Multiple sequence alignment - TraesCS3D01G237100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G237100 chr3D 100.000 8190 0 0 1 8190 328377025 328385214 0.000000e+00 15125.0
1 TraesCS3D01G237100 chr3D 94.262 122 5 1 1 120 41272451 41272572 1.400000e-42 185.0
2 TraesCS3D01G237100 chr3D 90.580 138 8 4 1 133 559109365 559109502 2.350000e-40 178.0
3 TraesCS3D01G237100 chr3D 100.000 30 0 0 2320 2349 168190130 168190101 1.000000e-03 56.5
4 TraesCS3D01G237100 chr3D 96.970 33 0 1 2317 2348 301440401 301440369 4.000000e-03 54.7
5 TraesCS3D01G237100 chr3B 97.569 2592 59 4 5601 8190 421670439 421667850 0.000000e+00 4434.0
6 TraesCS3D01G237100 chr3B 94.021 2793 110 24 1391 4155 421674660 421671897 0.000000e+00 4180.0
7 TraesCS3D01G237100 chr3B 93.114 1278 56 18 4313 5566 421671852 421670583 0.000000e+00 1844.0
8 TraesCS3D01G237100 chr3B 87.689 861 37 25 551 1360 421675960 421675118 0.000000e+00 939.0
9 TraesCS3D01G237100 chr3B 89.744 234 21 2 154 386 421676445 421676214 6.220000e-76 296.0
10 TraesCS3D01G237100 chr3B 95.161 124 4 1 2 123 827065184 827065307 2.330000e-45 195.0
11 TraesCS3D01G237100 chr3B 95.161 124 4 1 2 123 827611322 827611445 2.330000e-45 195.0
12 TraesCS3D01G237100 chr3B 85.897 156 14 7 398 552 421676232 421676084 8.510000e-35 159.0
13 TraesCS3D01G237100 chr3B 83.432 169 24 3 480 646 525355110 525354944 3.960000e-33 154.0
14 TraesCS3D01G237100 chr3B 97.917 48 0 1 4184 4231 421671897 421671851 1.890000e-11 82.4
15 TraesCS3D01G237100 chr3B 100.000 30 0 0 2319 2348 420417245 420417274 1.000000e-03 56.5
16 TraesCS3D01G237100 chr3A 97.111 2596 64 6 5602 8190 442761169 442763760 0.000000e+00 4368.0
17 TraesCS3D01G237100 chr3A 91.787 1802 69 39 2473 4231 442757948 442759713 0.000000e+00 2435.0
18 TraesCS3D01G237100 chr3A 92.806 1265 60 10 4313 5572 442759712 442760950 0.000000e+00 1803.0
19 TraesCS3D01G237100 chr3A 84.778 1419 138 48 120 1484 442755931 442757325 0.000000e+00 1352.0
20 TraesCS3D01G237100 chr3A 90.341 528 32 10 1713 2231 442757434 442757951 0.000000e+00 675.0
21 TraesCS3D01G237100 chr3A 89.286 196 11 2 120 305 442755558 442755753 3.820000e-58 237.0
22 TraesCS3D01G237100 chr3A 90.000 50 3 1 336 385 442756196 442756243 6.860000e-06 63.9
23 TraesCS3D01G237100 chr3A 96.970 33 0 1 2317 2348 434000889 434000921 4.000000e-03 54.7
24 TraesCS3D01G237100 chrUn 88.857 1041 70 17 3211 4231 82393518 82394532 0.000000e+00 1238.0
25 TraesCS3D01G237100 chrUn 87.826 345 28 7 4313 4656 82394531 82394862 7.710000e-105 392.0
26 TraesCS3D01G237100 chr5B 85.909 1029 80 30 3218 4231 289568616 289569594 0.000000e+00 1037.0
27 TraesCS3D01G237100 chr5B 86.404 684 57 19 3218 3897 118650594 118649943 0.000000e+00 715.0
28 TraesCS3D01G237100 chr5B 88.087 277 22 7 3965 4231 118649941 118649666 1.330000e-82 318.0
29 TraesCS3D01G237100 chr5B 91.045 134 9 2 1 132 642304962 642305094 2.350000e-40 178.0
30 TraesCS3D01G237100 chr5B 90.476 105 7 2 4313 4417 118649667 118649566 1.430000e-27 135.0
31 TraesCS3D01G237100 chr5B 90.476 105 7 2 4313 4417 289569593 289569694 1.430000e-27 135.0
32 TraesCS3D01G237100 chr7D 94.355 124 7 0 1 124 516058730 516058853 3.020000e-44 191.0
33 TraesCS3D01G237100 chr1D 94.309 123 5 1 1 121 436145070 436145192 3.900000e-43 187.0
34 TraesCS3D01G237100 chr1D 81.773 203 31 4 450 648 18224447 18224647 1.830000e-36 165.0
35 TraesCS3D01G237100 chr2D 94.915 118 6 0 1 118 180089991 180090108 1.400000e-42 185.0
36 TraesCS3D01G237100 chr1A 94.309 123 4 2 1 120 405484460 405484582 1.400000e-42 185.0
37 TraesCS3D01G237100 chr1B 92.683 123 9 0 1000 1122 674628093 674628215 2.350000e-40 178.0
38 TraesCS3D01G237100 chr7A 96.471 85 3 0 4230 4314 270699162 270699078 3.080000e-29 141.0
39 TraesCS3D01G237100 chr7A 94.505 91 5 0 4229 4319 386394965 386395055 3.080000e-29 141.0
40 TraesCS3D01G237100 chr5D 96.471 85 3 0 4230 4314 476728962 476728878 3.080000e-29 141.0
41 TraesCS3D01G237100 chr5D 91.837 98 7 1 4230 4326 528967412 528967509 1.430000e-27 135.0
42 TraesCS3D01G237100 chr6B 93.548 93 6 0 4225 4317 390628724 390628816 1.110000e-28 139.0
43 TraesCS3D01G237100 chr6B 100.000 31 0 0 2318 2348 508613052 508613022 3.190000e-04 58.4
44 TraesCS3D01G237100 chr6B 96.970 33 0 1 2315 2346 30313821 30313853 4.000000e-03 54.7
45 TraesCS3D01G237100 chr4B 95.402 87 4 0 4229 4315 502968148 502968062 1.110000e-28 139.0
46 TraesCS3D01G237100 chr4B 91.000 100 6 3 4230 4326 662002383 662002284 1.850000e-26 132.0
47 TraesCS3D01G237100 chr4B 96.875 32 1 0 2317 2348 661617562 661617531 4.000000e-03 54.7
48 TraesCS3D01G237100 chr2A 94.505 91 4 1 4224 4314 681252177 681252266 1.110000e-28 139.0
49 TraesCS3D01G237100 chr6D 92.632 95 5 2 4230 4322 144745112 144745018 1.430000e-27 135.0
50 TraesCS3D01G237100 chr6D 100.000 31 0 0 2318 2348 65625789 65625819 3.190000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G237100 chr3D 328377025 328385214 8189 False 15125.000000 15125 100.000000 1 8190 1 chr3D.!!$F2 8189
1 TraesCS3D01G237100 chr3B 421667850 421676445 8595 True 1704.914286 4434 92.278714 154 8190 7 chr3B.!!$R2 8036
2 TraesCS3D01G237100 chr3A 442755558 442763760 8202 False 1561.985714 4368 90.872714 120 8190 7 chr3A.!!$F2 8070
3 TraesCS3D01G237100 chrUn 82393518 82394862 1344 False 815.000000 1238 88.341500 3211 4656 2 chrUn.!!$F1 1445
4 TraesCS3D01G237100 chr5B 289568616 289569694 1078 False 586.000000 1037 88.192500 3218 4417 2 chr5B.!!$F2 1199
5 TraesCS3D01G237100 chr5B 118649566 118650594 1028 True 389.333333 715 88.322333 3218 4417 3 chr5B.!!$R1 1199

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
78 79 0.178301 TGGTGTTCGTTGTACTGCCA 59.822 50.0 0.00 0.00 0.00 4.92 F
991 1578 0.186873 GTATACACGGGAGGGAGGGA 59.813 60.0 0.00 0.00 36.77 4.20 F
1822 2880 0.168128 CCTTCCAACGCACGAAATCC 59.832 55.0 0.00 0.00 0.00 3.01 F
2274 3575 0.036388 CCGCCTCTCCTAGTGCAAAA 60.036 55.0 0.00 0.00 0.00 2.44 F
3028 4337 0.178964 TTTGCAAAGTAGGCCAGGCT 60.179 50.0 12.43 5.23 0.00 4.58 F
4404 5783 0.108585 TCTCAGCTGGTTGTGGGTTC 59.891 55.0 15.13 0.00 0.00 3.62 F
4563 5942 0.109781 CGCCCGGATGTGTTTGAAAG 60.110 55.0 0.73 0.00 0.00 2.62 F
5832 7501 0.183492 TCTGGAGGTGCTTGCTTTGT 59.817 50.0 0.00 0.00 0.00 2.83 F
5968 7638 0.325296 TTCTACCTCAGGGTGCGGAT 60.325 55.0 0.00 0.00 46.75 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1622 2676 1.406341 CCGCCGATTAGAGGACCAAAA 60.406 52.381 0.00 0.00 0.00 2.44 R
2255 3556 0.036388 TTTTGCACTAGGAGAGGCGG 60.036 55.000 0.00 0.00 0.00 6.13 R
3009 4318 0.178964 AGCCTGGCCTACTTTGCAAA 60.179 50.000 16.57 12.14 0.00 3.68 R
3625 4951 0.894141 AAGTATGCGGGCATTGCAAA 59.106 45.000 11.88 0.00 46.87 3.68 R
4486 5865 1.080638 TGAGGGGCCAAGGTTTACAT 58.919 50.000 4.39 0.00 0.00 2.29 R
5968 7638 0.179020 CTCCAGGAACAAGCACACCA 60.179 55.000 0.00 0.00 0.00 4.17 R
6383 8054 2.625314 CGATCTAGGAAGATGACCAGCA 59.375 50.000 0.00 0.00 42.73 4.41 R
7126 8797 0.475906 AGCTGGTGAGTGCCTTCTTT 59.524 50.000 0.00 0.00 0.00 2.52 R
7772 9450 3.947834 CGGCTTGTAGGAATTTTGGAGAT 59.052 43.478 0.00 0.00 0.00 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.226746 GCTTTGGTGCTTGTAGTCGT 58.773 50.000 0.00 0.00 0.00 4.34
20 21 1.602377 GCTTTGGTGCTTGTAGTCGTT 59.398 47.619 0.00 0.00 0.00 3.85
21 22 2.602217 GCTTTGGTGCTTGTAGTCGTTG 60.602 50.000 0.00 0.00 0.00 4.10
22 23 0.941542 TTGGTGCTTGTAGTCGTTGC 59.058 50.000 0.00 0.00 0.00 4.17
23 24 0.882927 TGGTGCTTGTAGTCGTTGCC 60.883 55.000 0.00 0.00 0.00 4.52
24 25 0.882927 GGTGCTTGTAGTCGTTGCCA 60.883 55.000 0.00 0.00 0.00 4.92
25 26 0.512952 GTGCTTGTAGTCGTTGCCAG 59.487 55.000 0.00 0.00 0.00 4.85
26 27 0.602638 TGCTTGTAGTCGTTGCCAGG 60.603 55.000 0.00 0.00 0.00 4.45
27 28 0.602905 GCTTGTAGTCGTTGCCAGGT 60.603 55.000 0.00 0.00 0.00 4.00
28 29 1.148310 CTTGTAGTCGTTGCCAGGTG 58.852 55.000 0.00 0.00 0.00 4.00
29 30 0.250124 TTGTAGTCGTTGCCAGGTGG 60.250 55.000 0.00 0.00 38.53 4.61
30 31 1.370064 GTAGTCGTTGCCAGGTGGT 59.630 57.895 0.00 0.00 37.57 4.16
31 32 0.669625 GTAGTCGTTGCCAGGTGGTC 60.670 60.000 0.00 0.00 37.57 4.02
32 33 0.830444 TAGTCGTTGCCAGGTGGTCT 60.830 55.000 0.00 0.00 37.57 3.85
33 34 1.961277 GTCGTTGCCAGGTGGTCTG 60.961 63.158 0.00 0.00 43.00 3.51
34 35 3.357079 CGTTGCCAGGTGGTCTGC 61.357 66.667 0.00 0.00 42.05 4.26
35 36 3.357079 GTTGCCAGGTGGTCTGCG 61.357 66.667 0.00 0.00 42.05 5.18
36 37 4.641645 TTGCCAGGTGGTCTGCGG 62.642 66.667 0.00 0.00 42.05 5.69
38 39 4.101448 GCCAGGTGGTCTGCGGAT 62.101 66.667 0.00 0.00 42.05 4.18
39 40 2.187946 CCAGGTGGTCTGCGGATC 59.812 66.667 0.00 0.00 42.05 3.36
40 41 2.362369 CCAGGTGGTCTGCGGATCT 61.362 63.158 7.45 0.00 42.05 2.75
41 42 1.153489 CAGGTGGTCTGCGGATCTG 60.153 63.158 7.45 5.68 36.60 2.90
42 43 2.187946 GGTGGTCTGCGGATCTGG 59.812 66.667 7.45 0.00 0.00 3.86
43 44 2.359169 GGTGGTCTGCGGATCTGGA 61.359 63.158 7.45 0.00 0.00 3.86
44 45 1.690219 GGTGGTCTGCGGATCTGGAT 61.690 60.000 7.45 0.00 0.00 3.41
45 46 0.531532 GTGGTCTGCGGATCTGGATG 60.532 60.000 7.45 0.00 0.00 3.51
46 47 0.977627 TGGTCTGCGGATCTGGATGT 60.978 55.000 7.45 0.00 0.00 3.06
47 48 1.040646 GGTCTGCGGATCTGGATGTA 58.959 55.000 0.00 0.00 0.00 2.29
48 49 1.412710 GGTCTGCGGATCTGGATGTAA 59.587 52.381 0.00 0.00 0.00 2.41
49 50 2.037772 GGTCTGCGGATCTGGATGTAAT 59.962 50.000 0.00 0.00 0.00 1.89
50 51 3.495100 GGTCTGCGGATCTGGATGTAATT 60.495 47.826 0.00 0.00 0.00 1.40
51 52 4.130118 GTCTGCGGATCTGGATGTAATTT 58.870 43.478 0.00 0.00 0.00 1.82
52 53 4.576463 GTCTGCGGATCTGGATGTAATTTT 59.424 41.667 0.00 0.00 0.00 1.82
53 54 5.066505 GTCTGCGGATCTGGATGTAATTTTT 59.933 40.000 0.00 0.00 0.00 1.94
54 55 6.260050 GTCTGCGGATCTGGATGTAATTTTTA 59.740 38.462 0.00 0.00 0.00 1.52
55 56 6.998074 TCTGCGGATCTGGATGTAATTTTTAT 59.002 34.615 3.14 0.00 0.00 1.40
56 57 7.502226 TCTGCGGATCTGGATGTAATTTTTATT 59.498 33.333 3.14 0.00 0.00 1.40
57 58 8.006298 TGCGGATCTGGATGTAATTTTTATTT 57.994 30.769 3.14 0.00 0.00 1.40
58 59 8.134895 TGCGGATCTGGATGTAATTTTTATTTC 58.865 33.333 3.14 0.00 0.00 2.17
59 60 8.352942 GCGGATCTGGATGTAATTTTTATTTCT 58.647 33.333 3.14 0.00 0.00 2.52
60 61 9.669353 CGGATCTGGATGTAATTTTTATTTCTG 57.331 33.333 0.00 0.00 0.00 3.02
61 62 9.971922 GGATCTGGATGTAATTTTTATTTCTGG 57.028 33.333 0.00 0.00 0.00 3.86
64 65 9.308000 TCTGGATGTAATTTTTATTTCTGGTGT 57.692 29.630 0.00 0.00 0.00 4.16
65 66 9.927668 CTGGATGTAATTTTTATTTCTGGTGTT 57.072 29.630 0.00 0.00 0.00 3.32
66 67 9.921637 TGGATGTAATTTTTATTTCTGGTGTTC 57.078 29.630 0.00 0.00 0.00 3.18
67 68 9.072294 GGATGTAATTTTTATTTCTGGTGTTCG 57.928 33.333 0.00 0.00 0.00 3.95
68 69 9.620660 GATGTAATTTTTATTTCTGGTGTTCGT 57.379 29.630 0.00 0.00 0.00 3.85
69 70 9.974980 ATGTAATTTTTATTTCTGGTGTTCGTT 57.025 25.926 0.00 0.00 0.00 3.85
70 71 9.239002 TGTAATTTTTATTTCTGGTGTTCGTTG 57.761 29.630 0.00 0.00 0.00 4.10
71 72 9.240159 GTAATTTTTATTTCTGGTGTTCGTTGT 57.760 29.630 0.00 0.00 0.00 3.32
73 74 8.791355 ATTTTTATTTCTGGTGTTCGTTGTAC 57.209 30.769 0.00 0.00 0.00 2.90
74 75 7.556733 TTTTATTTCTGGTGTTCGTTGTACT 57.443 32.000 0.00 0.00 0.00 2.73
75 76 6.533819 TTATTTCTGGTGTTCGTTGTACTG 57.466 37.500 0.00 0.00 0.00 2.74
76 77 1.860676 TCTGGTGTTCGTTGTACTGC 58.139 50.000 0.00 0.00 0.00 4.40
77 78 0.865769 CTGGTGTTCGTTGTACTGCC 59.134 55.000 0.00 0.00 0.00 4.85
78 79 0.178301 TGGTGTTCGTTGTACTGCCA 59.822 50.000 0.00 0.00 0.00 4.92
79 80 1.202710 TGGTGTTCGTTGTACTGCCAT 60.203 47.619 0.00 0.00 0.00 4.40
80 81 1.196808 GGTGTTCGTTGTACTGCCATG 59.803 52.381 0.00 0.00 0.00 3.66
81 82 2.139917 GTGTTCGTTGTACTGCCATGA 58.860 47.619 0.00 0.00 0.00 3.07
82 83 2.742053 GTGTTCGTTGTACTGCCATGAT 59.258 45.455 0.00 0.00 0.00 2.45
83 84 3.188460 GTGTTCGTTGTACTGCCATGATT 59.812 43.478 0.00 0.00 0.00 2.57
84 85 3.188254 TGTTCGTTGTACTGCCATGATTG 59.812 43.478 0.00 0.00 0.00 2.67
85 86 3.326836 TCGTTGTACTGCCATGATTGA 57.673 42.857 0.00 0.00 0.00 2.57
86 87 3.669536 TCGTTGTACTGCCATGATTGAA 58.330 40.909 0.00 0.00 0.00 2.69
87 88 3.684305 TCGTTGTACTGCCATGATTGAAG 59.316 43.478 0.00 0.00 0.00 3.02
88 89 3.684305 CGTTGTACTGCCATGATTGAAGA 59.316 43.478 0.00 0.00 0.00 2.87
89 90 4.333649 CGTTGTACTGCCATGATTGAAGAT 59.666 41.667 0.00 0.00 0.00 2.40
90 91 5.575957 GTTGTACTGCCATGATTGAAGATG 58.424 41.667 0.00 0.00 0.00 2.90
91 92 5.101648 TGTACTGCCATGATTGAAGATGA 57.898 39.130 0.00 0.00 0.00 2.92
92 93 5.499313 TGTACTGCCATGATTGAAGATGAA 58.501 37.500 0.00 0.00 0.00 2.57
93 94 6.124340 TGTACTGCCATGATTGAAGATGAAT 58.876 36.000 0.00 0.00 0.00 2.57
94 95 7.281841 TGTACTGCCATGATTGAAGATGAATA 58.718 34.615 0.00 0.00 0.00 1.75
95 96 6.879276 ACTGCCATGATTGAAGATGAATAG 57.121 37.500 0.00 0.00 0.00 1.73
96 97 6.598503 ACTGCCATGATTGAAGATGAATAGA 58.401 36.000 0.00 0.00 0.00 1.98
97 98 7.232188 ACTGCCATGATTGAAGATGAATAGAT 58.768 34.615 0.00 0.00 0.00 1.98
98 99 7.724506 ACTGCCATGATTGAAGATGAATAGATT 59.275 33.333 0.00 0.00 0.00 2.40
99 100 7.882179 TGCCATGATTGAAGATGAATAGATTG 58.118 34.615 0.00 0.00 0.00 2.67
100 101 7.039993 TGCCATGATTGAAGATGAATAGATTGG 60.040 37.037 0.00 0.00 0.00 3.16
101 102 7.176165 GCCATGATTGAAGATGAATAGATTGGA 59.824 37.037 0.00 0.00 0.00 3.53
102 103 9.074576 CCATGATTGAAGATGAATAGATTGGAA 57.925 33.333 0.00 0.00 0.00 3.53
104 105 9.863650 ATGATTGAAGATGAATAGATTGGAAGT 57.136 29.630 0.00 0.00 0.00 3.01
105 106 9.690913 TGATTGAAGATGAATAGATTGGAAGTT 57.309 29.630 0.00 0.00 0.00 2.66
149 150 6.921857 ACATGCATTACTATAACTACGACCAC 59.078 38.462 0.00 0.00 0.00 4.16
151 152 6.500910 TGCATTACTATAACTACGACCACTG 58.499 40.000 0.00 0.00 0.00 3.66
159 170 1.203994 ACTACGACCACTGGTGCATAC 59.796 52.381 5.10 0.00 35.25 2.39
164 175 2.735444 CGACCACTGGTGCATACTACAG 60.735 54.545 5.10 0.00 35.25 2.74
229 240 0.511221 CCAACCGTTAGTCGTTGCAG 59.489 55.000 0.00 0.00 37.94 4.41
236 247 0.685097 TTAGTCGTTGCAGCCCTCTT 59.315 50.000 0.00 0.00 0.00 2.85
242 253 1.066908 CGTTGCAGCCCTCTTTTGAAA 59.933 47.619 0.00 0.00 0.00 2.69
340 724 7.540400 TGGACGCATTTTAATATGTTTGTTCAG 59.460 33.333 7.59 0.00 0.00 3.02
455 876 4.202588 ACGGAGGGAGCAGAATACTACTAT 60.203 45.833 0.00 0.00 0.00 2.12
463 884 5.005094 AGCAGAATACTACTATCTCCGTCC 58.995 45.833 0.00 0.00 0.00 4.79
466 887 6.231951 CAGAATACTACTATCTCCGTCCTGA 58.768 44.000 0.00 0.00 0.00 3.86
471 892 9.756571 AATACTACTATCTCCGTCCTGATTTAT 57.243 33.333 0.00 0.00 0.00 1.40
474 895 6.978674 ACTATCTCCGTCCTGATTTATTGA 57.021 37.500 0.00 0.00 0.00 2.57
584 1134 9.581099 AAAACAATATTCAAATACGGATCCAAC 57.419 29.630 13.41 0.00 0.00 3.77
688 1249 2.506444 GGACGGAGATAGTAGTCCTGG 58.494 57.143 6.26 0.00 46.99 4.45
916 1492 4.537433 CACTAGCCCGCCTGCTCC 62.537 72.222 0.00 0.00 41.68 4.70
917 1493 4.787280 ACTAGCCCGCCTGCTCCT 62.787 66.667 0.00 0.00 41.68 3.69
918 1494 3.922640 CTAGCCCGCCTGCTCCTC 61.923 72.222 0.00 0.00 41.68 3.71
991 1578 0.186873 GTATACACGGGAGGGAGGGA 59.813 60.000 0.00 0.00 36.77 4.20
1123 1720 1.202651 CCACCATCAAGATCGGTACCC 60.203 57.143 6.25 0.00 0.00 3.69
1136 1733 1.211949 CGGTACCCACCCATTCTTCAT 59.788 52.381 6.25 0.00 42.43 2.57
1161 1772 1.852626 CCTTCCTTCCCACCACCCT 60.853 63.158 0.00 0.00 0.00 4.34
1196 1808 2.737252 GGTTGTTTCTCTGGAACGCTAG 59.263 50.000 0.00 0.00 0.00 3.42
1245 1857 1.996786 TAACCGCCGCGAACCTAGAG 61.997 60.000 15.93 0.00 0.00 2.43
1265 1877 7.387948 CCTAGAGACCGAAAGAAAAGAAAATGA 59.612 37.037 0.00 0.00 0.00 2.57
1360 1985 1.005512 TTGCTTTCGCCGCTAGACA 60.006 52.632 0.00 0.00 34.43 3.41
1361 1986 1.014044 TTGCTTTCGCCGCTAGACAG 61.014 55.000 0.00 0.00 34.43 3.51
1397 2043 1.330155 ACTGGGGATAAGGAGGAGGA 58.670 55.000 0.00 0.00 0.00 3.71
1491 2543 2.359975 CTTGGTTGCCGTCTCCCC 60.360 66.667 0.00 0.00 0.00 4.81
1500 2552 0.250770 GCCGTCTCCCCAGTCTTTTT 60.251 55.000 0.00 0.00 0.00 1.94
1525 2577 5.623169 ACACCGGAACTATAGAAAAACCAA 58.377 37.500 9.46 0.00 0.00 3.67
1529 2581 4.201783 CGGAACTATAGAAAAACCAAGCGG 60.202 45.833 6.78 0.00 38.77 5.52
1571 2623 5.465935 TGTTTGCTTTCGACTTTTCAGTTT 58.534 33.333 0.00 0.00 31.22 2.66
1616 2670 1.538634 GCTCTGAGCTGAGATTCGCAT 60.539 52.381 21.93 0.00 38.45 4.73
1622 2676 3.503363 TGAGCTGAGATTCGCATTGTTTT 59.497 39.130 0.00 0.00 0.00 2.43
1641 2695 2.018542 TTTTGGTCCTCTAATCGGCG 57.981 50.000 0.00 0.00 0.00 6.46
1663 2720 4.552767 CGGCTTAATCTTTGCATTACTCCG 60.553 45.833 0.00 0.00 32.03 4.63
1706 2763 2.113860 TTCCTGGCAATCTTCTTCCG 57.886 50.000 0.00 0.00 0.00 4.30
1707 2764 0.253044 TCCTGGCAATCTTCTTCCGG 59.747 55.000 0.00 0.00 0.00 5.14
1708 2765 1.379642 CCTGGCAATCTTCTTCCGGC 61.380 60.000 0.00 0.00 0.00 6.13
1709 2766 1.378514 TGGCAATCTTCTTCCGGCC 60.379 57.895 0.00 0.00 41.70 6.13
1822 2880 0.168128 CCTTCCAACGCACGAAATCC 59.832 55.000 0.00 0.00 0.00 3.01
1842 2900 5.153950 TCCTCTCTTCTTAAAGCCAACTC 57.846 43.478 0.00 0.00 32.18 3.01
2195 3260 1.066858 ACAATGTCTCCGTTCGAGCAT 60.067 47.619 0.00 0.00 38.62 3.79
2231 3532 1.377725 GGACGACGGTGGAGAGGTA 60.378 63.158 0.00 0.00 0.00 3.08
2232 3533 0.962356 GGACGACGGTGGAGAGGTAA 60.962 60.000 0.00 0.00 0.00 2.85
2233 3534 0.169894 GACGACGGTGGAGAGGTAAC 59.830 60.000 0.00 0.00 0.00 2.50
2247 3548 0.727398 GGTAACTGCTCCAACATCGC 59.273 55.000 0.00 0.00 0.00 4.58
2248 3549 0.727398 GTAACTGCTCCAACATCGCC 59.273 55.000 0.00 0.00 0.00 5.54
2249 3550 0.739462 TAACTGCTCCAACATCGCCG 60.739 55.000 0.00 0.00 0.00 6.46
2250 3551 2.434884 CTGCTCCAACATCGCCGT 60.435 61.111 0.00 0.00 0.00 5.68
2251 3552 2.031919 TGCTCCAACATCGCCGTT 59.968 55.556 0.00 0.00 0.00 4.44
2252 3553 1.577328 CTGCTCCAACATCGCCGTTT 61.577 55.000 0.00 0.00 0.00 3.60
2253 3554 1.154225 GCTCCAACATCGCCGTTTG 60.154 57.895 0.00 0.00 0.00 2.93
2254 3555 1.852067 GCTCCAACATCGCCGTTTGT 61.852 55.000 0.00 0.00 0.00 2.83
2255 3556 0.165944 CTCCAACATCGCCGTTTGTC 59.834 55.000 0.00 0.00 0.00 3.18
2256 3557 1.209127 CCAACATCGCCGTTTGTCC 59.791 57.895 0.00 0.00 0.00 4.02
2257 3558 1.154488 CAACATCGCCGTTTGTCCG 60.154 57.895 0.00 0.00 0.00 4.79
2258 3559 2.961669 AACATCGCCGTTTGTCCGC 61.962 57.895 0.00 0.00 0.00 5.54
2259 3560 4.160635 CATCGCCGTTTGTCCGCC 62.161 66.667 0.00 0.00 0.00 6.13
2260 3561 4.388499 ATCGCCGTTTGTCCGCCT 62.388 61.111 0.00 0.00 0.00 5.52
2263 3564 3.119096 GCCGTTTGTCCGCCTCTC 61.119 66.667 0.00 0.00 0.00 3.20
2264 3565 2.434359 CCGTTTGTCCGCCTCTCC 60.434 66.667 0.00 0.00 0.00 3.71
2265 3566 2.657237 CGTTTGTCCGCCTCTCCT 59.343 61.111 0.00 0.00 0.00 3.69
2266 3567 1.601419 CCGTTTGTCCGCCTCTCCTA 61.601 60.000 0.00 0.00 0.00 2.94
2267 3568 0.179134 CGTTTGTCCGCCTCTCCTAG 60.179 60.000 0.00 0.00 0.00 3.02
2268 3569 0.896226 GTTTGTCCGCCTCTCCTAGT 59.104 55.000 0.00 0.00 0.00 2.57
2269 3570 0.895530 TTTGTCCGCCTCTCCTAGTG 59.104 55.000 0.00 0.00 0.00 2.74
2270 3571 1.605058 TTGTCCGCCTCTCCTAGTGC 61.605 60.000 0.00 0.00 0.00 4.40
2271 3572 2.052690 GTCCGCCTCTCCTAGTGCA 61.053 63.158 0.00 0.00 0.00 4.57
2272 3573 1.304962 TCCGCCTCTCCTAGTGCAA 60.305 57.895 0.00 0.00 0.00 4.08
2273 3574 0.902984 TCCGCCTCTCCTAGTGCAAA 60.903 55.000 0.00 0.00 0.00 3.68
2274 3575 0.036388 CCGCCTCTCCTAGTGCAAAA 60.036 55.000 0.00 0.00 0.00 2.44
2275 3576 1.079503 CGCCTCTCCTAGTGCAAAAC 58.920 55.000 0.00 0.00 0.00 2.43
2276 3577 1.338200 CGCCTCTCCTAGTGCAAAACT 60.338 52.381 0.00 0.00 43.40 2.66
2277 3578 2.079925 GCCTCTCCTAGTGCAAAACTG 58.920 52.381 0.00 0.00 40.26 3.16
2278 3579 2.079925 CCTCTCCTAGTGCAAAACTGC 58.920 52.381 0.00 0.00 40.26 4.40
2279 3580 2.550855 CCTCTCCTAGTGCAAAACTGCA 60.551 50.000 0.00 0.00 40.26 4.41
2296 3597 5.025986 ACTGCATACGGTTTCTTTTTACG 57.974 39.130 0.00 0.00 27.90 3.18
2297 3598 4.751098 ACTGCATACGGTTTCTTTTTACGA 59.249 37.500 0.00 0.00 27.90 3.43
2298 3599 5.107220 ACTGCATACGGTTTCTTTTTACGAG 60.107 40.000 0.00 0.00 27.90 4.18
2299 3600 4.989797 TGCATACGGTTTCTTTTTACGAGA 59.010 37.500 0.00 0.00 0.00 4.04
2300 3601 5.640357 TGCATACGGTTTCTTTTTACGAGAT 59.360 36.000 0.00 0.00 0.00 2.75
2301 3602 6.812656 TGCATACGGTTTCTTTTTACGAGATA 59.187 34.615 0.00 0.00 0.00 1.98
2302 3603 7.493320 TGCATACGGTTTCTTTTTACGAGATAT 59.507 33.333 0.00 0.00 0.00 1.63
2303 3604 7.792508 GCATACGGTTTCTTTTTACGAGATATG 59.207 37.037 0.00 0.00 0.00 1.78
2304 3605 6.103222 ACGGTTTCTTTTTACGAGATATGC 57.897 37.500 0.00 0.00 0.00 3.14
2305 3606 5.873164 ACGGTTTCTTTTTACGAGATATGCT 59.127 36.000 0.00 0.00 0.00 3.79
2306 3607 6.035758 ACGGTTTCTTTTTACGAGATATGCTC 59.964 38.462 0.00 0.00 40.38 4.26
2307 3608 6.509677 CGGTTTCTTTTTACGAGATATGCTCC 60.510 42.308 0.00 0.00 40.70 4.70
2308 3609 6.539103 GGTTTCTTTTTACGAGATATGCTCCT 59.461 38.462 0.00 0.00 40.70 3.69
2309 3610 7.709613 GGTTTCTTTTTACGAGATATGCTCCTA 59.290 37.037 0.00 0.00 40.70 2.94
2310 3611 8.541312 GTTTCTTTTTACGAGATATGCTCCTAC 58.459 37.037 0.00 0.00 40.70 3.18
2311 3612 7.584122 TCTTTTTACGAGATATGCTCCTACT 57.416 36.000 0.00 0.00 40.70 2.57
2312 3613 8.687292 TCTTTTTACGAGATATGCTCCTACTA 57.313 34.615 0.00 0.00 40.70 1.82
2313 3614 8.784994 TCTTTTTACGAGATATGCTCCTACTAG 58.215 37.037 0.00 0.00 40.70 2.57
2314 3615 8.461249 TTTTTACGAGATATGCTCCTACTAGT 57.539 34.615 0.00 0.00 40.70 2.57
2315 3616 8.461249 TTTTACGAGATATGCTCCTACTAGTT 57.539 34.615 0.00 0.00 40.70 2.24
2316 3617 8.461249 TTTACGAGATATGCTCCTACTAGTTT 57.539 34.615 0.00 0.00 40.70 2.66
2317 3618 9.565090 TTTACGAGATATGCTCCTACTAGTTTA 57.435 33.333 0.00 0.00 40.70 2.01
2318 3619 9.736414 TTACGAGATATGCTCCTACTAGTTTAT 57.264 33.333 0.00 0.00 40.70 1.40
2319 3620 8.046294 ACGAGATATGCTCCTACTAGTTTATG 57.954 38.462 0.00 0.00 40.70 1.90
2320 3621 7.666388 ACGAGATATGCTCCTACTAGTTTATGT 59.334 37.037 0.00 0.00 40.70 2.29
2321 3622 9.163899 CGAGATATGCTCCTACTAGTTTATGTA 57.836 37.037 0.00 0.00 40.70 2.29
2325 3626 6.956202 TGCTCCTACTAGTTTATGTACTCC 57.044 41.667 0.00 0.00 0.00 3.85
2326 3627 5.832060 TGCTCCTACTAGTTTATGTACTCCC 59.168 44.000 0.00 0.00 0.00 4.30
2327 3628 6.069994 GCTCCTACTAGTTTATGTACTCCCT 58.930 44.000 0.00 0.00 0.00 4.20
2328 3629 6.207221 GCTCCTACTAGTTTATGTACTCCCTC 59.793 46.154 0.00 0.00 0.00 4.30
2329 3630 7.463054 TCCTACTAGTTTATGTACTCCCTCT 57.537 40.000 0.00 0.00 0.00 3.69
2330 3631 7.288560 TCCTACTAGTTTATGTACTCCCTCTG 58.711 42.308 0.00 0.00 0.00 3.35
2331 3632 7.061688 CCTACTAGTTTATGTACTCCCTCTGT 58.938 42.308 0.00 0.00 0.00 3.41
2332 3633 8.216423 CCTACTAGTTTATGTACTCCCTCTGTA 58.784 40.741 0.00 0.00 0.00 2.74
2333 3634 9.624373 CTACTAGTTTATGTACTCCCTCTGTAA 57.376 37.037 0.00 0.00 0.00 2.41
2334 3635 8.890410 ACTAGTTTATGTACTCCCTCTGTAAA 57.110 34.615 0.00 0.00 0.00 2.01
2335 3636 8.968969 ACTAGTTTATGTACTCCCTCTGTAAAG 58.031 37.037 0.00 0.00 0.00 1.85
2336 3637 7.793948 AGTTTATGTACTCCCTCTGTAAAGT 57.206 36.000 0.00 0.00 0.00 2.66
2337 3638 8.890410 AGTTTATGTACTCCCTCTGTAAAGTA 57.110 34.615 0.00 0.00 0.00 2.24
2338 3639 9.317827 AGTTTATGTACTCCCTCTGTAAAGTAA 57.682 33.333 0.00 0.00 0.00 2.24
2372 3673 8.227791 TCAAGTATTTATTTGACGAGAAACTGC 58.772 33.333 0.00 0.00 28.70 4.40
2373 3674 7.667043 AGTATTTATTTGACGAGAAACTGCA 57.333 32.000 0.00 0.00 0.00 4.41
2374 3675 7.519002 AGTATTTATTTGACGAGAAACTGCAC 58.481 34.615 0.00 0.00 0.00 4.57
2375 3676 5.743026 TTTATTTGACGAGAAACTGCACA 57.257 34.783 0.00 0.00 0.00 4.57
2376 3677 5.743026 TTATTTGACGAGAAACTGCACAA 57.257 34.783 0.00 0.00 0.00 3.33
2377 3678 4.836125 ATTTGACGAGAAACTGCACAAT 57.164 36.364 0.00 0.00 0.00 2.71
2378 3679 3.607422 TTGACGAGAAACTGCACAATG 57.393 42.857 0.00 0.00 0.00 2.82
2379 3680 2.560504 TGACGAGAAACTGCACAATGT 58.439 42.857 0.00 0.00 0.00 2.71
2380 3681 2.543848 TGACGAGAAACTGCACAATGTC 59.456 45.455 0.00 0.00 0.00 3.06
2381 3682 2.543848 GACGAGAAACTGCACAATGTCA 59.456 45.455 0.00 0.00 0.00 3.58
2382 3683 3.141398 ACGAGAAACTGCACAATGTCAT 58.859 40.909 0.00 0.00 0.00 3.06
2383 3684 3.058708 ACGAGAAACTGCACAATGTCATG 60.059 43.478 0.00 0.00 0.00 3.07
2384 3685 3.058708 CGAGAAACTGCACAATGTCATGT 60.059 43.478 0.00 0.00 0.00 3.21
2397 3698 7.805700 CACAATGTCATGTGTATCTGTTAACA 58.194 34.615 8.28 8.28 44.46 2.41
2398 3699 8.453320 CACAATGTCATGTGTATCTGTTAACAT 58.547 33.333 9.13 0.00 44.46 2.71
2399 3700 9.665719 ACAATGTCATGTGTATCTGTTAACATA 57.334 29.630 9.13 1.90 32.15 2.29
2402 3703 9.665719 ATGTCATGTGTATCTGTTAACATAACA 57.334 29.630 9.13 10.67 36.03 2.41
2403 3704 9.495572 TGTCATGTGTATCTGTTAACATAACAA 57.504 29.630 9.13 5.85 30.14 2.83
2404 3705 9.973246 GTCATGTGTATCTGTTAACATAACAAG 57.027 33.333 9.13 6.89 32.15 3.16
2405 3706 8.664798 TCATGTGTATCTGTTAACATAACAAGC 58.335 33.333 9.13 4.31 32.15 4.01
2406 3707 7.056002 TGTGTATCTGTTAACATAACAAGCG 57.944 36.000 9.13 0.00 0.00 4.68
2407 3708 6.647481 TGTGTATCTGTTAACATAACAAGCGT 59.353 34.615 9.13 0.00 0.00 5.07
2408 3709 6.953743 GTGTATCTGTTAACATAACAAGCGTG 59.046 38.462 9.13 0.00 0.00 5.34
2409 3710 6.647481 TGTATCTGTTAACATAACAAGCGTGT 59.353 34.615 9.13 0.00 40.75 4.49
2410 3711 5.585500 TCTGTTAACATAACAAGCGTGTC 57.415 39.130 9.13 0.00 36.80 3.67
2411 3712 5.051153 TCTGTTAACATAACAAGCGTGTCA 58.949 37.500 9.13 0.00 36.80 3.58
2412 3713 5.699001 TCTGTTAACATAACAAGCGTGTCAT 59.301 36.000 9.13 0.00 36.80 3.06
2413 3714 5.684850 TGTTAACATAACAAGCGTGTCATG 58.315 37.500 13.65 13.65 36.80 3.07
2414 3715 5.237561 TGTTAACATAACAAGCGTGTCATGT 59.762 36.000 14.95 14.95 36.80 3.21
2415 3716 3.811722 ACATAACAAGCGTGTCATGTG 57.188 42.857 19.19 9.69 36.80 3.21
2416 3717 2.483877 ACATAACAAGCGTGTCATGTGG 59.516 45.455 19.19 3.60 36.80 4.17
2417 3718 2.535012 TAACAAGCGTGTCATGTGGA 57.465 45.000 5.55 0.00 36.80 4.02
2418 3719 1.896220 AACAAGCGTGTCATGTGGAT 58.104 45.000 5.55 0.00 36.80 3.41
2419 3720 1.896220 ACAAGCGTGTCATGTGGATT 58.104 45.000 0.00 0.00 29.49 3.01
2420 3721 2.229792 ACAAGCGTGTCATGTGGATTT 58.770 42.857 0.00 0.00 29.49 2.17
2421 3722 2.622942 ACAAGCGTGTCATGTGGATTTT 59.377 40.909 0.00 0.00 29.49 1.82
2422 3723 3.068024 ACAAGCGTGTCATGTGGATTTTT 59.932 39.130 0.00 0.00 29.49 1.94
2449 3750 8.650143 TTTTATAAAGAAAGGCTGATTGGACT 57.350 30.769 0.00 0.00 0.00 3.85
2450 3751 7.865706 TTATAAAGAAAGGCTGATTGGACTC 57.134 36.000 0.00 0.00 0.00 3.36
2451 3752 4.379302 AAAGAAAGGCTGATTGGACTCT 57.621 40.909 0.00 0.00 0.00 3.24
2452 3753 3.625649 AGAAAGGCTGATTGGACTCTC 57.374 47.619 0.00 0.00 0.00 3.20
2453 3754 3.180507 AGAAAGGCTGATTGGACTCTCT 58.819 45.455 0.00 0.00 0.00 3.10
2454 3755 3.586618 AGAAAGGCTGATTGGACTCTCTT 59.413 43.478 0.00 0.00 0.00 2.85
2455 3756 3.625649 AAGGCTGATTGGACTCTCTTC 57.374 47.619 0.00 0.00 0.00 2.87
2456 3757 1.836802 AGGCTGATTGGACTCTCTTCC 59.163 52.381 0.00 0.00 36.03 3.46
2457 3758 1.472376 GGCTGATTGGACTCTCTTCCG 60.472 57.143 0.00 0.00 38.69 4.30
2458 3759 1.205893 GCTGATTGGACTCTCTTCCGT 59.794 52.381 0.00 0.00 38.69 4.69
2459 3760 2.354203 GCTGATTGGACTCTCTTCCGTT 60.354 50.000 0.00 0.00 38.69 4.44
2460 3761 3.866449 GCTGATTGGACTCTCTTCCGTTT 60.866 47.826 0.00 0.00 38.69 3.60
2461 3762 4.319177 CTGATTGGACTCTCTTCCGTTTT 58.681 43.478 0.00 0.00 38.69 2.43
2462 3763 4.714632 TGATTGGACTCTCTTCCGTTTTT 58.285 39.130 0.00 0.00 38.69 1.94
2463 3764 4.755123 TGATTGGACTCTCTTCCGTTTTTC 59.245 41.667 0.00 0.00 38.69 2.29
2464 3765 4.417426 TTGGACTCTCTTCCGTTTTTCT 57.583 40.909 0.00 0.00 38.69 2.52
2465 3766 4.417426 TGGACTCTCTTCCGTTTTTCTT 57.583 40.909 0.00 0.00 38.69 2.52
2466 3767 4.777463 TGGACTCTCTTCCGTTTTTCTTT 58.223 39.130 0.00 0.00 38.69 2.52
2467 3768 4.814771 TGGACTCTCTTCCGTTTTTCTTTC 59.185 41.667 0.00 0.00 38.69 2.62
2468 3769 4.814771 GGACTCTCTTCCGTTTTTCTTTCA 59.185 41.667 0.00 0.00 0.00 2.69
2469 3770 5.470437 GGACTCTCTTCCGTTTTTCTTTCAT 59.530 40.000 0.00 0.00 0.00 2.57
2470 3771 6.305693 ACTCTCTTCCGTTTTTCTTTCATG 57.694 37.500 0.00 0.00 0.00 3.07
2471 3772 6.055588 ACTCTCTTCCGTTTTTCTTTCATGA 58.944 36.000 0.00 0.00 0.00 3.07
2472 3773 6.542370 ACTCTCTTCCGTTTTTCTTTCATGAA 59.458 34.615 3.38 3.38 0.00 2.57
2473 3774 6.959361 TCTCTTCCGTTTTTCTTTCATGAAG 58.041 36.000 8.41 3.62 36.67 3.02
2474 3775 6.017109 TCTCTTCCGTTTTTCTTTCATGAAGG 60.017 38.462 11.18 11.18 35.98 3.46
2475 3776 5.592688 TCTTCCGTTTTTCTTTCATGAAGGT 59.407 36.000 16.29 0.00 35.98 3.50
2554 3855 5.125417 CCACAATATAACCACAGGAAAGGTG 59.875 44.000 0.00 0.00 38.37 4.00
2641 3944 7.012989 AGTCAAAAGAAAAACTGGCTATACGTT 59.987 33.333 0.00 0.00 0.00 3.99
2643 3946 7.646130 TCAAAAGAAAAACTGGCTATACGTTTG 59.354 33.333 0.00 0.00 31.82 2.93
2675 3983 5.351948 TGAAGAAAGGGGAAAAGGTTTTG 57.648 39.130 0.00 0.00 0.00 2.44
2690 3998 3.872771 AGGTTTTGCTCAACTTTTGCATG 59.127 39.130 0.00 0.00 36.55 4.06
2699 4007 4.825422 TCAACTTTTGCATGAACAAACCA 58.175 34.783 0.00 0.00 39.18 3.67
2742 4050 7.600960 TGCAAGTTATGTTTGAGCATTTGATA 58.399 30.769 0.00 0.00 0.00 2.15
2779 4088 4.202151 GCATGGAACCCACAAATCCTTATC 60.202 45.833 0.00 0.00 35.80 1.75
2883 4192 1.645034 CTTGTCGGGTGCTACTGATG 58.355 55.000 0.00 0.00 0.00 3.07
3009 4318 2.036862 GACCACCTGAGTTTTCTACGGT 59.963 50.000 0.00 0.00 34.34 4.83
3021 4330 5.008316 AGTTTTCTACGGTTTGCAAAGTAGG 59.992 40.000 26.12 14.43 37.67 3.18
3028 4337 0.178964 TTTGCAAAGTAGGCCAGGCT 60.179 50.000 12.43 5.23 0.00 4.58
3065 4376 4.700700 ACAGTTGAAACCTACACCAGTAC 58.299 43.478 0.00 0.00 0.00 2.73
3100 4413 0.515564 CCGGCCGTTTACAGTTGAAG 59.484 55.000 26.12 0.00 0.00 3.02
3109 4422 2.736144 TACAGTTGAAGCCTACACCG 57.264 50.000 0.00 0.00 0.00 4.94
3625 4951 5.590259 AGAACAATTTCACTTGTAGCACAGT 59.410 36.000 0.00 0.00 38.38 3.55
3637 4963 4.248402 CACAGTTTGCAATGCCCG 57.752 55.556 1.53 0.00 0.00 6.13
3651 5004 0.607762 TGCCCGCATACTTGAAGCAA 60.608 50.000 0.00 0.00 0.00 3.91
3884 5246 4.979388 TGTTTTGGCATTTGTTTGCTTTC 58.021 34.783 0.00 0.00 42.38 2.62
3897 5259 5.280945 TGTTTGCTTTCACACATTTAGCTC 58.719 37.500 0.00 0.00 28.76 4.09
4067 5431 2.658285 CAATGCACAGTTCTGTTGAGC 58.342 47.619 2.47 5.00 33.54 4.26
4182 5550 9.543018 GAACTATGAAAGTGTAATTGTACTTGC 57.457 33.333 9.15 8.24 38.88 4.01
4235 5607 2.271944 AGTGGCACTTTGTTACTCCC 57.728 50.000 15.88 0.00 0.00 4.30
4236 5608 1.774856 AGTGGCACTTTGTTACTCCCT 59.225 47.619 15.88 0.00 0.00 4.20
4237 5609 2.152016 GTGGCACTTTGTTACTCCCTC 58.848 52.381 11.13 0.00 0.00 4.30
4238 5610 2.054799 TGGCACTTTGTTACTCCCTCT 58.945 47.619 0.00 0.00 0.00 3.69
4239 5611 2.224523 TGGCACTTTGTTACTCCCTCTG 60.225 50.000 0.00 0.00 0.00 3.35
4240 5612 2.224548 GGCACTTTGTTACTCCCTCTGT 60.225 50.000 0.00 0.00 0.00 3.41
4241 5613 3.067833 GCACTTTGTTACTCCCTCTGTC 58.932 50.000 0.00 0.00 0.00 3.51
4242 5614 3.665190 CACTTTGTTACTCCCTCTGTCC 58.335 50.000 0.00 0.00 0.00 4.02
4243 5615 2.638363 ACTTTGTTACTCCCTCTGTCCC 59.362 50.000 0.00 0.00 0.00 4.46
4244 5616 2.409064 TTGTTACTCCCTCTGTCCCA 57.591 50.000 0.00 0.00 0.00 4.37
4245 5617 2.409064 TGTTACTCCCTCTGTCCCAA 57.591 50.000 0.00 0.00 0.00 4.12
4246 5618 2.696775 TGTTACTCCCTCTGTCCCAAA 58.303 47.619 0.00 0.00 0.00 3.28
4247 5619 3.050089 TGTTACTCCCTCTGTCCCAAAA 58.950 45.455 0.00 0.00 0.00 2.44
4248 5620 3.655777 TGTTACTCCCTCTGTCCCAAAAT 59.344 43.478 0.00 0.00 0.00 1.82
4249 5621 4.847512 TGTTACTCCCTCTGTCCCAAAATA 59.152 41.667 0.00 0.00 0.00 1.40
4250 5622 5.491078 TGTTACTCCCTCTGTCCCAAAATAT 59.509 40.000 0.00 0.00 0.00 1.28
4251 5623 6.674861 TGTTACTCCCTCTGTCCCAAAATATA 59.325 38.462 0.00 0.00 0.00 0.86
4252 5624 7.183112 TGTTACTCCCTCTGTCCCAAAATATAA 59.817 37.037 0.00 0.00 0.00 0.98
4253 5625 6.253946 ACTCCCTCTGTCCCAAAATATAAG 57.746 41.667 0.00 0.00 0.00 1.73
4254 5626 5.970640 ACTCCCTCTGTCCCAAAATATAAGA 59.029 40.000 0.00 0.00 0.00 2.10
4255 5627 6.447084 ACTCCCTCTGTCCCAAAATATAAGAA 59.553 38.462 0.00 0.00 0.00 2.52
4256 5628 6.659824 TCCCTCTGTCCCAAAATATAAGAAC 58.340 40.000 0.00 0.00 0.00 3.01
4257 5629 5.527582 CCCTCTGTCCCAAAATATAAGAACG 59.472 44.000 0.00 0.00 0.00 3.95
4258 5630 6.113411 CCTCTGTCCCAAAATATAAGAACGT 58.887 40.000 0.00 0.00 0.00 3.99
4259 5631 6.258068 CCTCTGTCCCAAAATATAAGAACGTC 59.742 42.308 0.00 0.00 0.00 4.34
4260 5632 6.942976 TCTGTCCCAAAATATAAGAACGTCT 58.057 36.000 0.00 0.00 0.00 4.18
4261 5633 7.391620 TCTGTCCCAAAATATAAGAACGTCTT 58.608 34.615 0.00 0.00 40.35 3.01
4262 5634 7.881232 TCTGTCCCAAAATATAAGAACGTCTTT 59.119 33.333 5.74 0.00 37.89 2.52
4263 5635 7.812648 TGTCCCAAAATATAAGAACGTCTTTG 58.187 34.615 5.74 0.00 37.89 2.77
4264 5636 7.662258 TGTCCCAAAATATAAGAACGTCTTTGA 59.338 33.333 5.74 0.00 37.89 2.69
4265 5637 7.961283 GTCCCAAAATATAAGAACGTCTTTGAC 59.039 37.037 5.74 0.00 37.89 3.18
4266 5638 7.662258 TCCCAAAATATAAGAACGTCTTTGACA 59.338 33.333 5.74 0.00 37.89 3.58
4267 5639 7.749126 CCCAAAATATAAGAACGTCTTTGACAC 59.251 37.037 5.74 0.00 37.89 3.67
4268 5640 8.504005 CCAAAATATAAGAACGTCTTTGACACT 58.496 33.333 5.74 0.00 37.89 3.55
4271 5643 9.924650 AAATATAAGAACGTCTTTGACACTAGT 57.075 29.630 5.74 0.00 37.89 2.57
4276 5648 8.108551 AAGAACGTCTTTGACACTAGTATAGT 57.891 34.615 0.00 0.00 43.27 2.12
4306 5678 9.635404 AAAAACGTTCTTATATTATGGGATGGA 57.365 29.630 0.00 0.00 0.00 3.41
4307 5679 8.848474 AAACGTTCTTATATTATGGGATGGAG 57.152 34.615 0.00 0.00 0.00 3.86
4308 5680 6.947464 ACGTTCTTATATTATGGGATGGAGG 58.053 40.000 0.00 0.00 0.00 4.30
4309 5681 6.070194 ACGTTCTTATATTATGGGATGGAGGG 60.070 42.308 0.00 0.00 0.00 4.30
4310 5682 6.156256 CGTTCTTATATTATGGGATGGAGGGA 59.844 42.308 0.00 0.00 0.00 4.20
4311 5683 7.569240 GTTCTTATATTATGGGATGGAGGGAG 58.431 42.308 0.00 0.00 0.00 4.30
4399 5778 1.959042 AACAGTCTCAGCTGGTTGTG 58.041 50.000 15.13 9.48 40.59 3.33
4404 5783 0.108585 TCTCAGCTGGTTGTGGGTTC 59.891 55.000 15.13 0.00 0.00 3.62
4417 5796 0.179040 TGGGTTCGTTTGGTGAGGTC 60.179 55.000 0.00 0.00 0.00 3.85
4452 5831 8.581253 TTTCTCTCTTTTCTTTTCTGGACTTT 57.419 30.769 0.00 0.00 0.00 2.66
4486 5865 4.513692 GGTGCGGTGCTCATTACAAATATA 59.486 41.667 0.00 0.00 0.00 0.86
4501 5880 6.724893 ACAAATATATGTAAACCTTGGCCC 57.275 37.500 0.00 0.00 0.00 5.80
4538 5917 5.182950 TGGCGCTTTCTTCTCAATGAAAATA 59.817 36.000 7.64 0.00 33.79 1.40
4561 5940 2.622011 GCGCCCGGATGTGTTTGAA 61.622 57.895 0.73 0.00 0.00 2.69
4563 5942 0.109781 CGCCCGGATGTGTTTGAAAG 60.110 55.000 0.73 0.00 0.00 2.62
4567 5946 3.306019 GCCCGGATGTGTTTGAAAGAAAT 60.306 43.478 0.73 0.00 0.00 2.17
4568 5947 4.799255 GCCCGGATGTGTTTGAAAGAAATT 60.799 41.667 0.73 0.00 0.00 1.82
4569 5948 5.296748 CCCGGATGTGTTTGAAAGAAATTT 58.703 37.500 0.73 0.00 0.00 1.82
4570 5949 5.757808 CCCGGATGTGTTTGAAAGAAATTTT 59.242 36.000 0.73 0.00 0.00 1.82
4686 6075 1.204231 GTTCGTGGTCTAAGGGGACTC 59.796 57.143 0.00 0.00 42.68 3.36
4741 6130 1.475682 CCGAGGTACACAGTCTAACCC 59.524 57.143 0.00 0.00 32.10 4.11
4923 6314 7.905604 ATTTGAAGGCTATTTTAGGTTTTGC 57.094 32.000 0.00 0.00 0.00 3.68
4952 6343 4.005650 CTGGCATAGTGTTGACAATGACT 58.994 43.478 7.68 7.68 33.24 3.41
4972 6363 7.137490 TGACTTATTTGTTGCAGATCTCAAG 57.863 36.000 0.00 0.00 0.00 3.02
5059 6451 6.152932 AGTTTCTTGAAATGCATGTGTTCT 57.847 33.333 0.00 0.00 0.00 3.01
5108 6500 2.429930 CGACTTGGAACTGCCCCA 59.570 61.111 0.00 0.00 34.97 4.96
5138 6531 7.823745 AACCAATGTACACTTGATTCTTTCT 57.176 32.000 15.37 0.00 0.00 2.52
5139 6532 8.918202 AACCAATGTACACTTGATTCTTTCTA 57.082 30.769 15.37 0.00 0.00 2.10
5241 6634 8.389779 TCACTTGATAGTTTGAAGCAACAATA 57.610 30.769 0.00 0.00 30.26 1.90
5266 6659 2.067766 CATTTCAATGTGTTTGCCCCG 58.932 47.619 0.00 0.00 35.16 5.73
5267 6660 0.390860 TTTCAATGTGTTTGCCCCGG 59.609 50.000 0.00 0.00 35.16 5.73
5269 6662 0.757188 TCAATGTGTTTGCCCCGGTT 60.757 50.000 0.00 0.00 35.16 4.44
5294 6687 1.028905 TGCAGTGTTGGCAAAGTACC 58.971 50.000 0.00 0.00 38.54 3.34
5310 6703 6.571150 GCAAAGTACCTCGAGAACCTAAGTTA 60.571 42.308 15.71 0.00 35.94 2.24
5311 6704 6.756299 AAGTACCTCGAGAACCTAAGTTAG 57.244 41.667 15.71 2.65 35.94 2.34
5395 6788 6.604735 TGTTCTTCTTTTTAGCTCACACTC 57.395 37.500 0.00 0.00 0.00 3.51
5512 6909 4.787551 TCGCCATGGTTGGAAAATATACT 58.212 39.130 14.67 0.00 46.92 2.12
5615 7284 5.941555 AAGCTACACTGCTACCTTAGAAT 57.058 39.130 0.00 0.00 43.24 2.40
5729 7398 4.398319 GGTTCCTTCCTGTGATCTTGAAA 58.602 43.478 0.00 0.00 0.00 2.69
5783 7452 3.381388 GGGCTCCCCATCAGTTTTT 57.619 52.632 0.00 0.00 44.65 1.94
5814 7483 3.201290 CATGAACCTACCACTGATGCTC 58.799 50.000 0.00 0.00 0.00 4.26
5832 7501 0.183492 TCTGGAGGTGCTTGCTTTGT 59.817 50.000 0.00 0.00 0.00 2.83
5865 7534 1.006281 AGCCCATCAGAAAGCATGGAA 59.994 47.619 0.17 0.00 42.11 3.53
5867 7536 2.433239 GCCCATCAGAAAGCATGGAAAT 59.567 45.455 0.17 0.00 42.11 2.17
5883 7552 6.678900 GCATGGAAATTACTGAAGGTTAGCAG 60.679 42.308 0.00 0.00 38.10 4.24
5889 7558 8.635765 AAATTACTGAAGGTTAGCAGATTTGA 57.364 30.769 0.00 0.00 36.07 2.69
5949 7619 7.718753 ACTTCTGTTGAGTCATCTGAAGAAAAT 59.281 33.333 34.40 21.09 39.36 1.82
5968 7638 0.325296 TTCTACCTCAGGGTGCGGAT 60.325 55.000 0.00 0.00 46.75 4.18
6025 7695 0.887933 TTGAGGGCAAAATTCTCGCC 59.112 50.000 4.54 4.54 45.47 5.54
6028 7698 2.566010 GGCAAAATTCTCGCCGCA 59.434 55.556 0.00 0.00 35.79 5.69
6123 7793 2.268298 CCGTTCGGTCATGAAACTAGG 58.732 52.381 0.00 0.00 0.00 3.02
6383 8054 5.277345 CGCAAAGCTGTAAGAAAACACTACT 60.277 40.000 0.00 0.00 34.07 2.57
6399 8070 3.701542 CACTACTGCTGGTCATCTTCCTA 59.298 47.826 0.00 0.00 0.00 2.94
6507 8178 2.761786 ATGGCAATGCTACCTCCATT 57.238 45.000 4.82 0.00 34.09 3.16
6755 8426 7.458409 ACAGTTGCTTTGATCTTCAATATGT 57.542 32.000 0.00 1.00 36.11 2.29
6893 8564 5.440685 CGCTTTTCTTAGGTAACACACAAG 58.559 41.667 0.00 0.00 41.41 3.16
6909 8580 8.902540 AACACACAAGTCTAATCTTGATACAA 57.097 30.769 12.38 0.00 45.11 2.41
7252 8923 0.462403 GCTCGTACCCTCTCGTCTCT 60.462 60.000 0.00 0.00 0.00 3.10
7253 8924 1.574134 CTCGTACCCTCTCGTCTCTC 58.426 60.000 0.00 0.00 0.00 3.20
7254 8925 1.137479 CTCGTACCCTCTCGTCTCTCT 59.863 57.143 0.00 0.00 0.00 3.10
7739 9417 7.645058 AAAGATTGACAGTTATGGGTATTGG 57.355 36.000 0.00 0.00 0.00 3.16
7772 9450 9.992442 CTCCTAATATACCCACTCTATTCCTTA 57.008 37.037 0.00 0.00 0.00 2.69
7826 9504 4.215827 TCCAAAATTTTGCACATGGAATGC 59.784 37.500 22.90 0.00 41.64 3.56
7890 9569 6.486320 TCAACTTTTATCAATGTCAGAGTGCA 59.514 34.615 0.00 0.00 0.00 4.57
8164 9843 3.334691 CGTAAGGCAGTCTCCAAAATCA 58.665 45.455 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.226746 ACGACTACAAGCACCAAAGC 58.773 50.000 0.00 0.00 0.00 3.51
1 2 2.602217 GCAACGACTACAAGCACCAAAG 60.602 50.000 0.00 0.00 0.00 2.77
2 3 1.332375 GCAACGACTACAAGCACCAAA 59.668 47.619 0.00 0.00 0.00 3.28
5 6 0.882927 TGGCAACGACTACAAGCACC 60.883 55.000 0.00 0.00 42.51 5.01
6 7 0.512952 CTGGCAACGACTACAAGCAC 59.487 55.000 0.00 0.00 42.51 4.40
7 8 0.602638 CCTGGCAACGACTACAAGCA 60.603 55.000 0.00 0.00 42.51 3.91
8 9 0.602905 ACCTGGCAACGACTACAAGC 60.603 55.000 0.00 0.00 42.51 4.01
9 10 1.148310 CACCTGGCAACGACTACAAG 58.852 55.000 0.00 0.00 42.51 3.16
10 11 0.250124 CCACCTGGCAACGACTACAA 60.250 55.000 0.00 0.00 42.51 2.41
11 12 1.369692 CCACCTGGCAACGACTACA 59.630 57.895 0.00 0.00 42.51 2.74
12 13 0.669625 GACCACCTGGCAACGACTAC 60.670 60.000 0.00 0.00 39.32 2.73
13 14 0.830444 AGACCACCTGGCAACGACTA 60.830 55.000 0.00 0.00 39.32 2.59
14 15 2.140792 AGACCACCTGGCAACGACT 61.141 57.895 0.00 0.00 39.32 4.18
15 16 1.961277 CAGACCACCTGGCAACGAC 60.961 63.158 0.00 0.00 39.23 4.34
16 17 2.425592 CAGACCACCTGGCAACGA 59.574 61.111 0.00 0.00 39.23 3.85
17 18 3.357079 GCAGACCACCTGGCAACG 61.357 66.667 0.00 0.00 43.13 4.10
18 19 3.357079 CGCAGACCACCTGGCAAC 61.357 66.667 0.00 0.00 43.13 4.17
19 20 4.641645 CCGCAGACCACCTGGCAA 62.642 66.667 0.00 0.00 43.13 4.52
21 22 4.101448 ATCCGCAGACCACCTGGC 62.101 66.667 0.00 0.00 43.13 4.85
22 23 2.187946 GATCCGCAGACCACCTGG 59.812 66.667 0.00 0.00 43.13 4.45
23 24 1.153489 CAGATCCGCAGACCACCTG 60.153 63.158 0.00 0.00 45.67 4.00
24 25 2.362369 CCAGATCCGCAGACCACCT 61.362 63.158 0.00 0.00 0.00 4.00
25 26 1.690219 ATCCAGATCCGCAGACCACC 61.690 60.000 0.00 0.00 0.00 4.61
26 27 0.531532 CATCCAGATCCGCAGACCAC 60.532 60.000 0.00 0.00 0.00 4.16
27 28 0.977627 ACATCCAGATCCGCAGACCA 60.978 55.000 0.00 0.00 0.00 4.02
28 29 1.040646 TACATCCAGATCCGCAGACC 58.959 55.000 0.00 0.00 0.00 3.85
29 30 2.890808 TTACATCCAGATCCGCAGAC 57.109 50.000 0.00 0.00 0.00 3.51
30 31 4.422073 AAATTACATCCAGATCCGCAGA 57.578 40.909 0.00 0.00 0.00 4.26
31 32 5.505173 AAAAATTACATCCAGATCCGCAG 57.495 39.130 0.00 0.00 0.00 5.18
32 33 7.581213 AATAAAAATTACATCCAGATCCGCA 57.419 32.000 0.00 0.00 0.00 5.69
33 34 8.352942 AGAAATAAAAATTACATCCAGATCCGC 58.647 33.333 0.00 0.00 0.00 5.54
34 35 9.669353 CAGAAATAAAAATTACATCCAGATCCG 57.331 33.333 0.00 0.00 0.00 4.18
35 36 9.971922 CCAGAAATAAAAATTACATCCAGATCC 57.028 33.333 0.00 0.00 0.00 3.36
38 39 9.308000 ACACCAGAAATAAAAATTACATCCAGA 57.692 29.630 0.00 0.00 0.00 3.86
39 40 9.927668 AACACCAGAAATAAAAATTACATCCAG 57.072 29.630 0.00 0.00 0.00 3.86
40 41 9.921637 GAACACCAGAAATAAAAATTACATCCA 57.078 29.630 0.00 0.00 0.00 3.41
41 42 9.072294 CGAACACCAGAAATAAAAATTACATCC 57.928 33.333 0.00 0.00 0.00 3.51
42 43 9.620660 ACGAACACCAGAAATAAAAATTACATC 57.379 29.630 0.00 0.00 0.00 3.06
43 44 9.974980 AACGAACACCAGAAATAAAAATTACAT 57.025 25.926 0.00 0.00 0.00 2.29
44 45 9.239002 CAACGAACACCAGAAATAAAAATTACA 57.761 29.630 0.00 0.00 0.00 2.41
45 46 9.240159 ACAACGAACACCAGAAATAAAAATTAC 57.760 29.630 0.00 0.00 0.00 1.89
47 48 9.240159 GTACAACGAACACCAGAAATAAAAATT 57.760 29.630 0.00 0.00 0.00 1.82
48 49 8.626526 AGTACAACGAACACCAGAAATAAAAAT 58.373 29.630 0.00 0.00 0.00 1.82
49 50 7.911205 CAGTACAACGAACACCAGAAATAAAAA 59.089 33.333 0.00 0.00 0.00 1.94
50 51 7.411274 CAGTACAACGAACACCAGAAATAAAA 58.589 34.615 0.00 0.00 0.00 1.52
51 52 6.512091 GCAGTACAACGAACACCAGAAATAAA 60.512 38.462 0.00 0.00 0.00 1.40
52 53 5.049954 GCAGTACAACGAACACCAGAAATAA 60.050 40.000 0.00 0.00 0.00 1.40
53 54 4.449743 GCAGTACAACGAACACCAGAAATA 59.550 41.667 0.00 0.00 0.00 1.40
54 55 3.250040 GCAGTACAACGAACACCAGAAAT 59.750 43.478 0.00 0.00 0.00 2.17
55 56 2.610374 GCAGTACAACGAACACCAGAAA 59.390 45.455 0.00 0.00 0.00 2.52
56 57 2.206750 GCAGTACAACGAACACCAGAA 58.793 47.619 0.00 0.00 0.00 3.02
57 58 1.539496 GGCAGTACAACGAACACCAGA 60.539 52.381 0.00 0.00 0.00 3.86
58 59 0.865769 GGCAGTACAACGAACACCAG 59.134 55.000 0.00 0.00 0.00 4.00
59 60 0.178301 TGGCAGTACAACGAACACCA 59.822 50.000 0.00 0.00 0.00 4.17
60 61 1.196808 CATGGCAGTACAACGAACACC 59.803 52.381 0.00 0.00 0.00 4.16
61 62 2.139917 TCATGGCAGTACAACGAACAC 58.860 47.619 0.00 0.00 0.00 3.32
62 63 2.535012 TCATGGCAGTACAACGAACA 57.465 45.000 0.00 0.00 0.00 3.18
63 64 3.435327 TCAATCATGGCAGTACAACGAAC 59.565 43.478 0.00 0.00 0.00 3.95
64 65 3.669536 TCAATCATGGCAGTACAACGAA 58.330 40.909 0.00 0.00 0.00 3.85
65 66 3.326836 TCAATCATGGCAGTACAACGA 57.673 42.857 0.00 0.00 0.00 3.85
66 67 3.684305 TCTTCAATCATGGCAGTACAACG 59.316 43.478 0.00 0.00 0.00 4.10
67 68 5.355071 TCATCTTCAATCATGGCAGTACAAC 59.645 40.000 0.00 0.00 0.00 3.32
68 69 5.499313 TCATCTTCAATCATGGCAGTACAA 58.501 37.500 0.00 0.00 0.00 2.41
69 70 5.101648 TCATCTTCAATCATGGCAGTACA 57.898 39.130 0.00 0.00 0.00 2.90
70 71 6.630444 ATTCATCTTCAATCATGGCAGTAC 57.370 37.500 0.00 0.00 0.00 2.73
71 72 7.738847 TCTATTCATCTTCAATCATGGCAGTA 58.261 34.615 0.00 0.00 0.00 2.74
72 73 6.598503 TCTATTCATCTTCAATCATGGCAGT 58.401 36.000 0.00 0.00 0.00 4.40
73 74 7.689446 ATCTATTCATCTTCAATCATGGCAG 57.311 36.000 0.00 0.00 0.00 4.85
74 75 7.039993 CCAATCTATTCATCTTCAATCATGGCA 60.040 37.037 0.00 0.00 0.00 4.92
75 76 7.176165 TCCAATCTATTCATCTTCAATCATGGC 59.824 37.037 0.00 0.00 0.00 4.40
76 77 8.631480 TCCAATCTATTCATCTTCAATCATGG 57.369 34.615 0.00 0.00 0.00 3.66
78 79 9.863650 ACTTCCAATCTATTCATCTTCAATCAT 57.136 29.630 0.00 0.00 0.00 2.45
79 80 9.690913 AACTTCCAATCTATTCATCTTCAATCA 57.309 29.630 0.00 0.00 0.00 2.57
149 150 4.970662 ATTTTGCTGTAGTATGCACCAG 57.029 40.909 0.00 0.00 39.05 4.00
151 152 5.309323 TGAATTTTGCTGTAGTATGCACC 57.691 39.130 0.00 0.00 39.05 5.01
159 170 6.154445 AGCTCACATTTGAATTTTGCTGTAG 58.846 36.000 0.00 0.00 29.52 2.74
164 175 4.229096 TCGAGCTCACATTTGAATTTTGC 58.771 39.130 15.40 0.00 0.00 3.68
229 240 3.636764 TGGAGTTCTTTTCAAAAGAGGGC 59.363 43.478 12.35 7.63 0.00 5.19
236 247 8.157476 AGCTAGAGTATTGGAGTTCTTTTCAAA 58.843 33.333 0.00 0.00 0.00 2.69
242 253 5.596772 GGAGAGCTAGAGTATTGGAGTTCTT 59.403 44.000 0.00 0.00 30.66 2.52
410 831 8.661257 TCCGTTCACAAATACTATAATGTTGTG 58.339 33.333 8.21 8.21 46.62 3.33
411 832 8.780846 TCCGTTCACAAATACTATAATGTTGT 57.219 30.769 0.00 0.00 32.78 3.32
412 833 8.335356 CCTCCGTTCACAAATACTATAATGTTG 58.665 37.037 0.00 0.00 0.00 3.33
413 834 7.497909 CCCTCCGTTCACAAATACTATAATGTT 59.502 37.037 0.00 0.00 0.00 2.71
455 876 4.040461 GGGATCAATAAATCAGGACGGAGA 59.960 45.833 0.00 0.00 0.00 3.71
564 1114 9.567776 TGTATTGTTGGATCCGTATTTGAATAT 57.432 29.630 7.39 0.00 0.00 1.28
566 1116 7.873719 TGTATTGTTGGATCCGTATTTGAAT 57.126 32.000 7.39 1.33 0.00 2.57
569 1119 8.925161 AAATTGTATTGTTGGATCCGTATTTG 57.075 30.769 7.39 0.00 0.00 2.32
653 1204 9.331282 CTATCTCCGTCCTTTATTGATCTTTTT 57.669 33.333 0.00 0.00 0.00 1.94
656 1217 7.604657 ACTATCTCCGTCCTTTATTGATCTT 57.395 36.000 0.00 0.00 0.00 2.40
658 1219 8.113173 ACTACTATCTCCGTCCTTTATTGATC 57.887 38.462 0.00 0.00 0.00 2.92
672 1233 2.599677 CCACCCAGGACTACTATCTCC 58.400 57.143 0.00 0.00 41.22 3.71
913 1489 0.185901 CAGAGGAGGAGGAGGAGGAG 59.814 65.000 0.00 0.00 0.00 3.69
914 1490 1.292941 CCAGAGGAGGAGGAGGAGGA 61.293 65.000 0.00 0.00 0.00 3.71
915 1491 1.232792 CCAGAGGAGGAGGAGGAGG 59.767 68.421 0.00 0.00 0.00 4.30
916 1492 0.338120 AACCAGAGGAGGAGGAGGAG 59.662 60.000 0.00 0.00 0.00 3.69
917 1493 0.336737 GAACCAGAGGAGGAGGAGGA 59.663 60.000 0.00 0.00 0.00 3.71
918 1494 0.041833 TGAACCAGAGGAGGAGGAGG 59.958 60.000 0.00 0.00 0.00 4.30
991 1578 1.310933 ACGTACTTCATCGCCGTCCT 61.311 55.000 0.00 0.00 0.00 3.85
1123 1720 3.201708 AGGGAAGAGATGAAGAATGGGTG 59.798 47.826 0.00 0.00 0.00 4.61
1136 1733 1.657804 GTGGGAAGGAAGGGAAGAGA 58.342 55.000 0.00 0.00 0.00 3.10
1196 1808 2.428530 CTGGAAGGCCAAAAATAGAGCC 59.571 50.000 5.01 0.00 45.41 4.70
1360 1985 2.497675 CAGTATGACACTACACTGGCCT 59.502 50.000 3.32 0.00 39.69 5.19
1361 1986 2.893637 CAGTATGACACTACACTGGCC 58.106 52.381 0.00 0.00 39.69 5.36
1364 1989 3.096852 TCCCCAGTATGACACTACACTG 58.903 50.000 0.00 0.00 39.69 3.66
1365 1990 3.468071 TCCCCAGTATGACACTACACT 57.532 47.619 0.00 0.00 39.69 3.55
1366 1991 5.221461 CCTTATCCCCAGTATGACACTACAC 60.221 48.000 0.00 0.00 39.69 2.90
1367 1992 4.899457 CCTTATCCCCAGTATGACACTACA 59.101 45.833 0.00 0.00 39.69 2.74
1500 2552 6.767456 TGGTTTTTCTATAGTTCCGGTGTAA 58.233 36.000 0.00 0.00 0.00 2.41
1507 2559 4.095932 CCCGCTTGGTTTTTCTATAGTTCC 59.904 45.833 0.00 0.00 0.00 3.62
1510 2562 4.563140 TCCCGCTTGGTTTTTCTATAGT 57.437 40.909 0.00 0.00 34.77 2.12
1511 2563 5.588648 TCAATCCCGCTTGGTTTTTCTATAG 59.411 40.000 0.00 0.00 34.77 1.31
1512 2564 5.502079 TCAATCCCGCTTGGTTTTTCTATA 58.498 37.500 0.00 0.00 34.77 1.31
1525 2577 1.598701 GCTGGCTTTTCAATCCCGCT 61.599 55.000 0.00 0.00 0.00 5.52
1529 2581 3.430779 GCAGCTGGCTTTTCAATCC 57.569 52.632 17.12 0.00 40.25 3.01
1622 2676 1.406341 CCGCCGATTAGAGGACCAAAA 60.406 52.381 0.00 0.00 0.00 2.44
1624 2678 1.820581 CCGCCGATTAGAGGACCAA 59.179 57.895 0.00 0.00 0.00 3.67
1641 2695 4.789802 GCGGAGTAATGCAAAGATTAAGCC 60.790 45.833 0.00 0.00 0.00 4.35
1663 2720 7.992754 ATAATCAATCTTCTCCACCTAATGC 57.007 36.000 0.00 0.00 0.00 3.56
1707 2764 3.787001 CTGGGGGAGAAGACCGGC 61.787 72.222 0.00 0.00 0.00 6.13
1708 2765 2.284699 ACTGGGGGAGAAGACCGG 60.285 66.667 0.00 0.00 36.70 5.28
1709 2766 1.481056 AACACTGGGGGAGAAGACCG 61.481 60.000 0.00 0.00 0.00 4.79
1822 2880 5.546526 ACAGAGTTGGCTTTAAGAAGAGAG 58.453 41.667 0.00 0.00 34.71 3.20
1842 2900 8.968242 CATGAAATTTAATGCATGAGATGACAG 58.032 33.333 0.00 0.00 40.29 3.51
1905 2964 7.025365 GTGAACCGAAACAAACTTACTTTTCT 58.975 34.615 0.00 0.00 0.00 2.52
2195 3260 0.320073 CCAAAACGTAGACCTCGCCA 60.320 55.000 0.00 0.00 0.00 5.69
2231 3532 2.034879 CGGCGATGTTGGAGCAGTT 61.035 57.895 0.00 0.00 0.00 3.16
2232 3533 2.434884 CGGCGATGTTGGAGCAGT 60.435 61.111 0.00 0.00 0.00 4.40
2233 3534 1.577328 AAACGGCGATGTTGGAGCAG 61.577 55.000 16.62 0.00 31.10 4.24
2234 3535 1.599518 AAACGGCGATGTTGGAGCA 60.600 52.632 16.62 0.00 31.10 4.26
2235 3536 1.154225 CAAACGGCGATGTTGGAGC 60.154 57.895 16.62 0.00 31.10 4.70
2236 3537 0.165944 GACAAACGGCGATGTTGGAG 59.834 55.000 16.62 0.00 31.10 3.86
2237 3538 1.231958 GGACAAACGGCGATGTTGGA 61.232 55.000 16.62 0.00 31.10 3.53
2238 3539 1.209127 GGACAAACGGCGATGTTGG 59.791 57.895 16.62 0.00 31.10 3.77
2239 3540 1.154488 CGGACAAACGGCGATGTTG 60.154 57.895 16.62 16.72 31.10 3.33
2240 3541 2.961669 GCGGACAAACGGCGATGTT 61.962 57.895 16.62 0.99 35.33 2.71
2241 3542 3.419759 GCGGACAAACGGCGATGT 61.420 61.111 16.62 18.44 35.33 3.06
2247 3548 1.601419 TAGGAGAGGCGGACAAACGG 61.601 60.000 0.00 0.00 0.00 4.44
2248 3549 0.179134 CTAGGAGAGGCGGACAAACG 60.179 60.000 0.00 0.00 0.00 3.60
2249 3550 0.896226 ACTAGGAGAGGCGGACAAAC 59.104 55.000 0.00 0.00 0.00 2.93
2250 3551 0.895530 CACTAGGAGAGGCGGACAAA 59.104 55.000 0.00 0.00 0.00 2.83
2251 3552 1.605058 GCACTAGGAGAGGCGGACAA 61.605 60.000 0.00 0.00 0.00 3.18
2252 3553 2.052690 GCACTAGGAGAGGCGGACA 61.053 63.158 0.00 0.00 0.00 4.02
2253 3554 1.605058 TTGCACTAGGAGAGGCGGAC 61.605 60.000 0.00 0.00 0.00 4.79
2254 3555 0.902984 TTTGCACTAGGAGAGGCGGA 60.903 55.000 0.00 0.00 0.00 5.54
2255 3556 0.036388 TTTTGCACTAGGAGAGGCGG 60.036 55.000 0.00 0.00 0.00 6.13
2256 3557 1.079503 GTTTTGCACTAGGAGAGGCG 58.920 55.000 0.00 0.00 0.00 5.52
2257 3558 2.079925 CAGTTTTGCACTAGGAGAGGC 58.920 52.381 0.00 0.00 32.76 4.70
2270 3571 6.582437 AAAAAGAAACCGTATGCAGTTTTG 57.418 33.333 3.62 0.00 36.36 2.44
2271 3572 6.415573 CGTAAAAAGAAACCGTATGCAGTTTT 59.584 34.615 3.62 0.00 36.36 2.43
2272 3573 5.910723 CGTAAAAAGAAACCGTATGCAGTTT 59.089 36.000 1.76 1.76 38.85 2.66
2273 3574 5.236911 TCGTAAAAAGAAACCGTATGCAGTT 59.763 36.000 0.00 0.00 0.00 3.16
2274 3575 4.751098 TCGTAAAAAGAAACCGTATGCAGT 59.249 37.500 0.00 0.00 0.00 4.40
2275 3576 5.119588 TCTCGTAAAAAGAAACCGTATGCAG 59.880 40.000 0.00 0.00 0.00 4.41
2276 3577 4.989797 TCTCGTAAAAAGAAACCGTATGCA 59.010 37.500 0.00 0.00 0.00 3.96
2277 3578 5.520022 TCTCGTAAAAAGAAACCGTATGC 57.480 39.130 0.00 0.00 0.00 3.14
2278 3579 7.792508 GCATATCTCGTAAAAAGAAACCGTATG 59.207 37.037 0.00 0.00 0.00 2.39
2279 3580 7.709613 AGCATATCTCGTAAAAAGAAACCGTAT 59.290 33.333 0.00 0.00 0.00 3.06
2280 3581 7.037438 AGCATATCTCGTAAAAAGAAACCGTA 58.963 34.615 0.00 0.00 0.00 4.02
2281 3582 5.873164 AGCATATCTCGTAAAAAGAAACCGT 59.127 36.000 0.00 0.00 0.00 4.83
2282 3583 6.345920 AGCATATCTCGTAAAAAGAAACCG 57.654 37.500 0.00 0.00 0.00 4.44
2283 3584 6.539103 AGGAGCATATCTCGTAAAAAGAAACC 59.461 38.462 0.00 0.00 42.82 3.27
2284 3585 7.541122 AGGAGCATATCTCGTAAAAAGAAAC 57.459 36.000 0.00 0.00 42.82 2.78
2285 3586 8.475639 AGTAGGAGCATATCTCGTAAAAAGAAA 58.524 33.333 0.00 0.00 41.98 2.52
2286 3587 8.008513 AGTAGGAGCATATCTCGTAAAAAGAA 57.991 34.615 0.00 0.00 41.98 2.52
2287 3588 7.584122 AGTAGGAGCATATCTCGTAAAAAGA 57.416 36.000 0.00 0.00 41.98 2.52
2288 3589 8.569641 ACTAGTAGGAGCATATCTCGTAAAAAG 58.430 37.037 1.45 6.83 41.98 2.27
2289 3590 8.461249 ACTAGTAGGAGCATATCTCGTAAAAA 57.539 34.615 1.45 0.00 41.98 1.94
2290 3591 8.461249 AACTAGTAGGAGCATATCTCGTAAAA 57.539 34.615 0.00 0.59 41.98 1.52
2291 3592 8.461249 AAACTAGTAGGAGCATATCTCGTAAA 57.539 34.615 0.00 0.82 41.98 2.01
2292 3593 9.736414 ATAAACTAGTAGGAGCATATCTCGTAA 57.264 33.333 0.00 0.00 41.98 3.18
2293 3594 9.163899 CATAAACTAGTAGGAGCATATCTCGTA 57.836 37.037 0.00 0.00 42.82 3.43
2294 3595 7.666388 ACATAAACTAGTAGGAGCATATCTCGT 59.334 37.037 0.00 0.00 42.82 4.18
2295 3596 8.046294 ACATAAACTAGTAGGAGCATATCTCG 57.954 38.462 0.00 0.00 42.82 4.04
2299 3600 9.245481 GGAGTACATAAACTAGTAGGAGCATAT 57.755 37.037 0.00 0.00 0.00 1.78
2300 3601 7.668886 GGGAGTACATAAACTAGTAGGAGCATA 59.331 40.741 0.00 0.00 0.00 3.14
2301 3602 6.494146 GGGAGTACATAAACTAGTAGGAGCAT 59.506 42.308 0.00 0.00 0.00 3.79
2302 3603 5.832060 GGGAGTACATAAACTAGTAGGAGCA 59.168 44.000 0.00 0.00 0.00 4.26
2303 3604 6.069994 AGGGAGTACATAAACTAGTAGGAGC 58.930 44.000 0.00 0.00 0.00 4.70
2304 3605 7.446013 CAGAGGGAGTACATAAACTAGTAGGAG 59.554 44.444 0.00 0.00 0.00 3.69
2305 3606 7.092083 ACAGAGGGAGTACATAAACTAGTAGGA 60.092 40.741 0.00 0.00 0.00 2.94
2306 3607 7.061688 ACAGAGGGAGTACATAAACTAGTAGG 58.938 42.308 0.00 0.00 0.00 3.18
2307 3608 9.624373 TTACAGAGGGAGTACATAAACTAGTAG 57.376 37.037 0.00 0.00 0.00 2.57
2308 3609 9.979897 TTTACAGAGGGAGTACATAAACTAGTA 57.020 33.333 0.00 0.00 0.00 1.82
2309 3610 8.890410 TTTACAGAGGGAGTACATAAACTAGT 57.110 34.615 0.00 0.00 0.00 2.57
2310 3611 8.968969 ACTTTACAGAGGGAGTACATAAACTAG 58.031 37.037 0.00 0.00 0.00 2.57
2311 3612 8.890410 ACTTTACAGAGGGAGTACATAAACTA 57.110 34.615 0.00 0.00 0.00 2.24
2312 3613 7.793948 ACTTTACAGAGGGAGTACATAAACT 57.206 36.000 0.00 0.00 0.00 2.66
2346 3647 8.227791 GCAGTTTCTCGTCAAATAAATACTTGA 58.772 33.333 0.00 0.00 0.00 3.02
2347 3648 8.015087 TGCAGTTTCTCGTCAAATAAATACTTG 58.985 33.333 0.00 0.00 0.00 3.16
2348 3649 8.015658 GTGCAGTTTCTCGTCAAATAAATACTT 58.984 33.333 0.00 0.00 0.00 2.24
2349 3650 7.172532 TGTGCAGTTTCTCGTCAAATAAATACT 59.827 33.333 0.00 0.00 0.00 2.12
2350 3651 7.295201 TGTGCAGTTTCTCGTCAAATAAATAC 58.705 34.615 0.00 0.00 0.00 1.89
2351 3652 7.428282 TGTGCAGTTTCTCGTCAAATAAATA 57.572 32.000 0.00 0.00 0.00 1.40
2352 3653 6.312399 TGTGCAGTTTCTCGTCAAATAAAT 57.688 33.333 0.00 0.00 0.00 1.40
2353 3654 5.743026 TGTGCAGTTTCTCGTCAAATAAA 57.257 34.783 0.00 0.00 0.00 1.40
2354 3655 5.743026 TTGTGCAGTTTCTCGTCAAATAA 57.257 34.783 0.00 0.00 0.00 1.40
2355 3656 5.238432 ACATTGTGCAGTTTCTCGTCAAATA 59.762 36.000 0.00 0.00 0.00 1.40
2356 3657 4.036734 ACATTGTGCAGTTTCTCGTCAAAT 59.963 37.500 0.00 0.00 0.00 2.32
2357 3658 3.376859 ACATTGTGCAGTTTCTCGTCAAA 59.623 39.130 0.00 0.00 0.00 2.69
2358 3659 2.942376 ACATTGTGCAGTTTCTCGTCAA 59.058 40.909 0.00 0.00 0.00 3.18
2359 3660 2.543848 GACATTGTGCAGTTTCTCGTCA 59.456 45.455 0.00 0.00 0.00 4.35
2360 3661 2.543848 TGACATTGTGCAGTTTCTCGTC 59.456 45.455 0.00 0.00 0.00 4.20
2361 3662 2.560504 TGACATTGTGCAGTTTCTCGT 58.439 42.857 0.00 0.00 0.00 4.18
2362 3663 3.058708 ACATGACATTGTGCAGTTTCTCG 60.059 43.478 0.00 0.00 0.00 4.04
2363 3664 4.224433 CACATGACATTGTGCAGTTTCTC 58.776 43.478 0.00 0.00 40.45 2.87
2364 3665 4.233123 CACATGACATTGTGCAGTTTCT 57.767 40.909 0.00 0.00 40.45 2.52
2373 3674 7.977789 TGTTAACAGATACACATGACATTGT 57.022 32.000 3.59 0.00 0.00 2.71
2376 3677 9.665719 TGTTATGTTAACAGATACACATGACAT 57.334 29.630 14.65 0.00 39.72 3.06
2377 3678 9.495572 TTGTTATGTTAACAGATACACATGACA 57.504 29.630 14.65 5.35 41.65 3.58
2378 3679 9.973246 CTTGTTATGTTAACAGATACACATGAC 57.027 33.333 14.65 2.76 36.92 3.06
2379 3680 8.664798 GCTTGTTATGTTAACAGATACACATGA 58.335 33.333 14.65 2.89 32.15 3.07
2380 3681 7.635973 CGCTTGTTATGTTAACAGATACACATG 59.364 37.037 14.65 12.95 32.15 3.21
2381 3682 7.333423 ACGCTTGTTATGTTAACAGATACACAT 59.667 33.333 14.65 0.00 34.27 3.21
2382 3683 6.647481 ACGCTTGTTATGTTAACAGATACACA 59.353 34.615 14.65 8.17 0.00 3.72
2383 3684 6.953743 CACGCTTGTTATGTTAACAGATACAC 59.046 38.462 14.65 5.59 0.00 2.90
2384 3685 6.647481 ACACGCTTGTTATGTTAACAGATACA 59.353 34.615 14.65 13.79 28.43 2.29
2385 3686 7.057149 ACACGCTTGTTATGTTAACAGATAC 57.943 36.000 14.65 11.54 28.43 2.24
2386 3687 6.869388 TGACACGCTTGTTATGTTAACAGATA 59.131 34.615 14.65 0.00 35.47 1.98
2387 3688 5.699001 TGACACGCTTGTTATGTTAACAGAT 59.301 36.000 14.65 0.42 35.47 2.90
2388 3689 5.051153 TGACACGCTTGTTATGTTAACAGA 58.949 37.500 14.65 6.64 35.47 3.41
2389 3690 5.337219 TGACACGCTTGTTATGTTAACAG 57.663 39.130 14.65 0.16 35.47 3.16
2390 3691 5.684850 CATGACACGCTTGTTATGTTAACA 58.315 37.500 16.98 11.41 42.24 2.41
2397 3698 3.052455 TCCACATGACACGCTTGTTAT 57.948 42.857 0.00 0.00 35.47 1.89
2398 3699 2.535012 TCCACATGACACGCTTGTTA 57.465 45.000 0.00 0.00 35.47 2.41
2399 3700 1.896220 ATCCACATGACACGCTTGTT 58.104 45.000 0.00 0.00 35.47 2.83
2400 3701 1.896220 AATCCACATGACACGCTTGT 58.104 45.000 0.00 0.00 39.32 3.16
2401 3702 2.995466 AAATCCACATGACACGCTTG 57.005 45.000 0.00 0.00 0.00 4.01
2423 3724 9.088987 AGTCCAATCAGCCTTTCTTTATAAAAA 57.911 29.630 0.00 0.00 0.00 1.94
2424 3725 8.650143 AGTCCAATCAGCCTTTCTTTATAAAA 57.350 30.769 0.00 0.00 0.00 1.52
2425 3726 8.109634 AGAGTCCAATCAGCCTTTCTTTATAAA 58.890 33.333 0.00 0.00 0.00 1.40
2426 3727 7.633789 AGAGTCCAATCAGCCTTTCTTTATAA 58.366 34.615 0.00 0.00 0.00 0.98
2427 3728 7.126421 AGAGAGTCCAATCAGCCTTTCTTTATA 59.874 37.037 0.00 0.00 0.00 0.98
2428 3729 6.069731 AGAGAGTCCAATCAGCCTTTCTTTAT 60.070 38.462 0.00 0.00 0.00 1.40
2429 3730 5.249393 AGAGAGTCCAATCAGCCTTTCTTTA 59.751 40.000 0.00 0.00 0.00 1.85
2430 3731 4.042684 AGAGAGTCCAATCAGCCTTTCTTT 59.957 41.667 0.00 0.00 0.00 2.52
2431 3732 3.586618 AGAGAGTCCAATCAGCCTTTCTT 59.413 43.478 0.00 0.00 0.00 2.52
2432 3733 3.180507 AGAGAGTCCAATCAGCCTTTCT 58.819 45.455 0.00 0.00 0.00 2.52
2433 3734 3.625649 AGAGAGTCCAATCAGCCTTTC 57.374 47.619 0.00 0.00 0.00 2.62
2434 3735 3.308046 GGAAGAGAGTCCAATCAGCCTTT 60.308 47.826 0.00 0.00 37.65 3.11
2435 3736 2.238395 GGAAGAGAGTCCAATCAGCCTT 59.762 50.000 0.00 0.00 37.65 4.35
2436 3737 1.836802 GGAAGAGAGTCCAATCAGCCT 59.163 52.381 0.00 0.00 37.65 4.58
2437 3738 1.472376 CGGAAGAGAGTCCAATCAGCC 60.472 57.143 0.00 0.00 37.56 4.85
2438 3739 1.205893 ACGGAAGAGAGTCCAATCAGC 59.794 52.381 0.00 0.00 37.56 4.26
2439 3740 3.601443 AACGGAAGAGAGTCCAATCAG 57.399 47.619 0.00 0.00 37.56 2.90
2440 3741 4.351874 AAAACGGAAGAGAGTCCAATCA 57.648 40.909 0.00 0.00 37.56 2.57
2441 3742 4.998033 AGAAAAACGGAAGAGAGTCCAATC 59.002 41.667 0.00 0.00 37.56 2.67
2442 3743 4.974399 AGAAAAACGGAAGAGAGTCCAAT 58.026 39.130 0.00 0.00 37.56 3.16
2443 3744 4.417426 AGAAAAACGGAAGAGAGTCCAA 57.583 40.909 0.00 0.00 37.56 3.53
2444 3745 4.417426 AAGAAAAACGGAAGAGAGTCCA 57.583 40.909 0.00 0.00 37.56 4.02
2445 3746 4.814771 TGAAAGAAAAACGGAAGAGAGTCC 59.185 41.667 0.00 0.00 0.00 3.85
2446 3747 5.986004 TGAAAGAAAAACGGAAGAGAGTC 57.014 39.130 0.00 0.00 0.00 3.36
2447 3748 6.055588 TCATGAAAGAAAAACGGAAGAGAGT 58.944 36.000 0.00 0.00 0.00 3.24
2448 3749 6.545504 TCATGAAAGAAAAACGGAAGAGAG 57.454 37.500 0.00 0.00 0.00 3.20
2449 3750 6.017109 CCTTCATGAAAGAAAAACGGAAGAGA 60.017 38.462 9.88 0.00 37.12 3.10
2450 3751 6.145535 CCTTCATGAAAGAAAAACGGAAGAG 58.854 40.000 9.88 0.00 37.12 2.85
2451 3752 5.592688 ACCTTCATGAAAGAAAAACGGAAGA 59.407 36.000 11.05 0.00 37.12 2.87
2452 3753 5.687285 CACCTTCATGAAAGAAAAACGGAAG 59.313 40.000 11.05 0.00 37.12 3.46
2453 3754 5.451242 CCACCTTCATGAAAGAAAAACGGAA 60.451 40.000 11.05 0.00 37.12 4.30
2454 3755 4.037446 CCACCTTCATGAAAGAAAAACGGA 59.963 41.667 11.05 0.00 37.12 4.69
2455 3756 4.037446 TCCACCTTCATGAAAGAAAAACGG 59.963 41.667 11.05 7.68 37.12 4.44
2456 3757 4.976116 GTCCACCTTCATGAAAGAAAAACG 59.024 41.667 11.05 0.00 37.12 3.60
2457 3758 6.149129 AGTCCACCTTCATGAAAGAAAAAC 57.851 37.500 11.05 5.04 37.12 2.43
2458 3759 6.406849 CCAAGTCCACCTTCATGAAAGAAAAA 60.407 38.462 11.05 0.00 37.12 1.94
2459 3760 5.068987 CCAAGTCCACCTTCATGAAAGAAAA 59.931 40.000 11.05 0.00 37.12 2.29
2460 3761 4.584325 CCAAGTCCACCTTCATGAAAGAAA 59.416 41.667 11.05 0.00 37.12 2.52
2461 3762 4.141274 TCCAAGTCCACCTTCATGAAAGAA 60.141 41.667 11.05 0.00 37.12 2.52
2462 3763 3.394274 TCCAAGTCCACCTTCATGAAAGA 59.606 43.478 11.05 2.49 37.12 2.52
2463 3764 3.503748 GTCCAAGTCCACCTTCATGAAAG 59.496 47.826 9.88 6.02 34.52 2.62
2464 3765 3.486383 GTCCAAGTCCACCTTCATGAAA 58.514 45.455 9.88 0.00 0.00 2.69
2465 3766 2.224769 GGTCCAAGTCCACCTTCATGAA 60.225 50.000 8.12 8.12 0.00 2.57
2466 3767 1.351017 GGTCCAAGTCCACCTTCATGA 59.649 52.381 0.00 0.00 0.00 3.07
2467 3768 1.352352 AGGTCCAAGTCCACCTTCATG 59.648 52.381 0.00 0.00 40.35 3.07
2468 3769 1.747444 AGGTCCAAGTCCACCTTCAT 58.253 50.000 0.00 0.00 40.35 2.57
2469 3770 3.257627 AGGTCCAAGTCCACCTTCA 57.742 52.632 0.00 0.00 40.35 3.02
2472 3773 0.401395 TCCAAGGTCCAAGTCCACCT 60.401 55.000 0.00 0.00 45.59 4.00
2473 3774 0.476771 TTCCAAGGTCCAAGTCCACC 59.523 55.000 0.00 0.00 0.00 4.61
2474 3775 1.954382 GTTTCCAAGGTCCAAGTCCAC 59.046 52.381 0.00 0.00 0.00 4.02
2475 3776 1.850345 AGTTTCCAAGGTCCAAGTCCA 59.150 47.619 0.00 0.00 0.00 4.02
2554 3855 6.803642 ACGAATCCAGTTAGTTACCTGATAC 58.196 40.000 0.00 0.00 0.00 2.24
2607 3910 6.360681 CCAGTTTTTCTTTTGACTTGATAGCG 59.639 38.462 0.00 0.00 0.00 4.26
2675 3983 4.260334 GGTTTGTTCATGCAAAAGTTGAGC 60.260 41.667 0.00 0.00 39.65 4.26
2690 3998 3.130340 TCCTGAAAGTTGCTGGTTTGTTC 59.870 43.478 6.66 0.00 0.00 3.18
2699 4007 4.226427 TGCAGATATCCTGAAAGTTGCT 57.774 40.909 0.00 0.00 45.78 3.91
2742 4050 3.490439 TCCATGCATGATATTCGGTGT 57.510 42.857 28.31 0.00 0.00 4.16
2779 4088 3.241552 ACGATGAAACGTAAAGCGAATCG 60.242 43.478 9.27 0.00 44.72 3.34
2873 4182 6.108687 CAGGTTGAATCTTACATCAGTAGCA 58.891 40.000 0.00 0.00 0.00 3.49
2883 4192 5.003804 ACCATGTGACAGGTTGAATCTTAC 58.996 41.667 0.00 0.00 33.39 2.34
3009 4318 0.178964 AGCCTGGCCTACTTTGCAAA 60.179 50.000 16.57 12.14 0.00 3.68
3021 4330 1.616159 TTGTGAAACCTAAGCCTGGC 58.384 50.000 11.65 11.65 34.36 4.85
3065 4376 1.392510 GCCGGCTAACTTAAACTGTCG 59.607 52.381 22.15 0.00 0.00 4.35
3100 4413 1.648504 GTTGTCATACCGGTGTAGGC 58.351 55.000 19.93 8.98 33.69 3.93
3625 4951 0.894141 AAGTATGCGGGCATTGCAAA 59.106 45.000 11.88 0.00 46.87 3.68
3636 4962 4.093514 CACATCTTTGCTTCAAGTATGCG 58.906 43.478 0.00 0.00 0.00 4.73
3637 4963 4.156556 TCCACATCTTTGCTTCAAGTATGC 59.843 41.667 0.00 0.00 0.00 3.14
3651 5004 3.074538 AGGCCAAACTACTTCCACATCTT 59.925 43.478 5.01 0.00 0.00 2.40
3884 5246 5.207768 GTGTCAACTTGAGCTAAATGTGTG 58.792 41.667 0.00 0.00 0.00 3.82
3897 5259 8.517878 AGAATAAGGAAATGATGTGTCAACTTG 58.482 33.333 0.00 0.00 38.01 3.16
4181 5549 1.300971 TGCATCTCAGCGGAAACTGC 61.301 55.000 7.64 7.64 37.59 4.40
4182 5550 1.159285 TTGCATCTCAGCGGAAACTG 58.841 50.000 0.00 0.00 39.12 3.16
4229 5601 7.136885 TCTTATATTTTGGGACAGAGGGAGTA 58.863 38.462 0.00 0.00 42.39 2.59
4230 5602 5.970640 TCTTATATTTTGGGACAGAGGGAGT 59.029 40.000 0.00 0.00 42.39 3.85
4231 5603 6.500589 TCTTATATTTTGGGACAGAGGGAG 57.499 41.667 0.00 0.00 42.39 4.30
4232 5604 6.631766 CGTTCTTATATTTTGGGACAGAGGGA 60.632 42.308 0.00 0.00 42.39 4.20
4233 5605 5.527582 CGTTCTTATATTTTGGGACAGAGGG 59.472 44.000 0.00 0.00 42.39 4.30
4234 5606 6.113411 ACGTTCTTATATTTTGGGACAGAGG 58.887 40.000 0.00 0.00 42.39 3.69
4235 5607 7.042335 AGACGTTCTTATATTTTGGGACAGAG 58.958 38.462 0.00 0.00 42.39 3.35
4236 5608 6.942976 AGACGTTCTTATATTTTGGGACAGA 58.057 36.000 0.00 0.00 42.39 3.41
4237 5609 7.611213 AAGACGTTCTTATATTTTGGGACAG 57.389 36.000 0.00 0.00 35.25 3.51
4238 5610 7.662258 TCAAAGACGTTCTTATATTTTGGGACA 59.338 33.333 0.00 0.00 35.27 4.02
4239 5611 7.961283 GTCAAAGACGTTCTTATATTTTGGGAC 59.039 37.037 0.00 0.00 35.27 4.46
4240 5612 7.662258 TGTCAAAGACGTTCTTATATTTTGGGA 59.338 33.333 0.00 0.00 35.27 4.37
4241 5613 7.749126 GTGTCAAAGACGTTCTTATATTTTGGG 59.251 37.037 0.00 0.00 35.27 4.12
4242 5614 8.504005 AGTGTCAAAGACGTTCTTATATTTTGG 58.496 33.333 0.00 0.00 35.27 3.28
4245 5617 9.924650 ACTAGTGTCAAAGACGTTCTTATATTT 57.075 29.630 0.00 0.00 35.27 1.40
4250 5622 9.224267 ACTATACTAGTGTCAAAGACGTTCTTA 57.776 33.333 5.39 0.00 34.92 2.10
4251 5623 8.108551 ACTATACTAGTGTCAAAGACGTTCTT 57.891 34.615 5.39 0.00 36.52 2.52
4252 5624 7.684937 ACTATACTAGTGTCAAAGACGTTCT 57.315 36.000 5.39 0.00 37.69 3.01
4280 5652 9.635404 TCCATCCCATAATATAAGAACGTTTTT 57.365 29.630 9.22 9.22 0.00 1.94
4281 5653 9.284968 CTCCATCCCATAATATAAGAACGTTTT 57.715 33.333 0.46 0.00 0.00 2.43
4282 5654 7.883311 CCTCCATCCCATAATATAAGAACGTTT 59.117 37.037 0.46 0.00 0.00 3.60
4283 5655 7.394816 CCTCCATCCCATAATATAAGAACGTT 58.605 38.462 0.00 0.00 0.00 3.99
4284 5656 6.070194 CCCTCCATCCCATAATATAAGAACGT 60.070 42.308 0.00 0.00 0.00 3.99
4285 5657 6.156256 TCCCTCCATCCCATAATATAAGAACG 59.844 42.308 0.00 0.00 0.00 3.95
4286 5658 7.182930 ACTCCCTCCATCCCATAATATAAGAAC 59.817 40.741 0.00 0.00 0.00 3.01
4287 5659 7.263901 ACTCCCTCCATCCCATAATATAAGAA 58.736 38.462 0.00 0.00 0.00 2.52
4288 5660 6.826727 ACTCCCTCCATCCCATAATATAAGA 58.173 40.000 0.00 0.00 0.00 2.10
4289 5661 8.805145 ATACTCCCTCCATCCCATAATATAAG 57.195 38.462 0.00 0.00 0.00 1.73
4293 5665 9.898576 CTATAATACTCCCTCCATCCCATAATA 57.101 37.037 0.00 0.00 0.00 0.98
4294 5666 8.362998 ACTATAATACTCCCTCCATCCCATAAT 58.637 37.037 0.00 0.00 0.00 1.28
4295 5667 7.729350 ACTATAATACTCCCTCCATCCCATAA 58.271 38.462 0.00 0.00 0.00 1.90
4296 5668 7.312162 ACTATAATACTCCCTCCATCCCATA 57.688 40.000 0.00 0.00 0.00 2.74
4297 5669 6.185677 ACTATAATACTCCCTCCATCCCAT 57.814 41.667 0.00 0.00 0.00 4.00
4298 5670 5.633473 ACTATAATACTCCCTCCATCCCA 57.367 43.478 0.00 0.00 0.00 4.37
4299 5671 8.445361 TTTTACTATAATACTCCCTCCATCCC 57.555 38.462 0.00 0.00 0.00 3.85
4303 5675 9.455144 TCCATTTTTACTATAATACTCCCTCCA 57.545 33.333 0.00 0.00 0.00 3.86
4363 5735 5.936956 AGACTGTTTTGAGAGATCCATCAAC 59.063 40.000 9.17 2.33 35.25 3.18
4399 5778 1.226030 CGACCTCACCAAACGAACCC 61.226 60.000 0.00 0.00 0.00 4.11
4404 5783 2.019951 CGACCGACCTCACCAAACG 61.020 63.158 0.00 0.00 0.00 3.60
4417 5796 4.270325 AGAAAAGAGAGAAAAACACGACCG 59.730 41.667 0.00 0.00 0.00 4.79
4486 5865 1.080638 TGAGGGGCCAAGGTTTACAT 58.919 50.000 4.39 0.00 0.00 2.29
4538 5917 3.133464 CACATCCGGGCGCATGTT 61.133 61.111 10.83 0.00 30.48 2.71
4733 6122 6.887002 AGGAATGAAAGAATGAAGGGTTAGAC 59.113 38.462 0.00 0.00 0.00 2.59
4923 6314 1.741706 CAACACTATGCCAGCAAGAGG 59.258 52.381 0.00 0.00 0.00 3.69
4952 6343 9.013229 ACAATACTTGAGATCTGCAACAAATAA 57.987 29.630 0.00 0.00 0.00 1.40
4972 6363 3.596214 ACGTCATGGAGGTTCACAATAC 58.404 45.455 0.00 0.00 0.00 1.89
5138 6531 5.402630 TCATGTGCCTTCTGGTCCTATATA 58.597 41.667 0.00 0.00 35.27 0.86
5139 6532 4.234550 TCATGTGCCTTCTGGTCCTATAT 58.765 43.478 0.00 0.00 35.27 0.86
5220 6613 8.289618 GTCACTATTGTTGCTTCAAACTATCAA 58.710 33.333 0.00 0.00 30.06 2.57
5228 6621 7.036996 TGAAATGTCACTATTGTTGCTTCAA 57.963 32.000 0.00 0.00 0.00 2.69
5234 6627 8.578308 AACACATTGAAATGTCACTATTGTTG 57.422 30.769 5.70 0.00 46.10 3.33
5241 6634 4.370917 GGCAAACACATTGAAATGTCACT 58.629 39.130 5.70 0.00 46.10 3.41
5262 6655 1.134220 ACACTGCATACATAACCGGGG 60.134 52.381 6.32 0.00 0.00 5.73
5263 6656 2.325583 ACACTGCATACATAACCGGG 57.674 50.000 6.32 0.00 0.00 5.73
5266 6659 2.752354 TGCCAACACTGCATACATAACC 59.248 45.455 0.00 0.00 32.85 2.85
5267 6660 4.433186 TTGCCAACACTGCATACATAAC 57.567 40.909 0.00 0.00 38.76 1.89
5269 6662 4.078537 ACTTTGCCAACACTGCATACATA 58.921 39.130 0.00 0.00 38.76 2.29
5294 6687 4.966965 TCAGCTAACTTAGGTTCTCGAG 57.033 45.455 5.93 5.93 36.92 4.04
5310 6703 1.677217 GCTCTTTCGGTCCATTCAGCT 60.677 52.381 0.00 0.00 0.00 4.24
5311 6704 0.729690 GCTCTTTCGGTCCATTCAGC 59.270 55.000 0.00 0.00 0.00 4.26
5395 6788 5.188434 ACATGATACCCATCACAACAGAAG 58.812 41.667 0.00 0.00 43.89 2.85
5512 6909 2.398588 AGATAAGAATCCGACAGGCCA 58.601 47.619 5.01 0.00 37.47 5.36
5578 7221 7.009357 GCAGTGTAGCTTAGTATGTTACTGTTC 59.991 40.741 0.00 1.92 39.81 3.18
5615 7284 7.458397 ACAAGATAAATCAGTGAACCCTACAA 58.542 34.615 0.00 0.00 0.00 2.41
5729 7398 2.165998 GACCTCTTTGGCTGCAGAATT 58.834 47.619 20.43 0.00 40.22 2.17
5784 7453 4.105697 AGTGGTAGGTTCATGGAGGAAAAA 59.894 41.667 0.00 0.00 0.00 1.94
5814 7483 0.313043 CACAAAGCAAGCACCTCCAG 59.687 55.000 0.00 0.00 0.00 3.86
5832 7501 0.253160 ATGGGCTTCAGGGGTCTACA 60.253 55.000 0.00 0.00 0.00 2.74
5865 7534 7.665559 TGTCAAATCTGCTAACCTTCAGTAATT 59.334 33.333 0.00 0.00 0.00 1.40
5867 7536 6.530120 TGTCAAATCTGCTAACCTTCAGTAA 58.470 36.000 0.00 0.00 0.00 2.24
5883 7552 5.412594 TGGCAGTAGTCAAGAATGTCAAATC 59.587 40.000 0.00 0.00 0.00 2.17
5889 7558 4.005650 CACATGGCAGTAGTCAAGAATGT 58.994 43.478 0.00 0.00 30.06 2.71
5968 7638 0.179020 CTCCAGGAACAAGCACACCA 60.179 55.000 0.00 0.00 0.00 4.17
6028 7698 4.462483 ACATTCTTTTCCCGTGCATATGTT 59.538 37.500 4.29 0.00 0.00 2.71
6043 7713 7.486407 AATGCCAAGATAAGGAACATTCTTT 57.514 32.000 0.00 0.00 0.00 2.52
6383 8054 2.625314 CGATCTAGGAAGATGACCAGCA 59.375 50.000 0.00 0.00 42.73 4.41
6525 8196 7.050377 AGTTCCATGTGTTTACCTCATATCTG 58.950 38.462 0.00 0.00 0.00 2.90
6755 8426 9.383519 CCAGTAGATGAAGTTTATTCTTAAGCA 57.616 33.333 0.00 0.00 0.00 3.91
6893 8564 8.988934 TGAACAAGTGTTGTATCAAGATTAGAC 58.011 33.333 0.42 0.00 44.59 2.59
6909 8580 8.517878 CCAAGATTAATCTCAATGAACAAGTGT 58.482 33.333 18.19 0.00 35.76 3.55
7031 8702 1.429463 GGTTTCGAACTGATGACGCT 58.571 50.000 0.00 0.00 0.00 5.07
7097 8768 3.423749 CGTTGGGGTAAGGTTTTATGGT 58.576 45.455 0.00 0.00 0.00 3.55
7126 8797 0.475906 AGCTGGTGAGTGCCTTCTTT 59.524 50.000 0.00 0.00 0.00 2.52
7739 9417 5.081032 AGTGGGTATATTAGGAGCTCAGTC 58.919 45.833 17.19 0.00 0.00 3.51
7772 9450 3.947834 CGGCTTGTAGGAATTTTGGAGAT 59.052 43.478 0.00 0.00 0.00 2.75
7890 9569 6.324819 CAAGATGCCTCGTTATGAAACAATT 58.675 36.000 0.00 0.00 35.16 2.32
7982 9661 5.290386 CGTATCATGGGGTTCTCTCTAAAC 58.710 45.833 0.00 0.00 0.00 2.01
8164 9843 4.831710 GGTATACTTTCTAGATGGGGACGT 59.168 45.833 2.25 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.