Multiple sequence alignment - TraesCS3D01G237500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G237500 chr3D 100.000 5880 0 0 1 5880 328520307 328514428 0.000000e+00 10859.0
1 TraesCS3D01G237500 chr3D 81.714 175 26 4 402 571 441195697 441195524 2.210000e-29 141.0
2 TraesCS3D01G237500 chr3D 84.091 132 11 1 2 123 588494084 588493953 1.040000e-22 119.0
3 TraesCS3D01G237500 chr3D 91.045 67 6 0 148 214 179570723 179570789 2.260000e-14 91.6
4 TraesCS3D01G237500 chr3D 91.667 48 3 1 2914 2961 586960156 586960110 1.370000e-06 65.8
5 TraesCS3D01G237500 chr3A 94.670 4672 146 46 741 5373 443122966 443118359 0.000000e+00 7153.0
6 TraesCS3D01G237500 chr3A 91.324 438 33 5 5443 5879 443094383 443093950 1.410000e-165 593.0
7 TraesCS3D01G237500 chr3A 90.588 85 8 0 131 215 707116008 707116092 4.820000e-21 113.0
8 TraesCS3D01G237500 chr3A 86.441 59 8 0 2863 2921 195460580 195460638 1.370000e-06 65.8
9 TraesCS3D01G237500 chr3B 95.663 2882 89 19 740 3596 425681799 425678929 0.000000e+00 4597.0
10 TraesCS3D01G237500 chr3B 96.588 1612 29 12 3595 5203 425678770 425677182 0.000000e+00 2649.0
11 TraesCS3D01G237500 chr3B 93.970 398 19 4 5459 5854 425677072 425676678 1.090000e-166 597.0
12 TraesCS3D01G237500 chr3B 94.565 92 5 0 5375 5466 181342599 181342508 6.140000e-30 143.0
13 TraesCS3D01G237500 chr1D 83.677 533 57 12 218 721 406132150 406131619 5.330000e-130 475.0
14 TraesCS3D01G237500 chr1D 83.364 541 51 14 213 724 373422820 373422290 1.150000e-126 464.0
15 TraesCS3D01G237500 chr1D 87.129 101 10 2 2863 2963 444347386 444347483 1.730000e-20 111.0
16 TraesCS3D01G237500 chr1D 90.909 77 5 2 138 213 141897132 141897057 1.040000e-17 102.0
17 TraesCS3D01G237500 chr1D 91.176 68 6 0 148 215 486896871 486896804 6.270000e-15 93.5
18 TraesCS3D01G237500 chr1D 100.000 29 0 0 2923 2951 68242002 68242030 3.000000e-03 54.7
19 TraesCS3D01G237500 chr5A 84.553 492 54 11 214 688 426750058 426749572 8.920000e-128 468.0
20 TraesCS3D01G237500 chr5A 94.681 94 3 2 5369 5461 112221124 112221032 1.710000e-30 145.0
21 TraesCS3D01G237500 chr5A 81.955 133 19 2 83 215 354971205 354971078 2.240000e-19 108.0
22 TraesCS3D01G237500 chr5A 82.090 134 12 3 1 123 339043287 339043155 2.900000e-18 104.0
23 TraesCS3D01G237500 chr5A 90.196 51 2 3 5463 5510 683599033 683599083 4.920000e-06 63.9
24 TraesCS3D01G237500 chr5A 97.143 35 1 0 5463 5497 681942836 681942802 6.360000e-05 60.2
25 TraesCS3D01G237500 chr1B 83.532 504 59 11 216 695 498703689 498703186 3.230000e-122 449.0
26 TraesCS3D01G237500 chr1B 83.386 319 35 14 216 518 590007839 590008155 4.490000e-71 279.0
27 TraesCS3D01G237500 chr1B 88.119 101 8 3 2863 2963 604324817 604324913 3.720000e-22 117.0
28 TraesCS3D01G237500 chr1B 92.308 78 6 0 138 215 196059098 196059021 1.730000e-20 111.0
29 TraesCS3D01G237500 chr4A 82.711 509 64 10 242 726 65719165 65718657 1.170000e-116 431.0
30 TraesCS3D01G237500 chr4A 85.437 309 37 7 5531 5834 731618942 731619247 1.230000e-81 315.0
31 TraesCS3D01G237500 chr4A 78.692 474 70 17 216 660 704173643 704173172 2.680000e-73 287.0
32 TraesCS3D01G237500 chr4A 78.692 474 70 17 216 660 704200509 704200038 2.680000e-73 287.0
33 TraesCS3D01G237500 chr4A 78.059 474 73 17 216 660 704227389 704226918 2.700000e-68 270.0
34 TraesCS3D01G237500 chr7B 83.141 433 43 9 213 629 59624874 59625292 9.310000e-98 368.0
35 TraesCS3D01G237500 chr7B 91.379 116 10 0 5719 5834 19950749 19950864 6.100000e-35 159.0
36 TraesCS3D01G237500 chr2B 79.520 542 56 21 213 721 654717006 654716487 9.440000e-88 335.0
37 TraesCS3D01G237500 chr2B 77.714 525 70 31 213 721 654694995 654694502 1.610000e-70 278.0
38 TraesCS3D01G237500 chr2B 85.200 250 29 4 213 455 654644927 654644679 3.520000e-62 250.0
39 TraesCS3D01G237500 chr2B 81.203 133 20 3 83 215 513270015 513270142 1.040000e-17 102.0
40 TraesCS3D01G237500 chr2B 91.176 68 6 0 148 215 449828819 449828752 6.270000e-15 93.5
41 TraesCS3D01G237500 chr2B 88.525 61 4 2 5459 5516 719440792 719440732 2.940000e-08 71.3
42 TraesCS3D01G237500 chr7D 80.510 431 63 8 215 626 632546303 632546731 1.590000e-80 311.0
43 TraesCS3D01G237500 chr7D 92.857 42 2 1 5459 5499 117242291 117242250 6.360000e-05 60.2
44 TraesCS3D01G237500 chr5D 84.667 300 43 3 5534 5832 299064957 299065254 4.460000e-76 296.0
45 TraesCS3D01G237500 chr5D 92.632 95 7 0 5367 5461 238555765 238555671 2.860000e-28 137.0
46 TraesCS3D01G237500 chr5D 94.318 88 5 0 5374 5461 480491835 480491922 1.030000e-27 135.0
47 TraesCS3D01G237500 chr5D 100.000 29 0 0 2923 2951 317386500 317386472 3.000000e-03 54.7
48 TraesCS3D01G237500 chr6D 85.185 270 33 6 5583 5850 468245000 468244736 2.700000e-68 270.0
49 TraesCS3D01G237500 chr6D 79.681 251 28 5 5536 5784 112955589 112955360 6.100000e-35 159.0
50 TraesCS3D01G237500 chr1A 88.837 215 21 2 1 215 501064082 501063871 1.630000e-65 261.0
51 TraesCS3D01G237500 chr1A 91.667 96 8 0 5363 5458 307866769 307866674 3.700000e-27 134.0
52 TraesCS3D01G237500 chr2D 84.733 262 37 3 5575 5834 88755629 88755889 5.850000e-65 259.0
53 TraesCS3D01G237500 chr4D 82.877 292 41 6 437 721 349712314 349712603 2.720000e-63 254.0
54 TraesCS3D01G237500 chr4D 85.897 78 5 4 5304 5376 300781425 300781349 1.760000e-10 78.7
55 TraesCS3D01G237500 chr6A 94.792 96 5 0 5370 5465 1090374 1090279 3.670000e-32 150.0
56 TraesCS3D01G237500 chr6A 92.157 51 3 1 5707 5756 140730417 140730367 2.940000e-08 71.3
57 TraesCS3D01G237500 chrUn 96.471 85 3 0 5376 5460 75308469 75308385 2.210000e-29 141.0
58 TraesCS3D01G237500 chrUn 95.455 88 4 0 5373 5460 242405208 242405295 2.210000e-29 141.0
59 TraesCS3D01G237500 chr7A 93.548 93 5 1 5375 5467 19313520 19313429 2.860000e-28 137.0
60 TraesCS3D01G237500 chr7A 88.000 50 3 3 5463 5509 552673622 552673671 8.230000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G237500 chr3D 328514428 328520307 5879 True 10859.000000 10859 100.000 1 5880 1 chr3D.!!$R1 5879
1 TraesCS3D01G237500 chr3A 443118359 443122966 4607 True 7153.000000 7153 94.670 741 5373 1 chr3A.!!$R2 4632
2 TraesCS3D01G237500 chr3B 425676678 425681799 5121 True 2614.333333 4597 95.407 740 5854 3 chr3B.!!$R2 5114
3 TraesCS3D01G237500 chr1D 406131619 406132150 531 True 475.000000 475 83.677 218 721 1 chr1D.!!$R3 503
4 TraesCS3D01G237500 chr1D 373422290 373422820 530 True 464.000000 464 83.364 213 724 1 chr1D.!!$R2 511
5 TraesCS3D01G237500 chr1B 498703186 498703689 503 True 449.000000 449 83.532 216 695 1 chr1B.!!$R2 479
6 TraesCS3D01G237500 chr4A 65718657 65719165 508 True 431.000000 431 82.711 242 726 1 chr4A.!!$R1 484
7 TraesCS3D01G237500 chr2B 654716487 654717006 519 True 335.000000 335 79.520 213 721 1 chr2B.!!$R4 508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
145 146 0.029577 AACCCAACCCAAACCCCAAT 60.030 50.000 0.00 0.00 0.00 3.16 F
173 174 0.031817 CTTCCCTTGGGGCATTGGAT 60.032 55.000 5.78 0.00 43.94 3.41 F
1668 1748 0.036164 TGTTGCATTGGGTAGCTCGT 59.964 50.000 0.00 0.00 0.00 4.18 F
2032 2117 1.617357 GACTTGGGAGTTCTACACCGT 59.383 52.381 0.00 0.00 35.88 4.83 F
3245 3334 1.807142 GAGAACTGGTGCTAGCAAACC 59.193 52.381 21.29 18.06 36.96 3.27 F
3928 4188 0.308993 GCTCAAGGTCACAACACTGC 59.691 55.000 0.00 0.00 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1604 1684 1.005394 ACGATTGGACCGAAAGCGT 60.005 52.632 2.31 2.31 44.04 5.07 R
1787 1871 1.079543 AGGACATCAGCACGACAGC 60.080 57.895 0.00 0.00 0.00 4.40 R
3213 3302 4.731773 GCACCAGTTCTCTGAACAAACAAG 60.732 45.833 12.16 0.20 43.76 3.16 R
3818 4078 1.265095 GCATAGGCAACCATGTCATCG 59.735 52.381 0.00 0.00 40.72 3.84 R
4384 4645 2.937469 TCACAAAAGGTTGCACACTG 57.063 45.000 0.00 0.00 38.39 3.66 R
5800 6094 0.036732 TGCTCCAGGTCATTGGACAC 59.963 55.000 0.00 0.00 46.17 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.672188 TTATGAACGTTGCAACACCG 57.328 45.000 28.01 17.32 0.00 4.94
20 21 0.236187 TATGAACGTTGCAACACCGC 59.764 50.000 28.01 14.56 0.00 5.68
21 22 2.353030 GAACGTTGCAACACCGCC 60.353 61.111 28.01 9.16 0.00 6.13
22 23 3.114647 GAACGTTGCAACACCGCCA 62.115 57.895 28.01 0.00 0.00 5.69
23 24 2.400896 GAACGTTGCAACACCGCCAT 62.401 55.000 28.01 6.43 0.00 4.40
24 25 2.010582 AACGTTGCAACACCGCCATT 62.011 50.000 28.01 8.17 0.00 3.16
25 26 1.167155 ACGTTGCAACACCGCCATTA 61.167 50.000 28.01 0.00 0.00 1.90
26 27 0.039978 CGTTGCAACACCGCCATTAA 60.040 50.000 28.01 0.00 0.00 1.40
27 28 1.600663 CGTTGCAACACCGCCATTAAA 60.601 47.619 28.01 0.00 0.00 1.52
28 29 2.474816 GTTGCAACACCGCCATTAAAA 58.525 42.857 24.52 0.00 0.00 1.52
29 30 2.141535 TGCAACACCGCCATTAAAAC 57.858 45.000 0.00 0.00 0.00 2.43
30 31 1.269831 TGCAACACCGCCATTAAAACC 60.270 47.619 0.00 0.00 0.00 3.27
31 32 1.000394 GCAACACCGCCATTAAAACCT 60.000 47.619 0.00 0.00 0.00 3.50
32 33 2.229302 GCAACACCGCCATTAAAACCTA 59.771 45.455 0.00 0.00 0.00 3.08
33 34 3.119280 GCAACACCGCCATTAAAACCTAT 60.119 43.478 0.00 0.00 0.00 2.57
34 35 4.420168 CAACACCGCCATTAAAACCTATG 58.580 43.478 0.00 0.00 0.00 2.23
35 36 2.425668 ACACCGCCATTAAAACCTATGC 59.574 45.455 0.00 0.00 0.00 3.14
36 37 2.687935 CACCGCCATTAAAACCTATGCT 59.312 45.455 0.00 0.00 0.00 3.79
37 38 2.949644 ACCGCCATTAAAACCTATGCTC 59.050 45.455 0.00 0.00 0.00 4.26
38 39 2.032030 CCGCCATTAAAACCTATGCTCG 60.032 50.000 0.00 0.00 0.00 5.03
39 40 2.602217 CGCCATTAAAACCTATGCTCGC 60.602 50.000 0.00 0.00 0.00 5.03
40 41 2.602217 GCCATTAAAACCTATGCTCGCG 60.602 50.000 0.00 0.00 0.00 5.87
41 42 2.612212 CCATTAAAACCTATGCTCGCGT 59.388 45.455 5.77 0.00 0.00 6.01
42 43 3.546020 CCATTAAAACCTATGCTCGCGTG 60.546 47.826 5.77 4.44 0.00 5.34
43 44 1.003851 TAAAACCTATGCTCGCGTGC 58.996 50.000 25.10 25.10 0.00 5.34
44 45 1.644786 AAAACCTATGCTCGCGTGCC 61.645 55.000 28.07 12.34 0.00 5.01
45 46 4.530857 ACCTATGCTCGCGTGCCC 62.531 66.667 28.07 4.82 0.00 5.36
47 48 4.227134 CTATGCTCGCGTGCCCCT 62.227 66.667 28.07 16.00 0.00 4.79
48 49 3.740128 CTATGCTCGCGTGCCCCTT 62.740 63.158 28.07 13.88 0.00 3.95
49 50 3.323758 TATGCTCGCGTGCCCCTTT 62.324 57.895 28.07 11.64 0.00 3.11
50 51 1.962321 TATGCTCGCGTGCCCCTTTA 61.962 55.000 28.07 10.65 0.00 1.85
51 52 2.513897 GCTCGCGTGCCCCTTTAT 60.514 61.111 21.81 0.00 0.00 1.40
52 53 2.112815 GCTCGCGTGCCCCTTTATT 61.113 57.895 21.81 0.00 0.00 1.40
53 54 0.812412 GCTCGCGTGCCCCTTTATTA 60.812 55.000 21.81 0.00 0.00 0.98
54 55 1.658994 CTCGCGTGCCCCTTTATTAA 58.341 50.000 5.77 0.00 0.00 1.40
55 56 1.329599 CTCGCGTGCCCCTTTATTAAC 59.670 52.381 5.77 0.00 0.00 2.01
56 57 0.379316 CGCGTGCCCCTTTATTAACC 59.621 55.000 0.00 0.00 0.00 2.85
57 58 0.742505 GCGTGCCCCTTTATTAACCC 59.257 55.000 0.00 0.00 0.00 4.11
58 59 1.956159 GCGTGCCCCTTTATTAACCCA 60.956 52.381 0.00 0.00 0.00 4.51
59 60 1.746787 CGTGCCCCTTTATTAACCCAC 59.253 52.381 0.00 0.00 0.00 4.61
60 61 2.104967 GTGCCCCTTTATTAACCCACC 58.895 52.381 0.00 0.00 0.00 4.61
61 62 2.004589 TGCCCCTTTATTAACCCACCT 58.995 47.619 0.00 0.00 0.00 4.00
62 63 2.384029 TGCCCCTTTATTAACCCACCTT 59.616 45.455 0.00 0.00 0.00 3.50
63 64 2.764010 GCCCCTTTATTAACCCACCTTG 59.236 50.000 0.00 0.00 0.00 3.61
64 65 2.764010 CCCCTTTATTAACCCACCTTGC 59.236 50.000 0.00 0.00 0.00 4.01
65 66 2.764010 CCCTTTATTAACCCACCTTGCC 59.236 50.000 0.00 0.00 0.00 4.52
66 67 2.425668 CCTTTATTAACCCACCTTGCCG 59.574 50.000 0.00 0.00 0.00 5.69
67 68 1.465794 TTATTAACCCACCTTGCCGC 58.534 50.000 0.00 0.00 0.00 6.53
68 69 0.621609 TATTAACCCACCTTGCCGCT 59.378 50.000 0.00 0.00 0.00 5.52
69 70 0.679960 ATTAACCCACCTTGCCGCTC 60.680 55.000 0.00 0.00 0.00 5.03
70 71 2.058125 TTAACCCACCTTGCCGCTCA 62.058 55.000 0.00 0.00 0.00 4.26
71 72 2.741486 TAACCCACCTTGCCGCTCAC 62.741 60.000 0.00 0.00 0.00 3.51
73 74 4.641645 CCACCTTGCCGCTCACCA 62.642 66.667 0.00 0.00 0.00 4.17
74 75 3.357079 CACCTTGCCGCTCACCAC 61.357 66.667 0.00 0.00 0.00 4.16
75 76 3.560251 ACCTTGCCGCTCACCACT 61.560 61.111 0.00 0.00 0.00 4.00
76 77 2.281761 CCTTGCCGCTCACCACTT 60.282 61.111 0.00 0.00 0.00 3.16
77 78 1.003839 CCTTGCCGCTCACCACTTA 60.004 57.895 0.00 0.00 0.00 2.24
78 79 1.298859 CCTTGCCGCTCACCACTTAC 61.299 60.000 0.00 0.00 0.00 2.34
79 80 1.298859 CTTGCCGCTCACCACTTACC 61.299 60.000 0.00 0.00 0.00 2.85
80 81 2.436115 GCCGCTCACCACTTACCC 60.436 66.667 0.00 0.00 0.00 3.69
81 82 3.065306 CCGCTCACCACTTACCCA 58.935 61.111 0.00 0.00 0.00 4.51
82 83 1.079127 CCGCTCACCACTTACCCAG 60.079 63.158 0.00 0.00 0.00 4.45
83 84 1.671742 CGCTCACCACTTACCCAGT 59.328 57.895 0.00 0.00 35.35 4.00
84 85 0.389948 CGCTCACCACTTACCCAGTC 60.390 60.000 0.00 0.00 30.92 3.51
85 86 0.977395 GCTCACCACTTACCCAGTCT 59.023 55.000 0.00 0.00 30.92 3.24
86 87 1.066787 GCTCACCACTTACCCAGTCTC 60.067 57.143 0.00 0.00 30.92 3.36
87 88 2.530701 CTCACCACTTACCCAGTCTCT 58.469 52.381 0.00 0.00 30.92 3.10
88 89 2.494073 CTCACCACTTACCCAGTCTCTC 59.506 54.545 0.00 0.00 30.92 3.20
89 90 1.202582 CACCACTTACCCAGTCTCTCG 59.797 57.143 0.00 0.00 30.92 4.04
90 91 0.173708 CCACTTACCCAGTCTCTCGC 59.826 60.000 0.00 0.00 30.92 5.03
91 92 1.178276 CACTTACCCAGTCTCTCGCT 58.822 55.000 0.00 0.00 30.92 4.93
92 93 1.133407 CACTTACCCAGTCTCTCGCTC 59.867 57.143 0.00 0.00 30.92 5.03
93 94 1.004979 ACTTACCCAGTCTCTCGCTCT 59.995 52.381 0.00 0.00 0.00 4.09
94 95 2.096248 CTTACCCAGTCTCTCGCTCTT 58.904 52.381 0.00 0.00 0.00 2.85
95 96 1.752683 TACCCAGTCTCTCGCTCTTC 58.247 55.000 0.00 0.00 0.00 2.87
96 97 0.968393 ACCCAGTCTCTCGCTCTTCC 60.968 60.000 0.00 0.00 0.00 3.46
97 98 0.682855 CCCAGTCTCTCGCTCTTCCT 60.683 60.000 0.00 0.00 0.00 3.36
98 99 0.738389 CCAGTCTCTCGCTCTTCCTC 59.262 60.000 0.00 0.00 0.00 3.71
99 100 0.738389 CAGTCTCTCGCTCTTCCTCC 59.262 60.000 0.00 0.00 0.00 4.30
100 101 0.329931 AGTCTCTCGCTCTTCCTCCA 59.670 55.000 0.00 0.00 0.00 3.86
101 102 1.178276 GTCTCTCGCTCTTCCTCCAA 58.822 55.000 0.00 0.00 0.00 3.53
102 103 1.135228 GTCTCTCGCTCTTCCTCCAAC 60.135 57.143 0.00 0.00 0.00 3.77
103 104 0.174617 CTCTCGCTCTTCCTCCAACC 59.825 60.000 0.00 0.00 0.00 3.77
104 105 0.251832 TCTCGCTCTTCCTCCAACCT 60.252 55.000 0.00 0.00 0.00 3.50
105 106 1.005569 TCTCGCTCTTCCTCCAACCTA 59.994 52.381 0.00 0.00 0.00 3.08
106 107 1.825474 CTCGCTCTTCCTCCAACCTAA 59.175 52.381 0.00 0.00 0.00 2.69
107 108 2.432510 CTCGCTCTTCCTCCAACCTAAT 59.567 50.000 0.00 0.00 0.00 1.73
108 109 2.168521 TCGCTCTTCCTCCAACCTAATG 59.831 50.000 0.00 0.00 0.00 1.90
109 110 2.293170 GCTCTTCCTCCAACCTAATGC 58.707 52.381 0.00 0.00 0.00 3.56
110 111 2.924421 CTCTTCCTCCAACCTAATGCC 58.076 52.381 0.00 0.00 0.00 4.40
111 112 2.239654 CTCTTCCTCCAACCTAATGCCA 59.760 50.000 0.00 0.00 0.00 4.92
112 113 2.852449 TCTTCCTCCAACCTAATGCCAT 59.148 45.455 0.00 0.00 0.00 4.40
113 114 2.734755 TCCTCCAACCTAATGCCATG 57.265 50.000 0.00 0.00 0.00 3.66
114 115 2.204463 TCCTCCAACCTAATGCCATGA 58.796 47.619 0.00 0.00 0.00 3.07
115 116 2.580322 TCCTCCAACCTAATGCCATGAA 59.420 45.455 0.00 0.00 0.00 2.57
116 117 2.689983 CCTCCAACCTAATGCCATGAAC 59.310 50.000 0.00 0.00 0.00 3.18
117 118 2.689983 CTCCAACCTAATGCCATGAACC 59.310 50.000 0.00 0.00 0.00 3.62
118 119 1.756538 CCAACCTAATGCCATGAACCC 59.243 52.381 0.00 0.00 0.00 4.11
119 120 1.756538 CAACCTAATGCCATGAACCCC 59.243 52.381 0.00 0.00 0.00 4.95
120 121 1.006813 ACCTAATGCCATGAACCCCA 58.993 50.000 0.00 0.00 0.00 4.96
121 122 1.360852 ACCTAATGCCATGAACCCCAA 59.639 47.619 0.00 0.00 0.00 4.12
122 123 1.756538 CCTAATGCCATGAACCCCAAC 59.243 52.381 0.00 0.00 0.00 3.77
123 124 1.756538 CTAATGCCATGAACCCCAACC 59.243 52.381 0.00 0.00 0.00 3.77
124 125 0.909133 AATGCCATGAACCCCAACCC 60.909 55.000 0.00 0.00 0.00 4.11
125 126 2.683572 GCCATGAACCCCAACCCC 60.684 66.667 0.00 0.00 0.00 4.95
126 127 2.857889 CCATGAACCCCAACCCCA 59.142 61.111 0.00 0.00 0.00 4.96
127 128 1.157276 CCATGAACCCCAACCCCAA 59.843 57.895 0.00 0.00 0.00 4.12
128 129 1.191489 CCATGAACCCCAACCCCAAC 61.191 60.000 0.00 0.00 0.00 3.77
129 130 1.157513 ATGAACCCCAACCCCAACC 59.842 57.895 0.00 0.00 0.00 3.77
130 131 2.203728 GAACCCCAACCCCAACCC 60.204 66.667 0.00 0.00 0.00 4.11
131 132 3.036959 AACCCCAACCCCAACCCA 61.037 61.111 0.00 0.00 0.00 4.51
132 133 2.607139 GAACCCCAACCCCAACCCAA 62.607 60.000 0.00 0.00 0.00 4.12
133 134 2.525629 CCCCAACCCCAACCCAAC 60.526 66.667 0.00 0.00 0.00 3.77
134 135 2.525629 CCCAACCCCAACCCAACC 60.526 66.667 0.00 0.00 0.00 3.77
135 136 2.525629 CCAACCCCAACCCAACCC 60.526 66.667 0.00 0.00 0.00 4.11
136 137 2.283809 CAACCCCAACCCAACCCA 59.716 61.111 0.00 0.00 0.00 4.51
137 138 1.383248 CAACCCCAACCCAACCCAA 60.383 57.895 0.00 0.00 0.00 4.12
138 139 0.983378 CAACCCCAACCCAACCCAAA 60.983 55.000 0.00 0.00 0.00 3.28
139 140 0.983905 AACCCCAACCCAACCCAAAC 60.984 55.000 0.00 0.00 0.00 2.93
140 141 2.144078 CCCCAACCCAACCCAAACC 61.144 63.158 0.00 0.00 0.00 3.27
141 142 2.144078 CCCAACCCAACCCAAACCC 61.144 63.158 0.00 0.00 0.00 4.11
142 143 2.144078 CCAACCCAACCCAAACCCC 61.144 63.158 0.00 0.00 0.00 4.95
143 144 1.383248 CAACCCAACCCAAACCCCA 60.383 57.895 0.00 0.00 0.00 4.96
144 145 0.983378 CAACCCAACCCAAACCCCAA 60.983 55.000 0.00 0.00 0.00 4.12
145 146 0.029577 AACCCAACCCAAACCCCAAT 60.030 50.000 0.00 0.00 0.00 3.16
146 147 0.766288 ACCCAACCCAAACCCCAATG 60.766 55.000 0.00 0.00 0.00 2.82
147 148 1.374568 CCAACCCAAACCCCAATGC 59.625 57.895 0.00 0.00 0.00 3.56
148 149 1.374568 CAACCCAAACCCCAATGCC 59.625 57.895 0.00 0.00 0.00 4.40
149 150 1.074167 AACCCAAACCCCAATGCCA 60.074 52.632 0.00 0.00 0.00 4.92
150 151 0.695803 AACCCAAACCCCAATGCCAA 60.696 50.000 0.00 0.00 0.00 4.52
151 152 1.374568 CCCAAACCCCAATGCCAAC 59.625 57.895 0.00 0.00 0.00 3.77
152 153 1.374568 CCAAACCCCAATGCCAACC 59.625 57.895 0.00 0.00 0.00 3.77
153 154 1.374568 CAAACCCCAATGCCAACCC 59.625 57.895 0.00 0.00 0.00 4.11
154 155 1.845664 AAACCCCAATGCCAACCCC 60.846 57.895 0.00 0.00 0.00 4.95
155 156 2.339462 AAACCCCAATGCCAACCCCT 62.339 55.000 0.00 0.00 0.00 4.79
156 157 2.122504 CCCCAATGCCAACCCCTT 59.877 61.111 0.00 0.00 0.00 3.95
157 158 1.989508 CCCCAATGCCAACCCCTTC 60.990 63.158 0.00 0.00 0.00 3.46
158 159 1.989508 CCCAATGCCAACCCCTTCC 60.990 63.158 0.00 0.00 0.00 3.46
159 160 1.989508 CCAATGCCAACCCCTTCCC 60.990 63.158 0.00 0.00 0.00 3.97
160 161 1.079073 CAATGCCAACCCCTTCCCT 59.921 57.895 0.00 0.00 0.00 4.20
161 162 0.545071 CAATGCCAACCCCTTCCCTT 60.545 55.000 0.00 0.00 0.00 3.95
162 163 0.545071 AATGCCAACCCCTTCCCTTG 60.545 55.000 0.00 0.00 0.00 3.61
163 164 2.283894 GCCAACCCCTTCCCTTGG 60.284 66.667 0.00 0.00 38.00 3.61
169 170 2.779981 CCCTTCCCTTGGGGCATT 59.220 61.111 5.78 0.00 43.94 3.56
170 171 1.686800 CCCTTCCCTTGGGGCATTG 60.687 63.158 5.78 0.00 43.94 2.82
171 172 1.686800 CCTTCCCTTGGGGCATTGG 60.687 63.158 5.78 0.00 43.94 3.16
172 173 1.387737 CTTCCCTTGGGGCATTGGA 59.612 57.895 5.78 0.00 43.94 3.53
173 174 0.031817 CTTCCCTTGGGGCATTGGAT 60.032 55.000 5.78 0.00 43.94 3.41
174 175 0.325484 TTCCCTTGGGGCATTGGATG 60.325 55.000 5.78 0.00 43.94 3.51
175 176 1.763256 CCCTTGGGGCATTGGATGG 60.763 63.158 0.00 0.00 35.35 3.51
176 177 1.310715 CCTTGGGGCATTGGATGGA 59.689 57.895 0.00 0.00 0.00 3.41
177 178 0.757935 CCTTGGGGCATTGGATGGAG 60.758 60.000 0.00 0.00 0.00 3.86
178 179 0.757935 CTTGGGGCATTGGATGGAGG 60.758 60.000 0.00 0.00 0.00 4.30
179 180 2.199535 GGGGCATTGGATGGAGGG 59.800 66.667 0.00 0.00 0.00 4.30
180 181 2.394506 GGGGCATTGGATGGAGGGA 61.395 63.158 0.00 0.00 0.00 4.20
181 182 1.733387 GGGGCATTGGATGGAGGGAT 61.733 60.000 0.00 0.00 0.00 3.85
182 183 0.189327 GGGCATTGGATGGAGGGATT 59.811 55.000 0.00 0.00 0.00 3.01
183 184 1.413517 GGGCATTGGATGGAGGGATTT 60.414 52.381 0.00 0.00 0.00 2.17
184 185 1.966354 GGCATTGGATGGAGGGATTTC 59.034 52.381 0.00 0.00 0.00 2.17
185 186 2.425392 GGCATTGGATGGAGGGATTTCT 60.425 50.000 0.00 0.00 0.00 2.52
186 187 3.303049 GCATTGGATGGAGGGATTTCTT 58.697 45.455 0.00 0.00 0.00 2.52
187 188 3.320256 GCATTGGATGGAGGGATTTCTTC 59.680 47.826 0.00 0.00 0.00 2.87
188 189 3.669939 TTGGATGGAGGGATTTCTTCC 57.330 47.619 0.00 0.00 44.62 3.46
189 190 2.863884 TGGATGGAGGGATTTCTTCCT 58.136 47.619 0.00 0.00 44.75 3.36
190 191 4.021007 TGGATGGAGGGATTTCTTCCTA 57.979 45.455 0.00 0.00 44.75 2.94
191 192 3.976654 TGGATGGAGGGATTTCTTCCTAG 59.023 47.826 0.00 0.00 44.75 3.02
192 193 3.329225 GGATGGAGGGATTTCTTCCTAGG 59.671 52.174 0.82 0.82 44.75 3.02
193 194 3.508952 TGGAGGGATTTCTTCCTAGGT 57.491 47.619 9.08 0.00 44.75 3.08
194 195 3.815507 TGGAGGGATTTCTTCCTAGGTT 58.184 45.455 9.08 0.00 44.75 3.50
195 196 3.523564 TGGAGGGATTTCTTCCTAGGTTG 59.476 47.826 9.08 3.01 44.75 3.77
196 197 3.546724 GAGGGATTTCTTCCTAGGTTGC 58.453 50.000 9.08 0.00 44.75 4.17
197 198 3.193782 AGGGATTTCTTCCTAGGTTGCT 58.806 45.455 9.08 0.00 44.75 3.91
198 199 3.201045 AGGGATTTCTTCCTAGGTTGCTC 59.799 47.826 9.08 0.00 44.75 4.26
199 200 3.198872 GGATTTCTTCCTAGGTTGCTCG 58.801 50.000 9.08 0.00 41.78 5.03
200 201 2.094762 TTTCTTCCTAGGTTGCTCGC 57.905 50.000 9.08 0.00 0.00 5.03
201 202 1.267121 TTCTTCCTAGGTTGCTCGCT 58.733 50.000 9.08 0.00 0.00 4.93
202 203 0.532573 TCTTCCTAGGTTGCTCGCTG 59.467 55.000 9.08 0.00 0.00 5.18
203 204 0.460987 CTTCCTAGGTTGCTCGCTGG 60.461 60.000 9.08 0.00 0.00 4.85
204 205 1.899437 TTCCTAGGTTGCTCGCTGGG 61.899 60.000 9.08 0.00 0.00 4.45
205 206 2.660064 CCTAGGTTGCTCGCTGGGT 61.660 63.158 0.00 0.00 0.00 4.51
206 207 1.448540 CTAGGTTGCTCGCTGGGTG 60.449 63.158 0.00 0.00 0.00 4.61
207 208 1.888436 CTAGGTTGCTCGCTGGGTGA 61.888 60.000 0.00 0.00 0.00 4.02
208 209 2.167398 TAGGTTGCTCGCTGGGTGAC 62.167 60.000 0.00 0.00 0.00 3.67
225 226 2.202878 CCGCACCGGTAGTCATGG 60.203 66.667 6.87 0.00 42.73 3.66
250 251 2.190981 GTTATGGTCGCTTCTACGGTG 58.809 52.381 0.00 0.00 0.00 4.94
251 252 1.466856 TATGGTCGCTTCTACGGTGT 58.533 50.000 0.00 0.00 0.00 4.16
252 253 0.606604 ATGGTCGCTTCTACGGTGTT 59.393 50.000 0.00 0.00 0.00 3.32
253 254 0.390124 TGGTCGCTTCTACGGTGTTT 59.610 50.000 0.00 0.00 0.00 2.83
254 255 1.612950 TGGTCGCTTCTACGGTGTTTA 59.387 47.619 0.00 0.00 0.00 2.01
255 256 1.988467 GGTCGCTTCTACGGTGTTTAC 59.012 52.381 0.00 0.00 0.00 2.01
256 257 2.352127 GGTCGCTTCTACGGTGTTTACT 60.352 50.000 0.00 0.00 0.00 2.24
257 258 3.311966 GTCGCTTCTACGGTGTTTACTT 58.688 45.455 0.00 0.00 0.00 2.24
258 259 3.363128 GTCGCTTCTACGGTGTTTACTTC 59.637 47.826 0.00 0.00 0.00 3.01
269 279 2.414138 GTGTTTACTTCGATTCCCCGTG 59.586 50.000 0.00 0.00 0.00 4.94
297 307 1.556564 GCGGATCGAATCGAAACTCA 58.443 50.000 10.12 0.00 39.99 3.41
346 358 2.662866 GGGGAAAATAGCTTACCACCC 58.337 52.381 0.00 0.00 35.80 4.61
375 390 2.762234 GCTGCTGCAGATGCCAGTC 61.762 63.158 32.30 8.77 41.18 3.51
406 421 2.484889 GAGGTCGACTTGCTGTTCTTT 58.515 47.619 16.46 0.00 0.00 2.52
449 477 1.388531 GGTGAGAGTGGGGAGAGGA 59.611 63.158 0.00 0.00 0.00 3.71
455 483 0.755327 GAGTGGGGAGAGGAGAGAGC 60.755 65.000 0.00 0.00 0.00 4.09
457 485 2.309504 TGGGGAGAGGAGAGAGCGA 61.310 63.158 0.00 0.00 0.00 4.93
458 486 1.528309 GGGGAGAGGAGAGAGCGAG 60.528 68.421 0.00 0.00 0.00 5.03
459 487 2.193536 GGGAGAGGAGAGAGCGAGC 61.194 68.421 0.00 0.00 0.00 5.03
460 488 2.542907 GGAGAGGAGAGAGCGAGCG 61.543 68.421 0.00 0.00 0.00 5.03
461 489 1.522806 GAGAGGAGAGAGCGAGCGA 60.523 63.158 0.00 0.00 0.00 4.93
580 628 1.351430 CGCGAGAAACTGCCGATTCA 61.351 55.000 0.00 0.00 0.00 2.57
582 630 1.398390 GCGAGAAACTGCCGATTCAAT 59.602 47.619 1.26 0.00 0.00 2.57
596 644 2.296831 TTCAATCGTAATTCGCGGGA 57.703 45.000 6.13 0.00 39.67 5.14
629 677 3.123959 GGTGCTTTAAAGTTCGTGCGATA 59.876 43.478 16.38 0.00 0.00 2.92
664 714 0.188342 ATCCAGGCCAACCAAACAGT 59.812 50.000 5.01 0.00 39.06 3.55
666 716 0.754957 CCAGGCCAACCAAACAGTCA 60.755 55.000 5.01 0.00 39.06 3.41
705 755 2.026641 CCTGGTTCGGACTTATACGGA 58.973 52.381 0.00 0.00 30.74 4.69
706 756 2.626743 CCTGGTTCGGACTTATACGGAT 59.373 50.000 0.00 0.00 30.74 4.18
709 759 5.047519 CCTGGTTCGGACTTATACGGATAAT 60.048 44.000 0.00 0.00 30.74 1.28
721 771 1.339247 ACGGATAATCAAACACGCCCA 60.339 47.619 0.00 0.00 0.00 5.36
726 776 5.410132 CGGATAATCAAACACGCCCATAATA 59.590 40.000 0.00 0.00 0.00 0.98
727 777 6.093495 CGGATAATCAAACACGCCCATAATAT 59.907 38.462 0.00 0.00 0.00 1.28
728 778 7.361713 CGGATAATCAAACACGCCCATAATATT 60.362 37.037 0.00 0.00 0.00 1.28
729 779 8.952278 GGATAATCAAACACGCCCATAATATTA 58.048 33.333 0.00 0.00 0.00 0.98
732 782 6.007936 TCAAACACGCCCATAATATTATGC 57.992 37.500 24.38 15.80 39.30 3.14
733 783 5.532779 TCAAACACGCCCATAATATTATGCA 59.467 36.000 24.38 0.00 39.30 3.96
734 784 5.627499 AACACGCCCATAATATTATGCAG 57.373 39.130 24.38 19.14 39.30 4.41
735 785 4.009675 ACACGCCCATAATATTATGCAGG 58.990 43.478 24.38 21.50 39.30 4.85
736 786 4.260985 CACGCCCATAATATTATGCAGGA 58.739 43.478 24.38 0.00 39.30 3.86
737 787 4.699735 CACGCCCATAATATTATGCAGGAA 59.300 41.667 24.38 0.00 39.30 3.36
738 788 5.357878 CACGCCCATAATATTATGCAGGAAT 59.642 40.000 24.38 12.74 39.30 3.01
873 924 1.335872 GCACCATCCAAAGTCCAAACG 60.336 52.381 0.00 0.00 0.00 3.60
1042 1094 1.677966 CGTTCTCTCACCTCCCCGA 60.678 63.158 0.00 0.00 0.00 5.14
1044 1096 0.612453 GTTCTCTCACCTCCCCGAGT 60.612 60.000 0.00 0.00 0.00 4.18
1191 1243 3.917760 GGTCAGATCCCGCTCCCG 61.918 72.222 0.00 0.00 0.00 5.14
1249 1313 2.683968 TGCCGATATAAACGATGCCTC 58.316 47.619 0.00 0.00 0.00 4.70
1299 1365 0.602562 GCCGGGAGATCTGAGAGATG 59.397 60.000 2.18 0.00 34.53 2.90
1324 1390 0.611714 GTCGTTCTGCCCCTCCTTTA 59.388 55.000 0.00 0.00 0.00 1.85
1353 1421 0.250727 TAACTGTTGGGCTCAGGTGC 60.251 55.000 2.69 0.00 37.25 5.01
1456 1534 1.609580 GCATGACACCTTGGGTACGAA 60.610 52.381 0.00 0.00 32.11 3.85
1548 1626 5.464722 TGACGTATAACTACTGGATCTCGTC 59.535 44.000 0.00 0.00 42.32 4.20
1668 1748 0.036164 TGTTGCATTGGGTAGCTCGT 59.964 50.000 0.00 0.00 0.00 4.18
1787 1871 6.385843 TGTAATCAATTGATTTGTTGGTCCG 58.614 36.000 32.57 0.00 41.64 4.79
1804 1888 2.447887 CGCTGTCGTGCTGATGTCC 61.448 63.158 0.00 0.00 0.00 4.02
1869 1954 4.442192 GGCAGTCTATCAAGGACAAGGTAG 60.442 50.000 0.00 0.00 36.29 3.18
1946 2031 4.832266 TGGTTCTTGTTTTCCATATGCTGT 59.168 37.500 0.00 0.00 0.00 4.40
1957 2042 2.552743 CCATATGCTGTCAGGCTGATTG 59.447 50.000 21.84 16.68 0.00 2.67
2032 2117 1.617357 GACTTGGGAGTTCTACACCGT 59.383 52.381 0.00 0.00 35.88 4.83
2195 2280 5.456497 CGATTTATGTAGCCTGCAATTTGTG 59.544 40.000 0.00 0.00 0.00 3.33
2319 2404 6.582677 ACGAGGGAGATATCATTTCACTAG 57.417 41.667 5.32 3.64 0.00 2.57
2442 2527 7.620880 TGTTGTCCTATAGTGCTGTTCTAATT 58.379 34.615 0.00 0.00 0.00 1.40
2485 2570 4.448537 TGTGGCTATTAAATGTGCAACC 57.551 40.909 0.00 0.00 34.36 3.77
2539 2624 6.330004 TGCAGCTCAATTATTTGTTCTTCA 57.670 33.333 0.00 0.00 34.32 3.02
2848 2934 2.029918 CCAAAGCTTGTTCCAGGTAAGC 60.030 50.000 0.00 14.27 45.33 3.09
2889 2976 3.600388 CCTCCGATTCATATTACCTGCC 58.400 50.000 0.00 0.00 0.00 4.85
3161 3250 9.423061 GTTGCATAATCACTCCACTTAAAATTT 57.577 29.630 0.00 0.00 0.00 1.82
3245 3334 1.807142 GAGAACTGGTGCTAGCAAACC 59.193 52.381 21.29 18.06 36.96 3.27
3437 3535 9.512588 AATATTTGCATTTTGGTGTAAAATCCA 57.487 25.926 0.00 0.00 44.93 3.41
3818 4078 5.009710 TGGTAGGTATGAACATCGTCTCATC 59.990 44.000 0.00 0.00 34.21 2.92
3928 4188 0.308993 GCTCAAGGTCACAACACTGC 59.691 55.000 0.00 0.00 0.00 4.40
4154 4415 7.563556 TGGTCATATCCATGTCAGTACTTCTAA 59.436 37.037 0.00 0.00 33.57 2.10
4384 4645 4.080687 ACTTCTATATCTCTACCGGTGCC 58.919 47.826 19.93 0.00 0.00 5.01
4396 4657 2.519302 GGTGCCAGTGTGCAACCT 60.519 61.111 9.71 0.00 43.24 3.50
4430 4691 5.367352 ACCATGTATACGAGGGTAATTTCCA 59.633 40.000 15.42 0.00 31.15 3.53
4441 4702 5.454966 AGGGTAATTTCCACTTTGTTCAGT 58.545 37.500 3.30 0.00 0.00 3.41
4442 4703 5.897250 AGGGTAATTTCCACTTTGTTCAGTT 59.103 36.000 3.30 0.00 0.00 3.16
4443 4704 7.064229 AGGGTAATTTCCACTTTGTTCAGTTA 58.936 34.615 3.30 0.00 0.00 2.24
4444 4705 7.728532 AGGGTAATTTCCACTTTGTTCAGTTAT 59.271 33.333 3.30 0.00 0.00 1.89
4445 4706 9.016438 GGGTAATTTCCACTTTGTTCAGTTATA 57.984 33.333 3.30 0.00 0.00 0.98
4446 4707 9.836076 GGTAATTTCCACTTTGTTCAGTTATAC 57.164 33.333 0.00 0.00 0.00 1.47
4449 4710 8.691661 ATTTCCACTTTGTTCAGTTATACTGT 57.308 30.769 6.71 0.00 46.03 3.55
4450 4711 9.787435 ATTTCCACTTTGTTCAGTTATACTGTA 57.213 29.630 6.71 0.00 46.03 2.74
4451 4712 9.787435 TTTCCACTTTGTTCAGTTATACTGTAT 57.213 29.630 5.53 5.53 46.03 2.29
4452 4713 8.997621 TCCACTTTGTTCAGTTATACTGTATC 57.002 34.615 3.09 0.00 46.03 2.24
4453 4714 8.590204 TCCACTTTGTTCAGTTATACTGTATCA 58.410 33.333 3.09 0.00 46.03 2.15
4454 4715 8.873830 CCACTTTGTTCAGTTATACTGTATCAG 58.126 37.037 3.09 0.00 46.03 2.90
4455 4716 9.424319 CACTTTGTTCAGTTATACTGTATCAGT 57.576 33.333 3.09 7.54 46.03 3.41
4456 4717 9.424319 ACTTTGTTCAGTTATACTGTATCAGTG 57.576 33.333 11.92 7.00 46.03 3.66
4457 4718 9.639601 CTTTGTTCAGTTATACTGTATCAGTGA 57.360 33.333 13.05 13.05 46.03 3.41
4458 4719 8.981724 TTGTTCAGTTATACTGTATCAGTGAC 57.018 34.615 15.59 12.26 46.03 3.67
4459 4720 8.117813 TGTTCAGTTATACTGTATCAGTGACA 57.882 34.615 15.59 13.93 46.03 3.58
4460 4721 8.244113 TGTTCAGTTATACTGTATCAGTGACAG 58.756 37.037 15.59 9.77 46.03 3.51
4714 4995 6.058183 GGATCCTCAAAGTATGTTATGCTGT 58.942 40.000 3.84 0.00 0.00 4.40
4953 5234 5.741982 GTCATTTTGGTTATGTCGCCATTAC 59.258 40.000 0.00 0.00 34.37 1.89
4969 5250 4.142093 GCCATTACCTGTCATGCTTTCATT 60.142 41.667 0.00 0.00 0.00 2.57
4970 5251 5.345702 CCATTACCTGTCATGCTTTCATTG 58.654 41.667 0.00 0.00 0.00 2.82
5126 5407 2.675348 GTCATGTCTAACCAGCAGCTTC 59.325 50.000 0.00 0.00 0.00 3.86
5282 5569 6.142320 GTCGAGTTTGAAACCAATTTTGCTAG 59.858 38.462 4.14 0.00 0.00 3.42
5283 5570 5.977129 CGAGTTTGAAACCAATTTTGCTAGT 59.023 36.000 4.14 0.00 0.00 2.57
5284 5571 6.142320 CGAGTTTGAAACCAATTTTGCTAGTC 59.858 38.462 4.14 0.00 0.00 2.59
5285 5572 7.112452 AGTTTGAAACCAATTTTGCTAGTCT 57.888 32.000 4.14 0.00 0.00 3.24
5286 5573 7.203218 AGTTTGAAACCAATTTTGCTAGTCTC 58.797 34.615 4.14 0.00 0.00 3.36
5287 5574 6.707440 TTGAAACCAATTTTGCTAGTCTCA 57.293 33.333 0.00 0.00 0.00 3.27
5288 5575 6.317789 TGAAACCAATTTTGCTAGTCTCAG 57.682 37.500 0.00 0.00 0.00 3.35
5289 5576 5.827797 TGAAACCAATTTTGCTAGTCTCAGT 59.172 36.000 0.00 0.00 0.00 3.41
5322 5612 9.202273 AGAATTTTCTCAGTCGATGCTATATTC 57.798 33.333 0.00 0.00 29.94 1.75
5389 5681 7.530426 TTTTATATACTACTCCCTTCGTCCC 57.470 40.000 0.00 0.00 0.00 4.46
5390 5682 4.736611 ATATACTACTCCCTTCGTCCCA 57.263 45.455 0.00 0.00 0.00 4.37
5391 5683 3.614568 ATACTACTCCCTTCGTCCCAT 57.385 47.619 0.00 0.00 0.00 4.00
5392 5684 4.736611 ATACTACTCCCTTCGTCCCATA 57.263 45.455 0.00 0.00 0.00 2.74
5393 5685 3.393426 ACTACTCCCTTCGTCCCATAA 57.607 47.619 0.00 0.00 0.00 1.90
5394 5686 3.924922 ACTACTCCCTTCGTCCCATAAT 58.075 45.455 0.00 0.00 0.00 1.28
5395 5687 5.070823 ACTACTCCCTTCGTCCCATAATA 57.929 43.478 0.00 0.00 0.00 0.98
5396 5688 5.652324 ACTACTCCCTTCGTCCCATAATAT 58.348 41.667 0.00 0.00 0.00 1.28
5397 5689 6.797707 ACTACTCCCTTCGTCCCATAATATA 58.202 40.000 0.00 0.00 0.00 0.86
5398 5690 7.243824 ACTACTCCCTTCGTCCCATAATATAA 58.756 38.462 0.00 0.00 0.00 0.98
5399 5691 6.607004 ACTCCCTTCGTCCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
5400 5692 6.320518 ACTCCCTTCGTCCCATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
5401 5693 6.785963 ACTCCCTTCGTCCCATAATATAAGAA 59.214 38.462 0.00 0.00 0.00 2.52
5402 5694 7.001099 TCCCTTCGTCCCATAATATAAGAAC 57.999 40.000 0.00 0.00 0.00 3.01
5403 5695 5.867716 CCCTTCGTCCCATAATATAAGAACG 59.132 44.000 0.00 0.00 0.00 3.95
5404 5696 6.453092 CCTTCGTCCCATAATATAAGAACGT 58.547 40.000 0.00 0.00 0.00 3.99
5405 5697 6.927381 CCTTCGTCCCATAATATAAGAACGTT 59.073 38.462 0.00 0.00 0.00 3.99
5406 5698 7.440255 CCTTCGTCCCATAATATAAGAACGTTT 59.560 37.037 0.46 0.00 0.00 3.60
5407 5699 8.721019 TTCGTCCCATAATATAAGAACGTTTT 57.279 30.769 0.46 0.00 0.00 2.43
5408 5700 8.721019 TCGTCCCATAATATAAGAACGTTTTT 57.279 30.769 9.22 9.22 0.00 1.94
5409 5701 9.814899 TCGTCCCATAATATAAGAACGTTTTTA 57.185 29.630 13.02 13.02 0.00 1.52
5421 5713 9.925268 ATAAGAACGTTTTTAACACTTGTGTAG 57.075 29.630 14.41 0.00 0.00 2.74
5422 5714 7.368480 AGAACGTTTTTAACACTTGTGTAGT 57.632 32.000 0.46 0.00 37.68 2.73
5434 5726 5.616488 ACTTGTGTAGTGTCAAAAACGTT 57.384 34.783 0.00 0.00 35.19 3.99
5435 5727 5.624292 ACTTGTGTAGTGTCAAAAACGTTC 58.376 37.500 0.00 0.00 35.19 3.95
5436 5728 5.410439 ACTTGTGTAGTGTCAAAAACGTTCT 59.590 36.000 0.00 0.00 35.19 3.01
5437 5729 5.866335 TGTGTAGTGTCAAAAACGTTCTT 57.134 34.783 0.00 0.00 0.00 2.52
5438 5730 6.964741 TGTGTAGTGTCAAAAACGTTCTTA 57.035 33.333 0.00 0.00 0.00 2.10
5439 5731 7.542534 TGTGTAGTGTCAAAAACGTTCTTAT 57.457 32.000 0.00 0.00 0.00 1.73
5440 5732 8.645730 TGTGTAGTGTCAAAAACGTTCTTATA 57.354 30.769 0.00 0.00 0.00 0.98
5441 5733 9.263538 TGTGTAGTGTCAAAAACGTTCTTATAT 57.736 29.630 0.00 0.00 0.00 0.86
5446 5738 8.073768 AGTGTCAAAAACGTTCTTATATTGTGG 58.926 33.333 0.00 0.00 0.00 4.17
5447 5739 7.325097 GTGTCAAAAACGTTCTTATATTGTGGG 59.675 37.037 0.00 0.00 0.00 4.61
5448 5740 7.228906 TGTCAAAAACGTTCTTATATTGTGGGA 59.771 33.333 0.00 0.00 0.00 4.37
5449 5741 7.536281 GTCAAAAACGTTCTTATATTGTGGGAC 59.464 37.037 0.00 0.00 0.00 4.46
5450 5742 5.789710 AAACGTTCTTATATTGTGGGACG 57.210 39.130 0.00 0.00 0.00 4.79
5451 5743 3.788937 ACGTTCTTATATTGTGGGACGG 58.211 45.455 0.00 0.00 0.00 4.79
5452 5744 3.448301 ACGTTCTTATATTGTGGGACGGA 59.552 43.478 0.00 0.00 0.00 4.69
5453 5745 4.049186 CGTTCTTATATTGTGGGACGGAG 58.951 47.826 0.00 0.00 0.00 4.63
5454 5746 4.377897 GTTCTTATATTGTGGGACGGAGG 58.622 47.826 0.00 0.00 0.00 4.30
5455 5747 2.969950 TCTTATATTGTGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
5456 5748 2.779429 TATATTGTGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
5457 5749 1.424638 ATATTGTGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
5461 5753 0.396695 TGTGGGACGGAGGGAGTATC 60.397 60.000 0.00 0.00 0.00 2.24
5467 5759 2.657143 GACGGAGGGAGTATCTCACTT 58.343 52.381 2.99 0.00 45.16 3.16
5525 5818 5.051816 AGCCACACTCAAATTGAATGTTTG 58.948 37.500 7.39 3.74 34.28 2.93
5526 5819 4.318974 GCCACACTCAAATTGAATGTTTGC 60.319 41.667 7.39 9.72 34.28 3.68
5527 5820 5.051816 CCACACTCAAATTGAATGTTTGCT 58.948 37.500 7.39 0.00 34.28 3.91
5528 5821 6.215121 CCACACTCAAATTGAATGTTTGCTA 58.785 36.000 7.39 0.00 34.28 3.49
5573 5866 4.997905 TTTCATAGATTAGCAGCATCGC 57.002 40.909 0.00 0.00 0.00 4.58
5600 5893 5.616270 TGTAGAACCTTACATTGCAGAACA 58.384 37.500 0.00 0.00 0.00 3.18
5613 5906 6.873076 ACATTGCAGAACAAAAGAAAGTTCAA 59.127 30.769 7.88 0.00 44.94 2.69
5637 5930 2.353011 GCTGCTGCATTAAGGCAAGAAA 60.353 45.455 16.45 1.35 44.40 2.52
5688 5981 9.626045 AACTTGTAAGAAAAGTTTTGACTTCTG 57.374 29.630 5.36 0.00 43.60 3.02
5701 5994 9.507329 AGTTTTGACTTCTGATTGCTAATCTAA 57.493 29.630 9.34 4.76 38.72 2.10
5706 5999 7.550551 TGACTTCTGATTGCTAATCTAACTTGG 59.449 37.037 9.34 0.00 38.72 3.61
5713 6007 5.222079 TGCTAATCTAACTTGGTGTGTGA 57.778 39.130 0.00 0.00 0.00 3.58
5769 6063 7.651027 ATTCTTGTAGCATCAAAGGCTAAAT 57.349 32.000 0.00 0.00 44.75 1.40
5800 6094 0.454600 CATGCAAGCTGTGGCCTTAG 59.545 55.000 3.32 3.02 39.73 2.18
5807 6101 0.250727 GCTGTGGCCTTAGTGTCCAA 60.251 55.000 3.32 0.00 0.00 3.53
5856 6150 2.231215 GCTTGGATAGCTGATGTCGT 57.769 50.000 0.00 0.00 46.77 4.34
5857 6151 2.131183 GCTTGGATAGCTGATGTCGTC 58.869 52.381 0.00 0.00 46.77 4.20
5858 6152 2.389059 CTTGGATAGCTGATGTCGTCG 58.611 52.381 0.00 0.00 0.00 5.12
5859 6153 0.668535 TGGATAGCTGATGTCGTCGG 59.331 55.000 0.00 0.00 36.23 4.79
5860 6154 0.669077 GGATAGCTGATGTCGTCGGT 59.331 55.000 0.00 0.00 35.53 4.69
5861 6155 1.600663 GGATAGCTGATGTCGTCGGTG 60.601 57.143 0.00 0.00 35.53 4.94
5862 6156 0.385751 ATAGCTGATGTCGTCGGTGG 59.614 55.000 0.00 0.00 35.53 4.61
5863 6157 1.663379 TAGCTGATGTCGTCGGTGGG 61.663 60.000 0.00 0.00 35.53 4.61
5864 6158 2.184322 CTGATGTCGTCGGTGGGG 59.816 66.667 0.00 0.00 0.00 4.96
5865 6159 2.283316 TGATGTCGTCGGTGGGGA 60.283 61.111 0.00 0.00 0.00 4.81
5866 6160 2.284798 CTGATGTCGTCGGTGGGGAG 62.285 65.000 0.00 0.00 0.00 4.30
5867 6161 2.036731 ATGTCGTCGGTGGGGAGA 59.963 61.111 0.00 0.00 0.00 3.71
5868 6162 2.280823 GATGTCGTCGGTGGGGAGAC 62.281 65.000 0.00 0.00 0.00 3.36
5869 6163 4.112341 GTCGTCGGTGGGGAGACG 62.112 72.222 11.17 11.17 41.74 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.672188 CGGTGTTGCAACGTTCATAA 57.328 45.000 23.79 2.11 39.94 1.90
8 9 2.141535 TTTAATGGCGGTGTTGCAAC 57.858 45.000 22.83 22.83 36.28 4.17
9 10 2.474816 GTTTTAATGGCGGTGTTGCAA 58.525 42.857 0.00 0.00 36.28 4.08
10 11 1.269831 GGTTTTAATGGCGGTGTTGCA 60.270 47.619 0.00 0.00 36.28 4.08
11 12 1.000394 AGGTTTTAATGGCGGTGTTGC 60.000 47.619 0.00 0.00 0.00 4.17
12 13 4.420168 CATAGGTTTTAATGGCGGTGTTG 58.580 43.478 0.00 0.00 0.00 3.33
13 14 3.119280 GCATAGGTTTTAATGGCGGTGTT 60.119 43.478 0.00 0.00 0.00 3.32
14 15 2.425668 GCATAGGTTTTAATGGCGGTGT 59.574 45.455 0.00 0.00 0.00 4.16
15 16 2.687935 AGCATAGGTTTTAATGGCGGTG 59.312 45.455 0.00 0.00 0.00 4.94
16 17 2.949644 GAGCATAGGTTTTAATGGCGGT 59.050 45.455 0.00 0.00 0.00 5.68
17 18 2.032030 CGAGCATAGGTTTTAATGGCGG 60.032 50.000 0.00 0.00 0.00 6.13
18 19 2.602217 GCGAGCATAGGTTTTAATGGCG 60.602 50.000 0.00 0.00 0.00 5.69
19 20 2.602217 CGCGAGCATAGGTTTTAATGGC 60.602 50.000 0.00 0.00 0.00 4.40
20 21 2.612212 ACGCGAGCATAGGTTTTAATGG 59.388 45.455 15.93 0.00 0.00 3.16
21 22 3.607439 CACGCGAGCATAGGTTTTAATG 58.393 45.455 15.93 0.00 0.00 1.90
22 23 2.031683 GCACGCGAGCATAGGTTTTAAT 59.968 45.455 23.72 0.00 0.00 1.40
23 24 1.395608 GCACGCGAGCATAGGTTTTAA 59.604 47.619 23.72 0.00 0.00 1.52
24 25 1.003851 GCACGCGAGCATAGGTTTTA 58.996 50.000 23.72 0.00 0.00 1.52
25 26 1.644786 GGCACGCGAGCATAGGTTTT 61.645 55.000 28.89 0.00 35.83 2.43
26 27 2.106683 GGCACGCGAGCATAGGTTT 61.107 57.895 28.89 0.00 35.83 3.27
27 28 2.511600 GGCACGCGAGCATAGGTT 60.512 61.111 28.89 0.00 35.83 3.50
28 29 4.530857 GGGCACGCGAGCATAGGT 62.531 66.667 28.89 0.00 35.83 3.08
38 39 0.742505 GGGTTAATAAAGGGGCACGC 59.257 55.000 0.00 0.00 43.76 5.34
39 40 1.746787 GTGGGTTAATAAAGGGGCACG 59.253 52.381 0.00 0.00 0.00 5.34
40 41 2.104967 GGTGGGTTAATAAAGGGGCAC 58.895 52.381 0.00 0.00 0.00 5.01
41 42 2.004589 AGGTGGGTTAATAAAGGGGCA 58.995 47.619 0.00 0.00 0.00 5.36
42 43 2.764010 CAAGGTGGGTTAATAAAGGGGC 59.236 50.000 0.00 0.00 0.00 5.80
43 44 2.764010 GCAAGGTGGGTTAATAAAGGGG 59.236 50.000 0.00 0.00 0.00 4.79
44 45 2.764010 GGCAAGGTGGGTTAATAAAGGG 59.236 50.000 0.00 0.00 0.00 3.95
45 46 2.425668 CGGCAAGGTGGGTTAATAAAGG 59.574 50.000 0.00 0.00 0.00 3.11
46 47 2.159296 GCGGCAAGGTGGGTTAATAAAG 60.159 50.000 0.00 0.00 0.00 1.85
47 48 1.819903 GCGGCAAGGTGGGTTAATAAA 59.180 47.619 0.00 0.00 0.00 1.40
48 49 1.004979 AGCGGCAAGGTGGGTTAATAA 59.995 47.619 1.45 0.00 0.00 1.40
49 50 0.621609 AGCGGCAAGGTGGGTTAATA 59.378 50.000 1.45 0.00 0.00 0.98
50 51 0.679960 GAGCGGCAAGGTGGGTTAAT 60.680 55.000 1.45 0.00 0.00 1.40
51 52 1.302993 GAGCGGCAAGGTGGGTTAA 60.303 57.895 1.45 0.00 0.00 2.01
52 53 2.349755 GAGCGGCAAGGTGGGTTA 59.650 61.111 1.45 0.00 0.00 2.85
53 54 3.884774 TGAGCGGCAAGGTGGGTT 61.885 61.111 1.45 0.00 0.00 4.11
54 55 4.643387 GTGAGCGGCAAGGTGGGT 62.643 66.667 1.45 0.00 0.00 4.51
56 57 4.641645 TGGTGAGCGGCAAGGTGG 62.642 66.667 1.45 0.00 0.00 4.61
57 58 3.357079 GTGGTGAGCGGCAAGGTG 61.357 66.667 1.45 0.00 0.00 4.00
58 59 1.764571 TAAGTGGTGAGCGGCAAGGT 61.765 55.000 1.45 0.00 0.00 3.50
59 60 1.003839 TAAGTGGTGAGCGGCAAGG 60.004 57.895 1.45 0.00 0.00 3.61
60 61 1.298859 GGTAAGTGGTGAGCGGCAAG 61.299 60.000 1.45 0.00 0.00 4.01
61 62 1.302192 GGTAAGTGGTGAGCGGCAA 60.302 57.895 1.45 0.00 0.00 4.52
62 63 2.345991 GGTAAGTGGTGAGCGGCA 59.654 61.111 1.45 0.00 0.00 5.69
63 64 2.436115 GGGTAAGTGGTGAGCGGC 60.436 66.667 0.00 0.00 0.00 6.53
64 65 1.079127 CTGGGTAAGTGGTGAGCGG 60.079 63.158 0.00 0.00 0.00 5.52
65 66 0.389948 GACTGGGTAAGTGGTGAGCG 60.390 60.000 0.00 0.00 40.07 5.03
66 67 0.977395 AGACTGGGTAAGTGGTGAGC 59.023 55.000 0.00 0.00 40.07 4.26
67 68 2.494073 GAGAGACTGGGTAAGTGGTGAG 59.506 54.545 0.00 0.00 40.07 3.51
68 69 2.526432 GAGAGACTGGGTAAGTGGTGA 58.474 52.381 0.00 0.00 40.07 4.02
69 70 1.202582 CGAGAGACTGGGTAAGTGGTG 59.797 57.143 0.00 0.00 40.07 4.17
70 71 1.546961 CGAGAGACTGGGTAAGTGGT 58.453 55.000 0.00 0.00 40.07 4.16
71 72 0.173708 GCGAGAGACTGGGTAAGTGG 59.826 60.000 0.00 0.00 40.07 4.00
72 73 1.133407 GAGCGAGAGACTGGGTAAGTG 59.867 57.143 0.00 0.00 40.07 3.16
73 74 1.004979 AGAGCGAGAGACTGGGTAAGT 59.995 52.381 0.00 0.00 43.85 2.24
74 75 1.757682 AGAGCGAGAGACTGGGTAAG 58.242 55.000 0.00 0.00 0.00 2.34
75 76 2.093106 GAAGAGCGAGAGACTGGGTAA 58.907 52.381 0.00 0.00 0.00 2.85
76 77 1.682394 GGAAGAGCGAGAGACTGGGTA 60.682 57.143 0.00 0.00 0.00 3.69
77 78 0.968393 GGAAGAGCGAGAGACTGGGT 60.968 60.000 0.00 0.00 0.00 4.51
78 79 0.682855 AGGAAGAGCGAGAGACTGGG 60.683 60.000 0.00 0.00 0.00 4.45
79 80 0.738389 GAGGAAGAGCGAGAGACTGG 59.262 60.000 0.00 0.00 0.00 4.00
80 81 0.738389 GGAGGAAGAGCGAGAGACTG 59.262 60.000 0.00 0.00 0.00 3.51
81 82 0.329931 TGGAGGAAGAGCGAGAGACT 59.670 55.000 0.00 0.00 0.00 3.24
82 83 1.135228 GTTGGAGGAAGAGCGAGAGAC 60.135 57.143 0.00 0.00 0.00 3.36
83 84 1.178276 GTTGGAGGAAGAGCGAGAGA 58.822 55.000 0.00 0.00 0.00 3.10
84 85 0.174617 GGTTGGAGGAAGAGCGAGAG 59.825 60.000 0.00 0.00 0.00 3.20
85 86 0.251832 AGGTTGGAGGAAGAGCGAGA 60.252 55.000 0.00 0.00 0.00 4.04
86 87 1.475403 TAGGTTGGAGGAAGAGCGAG 58.525 55.000 0.00 0.00 0.00 5.03
87 88 1.933021 TTAGGTTGGAGGAAGAGCGA 58.067 50.000 0.00 0.00 0.00 4.93
88 89 2.555199 CATTAGGTTGGAGGAAGAGCG 58.445 52.381 0.00 0.00 0.00 5.03
89 90 2.293170 GCATTAGGTTGGAGGAAGAGC 58.707 52.381 0.00 0.00 0.00 4.09
90 91 2.239654 TGGCATTAGGTTGGAGGAAGAG 59.760 50.000 0.00 0.00 0.00 2.85
91 92 2.274542 TGGCATTAGGTTGGAGGAAGA 58.725 47.619 0.00 0.00 0.00 2.87
92 93 2.806945 TGGCATTAGGTTGGAGGAAG 57.193 50.000 0.00 0.00 0.00 3.46
93 94 2.580322 TCATGGCATTAGGTTGGAGGAA 59.420 45.455 0.00 0.00 0.00 3.36
94 95 2.204463 TCATGGCATTAGGTTGGAGGA 58.796 47.619 0.00 0.00 0.00 3.71
95 96 2.689983 GTTCATGGCATTAGGTTGGAGG 59.310 50.000 0.00 0.00 0.00 4.30
96 97 2.689983 GGTTCATGGCATTAGGTTGGAG 59.310 50.000 0.00 0.00 0.00 3.86
97 98 2.622977 GGGTTCATGGCATTAGGTTGGA 60.623 50.000 0.00 0.00 0.00 3.53
98 99 1.756538 GGGTTCATGGCATTAGGTTGG 59.243 52.381 0.00 0.00 0.00 3.77
99 100 1.756538 GGGGTTCATGGCATTAGGTTG 59.243 52.381 0.00 0.00 0.00 3.77
100 101 1.360852 TGGGGTTCATGGCATTAGGTT 59.639 47.619 0.00 0.00 0.00 3.50
101 102 1.006813 TGGGGTTCATGGCATTAGGT 58.993 50.000 0.00 0.00 0.00 3.08
102 103 1.756538 GTTGGGGTTCATGGCATTAGG 59.243 52.381 0.00 0.00 0.00 2.69
103 104 1.756538 GGTTGGGGTTCATGGCATTAG 59.243 52.381 0.00 0.00 0.00 1.73
104 105 1.621072 GGGTTGGGGTTCATGGCATTA 60.621 52.381 0.00 0.00 0.00 1.90
105 106 0.909133 GGGTTGGGGTTCATGGCATT 60.909 55.000 0.00 0.00 0.00 3.56
106 107 1.306056 GGGTTGGGGTTCATGGCAT 60.306 57.895 0.00 0.00 0.00 4.40
107 108 2.119391 GGGTTGGGGTTCATGGCA 59.881 61.111 0.00 0.00 0.00 4.92
108 109 2.683572 GGGGTTGGGGTTCATGGC 60.684 66.667 0.00 0.00 0.00 4.40
109 110 1.157276 TTGGGGTTGGGGTTCATGG 59.843 57.895 0.00 0.00 0.00 3.66
110 111 1.191489 GGTTGGGGTTGGGGTTCATG 61.191 60.000 0.00 0.00 0.00 3.07
111 112 1.157513 GGTTGGGGTTGGGGTTCAT 59.842 57.895 0.00 0.00 0.00 2.57
112 113 2.609920 GGTTGGGGTTGGGGTTCA 59.390 61.111 0.00 0.00 0.00 3.18
113 114 2.203728 GGGTTGGGGTTGGGGTTC 60.204 66.667 0.00 0.00 0.00 3.62
114 115 2.647949 TTGGGTTGGGGTTGGGGTT 61.648 57.895 0.00 0.00 0.00 4.11
115 116 3.036959 TTGGGTTGGGGTTGGGGT 61.037 61.111 0.00 0.00 0.00 4.95
116 117 2.525629 GTTGGGTTGGGGTTGGGG 60.526 66.667 0.00 0.00 0.00 4.96
117 118 2.525629 GGTTGGGTTGGGGTTGGG 60.526 66.667 0.00 0.00 0.00 4.12
118 119 2.525629 GGGTTGGGTTGGGGTTGG 60.526 66.667 0.00 0.00 0.00 3.77
119 120 0.983378 TTTGGGTTGGGTTGGGGTTG 60.983 55.000 0.00 0.00 0.00 3.77
120 121 0.983905 GTTTGGGTTGGGTTGGGGTT 60.984 55.000 0.00 0.00 0.00 4.11
121 122 1.383386 GTTTGGGTTGGGTTGGGGT 60.383 57.895 0.00 0.00 0.00 4.95
122 123 2.144078 GGTTTGGGTTGGGTTGGGG 61.144 63.158 0.00 0.00 0.00 4.96
123 124 2.144078 GGGTTTGGGTTGGGTTGGG 61.144 63.158 0.00 0.00 0.00 4.12
124 125 2.144078 GGGGTTTGGGTTGGGTTGG 61.144 63.158 0.00 0.00 0.00 3.77
125 126 0.983378 TTGGGGTTTGGGTTGGGTTG 60.983 55.000 0.00 0.00 0.00 3.77
126 127 0.029577 ATTGGGGTTTGGGTTGGGTT 60.030 50.000 0.00 0.00 0.00 4.11
127 128 0.766288 CATTGGGGTTTGGGTTGGGT 60.766 55.000 0.00 0.00 0.00 4.51
128 129 2.065483 CATTGGGGTTTGGGTTGGG 58.935 57.895 0.00 0.00 0.00 4.12
129 130 1.374568 GCATTGGGGTTTGGGTTGG 59.625 57.895 0.00 0.00 0.00 3.77
130 131 1.374568 GGCATTGGGGTTTGGGTTG 59.625 57.895 0.00 0.00 0.00 3.77
131 132 0.695803 TTGGCATTGGGGTTTGGGTT 60.696 50.000 0.00 0.00 0.00 4.11
132 133 1.074167 TTGGCATTGGGGTTTGGGT 60.074 52.632 0.00 0.00 0.00 4.51
133 134 1.374568 GTTGGCATTGGGGTTTGGG 59.625 57.895 0.00 0.00 0.00 4.12
134 135 1.374568 GGTTGGCATTGGGGTTTGG 59.625 57.895 0.00 0.00 0.00 3.28
135 136 1.374568 GGGTTGGCATTGGGGTTTG 59.625 57.895 0.00 0.00 0.00 2.93
136 137 1.845664 GGGGTTGGCATTGGGGTTT 60.846 57.895 0.00 0.00 0.00 3.27
137 138 2.203922 GGGGTTGGCATTGGGGTT 60.204 61.111 0.00 0.00 0.00 4.11
138 139 2.746947 GAAGGGGTTGGCATTGGGGT 62.747 60.000 0.00 0.00 0.00 4.95
139 140 1.989508 GAAGGGGTTGGCATTGGGG 60.990 63.158 0.00 0.00 0.00 4.96
140 141 1.989508 GGAAGGGGTTGGCATTGGG 60.990 63.158 0.00 0.00 0.00 4.12
141 142 1.989508 GGGAAGGGGTTGGCATTGG 60.990 63.158 0.00 0.00 0.00 3.16
142 143 0.545071 AAGGGAAGGGGTTGGCATTG 60.545 55.000 0.00 0.00 0.00 2.82
143 144 0.545071 CAAGGGAAGGGGTTGGCATT 60.545 55.000 0.00 0.00 0.00 3.56
144 145 1.079073 CAAGGGAAGGGGTTGGCAT 59.921 57.895 0.00 0.00 0.00 4.40
145 146 2.525592 CAAGGGAAGGGGTTGGCA 59.474 61.111 0.00 0.00 0.00 4.92
146 147 2.283894 CCAAGGGAAGGGGTTGGC 60.284 66.667 0.00 0.00 34.65 4.52
147 148 2.445155 CCCAAGGGAAGGGGTTGG 59.555 66.667 0.00 0.00 42.90 3.77
158 159 0.757935 CTCCATCCAATGCCCCAAGG 60.758 60.000 0.00 0.00 0.00 3.61
159 160 0.757935 CCTCCATCCAATGCCCCAAG 60.758 60.000 0.00 0.00 0.00 3.61
160 161 1.310715 CCTCCATCCAATGCCCCAA 59.689 57.895 0.00 0.00 0.00 4.12
161 162 2.703362 CCCTCCATCCAATGCCCCA 61.703 63.158 0.00 0.00 0.00 4.96
162 163 1.733387 ATCCCTCCATCCAATGCCCC 61.733 60.000 0.00 0.00 0.00 5.80
163 164 0.189327 AATCCCTCCATCCAATGCCC 59.811 55.000 0.00 0.00 0.00 5.36
164 165 1.966354 GAAATCCCTCCATCCAATGCC 59.034 52.381 0.00 0.00 0.00 4.40
165 166 2.954792 AGAAATCCCTCCATCCAATGC 58.045 47.619 0.00 0.00 0.00 3.56
166 167 3.893813 GGAAGAAATCCCTCCATCCAATG 59.106 47.826 0.00 0.00 43.00 2.82
167 168 4.190370 GGAAGAAATCCCTCCATCCAAT 57.810 45.455 0.00 0.00 43.00 3.16
168 169 3.669939 GGAAGAAATCCCTCCATCCAA 57.330 47.619 0.00 0.00 43.00 3.53
179 180 2.609916 GCGAGCAACCTAGGAAGAAATC 59.390 50.000 17.98 4.71 0.00 2.17
180 181 2.237392 AGCGAGCAACCTAGGAAGAAAT 59.763 45.455 17.98 0.00 0.00 2.17
181 182 1.623811 AGCGAGCAACCTAGGAAGAAA 59.376 47.619 17.98 0.00 0.00 2.52
182 183 1.066858 CAGCGAGCAACCTAGGAAGAA 60.067 52.381 17.98 0.00 0.00 2.52
183 184 0.532573 CAGCGAGCAACCTAGGAAGA 59.467 55.000 17.98 0.00 0.00 2.87
184 185 0.460987 CCAGCGAGCAACCTAGGAAG 60.461 60.000 17.98 8.37 0.00 3.46
185 186 1.596934 CCAGCGAGCAACCTAGGAA 59.403 57.895 17.98 0.00 0.00 3.36
186 187 2.359169 CCCAGCGAGCAACCTAGGA 61.359 63.158 17.98 0.00 0.00 2.94
187 188 2.187946 CCCAGCGAGCAACCTAGG 59.812 66.667 7.41 7.41 0.00 3.02
188 189 1.448540 CACCCAGCGAGCAACCTAG 60.449 63.158 0.00 0.00 0.00 3.02
189 190 1.911269 TCACCCAGCGAGCAACCTA 60.911 57.895 0.00 0.00 0.00 3.08
190 191 3.241530 TCACCCAGCGAGCAACCT 61.242 61.111 0.00 0.00 0.00 3.50
191 192 3.050275 GTCACCCAGCGAGCAACC 61.050 66.667 0.00 0.00 0.00 3.77
192 193 3.050275 GGTCACCCAGCGAGCAAC 61.050 66.667 0.00 0.00 0.00 4.17
209 210 2.890474 GCCATGACTACCGGTGCG 60.890 66.667 19.93 10.99 0.00 5.34
210 211 2.644555 ATCGCCATGACTACCGGTGC 62.645 60.000 19.93 9.27 0.00 5.01
211 212 0.875908 CATCGCCATGACTACCGGTG 60.876 60.000 19.93 10.05 30.57 4.94
246 247 2.004733 GGGGAATCGAAGTAAACACCG 58.995 52.381 0.00 0.00 0.00 4.94
250 251 1.395954 GCACGGGGAATCGAAGTAAAC 59.604 52.381 0.00 0.00 0.00 2.01
251 252 1.676615 GGCACGGGGAATCGAAGTAAA 60.677 52.381 0.00 0.00 0.00 2.01
252 253 0.108041 GGCACGGGGAATCGAAGTAA 60.108 55.000 0.00 0.00 0.00 2.24
253 254 1.518774 GGCACGGGGAATCGAAGTA 59.481 57.895 0.00 0.00 0.00 2.24
254 255 2.267961 GGCACGGGGAATCGAAGT 59.732 61.111 0.00 0.00 0.00 3.01
255 256 2.513897 GGGCACGGGGAATCGAAG 60.514 66.667 0.00 0.00 0.00 3.79
256 257 4.104183 GGGGCACGGGGAATCGAA 62.104 66.667 0.00 0.00 0.00 3.71
257 258 3.682644 TAGGGGCACGGGGAATCGA 62.683 63.158 0.00 0.00 0.00 3.59
258 259 2.737881 TTAGGGGCACGGGGAATCG 61.738 63.158 0.00 0.00 0.00 3.34
346 358 2.559840 CAGCAGCACTTCGGCAAG 59.440 61.111 0.00 0.00 38.40 4.01
375 390 2.046892 CGACCTCCTGCCACCTTG 60.047 66.667 0.00 0.00 0.00 3.61
384 399 0.318762 GAACAGCAAGTCGACCTCCT 59.681 55.000 13.01 2.60 0.00 3.69
449 477 2.192861 CCCTCATCGCTCGCTCTCT 61.193 63.158 0.00 0.00 0.00 3.10
455 483 3.309388 CAGTTATTACCCTCATCGCTCG 58.691 50.000 0.00 0.00 0.00 5.03
457 485 2.224305 GGCAGTTATTACCCTCATCGCT 60.224 50.000 0.00 0.00 0.00 4.93
458 486 2.143925 GGCAGTTATTACCCTCATCGC 58.856 52.381 0.00 0.00 0.00 4.58
459 487 2.404215 CGGCAGTTATTACCCTCATCG 58.596 52.381 0.00 0.00 0.00 3.84
460 488 2.767505 CCGGCAGTTATTACCCTCATC 58.232 52.381 0.00 0.00 0.00 2.92
461 489 1.202770 GCCGGCAGTTATTACCCTCAT 60.203 52.381 24.80 0.00 0.00 2.90
496 541 2.348998 CACCCTCAAGAAGCCGCT 59.651 61.111 0.00 0.00 0.00 5.52
580 628 1.567504 CAGTCCCGCGAATTACGATT 58.432 50.000 8.23 0.00 45.77 3.34
582 630 1.140161 CCAGTCCCGCGAATTACGA 59.860 57.895 8.23 0.00 45.77 3.43
587 635 4.514577 CGAGCCAGTCCCGCGAAT 62.515 66.667 8.23 0.00 0.00 3.34
596 644 1.192146 TAAAGCACCCTCGAGCCAGT 61.192 55.000 6.99 0.59 0.00 4.00
629 677 1.977854 TGGATACACTGTTCAGCCTGT 59.022 47.619 0.00 1.21 46.17 4.00
664 714 1.071699 CCCGGGTGAGAAGAGTTTTGA 59.928 52.381 14.18 0.00 0.00 2.69
666 716 0.250770 GCCCGGGTGAGAAGAGTTTT 60.251 55.000 24.63 0.00 0.00 2.43
695 745 5.464389 GGCGTGTTTGATTATCCGTATAAGT 59.536 40.000 0.00 0.00 31.18 2.24
706 756 8.240682 GCATAATATTATGGGCGTGTTTGATTA 58.759 33.333 28.45 0.00 40.61 1.75
709 759 5.532779 TGCATAATATTATGGGCGTGTTTGA 59.467 36.000 28.45 3.59 40.61 2.69
721 771 9.416284 TGCATGATGATTCCTGCATAATATTAT 57.584 29.630 1.91 1.91 45.05 1.28
730 780 1.746787 GTGTGCATGATGATTCCTGCA 59.253 47.619 0.00 2.43 46.87 4.41
731 781 1.746787 TGTGTGCATGATGATTCCTGC 59.253 47.619 0.00 0.00 42.05 4.85
732 782 4.142249 ACATTGTGTGCATGATGATTCCTG 60.142 41.667 0.00 0.00 0.00 3.86
733 783 4.021229 ACATTGTGTGCATGATGATTCCT 58.979 39.130 0.00 0.00 0.00 3.36
734 784 4.380841 ACATTGTGTGCATGATGATTCC 57.619 40.909 0.00 0.00 0.00 3.01
735 785 5.165676 ACAACATTGTGTGCATGATGATTC 58.834 37.500 0.00 0.00 40.49 2.52
736 786 5.142061 ACAACATTGTGTGCATGATGATT 57.858 34.783 0.00 0.00 40.49 2.57
737 787 4.794278 ACAACATTGTGTGCATGATGAT 57.206 36.364 0.00 0.00 40.49 2.45
987 1039 1.812571 CAGCGCATTTAAAGACCAGGT 59.187 47.619 11.47 0.00 0.00 4.00
1249 1313 5.327091 CGACCAGAATACAAAATTCAGCAG 58.673 41.667 1.01 0.00 0.00 4.24
1299 1365 2.508663 GGGCAGAACGACGGCTAC 60.509 66.667 0.00 0.00 39.51 3.58
1324 1390 4.677182 AGCCCAACAGTTAAGATTGGAAT 58.323 39.130 12.02 0.84 44.84 3.01
1353 1421 4.457603 CCAACTACGGAGATAGATCAGAGG 59.542 50.000 0.00 0.00 0.00 3.69
1603 1682 1.289109 ACGATTGGACCGAAAGCGTG 61.289 55.000 7.02 0.00 46.67 5.34
1604 1684 1.005394 ACGATTGGACCGAAAGCGT 60.005 52.632 2.31 2.31 44.04 5.07
1677 1757 5.629079 AGTTCGACATCATTTTCTTTCCC 57.371 39.130 0.00 0.00 0.00 3.97
1787 1871 1.079543 AGGACATCAGCACGACAGC 60.080 57.895 0.00 0.00 0.00 4.40
1813 1898 4.263771 TGGTCATCTCATCGCCTATAGGTA 60.264 45.833 20.10 9.34 37.57 3.08
1946 2031 2.948979 ACAAACGAAACAATCAGCCTGA 59.051 40.909 0.00 0.00 0.00 3.86
1957 2042 6.359883 GGAAGATAAGCTGAAACAAACGAAAC 59.640 38.462 0.00 0.00 0.00 2.78
2032 2117 3.144657 ACCTTGTCATCAGTTGCATCA 57.855 42.857 0.00 0.00 0.00 3.07
2223 2308 4.121317 CGTAGGGAAATATACCGCAACAA 58.879 43.478 0.00 0.00 0.00 2.83
2296 2381 6.071984 ACTAGTGAAATGATATCTCCCTCGT 58.928 40.000 3.98 0.00 0.00 4.18
2310 2395 9.561069 ACAACTAATCAACAAGACTAGTGAAAT 57.439 29.630 0.00 0.00 38.27 2.17
2442 2527 8.303156 CCACATTGTACCTGAAAATAACATTGA 58.697 33.333 0.00 0.00 0.00 2.57
2485 2570 9.265901 CTTGAGTGAAATATACCTGGAGTAATG 57.734 37.037 0.00 0.00 33.70 1.90
2539 2624 8.400947 CAAATAGTGCTAGTGCTTCAACAATAT 58.599 33.333 0.00 0.00 40.48 1.28
2743 2828 6.764560 AGAAATGTCAACAACCTAACTACGTT 59.235 34.615 0.00 0.00 0.00 3.99
2848 2934 6.461231 CGGAGGGAGTAGTAGTTTTAATCCTG 60.461 46.154 0.00 0.00 35.98 3.86
3213 3302 4.731773 GCACCAGTTCTCTGAACAAACAAG 60.732 45.833 12.16 0.20 43.76 3.16
3245 3334 7.874528 AGAAACAAAAAGGCAAAGAATATCAGG 59.125 33.333 0.00 0.00 0.00 3.86
3818 4078 1.265095 GCATAGGCAACCATGTCATCG 59.735 52.381 0.00 0.00 40.72 3.84
3973 4233 2.570415 TGGTTATTGAGCACGGGAAA 57.430 45.000 0.00 0.00 0.00 3.13
3974 4234 2.570415 TTGGTTATTGAGCACGGGAA 57.430 45.000 0.00 0.00 35.04 3.97
4384 4645 2.937469 TCACAAAAGGTTGCACACTG 57.063 45.000 0.00 0.00 38.39 3.66
4396 4657 6.764085 CCCTCGTATACATGGTTATCACAAAA 59.236 38.462 3.32 0.00 0.00 2.44
4441 4702 7.505923 AGGTATGCTGTCACTGATACAGTATAA 59.494 37.037 18.28 0.00 46.83 0.98
4442 4703 7.004691 AGGTATGCTGTCACTGATACAGTATA 58.995 38.462 15.14 15.14 44.96 1.47
4444 4705 5.201243 AGGTATGCTGTCACTGATACAGTA 58.799 41.667 4.08 10.20 43.43 2.74
4445 4706 4.026744 AGGTATGCTGTCACTGATACAGT 58.973 43.478 13.02 0.00 46.51 3.55
4446 4707 4.662468 AGGTATGCTGTCACTGATACAG 57.338 45.455 8.95 8.95 45.80 2.74
4447 4708 5.420725 AAAGGTATGCTGTCACTGATACA 57.579 39.130 0.00 0.00 0.00 2.29
4448 4709 6.595716 AGAAAAAGGTATGCTGTCACTGATAC 59.404 38.462 0.00 0.00 0.00 2.24
4449 4710 6.595326 CAGAAAAAGGTATGCTGTCACTGATA 59.405 38.462 0.00 0.00 0.00 2.15
4450 4711 5.413833 CAGAAAAAGGTATGCTGTCACTGAT 59.586 40.000 0.00 0.00 0.00 2.90
4451 4712 4.756642 CAGAAAAAGGTATGCTGTCACTGA 59.243 41.667 0.00 0.00 0.00 3.41
4452 4713 4.083110 CCAGAAAAAGGTATGCTGTCACTG 60.083 45.833 0.00 0.00 0.00 3.66
4453 4714 4.074970 CCAGAAAAAGGTATGCTGTCACT 58.925 43.478 0.00 0.00 0.00 3.41
4454 4715 3.821033 ACCAGAAAAAGGTATGCTGTCAC 59.179 43.478 0.00 0.00 37.67 3.67
4455 4716 3.820467 CACCAGAAAAAGGTATGCTGTCA 59.180 43.478 0.00 0.00 37.23 3.58
4456 4717 3.821033 ACACCAGAAAAAGGTATGCTGTC 59.179 43.478 0.00 0.00 37.23 3.51
4457 4718 3.569701 CACACCAGAAAAAGGTATGCTGT 59.430 43.478 0.00 0.00 37.23 4.40
4458 4719 3.820467 TCACACCAGAAAAAGGTATGCTG 59.180 43.478 0.00 0.00 37.23 4.41
4459 4720 3.821033 GTCACACCAGAAAAAGGTATGCT 59.179 43.478 0.00 0.00 37.23 3.79
4460 4721 3.057526 GGTCACACCAGAAAAAGGTATGC 60.058 47.826 0.00 0.00 38.42 3.14
4714 4995 6.374417 AAATACAGTAGAGGGAAAGCTGAA 57.626 37.500 0.00 0.00 0.00 3.02
4953 5234 4.232221 GTTCACAATGAAAGCATGACAGG 58.768 43.478 0.00 0.00 38.22 4.00
4969 5250 4.270084 CAGTAAAAGCTCGTTCTGTTCACA 59.730 41.667 0.00 0.00 0.00 3.58
4970 5251 4.762809 CAGTAAAAGCTCGTTCTGTTCAC 58.237 43.478 0.00 0.00 0.00 3.18
5126 5407 7.741027 ACTATGCATCTCCATTCAAATGTAG 57.259 36.000 0.19 0.00 34.60 2.74
5299 5589 7.148641 ACGAATATAGCATCGACTGAGAAAAT 58.851 34.615 11.05 0.00 41.43 1.82
5373 5665 3.393426 TTATGGGACGAAGGGAGTAGT 57.607 47.619 0.00 0.00 0.00 2.73
5374 5666 7.614583 TCTTATATTATGGGACGAAGGGAGTAG 59.385 40.741 0.00 0.00 0.00 2.57
5375 5667 7.472741 TCTTATATTATGGGACGAAGGGAGTA 58.527 38.462 0.00 0.00 0.00 2.59
5376 5668 6.320518 TCTTATATTATGGGACGAAGGGAGT 58.679 40.000 0.00 0.00 0.00 3.85
5377 5669 6.852420 TCTTATATTATGGGACGAAGGGAG 57.148 41.667 0.00 0.00 0.00 4.30
5378 5670 6.294899 CGTTCTTATATTATGGGACGAAGGGA 60.295 42.308 0.00 0.00 0.00 4.20
5379 5671 5.867716 CGTTCTTATATTATGGGACGAAGGG 59.132 44.000 0.00 0.00 0.00 3.95
5380 5672 6.453092 ACGTTCTTATATTATGGGACGAAGG 58.547 40.000 14.76 0.00 0.00 3.46
5381 5673 7.941795 AACGTTCTTATATTATGGGACGAAG 57.058 36.000 14.76 0.00 0.00 3.79
5382 5674 8.721019 AAAACGTTCTTATATTATGGGACGAA 57.279 30.769 0.00 0.00 0.00 3.85
5383 5675 8.721019 AAAAACGTTCTTATATTATGGGACGA 57.279 30.769 0.00 0.00 0.00 4.20
5395 5687 9.925268 CTACACAAGTGTTAAAAACGTTCTTAT 57.075 29.630 11.50 0.00 41.83 1.73
5396 5688 8.934825 ACTACACAAGTGTTAAAAACGTTCTTA 58.065 29.630 11.50 0.00 41.83 2.10
5397 5689 7.809665 ACTACACAAGTGTTAAAAACGTTCTT 58.190 30.769 11.50 0.00 41.83 2.52
5398 5690 7.368480 ACTACACAAGTGTTAAAAACGTTCT 57.632 32.000 11.50 0.00 41.83 3.01
5412 5704 5.410439 AGAACGTTTTTGACACTACACAAGT 59.590 36.000 0.46 0.00 39.81 3.16
5413 5705 5.864986 AGAACGTTTTTGACACTACACAAG 58.135 37.500 0.46 0.00 0.00 3.16
5414 5706 5.866335 AGAACGTTTTTGACACTACACAA 57.134 34.783 0.46 0.00 0.00 3.33
5415 5707 5.866335 AAGAACGTTTTTGACACTACACA 57.134 34.783 0.46 0.00 0.00 3.72
5420 5712 8.073768 CCACAATATAAGAACGTTTTTGACACT 58.926 33.333 13.87 0.00 0.00 3.55
5421 5713 7.325097 CCCACAATATAAGAACGTTTTTGACAC 59.675 37.037 13.87 0.00 0.00 3.67
5422 5714 7.228906 TCCCACAATATAAGAACGTTTTTGACA 59.771 33.333 13.87 0.01 0.00 3.58
5423 5715 7.536281 GTCCCACAATATAAGAACGTTTTTGAC 59.464 37.037 13.87 5.89 0.00 3.18
5424 5716 7.571613 CGTCCCACAATATAAGAACGTTTTTGA 60.572 37.037 13.87 2.81 0.00 2.69
5425 5717 6.521821 CGTCCCACAATATAAGAACGTTTTTG 59.478 38.462 13.87 8.38 0.00 2.44
5426 5718 6.348704 CCGTCCCACAATATAAGAACGTTTTT 60.349 38.462 9.22 9.22 0.00 1.94
5427 5719 5.122711 CCGTCCCACAATATAAGAACGTTTT 59.877 40.000 0.46 0.00 0.00 2.43
5428 5720 4.632688 CCGTCCCACAATATAAGAACGTTT 59.367 41.667 0.46 0.00 0.00 3.60
5429 5721 4.081531 TCCGTCCCACAATATAAGAACGTT 60.082 41.667 0.00 0.00 0.00 3.99
5430 5722 3.448301 TCCGTCCCACAATATAAGAACGT 59.552 43.478 0.00 0.00 0.00 3.99
5431 5723 4.049186 CTCCGTCCCACAATATAAGAACG 58.951 47.826 0.00 0.00 0.00 3.95
5432 5724 4.377897 CCTCCGTCCCACAATATAAGAAC 58.622 47.826 0.00 0.00 0.00 3.01
5433 5725 3.389983 CCCTCCGTCCCACAATATAAGAA 59.610 47.826 0.00 0.00 0.00 2.52
5434 5726 2.969950 CCCTCCGTCCCACAATATAAGA 59.030 50.000 0.00 0.00 0.00 2.10
5435 5727 2.969950 TCCCTCCGTCCCACAATATAAG 59.030 50.000 0.00 0.00 0.00 1.73
5436 5728 2.969950 CTCCCTCCGTCCCACAATATAA 59.030 50.000 0.00 0.00 0.00 0.98
5437 5729 2.090943 ACTCCCTCCGTCCCACAATATA 60.091 50.000 0.00 0.00 0.00 0.86
5438 5730 1.344087 ACTCCCTCCGTCCCACAATAT 60.344 52.381 0.00 0.00 0.00 1.28
5439 5731 0.042131 ACTCCCTCCGTCCCACAATA 59.958 55.000 0.00 0.00 0.00 1.90
5440 5732 0.042131 TACTCCCTCCGTCCCACAAT 59.958 55.000 0.00 0.00 0.00 2.71
5441 5733 0.042131 ATACTCCCTCCGTCCCACAA 59.958 55.000 0.00 0.00 0.00 3.33
5442 5734 0.396695 GATACTCCCTCCGTCCCACA 60.397 60.000 0.00 0.00 0.00 4.17
5443 5735 0.106116 AGATACTCCCTCCGTCCCAC 60.106 60.000 0.00 0.00 0.00 4.61
5444 5736 0.185416 GAGATACTCCCTCCGTCCCA 59.815 60.000 0.00 0.00 0.00 4.37
5445 5737 0.185416 TGAGATACTCCCTCCGTCCC 59.815 60.000 0.00 0.00 0.00 4.46
5446 5738 1.133730 AGTGAGATACTCCCTCCGTCC 60.134 57.143 0.00 0.00 33.17 4.79
5447 5739 2.351706 AGTGAGATACTCCCTCCGTC 57.648 55.000 0.00 0.00 33.17 4.79
5448 5740 2.025226 TCAAGTGAGATACTCCCTCCGT 60.025 50.000 0.00 0.00 39.18 4.69
5449 5741 2.359531 GTCAAGTGAGATACTCCCTCCG 59.640 54.545 0.00 0.00 39.18 4.63
5450 5742 3.383185 CAGTCAAGTGAGATACTCCCTCC 59.617 52.174 0.00 0.00 39.18 4.30
5451 5743 4.274147 TCAGTCAAGTGAGATACTCCCTC 58.726 47.826 0.00 0.00 39.18 4.30
5452 5744 4.017958 TCTCAGTCAAGTGAGATACTCCCT 60.018 45.833 12.48 0.00 46.52 4.20
5453 5745 4.274147 TCTCAGTCAAGTGAGATACTCCC 58.726 47.826 12.48 0.00 46.52 4.30
5461 5753 7.496529 TTTAACCAAATCTCAGTCAAGTGAG 57.503 36.000 8.30 8.30 44.71 3.51
5494 5787 5.819379 TCAATTTGAGTGTGGCTAGATCATC 59.181 40.000 0.00 0.00 0.00 2.92
5547 5840 8.180267 GCGATGCTGCTAATCTATGAAATTATT 58.820 33.333 0.00 0.00 0.00 1.40
5550 5843 5.471116 TGCGATGCTGCTAATCTATGAAATT 59.529 36.000 0.00 0.00 35.36 1.82
5573 5866 5.643348 TCTGCAATGTAAGGTTCTACATGTG 59.357 40.000 9.11 0.00 40.79 3.21
5600 5893 4.427312 CAGCAGCAGTTGAACTTTCTTTT 58.573 39.130 0.00 0.00 0.00 2.27
5637 5930 1.202952 TGTTTAGGTTCGGGCAATGGT 60.203 47.619 0.00 0.00 0.00 3.55
5686 5979 6.372659 ACACACCAAGTTAGATTAGCAATCAG 59.627 38.462 10.26 0.00 40.42 2.90
5688 5981 6.371548 TCACACACCAAGTTAGATTAGCAATC 59.628 38.462 0.00 0.00 38.20 2.67
5701 5994 1.416401 ACTTCCGATCACACACCAAGT 59.584 47.619 0.00 0.00 0.00 3.16
5706 5999 2.412089 GCTACAACTTCCGATCACACAC 59.588 50.000 0.00 0.00 0.00 3.82
5713 6007 4.649674 TCAATAGGAGCTACAACTTCCGAT 59.350 41.667 0.00 0.00 0.00 4.18
5769 6063 3.018856 AGCTTGCATGCATAACAGCTTA 58.981 40.909 30.06 10.23 34.04 3.09
5779 6073 3.687102 GGCCACAGCTTGCATGCA 61.687 61.111 24.65 18.46 39.73 3.96
5800 6094 0.036732 TGCTCCAGGTCATTGGACAC 59.963 55.000 0.00 0.00 46.17 3.67
5807 6101 1.064166 CCCATTCTTGCTCCAGGTCAT 60.064 52.381 0.00 0.00 0.00 3.06
5861 6155 3.866582 CATCTGGGCCGTCTCCCC 61.867 72.222 0.00 0.00 45.97 4.81
5862 6156 4.554036 GCATCTGGGCCGTCTCCC 62.554 72.222 0.00 0.00 46.73 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.