Multiple sequence alignment - TraesCS3D01G238900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G238900 chr3D 100.000 2898 0 0 1 2898 330478045 330475148 0.000000e+00 5352.0
1 TraesCS3D01G238900 chr3D 91.574 1531 69 15 475 1978 57606890 57608387 0.000000e+00 2058.0
2 TraesCS3D01G238900 chr3D 84.821 1311 125 29 659 1936 571760507 571759238 0.000000e+00 1251.0
3 TraesCS3D01G238900 chr3D 96.403 278 8 2 210 487 57606497 57606772 9.460000e-125 457.0
4 TraesCS3D01G238900 chr3D 92.787 305 13 5 190 487 6727697 6727999 1.600000e-117 433.0
5 TraesCS3D01G238900 chr3D 98.020 101 2 0 630 730 229434308 229434208 2.970000e-40 176.0
6 TraesCS3D01G238900 chr3D 100.000 61 0 0 115 175 57606443 57606503 2.360000e-21 113.0
7 TraesCS3D01G238900 chr3D 100.000 37 0 0 11 47 37621187 37621223 5.180000e-08 69.4
8 TraesCS3D01G238900 chr6D 95.346 2428 103 4 475 2896 46527570 46525147 0.000000e+00 3849.0
9 TraesCS3D01G238900 chr6D 94.659 2097 97 7 810 2896 452662260 452664351 0.000000e+00 3238.0
10 TraesCS3D01G238900 chr6D 97.137 489 12 2 1 487 46528171 46527683 0.000000e+00 824.0
11 TraesCS3D01G238900 chr6D 90.566 53 2 2 630 682 202663137 202663186 1.860000e-07 67.6
12 TraesCS3D01G238900 chr6D 90.566 53 2 2 630 682 202663209 202663258 1.860000e-07 67.6
13 TraesCS3D01G238900 chr6D 95.349 43 1 1 712 753 452662063 452662105 1.860000e-07 67.6
14 TraesCS3D01G238900 chr6D 100.000 34 0 0 718 751 446391721 446391688 2.410000e-06 63.9
15 TraesCS3D01G238900 chr1D 95.549 2269 94 4 630 2896 417105799 417108062 0.000000e+00 3624.0
16 TraesCS3D01G238900 chr1D 94.090 2098 106 10 810 2896 336737274 336735184 0.000000e+00 3171.0
17 TraesCS3D01G238900 chr1D 84.568 162 12 8 13 171 417105507 417105658 6.470000e-32 148.0
18 TraesCS3D01G238900 chr1D 93.137 102 3 3 533 634 417105665 417105762 2.330000e-31 147.0
19 TraesCS3D01G238900 chr1D 95.349 43 1 1 712 753 336737471 336737429 1.860000e-07 67.6
20 TraesCS3D01G238900 chr1D 100.000 34 0 0 718 751 463801081 463801048 2.410000e-06 63.9
21 TraesCS3D01G238900 chr4D 93.588 2433 108 11 475 2896 222630387 222627992 0.000000e+00 3585.0
22 TraesCS3D01G238900 chr4D 93.174 1377 76 11 1534 2896 261238296 261236924 0.000000e+00 2006.0
23 TraesCS3D01G238900 chr4D 97.137 489 12 2 1 487 222630988 222630500 0.000000e+00 824.0
24 TraesCS3D01G238900 chr4D 96.774 217 6 1 210 426 125861612 125861397 7.630000e-96 361.0
25 TraesCS3D01G238900 chr4D 96.774 217 6 1 210 426 125872377 125872592 7.630000e-96 361.0
26 TraesCS3D01G238900 chr4D 96.774 217 6 1 210 426 125937205 125936990 7.630000e-96 361.0
27 TraesCS3D01G238900 chr4D 93.182 88 4 2 1 86 239801114 239801027 8.430000e-26 128.0
28 TraesCS3D01G238900 chr4D 100.000 61 0 0 115 175 125872323 125872383 2.360000e-21 113.0
29 TraesCS3D01G238900 chr4D 100.000 61 0 0 115 175 125937259 125937199 2.360000e-21 113.0
30 TraesCS3D01G238900 chr4D 98.387 62 0 1 114 175 125861666 125861606 1.100000e-19 108.0
31 TraesCS3D01G238900 chr4D 84.416 77 4 5 611 682 196903930 196904003 5.180000e-08 69.4
32 TraesCS3D01G238900 chr2D 93.565 2098 120 9 810 2896 239244439 239246532 0.000000e+00 3112.0
33 TraesCS3D01G238900 chr2D 93.744 1998 92 8 924 2896 397123831 397125820 0.000000e+00 2966.0
34 TraesCS3D01G238900 chr2D 96.480 483 15 2 1 482 397122795 397123276 0.000000e+00 797.0
35 TraesCS3D01G238900 chr2D 96.429 224 7 1 630 852 397123590 397123813 4.560000e-98 368.0
36 TraesCS3D01G238900 chr2D 90.278 216 11 9 475 683 397123394 397123606 1.020000e-69 274.0
37 TraesCS3D01G238900 chr2D 94.340 159 9 0 630 788 645241422 645241264 8.020000e-61 244.0
38 TraesCS3D01G238900 chr2D 90.210 143 2 2 852 994 648988754 648988884 2.970000e-40 176.0
39 TraesCS3D01G238900 chr5D 93.363 2019 102 7 905 2896 384518892 384516879 0.000000e+00 2957.0
40 TraesCS3D01G238900 chr5D 91.659 2110 117 18 828 2896 401772744 401774835 0.000000e+00 2867.0
41 TraesCS3D01G238900 chr5D 97.342 489 11 2 1 487 16497145 16496657 0.000000e+00 830.0
42 TraesCS3D01G238900 chr5D 96.250 160 6 0 475 634 16496544 16496385 2.210000e-66 263.0
43 TraesCS3D01G238900 chr5D 97.980 99 2 0 630 728 401772604 401772702 3.840000e-39 172.0
44 TraesCS3D01G238900 chr5D 95.146 103 5 0 630 732 29809707 29809605 2.310000e-36 163.0
45 TraesCS3D01G238900 chr5D 100.000 37 0 0 11 47 29810476 29810440 5.180000e-08 69.4
46 TraesCS3D01G238900 chr5D 100.000 37 0 0 715 751 313520239 313520203 5.180000e-08 69.4
47 TraesCS3D01G238900 chr5D 100.000 35 0 0 600 634 20273180 20273146 6.700000e-07 65.8
48 TraesCS3D01G238900 chr5D 97.297 37 1 0 137 173 447391754 447391790 2.410000e-06 63.9
49 TraesCS3D01G238900 chr4A 92.396 1749 78 14 542 2265 433610226 433608508 0.000000e+00 2442.0
50 TraesCS3D01G238900 chr4A 85.089 1234 114 43 764 1936 24458473 24459697 0.000000e+00 1195.0
51 TraesCS3D01G238900 chr4A 97.407 270 6 1 210 479 433610674 433610406 2.630000e-125 459.0
52 TraesCS3D01G238900 chr4A 95.062 81 3 1 1 80 694169234 694169314 3.030000e-25 126.0
53 TraesCS3D01G238900 chr4A 95.062 81 3 1 1 80 723948777 723948697 3.030000e-25 126.0
54 TraesCS3D01G238900 chr7D 91.089 1818 100 11 475 2264 103532205 103533988 0.000000e+00 2403.0
55 TraesCS3D01G238900 chr7D 95.620 274 11 1 215 487 103531819 103532092 3.430000e-119 438.0
56 TraesCS3D01G238900 chr7D 93.711 159 10 0 630 788 17944456 17944298 3.730000e-59 239.0
57 TraesCS3D01G238900 chr7D 97.810 137 3 0 498 634 17944646 17944510 1.340000e-58 237.0
58 TraesCS3D01G238900 chr7D 98.182 55 0 1 115 169 103531762 103531815 8.550000e-16 95.3
59 TraesCS3D01G238900 chr7A 92.308 1443 93 6 828 2265 734436642 734438071 0.000000e+00 2034.0
60 TraesCS3D01G238900 chr3B 92.308 1443 94 5 828 2265 787077789 787079219 0.000000e+00 2034.0
61 TraesCS3D01G238900 chr3B 88.187 855 52 15 749 1583 636097936 636097111 0.000000e+00 974.0
62 TraesCS3D01G238900 chr3B 94.318 88 3 2 1 86 329535445 329535358 1.810000e-27 134.0
63 TraesCS3D01G238900 chr7B 91.672 1441 102 7 831 2265 719338877 719337449 0.000000e+00 1980.0
64 TraesCS3D01G238900 chr7B 96.296 81 2 1 1 80 551207826 551207906 6.520000e-27 132.0
65 TraesCS3D01G238900 chr6B 91.866 1254 68 8 475 1724 518297685 518298908 0.000000e+00 1720.0
66 TraesCS3D01G238900 chr6B 96.296 81 2 1 1 80 703606171 703606251 6.520000e-27 132.0
67 TraesCS3D01G238900 chr6B 96.296 81 2 1 1 80 719835098 719835178 6.520000e-27 132.0
68 TraesCS3D01G238900 chr2B 87.075 1354 126 24 630 1936 124027059 124025708 0.000000e+00 1485.0
69 TraesCS3D01G238900 chr2B 96.338 355 13 0 475 829 539865310 539865664 4.160000e-163 584.0
70 TraesCS3D01G238900 chr2B 95.730 281 11 1 208 487 539864917 539865197 4.400000e-123 451.0
71 TraesCS3D01G238900 chr1B 87.204 1266 104 19 751 1992 516774582 516775813 0.000000e+00 1387.0
72 TraesCS3D01G238900 chr1B 95.062 81 3 1 1 80 56402202 56402282 3.030000e-25 126.0
73 TraesCS3D01G238900 chr5B 85.375 547 27 11 209 705 345206817 345206274 4.280000e-143 518.0
74 TraesCS3D01G238900 chr5B 96.296 81 2 1 1 80 449633461 449633541 6.520000e-27 132.0
75 TraesCS3D01G238900 chrUn 98.500 200 3 0 209 408 35192365 35192166 1.280000e-93 353.0
76 TraesCS3D01G238900 chrUn 98.500 200 3 0 209 408 236924957 236925156 1.280000e-93 353.0
77 TraesCS3D01G238900 chrUn 96.226 159 5 1 250 408 264980973 264981130 2.860000e-65 259.0
78 TraesCS3D01G238900 chrUn 94.969 159 7 1 250 408 290561517 290561360 6.200000e-62 248.0
79 TraesCS3D01G238900 chrUn 91.124 169 13 2 553 721 35191890 35191724 8.080000e-56 228.0
80 TraesCS3D01G238900 chrUn 94.000 150 9 0 553 702 236925432 236925581 8.080000e-56 228.0
81 TraesCS3D01G238900 chrUn 88.667 150 7 1 553 702 264981166 264981305 1.070000e-39 174.0
82 TraesCS3D01G238900 chrUn 88.235 153 8 1 553 705 356709726 356709584 1.070000e-39 174.0
83 TraesCS3D01G238900 chrUn 95.588 68 3 0 661 728 38465246 38465313 3.050000e-20 110.0
84 TraesCS3D01G238900 chrUn 98.387 62 1 0 347 408 356709823 356709762 3.050000e-20 110.0
85 TraesCS3D01G238900 chr3A 89.338 272 14 4 231 487 13520253 13519982 7.740000e-86 327.0
86 TraesCS3D01G238900 chr3A 88.785 214 18 6 475 683 5992913 5992701 1.030000e-64 257.0
87 TraesCS3D01G238900 chr5A 94.253 174 9 1 630 803 235650206 235650378 6.160000e-67 265.0
88 TraesCS3D01G238900 chr5A 94.904 157 8 0 475 631 384013963 384014119 2.230000e-61 246.0
89 TraesCS3D01G238900 chr4B 96.429 140 5 0 495 634 368725484 368725623 6.250000e-57 231.0
90 TraesCS3D01G238900 chr4B 88.832 197 10 9 495 683 644594278 644594470 6.250000e-57 231.0
91 TraesCS3D01G238900 chr4B 94.000 150 9 0 553 702 6822658 6822807 8.080000e-56 228.0
92 TraesCS3D01G238900 chr4B 98.592 71 1 0 3 73 505039293 505039223 3.030000e-25 126.0
93 TraesCS3D01G238900 chr4B 93.827 81 4 1 1 80 613127900 613127980 1.410000e-23 121.0
94 TraesCS3D01G238900 chr4B 90.123 81 2 3 1 80 200931485 200931560 1.840000e-17 100.0
95 TraesCS3D01G238900 chr6A 98.630 73 1 0 482 554 136655290 136655362 2.340000e-26 130.0
96 TraesCS3D01G238900 chr6A 95.062 81 3 1 1 80 11933956 11933876 3.030000e-25 126.0
97 TraesCS3D01G238900 chr6A 97.260 73 2 0 482 554 529359811 529359883 1.090000e-24 124.0
98 TraesCS3D01G238900 chr1A 93.827 81 4 1 1 80 55005597 55005517 1.410000e-23 121.0
99 TraesCS3D01G238900 chr1A 95.890 73 3 0 656 728 7948040 7948112 5.070000e-23 119.0
100 TraesCS3D01G238900 chr1A 91.489 47 1 2 1 46 7947042 7947086 8.670000e-06 62.1
101 TraesCS3D01G238900 chr1A 90.000 50 1 3 1 49 539852016 539851970 8.670000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G238900 chr3D 330475148 330478045 2897 True 5352.000000 5352 100.000000 1 2898 1 chr3D.!!$R2 2897
1 TraesCS3D01G238900 chr3D 571759238 571760507 1269 True 1251.000000 1251 84.821000 659 1936 1 chr3D.!!$R3 1277
2 TraesCS3D01G238900 chr3D 57606443 57608387 1944 False 876.000000 2058 95.992333 115 1978 3 chr3D.!!$F3 1863
3 TraesCS3D01G238900 chr6D 46525147 46528171 3024 True 2336.500000 3849 96.241500 1 2896 2 chr6D.!!$R2 2895
4 TraesCS3D01G238900 chr6D 452662063 452664351 2288 False 1652.800000 3238 95.004000 712 2896 2 chr6D.!!$F2 2184
5 TraesCS3D01G238900 chr1D 336735184 336737471 2287 True 1619.300000 3171 94.719500 712 2896 2 chr1D.!!$R2 2184
6 TraesCS3D01G238900 chr1D 417105507 417108062 2555 False 1306.333333 3624 91.084667 13 2896 3 chr1D.!!$F1 2883
7 TraesCS3D01G238900 chr4D 222627992 222630988 2996 True 2204.500000 3585 95.362500 1 2896 2 chr4D.!!$R5 2895
8 TraesCS3D01G238900 chr4D 261236924 261238296 1372 True 2006.000000 2006 93.174000 1534 2896 1 chr4D.!!$R2 1362
9 TraesCS3D01G238900 chr2D 239244439 239246532 2093 False 3112.000000 3112 93.565000 810 2896 1 chr2D.!!$F1 2086
10 TraesCS3D01G238900 chr2D 397122795 397125820 3025 False 1101.250000 2966 94.232750 1 2896 4 chr2D.!!$F3 2895
11 TraesCS3D01G238900 chr5D 384516879 384518892 2013 True 2957.000000 2957 93.363000 905 2896 1 chr5D.!!$R3 1991
12 TraesCS3D01G238900 chr5D 401772604 401774835 2231 False 1519.500000 2867 94.819500 630 2896 2 chr5D.!!$F2 2266
13 TraesCS3D01G238900 chr5D 16496385 16497145 760 True 546.500000 830 96.796000 1 634 2 chr5D.!!$R4 633
14 TraesCS3D01G238900 chr4A 433608508 433610674 2166 True 1450.500000 2442 94.901500 210 2265 2 chr4A.!!$R2 2055
15 TraesCS3D01G238900 chr4A 24458473 24459697 1224 False 1195.000000 1195 85.089000 764 1936 1 chr4A.!!$F1 1172
16 TraesCS3D01G238900 chr7D 103531762 103533988 2226 False 978.766667 2403 94.963667 115 2264 3 chr7D.!!$F1 2149
17 TraesCS3D01G238900 chr7A 734436642 734438071 1429 False 2034.000000 2034 92.308000 828 2265 1 chr7A.!!$F1 1437
18 TraesCS3D01G238900 chr3B 787077789 787079219 1430 False 2034.000000 2034 92.308000 828 2265 1 chr3B.!!$F1 1437
19 TraesCS3D01G238900 chr3B 636097111 636097936 825 True 974.000000 974 88.187000 749 1583 1 chr3B.!!$R2 834
20 TraesCS3D01G238900 chr7B 719337449 719338877 1428 True 1980.000000 1980 91.672000 831 2265 1 chr7B.!!$R1 1434
21 TraesCS3D01G238900 chr6B 518297685 518298908 1223 False 1720.000000 1720 91.866000 475 1724 1 chr6B.!!$F1 1249
22 TraesCS3D01G238900 chr2B 124025708 124027059 1351 True 1485.000000 1485 87.075000 630 1936 1 chr2B.!!$R1 1306
23 TraesCS3D01G238900 chr2B 539864917 539865664 747 False 517.500000 584 96.034000 208 829 2 chr2B.!!$F1 621
24 TraesCS3D01G238900 chr1B 516774582 516775813 1231 False 1387.000000 1387 87.204000 751 1992 1 chr1B.!!$F2 1241
25 TraesCS3D01G238900 chr5B 345206274 345206817 543 True 518.000000 518 85.375000 209 705 1 chr5B.!!$R1 496
26 TraesCS3D01G238900 chrUn 35191724 35192365 641 True 290.500000 353 94.812000 209 721 2 chrUn.!!$R2 512
27 TraesCS3D01G238900 chrUn 236924957 236925581 624 False 290.500000 353 96.250000 209 702 2 chrUn.!!$F2 493

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
288 294 4.392138 GCTTGGTTTCCATGTAGTACTGTC 59.608 45.833 5.39 0.0 31.53 3.51 F
1422 1951 0.108377 CCGCATGTACTACCAGCACA 60.108 55.000 0.00 0.0 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1488 2017 0.660488 TGTGAACATGGTGTTGTCGC 59.340 50.000 0.0 0.0 41.28 5.19 R
2590 3438 1.229082 TGACCCTCCTTGTAGCCGT 60.229 57.895 0.0 0.0 0.00 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 63 6.730507 AGGGTTTGATTAGTGGGAATTGATTT 59.269 34.615 0.00 0.00 0.00 2.17
288 294 4.392138 GCTTGGTTTCCATGTAGTACTGTC 59.608 45.833 5.39 0.00 31.53 3.51
546 840 8.530311 TGTTCAGATATGTTTATGCCAATGTTT 58.470 29.630 0.00 0.00 0.00 2.83
555 849 7.950512 TGTTTATGCCAATGTTTAGATATGGG 58.049 34.615 0.00 0.00 0.00 4.00
963 1471 6.938698 TGTCCAGTCCTTTATGGTAACTTA 57.061 37.500 0.00 0.00 37.84 2.24
1077 1602 7.560368 GCAGTAGGCAGGTATATTTATCATCT 58.440 38.462 0.00 0.00 43.97 2.90
1149 1678 0.603569 CACTACTTGACCCTCGCTGT 59.396 55.000 0.00 0.00 0.00 4.40
1390 1919 1.459592 GTTCACCGTGAAGATGTTCGG 59.540 52.381 14.35 1.66 46.98 4.30
1422 1951 0.108377 CCGCATGTACTACCAGCACA 60.108 55.000 0.00 0.00 0.00 4.57
1488 2017 1.153549 GCTTCCTCTACCAGCACGG 60.154 63.158 0.00 0.00 42.50 4.94
1524 2056 2.168106 TCACACTTTGTTGCATTTGGCT 59.832 40.909 0.00 0.00 45.15 4.75
1640 2400 2.890808 GGATGACGACCTTGCTATGA 57.109 50.000 0.00 0.00 0.00 2.15
1648 2435 0.106519 ACCTTGCTATGATGGTGGCC 60.107 55.000 0.00 0.00 0.00 5.36
1867 2688 2.104928 CGCCACTCTGAGCGCATA 59.895 61.111 11.47 0.00 46.50 3.14
2085 2921 8.657387 TTCAGTTTGGTAATTGATGGGAATTA 57.343 30.769 0.00 0.00 31.15 1.40
2207 3043 1.729586 TGACTCAAACCCTAGCCACT 58.270 50.000 0.00 0.00 0.00 4.00
2211 3047 1.347707 CTCAAACCCTAGCCACTGACA 59.652 52.381 0.00 0.00 0.00 3.58
2414 3255 4.074970 ACGAAGATTCATGGCTTTCAAGT 58.925 39.130 0.00 0.00 0.00 3.16
2415 3256 4.083110 ACGAAGATTCATGGCTTTCAAGTG 60.083 41.667 0.00 0.00 0.00 3.16
2458 3300 4.549599 CGCATTCGTTGAATAGTTTGTGAC 59.450 41.667 0.00 0.00 30.44 3.67
2758 3606 0.966179 AACCGGCTGGAATTTGAACC 59.034 50.000 21.41 0.00 39.21 3.62
2877 3726 1.909781 AAACCCTAGCCACGGACGA 60.910 57.895 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 103 4.982241 ATTTGAACAGAGGAAGGAGTCA 57.018 40.909 0.00 0.00 0.00 3.41
288 294 3.833070 AGTCAAACCTACACTCCACTAGG 59.167 47.826 0.00 0.00 36.35 3.02
546 840 6.048684 TCCCTATCTAAACCCACCCATATCTA 59.951 42.308 0.00 0.00 0.00 1.98
555 849 8.218488 ACAGAAAATATCCCTATCTAAACCCAC 58.782 37.037 0.00 0.00 0.00 4.61
657 1033 6.802608 TCTACTATAAATGGACCAGAACACG 58.197 40.000 0.00 0.00 0.00 4.49
757 1154 2.494471 CAGCACCCATCAACATCAACAT 59.506 45.455 0.00 0.00 0.00 2.71
1077 1602 6.550481 AGCAGAGTGATGATAAAGAGATGAGA 59.450 38.462 0.00 0.00 0.00 3.27
1149 1678 1.352083 AACTTGTCAGGCAGCCTCTA 58.648 50.000 12.53 0.00 0.00 2.43
1281 1810 3.470888 CCAGTCGGGCCCTAGGTG 61.471 72.222 22.43 11.65 0.00 4.00
1390 1919 3.285523 ATGCGGCACATGGTGTTGC 62.286 57.895 4.03 0.00 37.70 4.17
1488 2017 0.660488 TGTGAACATGGTGTTGTCGC 59.340 50.000 0.00 0.00 41.28 5.19
1524 2056 1.225426 CTGCTGCTCCCATTGCCTA 59.775 57.895 0.00 0.00 0.00 3.93
1588 2240 1.534235 AGGGTCTTCGTCAGCCAGT 60.534 57.895 2.87 0.00 33.49 4.00
1600 2360 1.274703 CCACCACCATAGCAGGGTCT 61.275 60.000 0.00 0.00 36.19 3.85
1640 2400 4.430765 GTCGTCGTCGGCCACCAT 62.431 66.667 2.24 0.00 35.48 3.55
1648 2435 1.298413 CATAGCAGGGTCGTCGTCG 60.298 63.158 0.00 0.00 38.55 5.12
1825 2646 1.712018 CGACGCGGATGTACTCCTCA 61.712 60.000 12.47 0.00 42.47 3.86
1867 2688 4.599241 TCCTTCTTCTCCTTCATCAACCTT 59.401 41.667 0.00 0.00 0.00 3.50
2172 3008 7.115378 GGTTTGAGTCATGTTTTTAGCATTCAG 59.885 37.037 0.00 0.00 0.00 3.02
2357 3198 8.338986 GGTTGTTTTTGAGAACACTTTTTCAAA 58.661 29.630 0.35 0.35 41.61 2.69
2358 3199 7.713073 AGGTTGTTTTTGAGAACACTTTTTCAA 59.287 29.630 0.00 0.00 39.11 2.69
2359 3200 7.213678 AGGTTGTTTTTGAGAACACTTTTTCA 58.786 30.769 0.00 0.00 39.11 2.69
2414 3255 4.314961 CGGCCATATCATTGCTAGTTACA 58.685 43.478 2.24 0.00 0.00 2.41
2415 3256 3.125316 GCGGCCATATCATTGCTAGTTAC 59.875 47.826 2.24 0.00 0.00 2.50
2577 3424 2.676839 TGTAGCCGTTTCACGAAAAACA 59.323 40.909 14.49 3.21 46.05 2.83
2590 3438 1.229082 TGACCCTCCTTGTAGCCGT 60.229 57.895 0.00 0.00 0.00 5.68
2758 3606 2.797278 AAGCTATGGAGGACCCGCG 61.797 63.158 0.00 0.00 37.93 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.