Multiple sequence alignment - TraesCS3D01G238600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G238600 chr3D 100.000 3317 0 0 1 3317 330064393 330061077 0.000000e+00 6126
1 TraesCS3D01G238600 chr3D 84.416 154 17 5 1561 1709 401171652 401171803 9.590000e-31 145
2 TraesCS3D01G238600 chr3B 89.555 3217 126 66 1 3138 427591735 427588650 0.000000e+00 3886
3 TraesCS3D01G238600 chr3A 89.174 3196 129 81 268 3317 445281766 445278642 0.000000e+00 3784
4 TraesCS3D01G238600 chr3A 83.766 154 18 5 1561 1709 521629611 521629762 4.460000e-29 139
5 TraesCS3D01G238600 chr4D 84.337 166 19 7 1555 1715 479525195 479525358 4.430000e-34 156
6 TraesCS3D01G238600 chr5A 82.635 167 27 2 1561 1726 454733000 454733165 2.670000e-31 147
7 TraesCS3D01G238600 chr4A 83.133 166 21 7 1555 1715 685826807 685826970 9.590000e-31 145
8 TraesCS3D01G238600 chr2A 81.667 180 25 6 1558 1734 680357724 680357550 3.450000e-30 143
9 TraesCS3D01G238600 chr2B 81.053 190 25 9 1549 1734 640765320 640765138 1.240000e-29 141
10 TraesCS3D01G238600 chr6D 89.130 92 10 0 1929 2020 457644912 457644821 7.520000e-22 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G238600 chr3D 330061077 330064393 3316 True 6126 6126 100.000 1 3317 1 chr3D.!!$R1 3316
1 TraesCS3D01G238600 chr3B 427588650 427591735 3085 True 3886 3886 89.555 1 3138 1 chr3B.!!$R1 3137
2 TraesCS3D01G238600 chr3A 445278642 445281766 3124 True 3784 3784 89.174 268 3317 1 chr3A.!!$R1 3049

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
178 179 0.108615 AAGAGAAGGACACGATGGCG 60.109 55.0 0.0 0.0 44.79 5.69 F
1265 1369 0.310854 CTCCTTTGTGTGGTTTCCGC 59.689 55.0 0.0 0.0 34.12 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1305 1423 0.456221 CGTCCCAGTAGATTCGCACT 59.544 55.0 0.0 0.0 0.0 4.40 R
2453 2610 0.105453 ACTGTGGAGTGGAGTGGAGT 60.105 55.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 2.153645 CAGGAAACACATGCAGCTACA 58.846 47.619 0.00 0.00 0.00 2.74
61 62 3.118261 GCTACATGATGAACCCTTCTCCA 60.118 47.826 0.00 0.00 0.00 3.86
107 108 1.096416 GACTGTAGTGCTAGGCGAGT 58.904 55.000 0.00 0.00 0.00 4.18
148 149 3.498481 CCCCATCTTCCTGAAAGAACACA 60.498 47.826 0.00 0.00 46.85 3.72
178 179 0.108615 AAGAGAAGGACACGATGGCG 60.109 55.000 0.00 0.00 44.79 5.69
256 257 1.066358 AGCCTACGAGTTAAGTTGCCC 60.066 52.381 0.00 0.00 0.00 5.36
257 258 1.338389 GCCTACGAGTTAAGTTGCCCA 60.338 52.381 0.00 0.00 0.00 5.36
258 259 2.618053 CCTACGAGTTAAGTTGCCCAG 58.382 52.381 0.00 0.00 0.00 4.45
259 260 2.618053 CTACGAGTTAAGTTGCCCAGG 58.382 52.381 0.00 0.00 0.00 4.45
260 261 0.605589 ACGAGTTAAGTTGCCCAGGC 60.606 55.000 0.38 0.38 42.35 4.85
261 262 1.305930 CGAGTTAAGTTGCCCAGGCC 61.306 60.000 6.14 0.00 41.09 5.19
816 877 2.048127 GTCCTTGTTCCTCGCGCT 60.048 61.111 5.56 0.00 0.00 5.92
817 878 1.668151 GTCCTTGTTCCTCGCGCTT 60.668 57.895 5.56 0.00 0.00 4.68
818 879 1.070786 TCCTTGTTCCTCGCGCTTT 59.929 52.632 5.56 0.00 0.00 3.51
819 880 0.949105 TCCTTGTTCCTCGCGCTTTC 60.949 55.000 5.56 0.00 0.00 2.62
820 881 1.130613 CTTGTTCCTCGCGCTTTCG 59.869 57.895 5.56 0.00 39.07 3.46
863 926 1.444836 CTCTGTTCCTCTCGTCGAGT 58.555 55.000 21.15 0.00 38.11 4.18
864 927 1.807742 CTCTGTTCCTCTCGTCGAGTT 59.192 52.381 21.15 0.00 38.11 3.01
867 930 3.817084 TCTGTTCCTCTCGTCGAGTTAAA 59.183 43.478 21.15 11.04 38.11 1.52
1034 1121 2.178890 CCTGCTTCTGCTCGCATCC 61.179 63.158 0.00 0.00 40.48 3.51
1054 1141 0.989602 TCACTCCGTCCTCCTCACTA 59.010 55.000 0.00 0.00 0.00 2.74
1055 1142 1.564818 TCACTCCGTCCTCCTCACTAT 59.435 52.381 0.00 0.00 0.00 2.12
1205 1304 4.122143 CTCCTTCTGAGCTTTCTACCTG 57.878 50.000 0.00 0.00 33.47 4.00
1253 1357 3.639094 AGAGACATCGGTATCCTCCTTTG 59.361 47.826 0.00 0.00 35.87 2.77
1258 1362 1.553248 TCGGTATCCTCCTTTGTGTGG 59.447 52.381 0.00 0.00 0.00 4.17
1259 1363 1.278127 CGGTATCCTCCTTTGTGTGGT 59.722 52.381 0.00 0.00 0.00 4.16
1260 1364 2.290071 CGGTATCCTCCTTTGTGTGGTT 60.290 50.000 0.00 0.00 0.00 3.67
1261 1365 3.763057 GGTATCCTCCTTTGTGTGGTTT 58.237 45.455 0.00 0.00 0.00 3.27
1262 1366 3.756963 GGTATCCTCCTTTGTGTGGTTTC 59.243 47.826 0.00 0.00 0.00 2.78
1263 1367 2.358322 TCCTCCTTTGTGTGGTTTCC 57.642 50.000 0.00 0.00 0.00 3.13
1264 1368 0.951558 CCTCCTTTGTGTGGTTTCCG 59.048 55.000 0.00 0.00 0.00 4.30
1265 1369 0.310854 CTCCTTTGTGTGGTTTCCGC 59.689 55.000 0.00 0.00 34.12 5.54
2171 2307 1.593469 GCTTCCCGCGATTTTCTAGAC 59.407 52.381 8.23 0.00 0.00 2.59
2175 2311 2.589890 CGCGATTTTCTAGACGGGG 58.410 57.895 0.00 0.00 35.65 5.73
2179 2315 0.462789 GATTTTCTAGACGGGGGCGA 59.537 55.000 0.00 0.00 0.00 5.54
2284 2427 3.952675 CCGTGTGCGTTGCTGCTT 61.953 61.111 0.00 0.00 36.15 3.91
2285 2428 2.024588 CGTGTGCGTTGCTGCTTT 59.975 55.556 0.00 0.00 35.36 3.51
2314 2457 5.180680 TGTTGAGTCGACGAGAAGAGAAATA 59.819 40.000 10.46 0.00 0.00 1.40
2328 2471 8.666129 AGAAGAGAAATATATGATCCGGGTAA 57.334 34.615 0.00 0.00 0.00 2.85
2334 2477 9.503399 AGAAATATATGATCCGGGTAAAGTTTC 57.497 33.333 0.00 1.77 0.00 2.78
2335 2478 8.631480 AAATATATGATCCGGGTAAAGTTTCC 57.369 34.615 0.00 0.00 0.00 3.13
2336 2479 5.640158 ATATGATCCGGGTAAAGTTTCCA 57.360 39.130 0.00 0.00 0.00 3.53
2337 2480 3.791953 TGATCCGGGTAAAGTTTCCAA 57.208 42.857 0.00 0.00 0.00 3.53
2338 2481 3.681593 TGATCCGGGTAAAGTTTCCAAG 58.318 45.455 0.00 0.00 0.00 3.61
2339 2482 3.073356 TGATCCGGGTAAAGTTTCCAAGT 59.927 43.478 0.00 0.00 0.00 3.16
2340 2483 2.853705 TCCGGGTAAAGTTTCCAAGTG 58.146 47.619 0.00 0.00 0.00 3.16
2341 2484 1.268625 CCGGGTAAAGTTTCCAAGTGC 59.731 52.381 0.00 0.00 0.00 4.40
2342 2485 2.227194 CGGGTAAAGTTTCCAAGTGCT 58.773 47.619 0.00 0.00 0.00 4.40
2343 2486 3.404899 CGGGTAAAGTTTCCAAGTGCTA 58.595 45.455 0.00 0.00 0.00 3.49
2344 2487 3.187842 CGGGTAAAGTTTCCAAGTGCTAC 59.812 47.826 0.00 0.00 0.00 3.58
2395 2542 6.255020 CGTCAAAGTTTTGTGTAGTACTGTCT 59.745 38.462 5.39 0.00 39.18 3.41
2405 2552 6.824553 TGTGTAGTACTGTCTACTCCGATAT 58.175 40.000 5.39 0.00 40.39 1.63
2407 2554 6.927936 GTGTAGTACTGTCTACTCCGATATGA 59.072 42.308 5.39 0.00 40.39 2.15
2415 2562 0.322975 ACTCCGATATGATGCAGGGC 59.677 55.000 0.00 0.00 0.00 5.19
2440 2597 4.118410 ACGTACGTATTGGTGTTGTTCAA 58.882 39.130 21.41 0.00 0.00 2.69
2442 2599 5.076765 CGTACGTATTGGTGTTGTTCAATG 58.923 41.667 7.22 0.00 35.50 2.82
2443 2600 5.333492 CGTACGTATTGGTGTTGTTCAATGT 60.333 40.000 7.22 0.00 35.50 2.71
2444 2601 5.508200 ACGTATTGGTGTTGTTCAATGTT 57.492 34.783 0.00 0.00 35.50 2.71
2445 2602 5.516090 ACGTATTGGTGTTGTTCAATGTTC 58.484 37.500 0.00 0.00 35.50 3.18
2446 2603 5.066634 ACGTATTGGTGTTGTTCAATGTTCA 59.933 36.000 0.00 0.00 35.50 3.18
2447 2604 5.398122 CGTATTGGTGTTGTTCAATGTTCAC 59.602 40.000 0.00 0.00 35.50 3.18
2448 2605 5.596836 ATTGGTGTTGTTCAATGTTCACT 57.403 34.783 0.00 0.00 32.96 3.41
2449 2606 4.630894 TGGTGTTGTTCAATGTTCACTC 57.369 40.909 0.00 0.00 0.00 3.51
2450 2607 4.269183 TGGTGTTGTTCAATGTTCACTCT 58.731 39.130 0.00 0.00 0.00 3.24
2451 2608 4.335315 TGGTGTTGTTCAATGTTCACTCTC 59.665 41.667 0.00 0.00 0.00 3.20
2452 2609 4.261197 GGTGTTGTTCAATGTTCACTCTCC 60.261 45.833 0.00 0.00 0.00 3.71
2453 2610 4.335315 GTGTTGTTCAATGTTCACTCTCCA 59.665 41.667 0.00 0.00 0.00 3.86
2480 2637 1.750930 CACTCCACAGTCCACAGCT 59.249 57.895 0.00 0.00 0.00 4.24
2481 2638 0.969149 CACTCCACAGTCCACAGCTA 59.031 55.000 0.00 0.00 0.00 3.32
2482 2639 0.969894 ACTCCACAGTCCACAGCTAC 59.030 55.000 0.00 0.00 0.00 3.58
2618 2776 1.752694 CGGTCGGGGCCATGATTTT 60.753 57.895 4.39 0.00 0.00 1.82
2623 2781 0.108233 CGGGGCCATGATTTTGTTGG 60.108 55.000 4.39 0.00 0.00 3.77
2629 2787 3.940852 GGCCATGATTTTGTTGGGAAATC 59.059 43.478 0.00 3.33 41.59 2.17
2637 2795 2.905415 TGTTGGGAAATCATCTGCCT 57.095 45.000 0.00 0.00 0.00 4.75
2897 3078 1.067582 GGGAGTTATGACGGCGAGG 59.932 63.158 16.62 0.00 0.00 4.63
2964 3150 1.587547 GAGGGAGTGAATGCGAATCC 58.412 55.000 0.00 0.00 0.00 3.01
3099 3295 0.782384 CGAGCAAGAACACGTACCAC 59.218 55.000 0.00 0.00 0.00 4.16
3138 3334 4.894784 AGGAGACAACGCAAAAGATAAGA 58.105 39.130 0.00 0.00 0.00 2.10
3139 3335 5.491982 AGGAGACAACGCAAAAGATAAGAT 58.508 37.500 0.00 0.00 0.00 2.40
3142 3338 4.096732 ACAACGCAAAAGATAAGATGGC 57.903 40.909 0.00 0.00 0.00 4.40
3151 3361 2.324541 AGATAAGATGGCGAAGGAGCT 58.675 47.619 0.00 0.00 37.29 4.09
3187 3397 4.624452 GGACGAAGATGCGTACTACTTTTT 59.376 41.667 0.00 0.00 45.72 1.94
3239 3449 7.277098 GGTATTTTGAGACAAAGATGCGTACTA 59.723 37.037 0.00 0.00 0.00 1.82
3255 3512 0.522180 ACTACTGAAGTGACGGCTCG 59.478 55.000 0.00 0.00 36.93 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 0.179089 CTGGCTGAATGTCGGAGGAG 60.179 60.000 0.00 0.00 0.00 3.69
81 82 2.492484 CCTAGCACTACAGTCCTTCGTT 59.508 50.000 0.00 0.00 0.00 3.85
83 84 1.202313 GCCTAGCACTACAGTCCTTCG 60.202 57.143 0.00 0.00 0.00 3.79
107 108 3.418047 GGGTTTTCCTAGCACTTGCTTA 58.582 45.455 9.44 0.00 44.13 3.09
148 149 2.238395 GTCCTTCTCTTCAATGGAGGCT 59.762 50.000 0.00 0.00 0.00 4.58
188 189 4.059459 CAACTGTGACGCCGCGAC 62.059 66.667 21.79 14.65 0.00 5.19
191 192 3.414700 CTCCAACTGTGACGCCGC 61.415 66.667 0.00 0.00 0.00 6.53
289 290 0.616964 GGGAGAAGAACTACCGGGGT 60.617 60.000 6.32 0.45 40.14 4.95
445 463 0.538584 AATTACCGAACCCCGAGGAC 59.461 55.000 0.00 0.00 41.76 3.85
758 796 0.469705 ATGAGCAGAGCCTCGGAGAT 60.470 55.000 6.58 0.00 33.89 2.75
759 797 0.685785 AATGAGCAGAGCCTCGGAGA 60.686 55.000 6.58 0.00 34.56 3.71
760 798 0.249405 GAATGAGCAGAGCCTCGGAG 60.249 60.000 0.00 0.00 34.56 4.63
816 877 4.580580 CGCAGCAACGAAACGAAA 57.419 50.000 0.00 0.00 34.06 3.46
863 926 7.375544 CGGTTTTCGAACTCCGTAAAATTTTAA 59.624 33.333 23.54 0.00 38.81 1.52
864 927 6.850317 CGGTTTTCGAACTCCGTAAAATTTTA 59.150 34.615 23.54 6.54 38.81 1.52
867 930 4.775664 CGGTTTTCGAACTCCGTAAAATT 58.224 39.130 23.54 0.00 38.81 1.82
961 1040 9.521841 CTCCTCCTCTTTACCTTCTTTTTATTT 57.478 33.333 0.00 0.00 0.00 1.40
962 1041 8.110271 CCTCCTCCTCTTTACCTTCTTTTTATT 58.890 37.037 0.00 0.00 0.00 1.40
963 1042 7.461363 TCCTCCTCCTCTTTACCTTCTTTTTAT 59.539 37.037 0.00 0.00 0.00 1.40
964 1043 6.790963 TCCTCCTCCTCTTTACCTTCTTTTTA 59.209 38.462 0.00 0.00 0.00 1.52
965 1044 5.611408 TCCTCCTCCTCTTTACCTTCTTTTT 59.389 40.000 0.00 0.00 0.00 1.94
966 1045 5.163390 TCCTCCTCCTCTTTACCTTCTTTT 58.837 41.667 0.00 0.00 0.00 2.27
1054 1141 1.995376 AAGACCAAAGGAACGGCAAT 58.005 45.000 0.00 0.00 0.00 3.56
1055 1142 2.642154 TAAGACCAAAGGAACGGCAA 57.358 45.000 0.00 0.00 0.00 4.52
1187 1286 4.021544 AGACACAGGTAGAAAGCTCAGAAG 60.022 45.833 0.00 0.00 0.00 2.85
1205 1304 3.792401 CCCAAAAACCCTTTGAAGACAC 58.208 45.455 0.00 0.00 0.00 3.67
1219 1323 2.699954 GATGTCTCTCTCGCCCAAAAA 58.300 47.619 0.00 0.00 0.00 1.94
1253 1357 1.009335 GGAAACGCGGAAACCACAC 60.009 57.895 12.47 0.00 0.00 3.82
1302 1420 2.426024 GTCCCAGTAGATTCGCACTGTA 59.574 50.000 15.75 5.67 40.47 2.74
1305 1423 0.456221 CGTCCCAGTAGATTCGCACT 59.544 55.000 0.00 0.00 0.00 4.40
1350 1468 3.062466 CAGCCCTCGTCGTCCTCA 61.062 66.667 0.00 0.00 0.00 3.86
1630 1760 2.125350 GAAGGTGCCGAGCCAGAG 60.125 66.667 0.00 0.00 0.00 3.35
1965 2098 2.352032 GCTGCTGGAGTAGACCGGT 61.352 63.158 6.92 6.92 38.47 5.28
2175 2311 3.491652 GAAGCAAGCTCCGTCGCC 61.492 66.667 0.00 0.00 0.00 5.54
2179 2315 0.466124 GATAGGGAAGCAAGCTCCGT 59.534 55.000 0.00 3.39 0.00 4.69
2205 2341 5.053221 CGACAAAATACTCTCGACATACACG 60.053 44.000 0.00 0.00 0.00 4.49
2284 2427 2.356695 TCTCGTCGACTCAACACAGAAA 59.643 45.455 14.70 0.00 0.00 2.52
2285 2428 1.944709 TCTCGTCGACTCAACACAGAA 59.055 47.619 14.70 0.00 0.00 3.02
2314 2457 5.640158 TGGAAACTTTACCCGGATCATAT 57.360 39.130 0.73 0.00 0.00 1.78
2328 2471 3.214328 CAGTGGTAGCACTTGGAAACTT 58.786 45.455 24.50 0.00 32.26 2.66
2334 2477 0.250467 ACAGCAGTGGTAGCACTTGG 60.250 55.000 24.50 17.83 32.26 3.61
2335 2478 0.870393 CACAGCAGTGGTAGCACTTG 59.130 55.000 24.50 21.97 42.13 3.16
2336 2479 0.886490 GCACAGCAGTGGTAGCACTT 60.886 55.000 24.50 9.15 45.98 3.16
2337 2480 1.302033 GCACAGCAGTGGTAGCACT 60.302 57.895 21.62 21.62 45.98 4.40
2338 2481 3.257933 GCACAGCAGTGGTAGCAC 58.742 61.111 17.29 17.29 45.98 4.40
2344 2487 1.672356 GTACCCAGCACAGCAGTGG 60.672 63.158 11.54 0.00 45.98 4.00
2395 2542 1.550524 GCCCTGCATCATATCGGAGTA 59.449 52.381 0.00 0.00 0.00 2.59
2405 2552 1.140161 GTACGTACGCCCTGCATCA 59.860 57.895 16.72 0.00 0.00 3.07
2407 2554 2.103538 CGTACGTACGCCCTGCAT 59.896 61.111 32.36 0.00 43.14 3.96
2428 2585 4.269183 AGAGTGAACATTGAACAACACCA 58.731 39.130 0.00 0.00 0.00 4.17
2440 2597 2.564947 GAGTGGAGTGGAGAGTGAACAT 59.435 50.000 0.00 0.00 0.00 2.71
2442 2599 1.273886 GGAGTGGAGTGGAGAGTGAAC 59.726 57.143 0.00 0.00 0.00 3.18
2443 2600 1.133167 TGGAGTGGAGTGGAGAGTGAA 60.133 52.381 0.00 0.00 0.00 3.18
2444 2601 0.482887 TGGAGTGGAGTGGAGAGTGA 59.517 55.000 0.00 0.00 0.00 3.41
2445 2602 0.605589 GTGGAGTGGAGTGGAGAGTG 59.394 60.000 0.00 0.00 0.00 3.51
2446 2603 0.485099 AGTGGAGTGGAGTGGAGAGT 59.515 55.000 0.00 0.00 0.00 3.24
2447 2604 1.181786 GAGTGGAGTGGAGTGGAGAG 58.818 60.000 0.00 0.00 0.00 3.20
2448 2605 0.251832 GGAGTGGAGTGGAGTGGAGA 60.252 60.000 0.00 0.00 0.00 3.71
2449 2606 0.542938 TGGAGTGGAGTGGAGTGGAG 60.543 60.000 0.00 0.00 0.00 3.86
2450 2607 0.832135 GTGGAGTGGAGTGGAGTGGA 60.832 60.000 0.00 0.00 0.00 4.02
2451 2608 1.121407 TGTGGAGTGGAGTGGAGTGG 61.121 60.000 0.00 0.00 0.00 4.00
2452 2609 0.319728 CTGTGGAGTGGAGTGGAGTG 59.680 60.000 0.00 0.00 0.00 3.51
2453 2610 0.105453 ACTGTGGAGTGGAGTGGAGT 60.105 55.000 0.00 0.00 0.00 3.85
2618 2776 2.041485 TCAGGCAGATGATTTCCCAACA 59.959 45.455 0.00 0.00 0.00 3.33
2623 2781 4.497006 CGTTTGATCAGGCAGATGATTTCC 60.497 45.833 0.00 0.00 40.02 3.13
2629 2787 1.329906 GAGCGTTTGATCAGGCAGATG 59.670 52.381 15.11 0.92 37.00 2.90
2637 2795 2.135139 GTGTGAGTGAGCGTTTGATCA 58.865 47.619 0.00 0.00 38.40 2.92
3000 3186 4.803426 CAGGACCACGCCGCTCTC 62.803 72.222 0.00 0.00 0.00 3.20
3051 3247 3.299977 TGGGTCGTGGACTCGTGG 61.300 66.667 0.00 0.00 35.49 4.94
3052 3248 2.049433 GTGGGTCGTGGACTCGTG 60.049 66.667 0.00 0.00 35.49 4.35
3053 3249 3.667282 CGTGGGTCGTGGACTCGT 61.667 66.667 0.00 0.00 35.49 4.18
3099 3295 1.377202 CTTCCCCATGTGGTCACCG 60.377 63.158 0.00 0.00 0.00 4.94
3138 3334 1.141881 CACGTAGCTCCTTCGCCAT 59.858 57.895 0.00 0.00 0.00 4.40
3139 3335 2.571757 CACGTAGCTCCTTCGCCA 59.428 61.111 0.00 0.00 0.00 5.69
3142 3338 2.579787 CGCCACGTAGCTCCTTCG 60.580 66.667 4.09 0.00 0.00 3.79
3210 3420 4.142160 GCATCTTTGTCTCAAAATACCCCC 60.142 45.833 0.00 0.00 0.00 5.40
3211 3421 4.438744 CGCATCTTTGTCTCAAAATACCCC 60.439 45.833 0.00 0.00 0.00 4.95
3212 3422 4.156008 ACGCATCTTTGTCTCAAAATACCC 59.844 41.667 0.00 0.00 0.00 3.69
3213 3423 5.296813 ACGCATCTTTGTCTCAAAATACC 57.703 39.130 0.00 0.00 0.00 2.73
3214 3424 7.061752 AGTACGCATCTTTGTCTCAAAATAC 57.938 36.000 0.00 0.00 0.00 1.89
3215 3425 8.033038 AGTAGTACGCATCTTTGTCTCAAAATA 58.967 33.333 0.00 0.00 0.00 1.40
3216 3426 6.874134 AGTAGTACGCATCTTTGTCTCAAAAT 59.126 34.615 0.00 0.00 0.00 1.82
3239 3449 2.201022 ACCGAGCCGTCACTTCAGT 61.201 57.895 0.00 0.00 0.00 3.41
3264 3521 2.203280 TGCACAGGGTCCAAACGG 60.203 61.111 0.00 0.00 0.00 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.