00 46.87 2.32
397 398 3.326747 GAAATGTACAGACGCCAAGAGT 58.673 45.455 0.33 0.00 0.00 3.24
427 428 4.278419 GGCTATTTCGGCATTAGTCCATTT 59.722 41.667 0.00 0.00 0.00 2.32
461 462 5.640218 TTTTACCGTGTTGTCGTTTCTAG 57.360 39.130 0.00 0.00 0.00 2.43
497 498 2.096218 GTCTCGCGCTTTTTCTCATGTT 60.096 45.455 5.56 0.00 0.00 2.71
498 499 1.461127 GTCTCGCGCTTTTTCTCATGT 59.539 47.619 5.56 0.00 0.00 3.21
509 510 2.022129 CGTTTCCTTGTCTCGCGCT 61.022 57.895 5.56 0.00 0.00 5.92
511 512 3.011760 GCCGTTTCCTTGTCTCGCG 62.012 63.158 0.00 0.00 0.00 5.87
555 556 3.735514 GCAGGTCGATAACTCCAAGACTC 60.736 52.174 0.00 0.00 32.86 3.36
567 568 0.818938 TAACAAGGCGCAGGTCGATA 59.181 50.000 10.83 0.00 41.67 2.92
643 644 0.391661 ATCATCTGTTGACGCGCCTT 60.392 50.000 5.73 0.00 37.11 4.35
645 646 1.083806 TGATCATCTGTTGACGCGCC 61.084 55.000 5.73 0.00 37.11 6.53
706 766 1.129326 CTGAACGACGTTGGTGTCTC 58.871 55.000 19.60 2.00 36.71 3.36
726 788 0.541863 AGGAAAGGGACAGCCGTATG 59.458 55.000 0.00 0.00 33.83 2.39
761 823 1.293498 CACCAAGGGGACAGAGACG 59.707 63.158 0.00 0.00 38.05 4.18
808 870 1.830279 TATATAGGCGACCGAGGGTG 58.170 55.000 0.00 0.00 35.25 4.61
809 871 2.560105 GTTTATATAGGCGACCGAGGGT 59.440 50.000 0.00 0.00 39.44 4.34
886 948 2.805353 CGTGCGTCGTGCTAGCTT 60.805 61.111 17.23 0.00 46.63 3.74
939 1001 1.583054 CTGGCTCTGTTTATACCGCC 58.417 55.000 0.00 0.00 38.01 6.13
1058 1120 1.445716 CCCGGAGTAGAGCCAGTACG 61.446 65.000 0.73 0.00 0.00 3.67
1222 1284 2.481952 GACTAACCTTGAGCACAGCAAG 59.518 50.000 0.00 0.00 41.77 4.01
1246 1308 1.018226 AATGCAGCTCAGACGCACTC 61.018 55.000 0.00 0.00 38.73 3.51
1327 1389 8.134895 TGACCAAATCATGTAAAACAAGAAGAC 58.865 33.333 0.00 0.00 29.13 3.01
1340 1402 6.547141 TCTTTTCTTGAGTGACCAAATCATGT 59.453 34.615 0.00 0.00 40.28 3.21
1518 1587 5.652452 AGTACATGCCTTCATTTTACCTTCC 59.348 40.000 0.00 0.00 0.00 3.46
1584 1653 0.808060 GCGGGCTCTTGTCTCTTAGC 60.808 60.000 0.00 0.00 0.00 3.09
1586 1655 0.614979 AGGCGGGCTCTTGTCTCTTA 60.615 55.000 0.00 0.00 0.00 2.10
1742 1855 4.824289 TCCTTCACGTAAAATAGACCACC 58.176 43.478 0.00 0.00 0.00 4.61
1748 1861 5.340439 ACTCCCTCCTTCACGTAAAATAG 57.660 43.478 0.00 0.00 0.00 1.73
1749 1862 5.954150 AGTACTCCCTCCTTCACGTAAAATA 59.046 40.000 0.00 0.00 0.00 1.40
1838 1982 5.697067 AGTACTCCCTCCTTCATGTAGTAG 58.303 45.833 0.00 0.00 0.00 2.57
1842 1986 6.532119 AGATAGTACTCCCTCCTTCATGTA 57.468 41.667 0.00 0.00 0.00 2.29
1843 1987 5.390387 GAGATAGTACTCCCTCCTTCATGT 58.610 45.833 0.00 0.00 0.00 3.21
1844 1988 4.457603 CGAGATAGTACTCCCTCCTTCATG 59.542 50.000 14.97 0.00 33.83 3.07
1845 1989 4.105057 ACGAGATAGTACTCCCTCCTTCAT 59.895 45.833 14.97 0.00 33.83 2.57
1846 1990 3.458857 ACGAGATAGTACTCCCTCCTTCA 59.541 47.826 14.97 0.00 33.83 3.02
1847 1991 3.816523 CACGAGATAGTACTCCCTCCTTC 59.183 52.174 14.97 1.30 33.83 3.46
1848 1992 3.822940 CACGAGATAGTACTCCCTCCTT 58.177 50.000 14.97 4.18 33.83 3.36
1849 1993 2.487625 GCACGAGATAGTACTCCCTCCT 60.488 54.545 14.97 5.10 33.83 3.69
1850 1994 1.881324 GCACGAGATAGTACTCCCTCC 59.119 57.143 14.97 2.78 33.83 4.30
1851 1995 2.809696 GAGCACGAGATAGTACTCCCTC 59.190 54.545 0.00 6.52 33.83 4.30
1852 1996 2.440253 AGAGCACGAGATAGTACTCCCT 59.560 50.000 0.00 0.00 35.63 4.20
1853 1997 2.853705 AGAGCACGAGATAGTACTCCC 58.146 52.381 0.00 0.00 35.63 4.30
1854 1998 3.747529 GGTAGAGCACGAGATAGTACTCC 59.252 52.174 0.00 0.00 35.63 3.85
1855 1999 3.429543 CGGTAGAGCACGAGATAGTACTC 59.570 52.174 0.00 0.00 35.34 2.59
1856 2000 3.391965 CGGTAGAGCACGAGATAGTACT 58.608 50.000 0.00 0.00 0.00 2.73
1857 2001 2.479656 CCGGTAGAGCACGAGATAGTAC 59.520 54.545 0.00 0.00 0.00 2.73
1858 2002 2.103771 ACCGGTAGAGCACGAGATAGTA 59.896 50.000 4.49 0.00 0.00 1.82
1859 2003 1.134159 ACCGGTAGAGCACGAGATAGT 60.134 52.381 4.49 0.00 0.00 2.12
1860 2004 1.264557 CACCGGTAGAGCACGAGATAG 59.735 57.143 6.87 0.00 0.00 2.08
1901 2209 5.063564 TGTGGAATTTTGTGCGGTTTTTAAC 59.936 36.000 0.00 0.00 0.00 2.01
1957 2265 0.815734 GGAGCGAGCTACTTACCACA 59.184 55.000 0.00 0.00 0.00 4.17
1960 2268 0.756070 AGGGGAGCGAGCTACTTACC 60.756 60.000 7.31 0.21 0.00 2.85
2215 3424 3.363378 CGTATTCGGCGAGTAGTAATCGT 60.363 47.826 19.87 3.89 42.13 3.73
2229 3438 8.348983 ACAAGAACAGATTAATACGTATTCGG 57.651 34.615 23.51 13.11 41.85 4.30
2276 3489 7.559486 TGTCAGCTGAATATACAAGAACATCT 58.441 34.615 20.19 0.00 0.00 2.90
2278 3491 6.765036 CCTGTCAGCTGAATATACAAGAACAT 59.235 38.462 20.19 0.00 0.00 2.71
2850 4065 6.625960 CGTGATCTTTAGTGATCTTGACCTGA 60.626 42.308 6.15 0.00 42.30 3.86
2864 4079 4.537965 AGTATGCTACGCGTGATCTTTAG 58.462 43.478 24.59 10.56 0.00 1.85
2919 4144 1.342819 CATAGACCAGCCCTAGACTGC 59.657 57.143 7.11 0.00 33.65 4.40
2922 4147 2.089600 ACCATAGACCAGCCCTAGAC 57.910 55.000 0.00 0.00 0.00 2.59
2983 4208 9.494271 GCATGATTTGTATGAAACTAGGAGATA 57.506 33.333 0.00 0.00 0.00 1.98
2984 4209 7.994911 TGCATGATTTGTATGAAACTAGGAGAT 59.005 33.333 0.00 0.00 0.00 2.75
2985 4210 7.337938 TGCATGATTTGTATGAAACTAGGAGA 58.662 34.615 0.00 0.00 0.00 3.71
2986 4211 7.558161 TGCATGATTTGTATGAAACTAGGAG 57.442 36.000 0.00 0.00 0.00 3.69
2987 4212 7.936496 TTGCATGATTTGTATGAAACTAGGA 57.064 32.000 0.00 0.00 0.00 2.94
2988 4213 8.984891 TTTTGCATGATTTGTATGAAACTAGG 57.015 30.769 0.00 0.00 0.00 3.02
2989 4214 9.630098 ACTTTTGCATGATTTGTATGAAACTAG 57.370 29.630 0.00 0.00 0.00 2.57
2990 4215 9.979578 AACTTTTGCATGATTTGTATGAAACTA 57.020 25.926 0.00 0.00 0.00 2.24
2991 4216 8.891671 AACTTTTGCATGATTTGTATGAAACT 57.108 26.923 0.00 0.00 0.00 2.66
2992 4217 9.934190 AAAACTTTTGCATGATTTGTATGAAAC 57.066 25.926 0.00 0.00 0.00 2.78
3020 4245 8.975439 CGACAAAACTTAGTTTAGACTACATGT 58.025 33.333 10.97 8.74 38.07 3.21
3021 4246 8.975439 ACGACAAAACTTAGTTTAGACTACATG 58.025 33.333 10.97 5.68 38.07 3.21
3022 4247 9.538508 AACGACAAAACTTAGTTTAGACTACAT 57.461 29.630 10.97 0.00 38.07 2.29
3023 4248 8.810427 CAACGACAAAACTTAGTTTAGACTACA 58.190 33.333 10.97 0.00 38.07 2.74
3024 4249 8.271487 CCAACGACAAAACTTAGTTTAGACTAC 58.729 37.037 10.97 0.36 38.07 2.73
3025 4250 8.196771 TCCAACGACAAAACTTAGTTTAGACTA 58.803 33.333 10.97 0.00 34.43 2.59
3039 4264 3.985279 CGTAGACATCTCCAACGACAAAA 59.015 43.478 0.00 0.00 35.66 2.44
3042 4267 2.429478 TCGTAGACATCTCCAACGACA 58.571 47.619 2.10 0.00 37.63 4.35
3058 4283 2.182284 CCCGGCATGAACGTCGTA 59.818 61.111 0.00 0.00 30.25 3.43
3148 4385 3.157252 GCAGGAGGCGGAGATGGA 61.157 66.667 0.00 0.00 0.00 3.41
3199 4444 5.011533 AGACGATCCTTGATTTCCTCCTATG 59.988 44.000 0.00 0.00 0.00 2.23
3201 4446 4.342378 CAGACGATCCTTGATTTCCTCCTA 59.658 45.833 0.00 0.00 0.00 2.94
3202 4447 3.133721 CAGACGATCCTTGATTTCCTCCT 59.866 47.826 0.00 0.00 0.00 3.69
3230 4475 2.782222 GCCGTGGATCTACAGGCGA 61.782 63.158 22.00 0.00 38.28 5.54
3270 4516 2.203998 AGGTGGTGGTGGAGGAGG 60.204 66.667 0.00 0.00 0.00 4.30
3272 4518 2.203938 GGAGGTGGTGGTGGAGGA 60.204 66.667 0.00 0.00 0.00 3.71
3273 4519 2.203998 AGGAGGTGGTGGTGGAGG 60.204 66.667 0.00 0.00 0.00 4.30
3275 4521 2.203938 GGAGGAGGTGGTGGTGGA 60.204 66.667 0.00 0.00 0.00 4.02
3276 4522 2.203998 AGGAGGAGGTGGTGGTGG 60.204 66.667 0.00 0.00 0.00 4.61
3278 4524 2.122954 GGAGGAGGAGGTGGTGGT 59.877 66.667 0.00 0.00 0.00 4.16
3281 4534 2.781406 GGAGGAGGAGGAGGTGGT 59.219 66.667 0.00 0.00 0.00 4.16
3283 4536 1.382420 CAGGGAGGAGGAGGAGGTG 60.382 68.421 0.00 0.00 0.00 4.00
3284 4537 1.864559 ACAGGGAGGAGGAGGAGGT 60.865 63.158 0.00 0.00 0.00 3.85
3299 4561 0.248843 GAGGAGGAGCACAAGGACAG 59.751 60.000 0.00 0.00 0.00 3.51
3300 4562 1.194781 GGAGGAGGAGCACAAGGACA 61.195 60.000 0.00 0.00 0.00 4.02
3306 4568 1.000993 GAGGAGGAGGAGGAGCACA 59.999 63.158 0.00 0.00 0.00 4.57
3309 4571 2.520741 CGGAGGAGGAGGAGGAGC 60.521 72.222 0.00 0.00 0.00 4.70
3335 4600 2.764572 CCACGGTCCTACCTCTTAATGT 59.235 50.000 0.00 0.00 35.66 2.71
3339 4604 0.333993 AGCCACGGTCCTACCTCTTA 59.666 55.000 0.00 0.00 35.66 2.10
3340 4605 0.333993 TAGCCACGGTCCTACCTCTT 59.666 55.000 0.00 0.00 35.66 2.85
3341 4606 0.556747 ATAGCCACGGTCCTACCTCT 59.443 55.000 0.00 0.00 35.66 3.69
3349 4614 1.972660 AAGCCCAGATAGCCACGGTC 61.973 60.000 0.00 0.00 0.00 4.79
3350 4615 1.972660 GAAGCCCAGATAGCCACGGT 61.973 60.000 0.00 0.00 0.00 4.83
3354 4619 1.522092 CACGAAGCCCAGATAGCCA 59.478 57.895 0.00 0.00 0.00 4.75
3405 4670 4.065321 ACTAATCTAATGCTTGAGCGCT 57.935 40.909 11.27 11.27 45.83 5.92
3412 4677 4.572389 CGCCAGTCAACTAATCTAATGCTT 59.428 41.667 0.00 0.00 0.00 3.91
3413 4678 4.122776 CGCCAGTCAACTAATCTAATGCT 58.877 43.478 0.00 0.00 0.00 3.79
3423 4688 2.048597 CACGCCGCCAGTCAACTA 60.049 61.111 0.00 0.00 0.00 2.24
3443 4717 5.186198 CCACTTTTTGGTAGTAGCTATGCT 58.814 41.667 0.00 0.00 41.10 3.79
3459 4733 4.612412 TCGCCGTCCGCCACTTTT 62.612 61.111 0.00 0.00 36.73 2.27
3521 4820 2.119484 CTGGCACCGAAACCCTACCA 62.119 60.000 0.00 0.00 0.00 3.25
3545 4844 4.749785 GCCCTAGCCAGAATATTTAAGCCA 60.750 45.833 0.00 0.00 0.00 4.75
3556 4855 1.956629 GCGTAGTGCCCTAGCCAGAA 61.957 60.000 0.00 0.00 38.69 3.02
3557 4856 2.423898 GCGTAGTGCCCTAGCCAGA 61.424 63.158 0.00 0.00 38.69 3.86
3559 4858 3.833645 CGCGTAGTGCCCTAGCCA 61.834 66.667 0.00 0.00 42.08 4.75
3618 4917 1.742880 GAAAACCCGGCGGTAGGAC 60.743 63.158 26.32 9.46 43.71 3.85
3621 4920 3.493440 GCGAAAACCCGGCGGTAG 61.493 66.667 26.32 13.26 43.71 3.18
3636 4935 2.098298 CCCACAAGAAATCGCGCG 59.902 61.111 26.76 26.76 0.00 6.86
3638 4937 1.644786 GGGTCCCACAAGAAATCGCG 61.645 60.000 1.78 0.00 0.00 5.87
3640 4939 2.017049 GATGGGTCCCACAAGAAATCG 58.983 52.381 14.57 0.00 35.80 3.34
3688 4988 0.696485 TTTAAGCGGATAGGGGGCCT 60.696 55.000 0.84 0.00 37.71 5.19
3690 4990 2.287977 AATTTAAGCGGATAGGGGGC 57.712 50.000 0.00 0.00 0.00 5.80
3691 4991 3.320826 CCAAAATTTAAGCGGATAGGGGG 59.679 47.826 0.00 0.00 0.00 5.40
3696 4996 5.906113 TTCAGCCAAAATTTAAGCGGATA 57.094 34.783 13.33 5.33 29.71 2.59
3700 5000 6.418819 CCTCATATTCAGCCAAAATTTAAGCG 59.581 38.462 6.69 3.48 0.00 4.68
3701 5001 6.703165 CCCTCATATTCAGCCAAAATTTAAGC 59.297 38.462 4.57 4.57 0.00 3.09
3705 5005 5.032170 ACCCCTCATATTCAGCCAAAATTT 58.968 37.500 0.00 0.00 0.00 1.82
3706 5006 4.406649 CACCCCTCATATTCAGCCAAAATT 59.593 41.667 0.00 0.00 0.00 1.82
3711 5024 0.183492 GCACCCCTCATATTCAGCCA 59.817 55.000 0.00 0.00 0.00 4.75
3740 5053 0.178975 AAACGGGCCTCAAATGACCA 60.179 50.000 0.84 0.00 0.00 4.02
3743 5056 3.426787 TCTTAAACGGGCCTCAAATGA 57.573 42.857 0.84 0.00 0.00 2.57
3786 5099 0.674269 GGGCGGTCATTTGACGGTAA 60.674 55.000 16.50 0.00 45.65 2.85
3788 5101 2.359478 GGGCGGTCATTTGACGGT 60.359 61.111 16.50 0.00 45.65 4.83
3789 5102 3.496131 CGGGCGGTCATTTGACGG 61.496 66.667 12.42 12.42 45.65 4.79
3791 5104 3.810896 GGCGGGCGGTCATTTGAC 61.811 66.667 1.99 1.99 44.04 3.18
3792 5105 4.028490 AGGCGGGCGGTCATTTGA 62.028 61.111 0.00 0.00 0.00 2.69
3793 5106 3.814268 CAGGCGGGCGGTCATTTG 61.814 66.667 0.00 0.00 0.00 2.32
3821 5139 3.074412 CAGCCGGACATCTTAAACTTGT 58.926 45.455 5.05 0.00 0.00 3.16
3823 5141 3.418684 ACAGCCGGACATCTTAAACTT 57.581 42.857 5.05 0.00 0.00 2.66
3824 5142 3.767673 TCTACAGCCGGACATCTTAAACT 59.232 43.478 5.05 0.00 0.00 2.66
3829 5147 1.202580 GCATCTACAGCCGGACATCTT 60.203 52.381 5.05 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.