Multiple sequence alignment - TraesCS3D01G236700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G236700 chr3D 100.000 3344 0 0 1 3344 327522486 327519143 0.000000e+00 6176.0
1 TraesCS3D01G236700 chr3B 90.540 2928 101 64 414 3235 422309965 422312822 0.000000e+00 3711.0
2 TraesCS3D01G236700 chr3B 81.720 93 15 2 1 92 425751956 425751865 3.580000e-10 76.8
3 TraesCS3D01G236700 chr3A 93.890 2013 56 28 602 2577 441156211 441154229 0.000000e+00 2974.0
4 TraesCS3D01G236700 chr3A 93.852 244 10 2 350 589 441192125 441191883 2.450000e-96 363.0
5 TraesCS3D01G236700 chr3A 88.660 291 23 5 2982 3271 441153648 441153367 2.470000e-91 346.0
6 TraesCS3D01G236700 chr3A 82.989 435 6 17 2569 2965 441154206 441153802 6.920000e-87 331.0
7 TraesCS3D01G236700 chr5D 82.558 86 15 0 22 107 78793160 78793245 3.580000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G236700 chr3D 327519143 327522486 3343 True 6176 6176 100.000 1 3344 1 chr3D.!!$R1 3343
1 TraesCS3D01G236700 chr3B 422309965 422312822 2857 False 3711 3711 90.540 414 3235 1 chr3B.!!$F1 2821
2 TraesCS3D01G236700 chr3A 441153367 441156211 2844 True 1217 2974 88.513 602 3271 3 chr3A.!!$R2 2669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
172 173 0.031314 CAGATCGGCTACATCGCAGT 59.969 55.0 0.0 0.0 0.00 4.40 F
278 279 0.035343 GGTTGAGGCCCTTAGGTCAC 60.035 60.0 0.0 0.0 41.85 3.67 F
279 280 0.035343 GTTGAGGCCCTTAGGTCACC 60.035 60.0 0.0 0.0 41.85 4.02 F
1476 1506 0.101759 CATTTTCCTCGCCTGCCATG 59.898 55.0 0.0 0.0 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1153 1183 0.036952 CTTCATCACGCTCACCACCT 60.037 55.0 0.00 0.00 0.00 4.00 R
1474 1504 0.249784 TGCGCAAACATGGCAAACAT 60.250 45.0 8.16 0.00 41.57 2.71 R
2052 2106 0.389948 CCGTGTAGAACTGCAGGTCC 60.390 60.0 28.05 14.36 30.87 4.46 R
3287 3605 0.247736 CGGGTCAGAGGAGGACAAAG 59.752 60.0 0.00 0.00 37.00 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.782443 CCCGGTAGCCCACCTGTC 61.782 72.222 0.00 0.00 46.19 3.51
20 21 2.683933 CCGGTAGCCCACCTGTCT 60.684 66.667 0.00 0.00 46.19 3.41
21 22 2.722201 CCGGTAGCCCACCTGTCTC 61.722 68.421 0.00 0.00 46.19 3.36
22 23 2.893398 GGTAGCCCACCTGTCTCG 59.107 66.667 0.00 0.00 44.79 4.04
23 24 2.184579 GTAGCCCACCTGTCTCGC 59.815 66.667 0.00 0.00 0.00 5.03
24 25 3.075005 TAGCCCACCTGTCTCGCC 61.075 66.667 0.00 0.00 0.00 5.54
40 41 4.758251 CCGCGCCACATGACAGGA 62.758 66.667 0.00 0.00 0.00 3.86
41 42 2.741985 CGCGCCACATGACAGGAA 60.742 61.111 0.00 0.00 0.00 3.36
42 43 2.743752 CGCGCCACATGACAGGAAG 61.744 63.158 0.00 0.00 0.00 3.46
43 44 2.401766 GCGCCACATGACAGGAAGG 61.402 63.158 0.00 0.00 0.00 3.46
44 45 2.401766 CGCCACATGACAGGAAGGC 61.402 63.158 15.08 15.08 38.73 4.35
45 46 2.048603 GCCACATGACAGGAAGGCC 61.049 63.158 14.43 0.00 36.17 5.19
46 47 1.379916 CCACATGACAGGAAGGCCA 59.620 57.895 5.01 0.00 36.29 5.36
47 48 0.033796 CCACATGACAGGAAGGCCAT 60.034 55.000 5.01 0.00 36.29 4.40
48 49 1.386533 CACATGACAGGAAGGCCATC 58.613 55.000 5.01 0.92 36.29 3.51
49 50 0.257039 ACATGACAGGAAGGCCATCC 59.743 55.000 19.73 19.73 39.96 3.51
55 56 3.581372 GGAAGGCCATCCTAGGGG 58.419 66.667 20.04 4.10 43.40 4.79
62 63 4.256180 CATCCTAGGGGCCGCCAC 62.256 72.222 17.56 7.93 0.00 5.01
74 75 4.856801 CGCCACCCCGGATCCAAG 62.857 72.222 13.41 1.74 36.56 3.61
75 76 4.506255 GCCACCCCGGATCCAAGG 62.506 72.222 13.41 13.91 36.56 3.61
76 77 4.506255 CCACCCCGGATCCAAGGC 62.506 72.222 13.41 0.00 36.56 4.35
77 78 4.506255 CACCCCGGATCCAAGGCC 62.506 72.222 13.41 0.00 0.00 5.19
80 81 2.447765 CCCGGATCCAAGGCCCTA 60.448 66.667 13.41 0.00 0.00 3.53
81 82 2.819284 CCCGGATCCAAGGCCCTAC 61.819 68.421 13.41 0.00 0.00 3.18
82 83 2.421739 CGGATCCAAGGCCCTACG 59.578 66.667 13.41 0.00 0.00 3.51
83 84 2.111251 GGATCCAAGGCCCTACGC 59.889 66.667 6.95 0.00 0.00 4.42
92 93 2.595655 GCCCTACGCCCCAAATCT 59.404 61.111 0.00 0.00 0.00 2.40
93 94 1.823899 GCCCTACGCCCCAAATCTG 60.824 63.158 0.00 0.00 0.00 2.90
94 95 1.152963 CCCTACGCCCCAAATCTGG 60.153 63.158 0.00 0.00 43.10 3.86
95 96 1.607612 CCTACGCCCCAAATCTGGT 59.392 57.895 0.00 0.00 41.72 4.00
96 97 0.748005 CCTACGCCCCAAATCTGGTG 60.748 60.000 0.00 0.00 41.72 4.17
97 98 0.748005 CTACGCCCCAAATCTGGTGG 60.748 60.000 0.00 0.00 41.72 4.61
98 99 1.202099 TACGCCCCAAATCTGGTGGA 61.202 55.000 0.00 0.00 41.72 4.02
99 100 1.076777 CGCCCCAAATCTGGTGGAT 60.077 57.895 0.00 0.00 41.72 3.41
100 101 1.103398 CGCCCCAAATCTGGTGGATC 61.103 60.000 0.00 0.00 41.72 3.36
101 102 0.033208 GCCCCAAATCTGGTGGATCA 60.033 55.000 0.00 0.00 41.72 2.92
102 103 1.619432 GCCCCAAATCTGGTGGATCAA 60.619 52.381 0.00 0.00 41.72 2.57
103 104 2.956385 GCCCCAAATCTGGTGGATCAAT 60.956 50.000 0.00 0.00 41.72 2.57
104 105 2.696707 CCCCAAATCTGGTGGATCAATG 59.303 50.000 0.00 0.00 41.72 2.82
105 106 2.101917 CCCAAATCTGGTGGATCAATGC 59.898 50.000 0.00 0.00 41.72 3.56
106 107 2.101917 CCAAATCTGGTGGATCAATGCC 59.898 50.000 0.00 0.00 38.54 4.40
107 108 1.683943 AATCTGGTGGATCAATGCCG 58.316 50.000 0.00 0.00 32.76 5.69
108 109 0.179009 ATCTGGTGGATCAATGCCGG 60.179 55.000 0.00 0.00 0.00 6.13
109 110 2.440065 TGGTGGATCAATGCCGGC 60.440 61.111 22.73 22.73 0.00 6.13
110 111 3.219198 GGTGGATCAATGCCGGCC 61.219 66.667 26.77 6.80 0.00 6.13
111 112 3.585990 GTGGATCAATGCCGGCCG 61.586 66.667 26.77 21.04 0.00 6.13
112 113 3.791586 TGGATCAATGCCGGCCGA 61.792 61.111 30.73 18.48 0.00 5.54
113 114 2.974698 GGATCAATGCCGGCCGAG 60.975 66.667 30.73 18.40 0.00 4.63
114 115 3.654020 GATCAATGCCGGCCGAGC 61.654 66.667 30.73 27.71 0.00 5.03
133 134 2.740055 GTCACTGACGCTGGCTGG 60.740 66.667 0.00 0.00 0.00 4.85
134 135 4.687215 TCACTGACGCTGGCTGGC 62.687 66.667 0.00 0.00 0.00 4.85
159 160 4.873129 CCGCCGTGGACCAGATCG 62.873 72.222 0.00 0.00 42.00 3.69
160 161 4.873129 CGCCGTGGACCAGATCGG 62.873 72.222 15.84 15.84 44.86 4.18
162 163 3.461773 CCGTGGACCAGATCGGCT 61.462 66.667 8.90 0.00 39.03 5.52
163 164 2.125326 CCGTGGACCAGATCGGCTA 61.125 63.158 8.90 0.00 39.03 3.93
164 165 1.065928 CGTGGACCAGATCGGCTAC 59.934 63.158 0.00 4.74 39.03 3.58
165 166 1.663379 CGTGGACCAGATCGGCTACA 61.663 60.000 0.00 0.00 39.03 2.74
166 167 0.753262 GTGGACCAGATCGGCTACAT 59.247 55.000 0.00 0.00 39.03 2.29
167 168 1.040646 TGGACCAGATCGGCTACATC 58.959 55.000 0.00 0.00 39.03 3.06
168 169 0.039074 GGACCAGATCGGCTACATCG 60.039 60.000 3.85 0.00 39.03 3.84
169 170 0.664767 GACCAGATCGGCTACATCGC 60.665 60.000 3.85 0.00 39.03 4.58
170 171 1.363807 CCAGATCGGCTACATCGCA 59.636 57.895 0.00 0.00 0.00 5.10
171 172 0.665670 CCAGATCGGCTACATCGCAG 60.666 60.000 0.00 0.00 0.00 5.18
172 173 0.031314 CAGATCGGCTACATCGCAGT 59.969 55.000 0.00 0.00 0.00 4.40
173 174 0.747255 AGATCGGCTACATCGCAGTT 59.253 50.000 0.00 0.00 0.00 3.16
174 175 0.855349 GATCGGCTACATCGCAGTTG 59.145 55.000 0.00 0.00 0.00 3.16
175 176 0.459899 ATCGGCTACATCGCAGTTGA 59.540 50.000 0.00 0.00 0.00 3.18
176 177 0.459899 TCGGCTACATCGCAGTTGAT 59.540 50.000 0.00 0.00 0.00 2.57
177 178 0.855349 CGGCTACATCGCAGTTGATC 59.145 55.000 0.00 0.00 0.00 2.92
178 179 0.855349 GGCTACATCGCAGTTGATCG 59.145 55.000 0.00 0.00 0.00 3.69
179 180 0.855349 GCTACATCGCAGTTGATCGG 59.145 55.000 0.00 0.00 0.00 4.18
180 181 1.491670 CTACATCGCAGTTGATCGGG 58.508 55.000 0.00 0.00 0.00 5.14
181 182 0.104120 TACATCGCAGTTGATCGGGG 59.896 55.000 0.00 0.00 0.00 5.73
182 183 2.203070 ATCGCAGTTGATCGGGGC 60.203 61.111 0.00 0.00 0.00 5.80
183 184 3.757248 ATCGCAGTTGATCGGGGCC 62.757 63.158 0.00 0.00 0.00 5.80
186 187 4.776322 CAGTTGATCGGGGCCGCA 62.776 66.667 21.08 7.50 39.59 5.69
187 188 4.778143 AGTTGATCGGGGCCGCAC 62.778 66.667 21.08 9.84 39.59 5.34
197 198 4.021925 GGCCGCACCCTCAAGTCT 62.022 66.667 0.00 0.00 0.00 3.24
198 199 2.743928 GCCGCACCCTCAAGTCTG 60.744 66.667 0.00 0.00 0.00 3.51
199 200 2.046892 CCGCACCCTCAAGTCTGG 60.047 66.667 0.00 0.00 0.00 3.86
204 205 4.785453 CCCTCAAGTCTGGGCGCC 62.785 72.222 21.18 21.18 36.61 6.53
205 206 4.785453 CCTCAAGTCTGGGCGCCC 62.785 72.222 39.40 39.40 0.00 6.13
206 207 4.785453 CTCAAGTCTGGGCGCCCC 62.785 72.222 41.75 26.88 45.71 5.80
219 220 4.796495 GCCCCGTGCCACCCTAAG 62.796 72.222 0.00 0.00 0.00 2.18
220 221 3.006728 CCCCGTGCCACCCTAAGA 61.007 66.667 0.00 0.00 0.00 2.10
221 222 2.584608 CCCGTGCCACCCTAAGAG 59.415 66.667 0.00 0.00 0.00 2.85
222 223 2.125106 CCGTGCCACCCTAAGAGC 60.125 66.667 0.00 0.00 0.00 4.09
223 224 2.662596 CGTGCCACCCTAAGAGCA 59.337 61.111 0.00 0.00 0.00 4.26
224 225 1.448540 CGTGCCACCCTAAGAGCAG 60.449 63.158 0.00 0.00 35.56 4.24
225 226 1.888436 CGTGCCACCCTAAGAGCAGA 61.888 60.000 0.00 0.00 35.56 4.26
226 227 0.107945 GTGCCACCCTAAGAGCAGAG 60.108 60.000 0.00 0.00 35.56 3.35
227 228 1.267574 TGCCACCCTAAGAGCAGAGG 61.268 60.000 0.00 0.00 0.00 3.69
232 233 2.833244 CCTAAGAGCAGAGGGAGGG 58.167 63.158 0.00 0.00 0.00 4.30
233 234 0.263172 CCTAAGAGCAGAGGGAGGGA 59.737 60.000 0.00 0.00 0.00 4.20
234 235 1.703411 CTAAGAGCAGAGGGAGGGAG 58.297 60.000 0.00 0.00 0.00 4.30
235 236 0.397816 TAAGAGCAGAGGGAGGGAGC 60.398 60.000 0.00 0.00 0.00 4.70
236 237 3.535962 GAGCAGAGGGAGGGAGCG 61.536 72.222 0.00 0.00 0.00 5.03
237 238 4.390556 AGCAGAGGGAGGGAGCGT 62.391 66.667 0.00 0.00 0.00 5.07
238 239 3.394836 GCAGAGGGAGGGAGCGTT 61.395 66.667 0.00 0.00 0.00 4.84
239 240 2.581354 CAGAGGGAGGGAGCGTTG 59.419 66.667 0.00 0.00 0.00 4.10
240 241 3.394836 AGAGGGAGGGAGCGTTGC 61.395 66.667 0.00 0.00 0.00 4.17
241 242 4.475135 GAGGGAGGGAGCGTTGCC 62.475 72.222 0.20 0.20 34.44 4.52
249 250 3.490890 GAGCGTTGCCTCCATCAC 58.509 61.111 0.00 0.00 0.00 3.06
250 251 2.045926 AGCGTTGCCTCCATCACC 60.046 61.111 0.00 0.00 0.00 4.02
251 252 3.499737 GCGTTGCCTCCATCACCG 61.500 66.667 0.00 0.00 0.00 4.94
252 253 3.499737 CGTTGCCTCCATCACCGC 61.500 66.667 0.00 0.00 0.00 5.68
253 254 2.045926 GTTGCCTCCATCACCGCT 60.046 61.111 0.00 0.00 0.00 5.52
254 255 2.046023 TTGCCTCCATCACCGCTG 60.046 61.111 0.00 0.00 0.00 5.18
255 256 4.783621 TGCCTCCATCACCGCTGC 62.784 66.667 0.00 0.00 0.00 5.25
256 257 4.479993 GCCTCCATCACCGCTGCT 62.480 66.667 0.00 0.00 0.00 4.24
257 258 3.094062 GCCTCCATCACCGCTGCTA 62.094 63.158 0.00 0.00 0.00 3.49
258 259 1.068753 CCTCCATCACCGCTGCTAG 59.931 63.158 0.00 0.00 0.00 3.42
259 260 1.068753 CTCCATCACCGCTGCTAGG 59.931 63.158 0.00 0.00 0.00 3.02
260 261 2.109799 CCATCACCGCTGCTAGGG 59.890 66.667 0.00 0.00 0.00 3.53
261 262 2.735772 CCATCACCGCTGCTAGGGT 61.736 63.158 0.00 0.00 36.87 4.34
262 263 1.221840 CATCACCGCTGCTAGGGTT 59.778 57.895 0.00 0.00 33.23 4.11
263 264 1.091771 CATCACCGCTGCTAGGGTTG 61.092 60.000 0.00 0.00 33.23 3.77
264 265 1.264749 ATCACCGCTGCTAGGGTTGA 61.265 55.000 0.00 3.84 33.23 3.18
265 266 1.448540 CACCGCTGCTAGGGTTGAG 60.449 63.158 0.00 0.00 33.23 3.02
266 267 2.187946 CCGCTGCTAGGGTTGAGG 59.812 66.667 0.00 0.00 0.00 3.86
267 268 2.512515 CGCTGCTAGGGTTGAGGC 60.513 66.667 0.00 0.00 0.00 4.70
268 269 2.124529 GCTGCTAGGGTTGAGGCC 60.125 66.667 0.00 0.00 0.00 5.19
275 276 3.836617 GGGTTGAGGCCCTTAGGT 58.163 61.111 0.00 0.00 45.22 3.08
276 277 1.608154 GGGTTGAGGCCCTTAGGTC 59.392 63.158 0.00 0.00 45.22 3.85
277 278 1.205460 GGGTTGAGGCCCTTAGGTCA 61.205 60.000 0.00 0.00 45.22 4.02
278 279 0.035343 GGTTGAGGCCCTTAGGTCAC 60.035 60.000 0.00 0.00 41.85 3.67
279 280 0.035343 GTTGAGGCCCTTAGGTCACC 60.035 60.000 0.00 0.00 41.85 4.02
280 281 1.205460 TTGAGGCCCTTAGGTCACCC 61.205 60.000 0.00 0.00 41.85 4.61
281 282 1.615424 GAGGCCCTTAGGTCACCCA 60.615 63.158 0.00 0.00 41.85 4.51
282 283 1.911702 GAGGCCCTTAGGTCACCCAC 61.912 65.000 0.00 0.00 41.85 4.61
283 284 2.267961 GCCCTTAGGTCACCCACG 59.732 66.667 0.00 0.00 34.57 4.94
284 285 2.987125 CCCTTAGGTCACCCACGG 59.013 66.667 0.00 0.00 0.00 4.94
285 286 2.666098 CCCTTAGGTCACCCACGGG 61.666 68.421 0.00 0.00 42.03 5.28
302 303 4.928520 GGGGATGGGGGAGGGGAG 62.929 77.778 0.00 0.00 0.00 4.30
303 304 4.928520 GGGATGGGGGAGGGGAGG 62.929 77.778 0.00 0.00 0.00 4.30
304 305 4.928520 GGATGGGGGAGGGGAGGG 62.929 77.778 0.00 0.00 0.00 4.30
305 306 3.791076 GATGGGGGAGGGGAGGGA 61.791 72.222 0.00 0.00 0.00 4.20
306 307 3.795924 ATGGGGGAGGGGAGGGAG 61.796 72.222 0.00 0.00 0.00 4.30
310 311 3.707189 GGGAGGGGAGGGAGGGAA 61.707 72.222 0.00 0.00 0.00 3.97
311 312 2.712746 GGAGGGGAGGGAGGGAAT 59.287 66.667 0.00 0.00 0.00 3.01
312 313 1.772156 GGAGGGGAGGGAGGGAATG 60.772 68.421 0.00 0.00 0.00 2.67
313 314 1.772156 GAGGGGAGGGAGGGAATGG 60.772 68.421 0.00 0.00 0.00 3.16
314 315 2.778717 GGGGAGGGAGGGAATGGG 60.779 72.222 0.00 0.00 0.00 4.00
315 316 2.376842 GGGAGGGAGGGAATGGGA 59.623 66.667 0.00 0.00 0.00 4.37
316 317 1.772156 GGGAGGGAGGGAATGGGAG 60.772 68.421 0.00 0.00 0.00 4.30
317 318 1.772156 GGAGGGAGGGAATGGGAGG 60.772 68.421 0.00 0.00 0.00 4.30
318 319 1.772156 GAGGGAGGGAATGGGAGGG 60.772 68.421 0.00 0.00 0.00 4.30
319 320 2.778717 GGGAGGGAATGGGAGGGG 60.779 72.222 0.00 0.00 0.00 4.79
320 321 2.376842 GGAGGGAATGGGAGGGGA 59.623 66.667 0.00 0.00 0.00 4.81
321 322 1.772156 GGAGGGAATGGGAGGGGAG 60.772 68.421 0.00 0.00 0.00 4.30
322 323 1.772156 GAGGGAATGGGAGGGGAGG 60.772 68.421 0.00 0.00 0.00 4.30
323 324 2.778717 GGGAATGGGAGGGGAGGG 60.779 72.222 0.00 0.00 0.00 4.30
324 325 3.502875 GGAATGGGAGGGGAGGGC 61.503 72.222 0.00 0.00 0.00 5.19
325 326 3.878667 GAATGGGAGGGGAGGGCG 61.879 72.222 0.00 0.00 0.00 6.13
344 345 4.208686 CCGCGACAGAGGGCCTAC 62.209 72.222 5.73 0.00 33.34 3.18
345 346 4.208686 CGCGACAGAGGGCCTACC 62.209 72.222 5.73 0.00 40.67 3.18
346 347 3.075005 GCGACAGAGGGCCTACCA 61.075 66.667 5.73 0.00 43.89 3.25
347 348 2.656069 GCGACAGAGGGCCTACCAA 61.656 63.158 5.73 0.00 43.89 3.67
348 349 1.980052 CGACAGAGGGCCTACCAAA 59.020 57.895 5.73 0.00 43.89 3.28
349 350 0.391263 CGACAGAGGGCCTACCAAAC 60.391 60.000 5.73 0.00 43.89 2.93
350 351 0.391263 GACAGAGGGCCTACCAAACG 60.391 60.000 5.73 0.00 43.89 3.60
351 352 0.834687 ACAGAGGGCCTACCAAACGA 60.835 55.000 5.73 0.00 43.89 3.85
352 353 0.108138 CAGAGGGCCTACCAAACGAG 60.108 60.000 5.73 0.00 43.89 4.18
353 354 0.544595 AGAGGGCCTACCAAACGAGT 60.545 55.000 5.73 0.00 43.89 4.18
354 355 1.188863 GAGGGCCTACCAAACGAGTA 58.811 55.000 5.73 0.00 43.89 2.59
355 356 0.900421 AGGGCCTACCAAACGAGTAC 59.100 55.000 2.82 0.00 43.89 2.73
356 357 0.459063 GGGCCTACCAAACGAGTACG 60.459 60.000 0.84 0.00 41.68 3.67
357 358 0.244721 GGCCTACCAAACGAGTACGT 59.755 55.000 0.00 0.00 45.28 3.57
358 359 1.472480 GGCCTACCAAACGAGTACGTA 59.528 52.381 0.00 0.00 43.66 3.57
359 360 2.478539 GGCCTACCAAACGAGTACGTAG 60.479 54.545 0.00 0.00 43.66 3.51
360 361 4.729277 GGCCTACCAAACGAGTACGTAGA 61.729 52.174 0.00 0.00 43.66 2.59
361 362 6.494669 GGCCTACCAAACGAGTACGTAGAG 62.495 54.167 0.00 0.00 43.66 2.43
373 374 7.048000 CGAGTACGTAGAGTAGGATATTGAC 57.952 44.000 0.00 0.00 35.72 3.18
374 375 6.090628 CGAGTACGTAGAGTAGGATATTGACC 59.909 46.154 0.00 0.00 35.72 4.02
375 376 6.835174 AGTACGTAGAGTAGGATATTGACCA 58.165 40.000 0.00 0.00 35.72 4.02
376 377 7.285566 AGTACGTAGAGTAGGATATTGACCAA 58.714 38.462 0.00 0.00 35.72 3.67
377 378 6.636562 ACGTAGAGTAGGATATTGACCAAG 57.363 41.667 0.00 0.00 0.00 3.61
378 379 6.127793 ACGTAGAGTAGGATATTGACCAAGT 58.872 40.000 0.00 0.00 0.00 3.16
379 380 6.262720 ACGTAGAGTAGGATATTGACCAAGTC 59.737 42.308 0.00 0.00 0.00 3.01
380 381 5.776173 AGAGTAGGATATTGACCAAGTCG 57.224 43.478 0.00 0.00 34.95 4.18
381 382 4.038162 AGAGTAGGATATTGACCAAGTCGC 59.962 45.833 0.00 0.00 34.95 5.19
382 383 3.961408 AGTAGGATATTGACCAAGTCGCT 59.039 43.478 0.00 0.00 34.95 4.93
383 384 3.914426 AGGATATTGACCAAGTCGCTT 57.086 42.857 0.00 0.00 34.95 4.68
384 385 3.798202 AGGATATTGACCAAGTCGCTTC 58.202 45.455 0.00 0.00 34.95 3.86
385 386 3.197766 AGGATATTGACCAAGTCGCTTCA 59.802 43.478 0.00 0.00 34.95 3.02
386 387 3.557595 GGATATTGACCAAGTCGCTTCAG 59.442 47.826 0.00 0.00 34.95 3.02
387 388 2.839486 ATTGACCAAGTCGCTTCAGA 57.161 45.000 0.00 0.00 34.95 3.27
388 389 2.839486 TTGACCAAGTCGCTTCAGAT 57.161 45.000 0.00 0.00 34.95 2.90
389 390 2.370281 TGACCAAGTCGCTTCAGATC 57.630 50.000 0.00 0.00 34.95 2.75
390 391 1.895798 TGACCAAGTCGCTTCAGATCT 59.104 47.619 0.00 0.00 34.95 2.75
391 392 2.266554 GACCAAGTCGCTTCAGATCTG 58.733 52.381 17.07 17.07 0.00 2.90
392 393 1.005340 CCAAGTCGCTTCAGATCTGC 58.995 55.000 18.36 5.62 0.00 4.26
393 394 1.673923 CCAAGTCGCTTCAGATCTGCA 60.674 52.381 18.36 6.34 0.00 4.41
394 395 1.659601 CAAGTCGCTTCAGATCTGCAG 59.340 52.381 18.36 17.63 0.00 4.41
395 396 1.180907 AGTCGCTTCAGATCTGCAGA 58.819 50.000 24.25 20.79 0.00 4.26
396 397 1.134753 AGTCGCTTCAGATCTGCAGAG 59.865 52.381 24.25 20.83 0.00 3.35
397 398 0.459078 TCGCTTCAGATCTGCAGAGG 59.541 55.000 24.25 15.03 0.00 3.69
398 399 1.152989 CGCTTCAGATCTGCAGAGGC 61.153 60.000 24.25 15.11 41.68 4.70
399 400 0.814812 GCTTCAGATCTGCAGAGGCC 60.815 60.000 24.25 13.31 40.13 5.19
400 401 0.179051 CTTCAGATCTGCAGAGGCCC 60.179 60.000 22.96 10.85 40.13 5.80
401 402 0.619832 TTCAGATCTGCAGAGGCCCT 60.620 55.000 22.96 12.89 40.13 5.19
402 403 1.146485 CAGATCTGCAGAGGCCCTG 59.854 63.158 22.96 19.75 45.67 4.45
403 404 2.071262 AGATCTGCAGAGGCCCTGG 61.071 63.158 22.96 7.10 43.13 4.45
404 405 2.041762 ATCTGCAGAGGCCCTGGA 59.958 61.111 22.96 16.31 43.13 3.86
447 448 2.058001 ACGAGCATGACCCGATCCA 61.058 57.895 0.00 0.00 0.00 3.41
448 449 1.368950 CGAGCATGACCCGATCCAT 59.631 57.895 0.00 0.00 0.00 3.41
449 450 0.668706 CGAGCATGACCCGATCCATC 60.669 60.000 0.00 0.00 0.00 3.51
450 451 0.321122 GAGCATGACCCGATCCATCC 60.321 60.000 0.00 0.00 0.00 3.51
472 473 0.392461 CGTCCATGACATCCCGGTTT 60.392 55.000 0.00 0.00 32.09 3.27
532 533 1.076533 GTCATGCGAGTACGTGGTGG 61.077 60.000 0.00 0.00 41.98 4.61
555 556 4.214310 CCATGGTGGGTAGCATAATCAAA 58.786 43.478 2.57 0.00 42.79 2.69
568 569 4.448891 CATAATCAAATAGTCGCACGCAG 58.551 43.478 0.00 0.00 0.00 5.18
741 748 4.148825 ATCTCCTCGCACCCGCAC 62.149 66.667 0.00 0.00 38.40 5.34
750 757 2.903357 CACCCGCACAGATAGCCT 59.097 61.111 0.00 0.00 0.00 4.58
802 811 0.387750 CGGCAAAGGCAAGAAAGAGC 60.388 55.000 0.00 0.00 43.71 4.09
865 881 4.151512 CCTCTTGCTTCTTTCTTCTTCGTC 59.848 45.833 0.00 0.00 0.00 4.20
876 903 4.698583 TCTTCTTCGTCTAGTACCAAGC 57.301 45.455 0.00 0.00 0.00 4.01
877 904 4.333690 TCTTCTTCGTCTAGTACCAAGCT 58.666 43.478 0.00 0.00 0.00 3.74
878 905 4.395542 TCTTCTTCGTCTAGTACCAAGCTC 59.604 45.833 0.00 0.00 0.00 4.09
879 906 3.682696 TCTTCGTCTAGTACCAAGCTCA 58.317 45.455 0.00 0.00 0.00 4.26
880 907 4.077108 TCTTCGTCTAGTACCAAGCTCAA 58.923 43.478 0.00 0.00 0.00 3.02
881 908 4.156190 TCTTCGTCTAGTACCAAGCTCAAG 59.844 45.833 0.00 0.00 0.00 3.02
955 983 6.438108 TGCAGGTTGTAAGTAGATAGGTGTTA 59.562 38.462 0.00 0.00 0.00 2.41
985 1014 4.210724 AGGAGCTACTAGTAGATAGGCG 57.789 50.000 30.09 6.41 35.63 5.52
1037 1067 2.035442 GCTGAAGGTCCTGTTCGGC 61.035 63.158 8.36 8.36 46.25 5.54
1283 1313 2.992689 TGCCTCAAGTACGGCCGA 60.993 61.111 35.90 13.31 45.71 5.54
1310 1340 3.435186 GGCTTCCTCAAGTGGCGC 61.435 66.667 0.00 0.00 31.45 6.53
1385 1415 2.047179 GTCCGCCACAAGTCCCTC 60.047 66.667 0.00 0.00 0.00 4.30
1470 1500 0.611714 ACCGTACATTTTCCTCGCCT 59.388 50.000 0.00 0.00 0.00 5.52
1471 1501 1.006832 CCGTACATTTTCCTCGCCTG 58.993 55.000 0.00 0.00 0.00 4.85
1472 1502 0.373716 CGTACATTTTCCTCGCCTGC 59.626 55.000 0.00 0.00 0.00 4.85
1474 1504 0.326595 TACATTTTCCTCGCCTGCCA 59.673 50.000 0.00 0.00 0.00 4.92
1475 1505 0.323725 ACATTTTCCTCGCCTGCCAT 60.324 50.000 0.00 0.00 0.00 4.40
1476 1506 0.101759 CATTTTCCTCGCCTGCCATG 59.898 55.000 0.00 0.00 0.00 3.66
1478 1508 0.539438 TTTTCCTCGCCTGCCATGTT 60.539 50.000 0.00 0.00 0.00 2.71
1499 1545 1.081242 CCATGTTTGCGCACTGGAC 60.081 57.895 11.12 7.56 0.00 4.02
1931 1985 2.361737 GGAGGGCAAGGTGAAGGC 60.362 66.667 0.00 0.00 0.00 4.35
1941 1995 2.746277 GTGAAGGCGCGGGTGATT 60.746 61.111 8.83 0.00 0.00 2.57
1983 2037 1.737008 GCACTTCGAGAACGGGACC 60.737 63.158 0.00 0.00 40.21 4.46
2016 2070 2.899838 AACTGCAAGCGCACGGAA 60.900 55.556 11.47 0.00 45.36 4.30
2247 2301 0.682209 ACTGCATCCATTGGTGCCTC 60.682 55.000 20.38 3.27 40.56 4.70
2380 2451 9.763465 CAAGGCAATTTTGATAATGAATTGTTC 57.237 29.630 9.07 3.88 40.88 3.18
2395 2466 6.896883 TGAATTGTTCCATCTCATCTCATCT 58.103 36.000 0.00 0.00 0.00 2.90
2396 2467 6.990939 TGAATTGTTCCATCTCATCTCATCTC 59.009 38.462 0.00 0.00 0.00 2.75
2397 2468 4.952071 TGTTCCATCTCATCTCATCTCC 57.048 45.455 0.00 0.00 0.00 3.71
2398 2469 3.645212 TGTTCCATCTCATCTCATCTCCC 59.355 47.826 0.00 0.00 0.00 4.30
2399 2470 3.903090 GTTCCATCTCATCTCATCTCCCT 59.097 47.826 0.00 0.00 0.00 4.20
2400 2471 3.777087 TCCATCTCATCTCATCTCCCTC 58.223 50.000 0.00 0.00 0.00 4.30
2401 2472 2.833338 CCATCTCATCTCATCTCCCTCC 59.167 54.545 0.00 0.00 0.00 4.30
2402 2473 3.502672 CCATCTCATCTCATCTCCCTCCT 60.503 52.174 0.00 0.00 0.00 3.69
2403 2474 3.989600 TCTCATCTCATCTCCCTCCTT 57.010 47.619 0.00 0.00 0.00 3.36
2425 2502 6.383147 CCTTTCATTCTTCCCTACTACTACCA 59.617 42.308 0.00 0.00 0.00 3.25
2549 2629 1.903183 CTCCTCTCCCCTTTTCTTCGT 59.097 52.381 0.00 0.00 0.00 3.85
2591 2705 3.311322 TCGTATTGGATTCCATTCGCAAC 59.689 43.478 6.15 0.00 31.53 4.17
2791 2931 3.499737 CGCCGCGCTCTTTCCATT 61.500 61.111 5.56 0.00 0.00 3.16
2792 2932 2.405191 GCCGCGCTCTTTCCATTC 59.595 61.111 5.56 0.00 0.00 2.67
2793 2933 2.703409 CCGCGCTCTTTCCATTCG 59.297 61.111 5.56 0.00 0.00 3.34
2794 2934 2.703409 CGCGCTCTTTCCATTCGG 59.297 61.111 5.56 0.00 0.00 4.30
2795 2935 2.100631 CGCGCTCTTTCCATTCGGT 61.101 57.895 5.56 0.00 0.00 4.69
2863 3017 3.730761 CAACCTCTGCACGCTGCC 61.731 66.667 7.38 0.00 44.23 4.85
2922 3096 2.350522 CAAGTTACTGCTGCTACCAGG 58.649 52.381 0.00 0.00 39.54 4.45
2979 3296 1.467713 GGAGCACTACGAAGAGAACGG 60.468 57.143 0.00 0.00 34.93 4.44
2980 3297 1.199558 GAGCACTACGAAGAGAACGGT 59.800 52.381 0.00 0.00 34.93 4.83
2998 3315 4.215742 CGGCCGGCTCCGTTCATA 62.216 66.667 28.56 0.00 44.18 2.15
3081 3398 1.334243 CACGACTAGGTAGCAGGTAGC 59.666 57.143 0.26 0.26 46.19 3.58
3095 3412 5.201713 GCAGGTAGCAGTATCATAAGTCA 57.798 43.478 0.00 0.00 44.79 3.41
3096 3413 5.788450 GCAGGTAGCAGTATCATAAGTCAT 58.212 41.667 0.00 0.00 44.79 3.06
3097 3414 6.925211 GCAGGTAGCAGTATCATAAGTCATA 58.075 40.000 0.00 0.00 44.79 2.15
3191 3509 0.729140 CGCGGCCACACATTCTTTTC 60.729 55.000 2.24 0.00 0.00 2.29
3193 3511 1.000274 GCGGCCACACATTCTTTTCTT 60.000 47.619 2.24 0.00 0.00 2.52
3195 3513 3.716601 CGGCCACACATTCTTTTCTTTT 58.283 40.909 2.24 0.00 0.00 2.27
3244 3562 7.181569 ACATCCGTCCATTTTATCCATTTTT 57.818 32.000 0.00 0.00 0.00 1.94
3245 3563 7.041107 ACATCCGTCCATTTTATCCATTTTTG 58.959 34.615 0.00 0.00 0.00 2.44
3246 3564 6.597832 TCCGTCCATTTTATCCATTTTTGT 57.402 33.333 0.00 0.00 0.00 2.83
3247 3565 6.626302 TCCGTCCATTTTATCCATTTTTGTC 58.374 36.000 0.00 0.00 0.00 3.18
3248 3566 5.810074 CCGTCCATTTTATCCATTTTTGTCC 59.190 40.000 0.00 0.00 0.00 4.02
3260 3578 4.699735 CCATTTTTGTCCTAAATTTGGGCC 59.300 41.667 15.44 5.12 0.00 5.80
3263 3581 0.323908 TGTCCTAAATTTGGGCCGGG 60.324 55.000 15.44 0.00 0.00 5.73
3271 3589 2.182732 ATTTGGGCCGGGTTTGCATG 62.183 55.000 2.18 0.00 0.00 4.06
3274 3592 4.133796 GGCCGGGTTTGCATGCTC 62.134 66.667 20.33 9.23 0.00 4.26
3275 3593 3.372730 GCCGGGTTTGCATGCTCA 61.373 61.111 20.33 2.20 0.00 4.26
3276 3594 2.568090 CCGGGTTTGCATGCTCAC 59.432 61.111 20.33 14.69 0.00 3.51
3277 3595 2.267351 CCGGGTTTGCATGCTCACA 61.267 57.895 20.33 0.00 0.00 3.58
3278 3596 1.659233 CGGGTTTGCATGCTCACAA 59.341 52.632 20.33 1.02 0.00 3.33
3279 3597 0.664166 CGGGTTTGCATGCTCACAAC 60.664 55.000 20.33 15.09 0.00 3.32
3280 3598 0.664166 GGGTTTGCATGCTCACAACG 60.664 55.000 20.33 0.00 0.00 4.10
3281 3599 0.030638 GGTTTGCATGCTCACAACGT 59.969 50.000 20.33 0.00 0.00 3.99
3282 3600 1.535860 GGTTTGCATGCTCACAACGTT 60.536 47.619 20.33 0.00 0.00 3.99
3283 3601 2.192624 GTTTGCATGCTCACAACGTTT 58.807 42.857 20.33 0.00 0.00 3.60
3284 3602 2.575694 TTGCATGCTCACAACGTTTT 57.424 40.000 20.33 0.00 0.00 2.43
3285 3603 2.575694 TGCATGCTCACAACGTTTTT 57.424 40.000 20.33 0.00 0.00 1.94
3304 3622 3.771577 TTTCTTTGTCCTCCTCTGACC 57.228 47.619 0.00 0.00 31.60 4.02
3305 3623 1.645710 TCTTTGTCCTCCTCTGACCC 58.354 55.000 0.00 0.00 31.60 4.46
3306 3624 0.247736 CTTTGTCCTCCTCTGACCCG 59.752 60.000 0.00 0.00 31.60 5.28
3307 3625 1.827399 TTTGTCCTCCTCTGACCCGC 61.827 60.000 0.00 0.00 31.60 6.13
3308 3626 3.462678 GTCCTCCTCTGACCCGCC 61.463 72.222 0.00 0.00 0.00 6.13
3309 3627 4.779733 TCCTCCTCTGACCCGCCC 62.780 72.222 0.00 0.00 0.00 6.13
3319 3637 4.424711 ACCCGCCCGTCCGTAGTA 62.425 66.667 0.00 0.00 0.00 1.82
3320 3638 3.892581 CCCGCCCGTCCGTAGTAC 61.893 72.222 0.00 0.00 0.00 2.73
3321 3639 3.133464 CCGCCCGTCCGTAGTACA 61.133 66.667 0.38 0.00 0.00 2.90
3322 3640 2.100991 CGCCCGTCCGTAGTACAC 59.899 66.667 0.38 0.00 0.00 2.90
3323 3641 2.689785 CGCCCGTCCGTAGTACACA 61.690 63.158 0.38 0.00 0.00 3.72
3324 3642 1.811860 GCCCGTCCGTAGTACACAT 59.188 57.895 0.38 0.00 0.00 3.21
3325 3643 1.024271 GCCCGTCCGTAGTACACATA 58.976 55.000 0.38 0.00 0.00 2.29
3326 3644 1.405105 GCCCGTCCGTAGTACACATAA 59.595 52.381 0.38 0.00 0.00 1.90
3327 3645 2.542411 GCCCGTCCGTAGTACACATAAG 60.542 54.545 0.38 0.00 0.00 1.73
3328 3646 2.542411 CCCGTCCGTAGTACACATAAGC 60.542 54.545 0.38 0.00 0.00 3.09
3329 3647 2.369600 CGTCCGTAGTACACATAAGCG 58.630 52.381 0.38 0.00 0.00 4.68
3330 3648 2.114825 GTCCGTAGTACACATAAGCGC 58.885 52.381 0.00 0.00 0.00 5.92
3331 3649 1.066002 TCCGTAGTACACATAAGCGCC 59.934 52.381 2.29 0.00 0.00 6.53
3332 3650 1.202325 CCGTAGTACACATAAGCGCCA 60.202 52.381 2.29 0.00 0.00 5.69
3333 3651 2.545113 CCGTAGTACACATAAGCGCCAT 60.545 50.000 2.29 0.00 0.00 4.40
3334 3652 3.120792 CGTAGTACACATAAGCGCCATT 58.879 45.455 2.29 0.00 0.00 3.16
3335 3653 3.181774 CGTAGTACACATAAGCGCCATTC 59.818 47.826 2.29 0.00 0.00 2.67
3336 3654 3.543680 AGTACACATAAGCGCCATTCT 57.456 42.857 2.29 0.00 0.00 2.40
3337 3655 3.458189 AGTACACATAAGCGCCATTCTC 58.542 45.455 2.29 0.00 0.00 2.87
3338 3656 2.698855 ACACATAAGCGCCATTCTCT 57.301 45.000 2.29 0.00 0.00 3.10
3339 3657 2.991250 ACACATAAGCGCCATTCTCTT 58.009 42.857 2.29 0.00 0.00 2.85
3340 3658 2.939103 ACACATAAGCGCCATTCTCTTC 59.061 45.455 2.29 0.00 0.00 2.87
3341 3659 2.033407 CACATAAGCGCCATTCTCTTCG 60.033 50.000 2.29 0.00 0.00 3.79
3342 3660 1.070309 CATAAGCGCCATTCTCTTCGC 60.070 52.381 2.29 0.00 46.95 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.184579 GCGAGACAGGTGGGCTAC 59.815 66.667 0.00 0.00 0.00 3.58
7 8 3.075005 GGCGAGACAGGTGGGCTA 61.075 66.667 0.00 0.00 0.00 3.93
23 24 4.758251 TCCTGTCATGTGGCGCGG 62.758 66.667 8.83 0.00 0.00 6.46
24 25 2.741985 TTCCTGTCATGTGGCGCG 60.742 61.111 0.00 0.00 0.00 6.86
25 26 2.401766 CCTTCCTGTCATGTGGCGC 61.402 63.158 0.00 0.00 0.00 6.53
26 27 2.401766 GCCTTCCTGTCATGTGGCG 61.402 63.158 0.00 0.00 0.00 5.69
27 28 2.048603 GGCCTTCCTGTCATGTGGC 61.049 63.158 0.00 0.00 39.61 5.01
28 29 0.033796 ATGGCCTTCCTGTCATGTGG 60.034 55.000 3.32 0.00 0.00 4.17
29 30 1.386533 GATGGCCTTCCTGTCATGTG 58.613 55.000 3.32 0.00 0.00 3.21
30 31 0.257039 GGATGGCCTTCCTGTCATGT 59.743 55.000 26.72 0.00 32.68 3.21
31 32 0.549950 AGGATGGCCTTCCTGTCATG 59.450 55.000 33.65 0.00 43.90 3.07
32 33 2.053244 CTAGGATGGCCTTCCTGTCAT 58.947 52.381 38.33 21.62 45.85 3.06
33 34 1.500474 CTAGGATGGCCTTCCTGTCA 58.500 55.000 38.33 23.87 45.85 3.58
34 35 0.761802 CCTAGGATGGCCTTCCTGTC 59.238 60.000 38.33 15.51 45.85 3.51
35 36 0.695803 CCCTAGGATGGCCTTCCTGT 60.696 60.000 38.33 22.87 45.85 4.00
36 37 1.422161 CCCCTAGGATGGCCTTCCTG 61.422 65.000 38.33 28.80 45.85 3.86
37 38 1.073397 CCCCTAGGATGGCCTTCCT 60.073 63.158 35.33 35.33 43.90 3.36
38 39 2.835049 GCCCCTAGGATGGCCTTCC 61.835 68.421 26.72 26.72 43.90 3.46
39 40 2.839836 GCCCCTAGGATGGCCTTC 59.160 66.667 16.23 10.18 43.90 3.46
45 46 4.256180 GTGGCGGCCCCTAGGATG 62.256 72.222 17.97 1.63 33.47 3.51
57 58 4.856801 CTTGGATCCGGGGTGGCG 62.857 72.222 7.39 0.00 37.80 5.69
58 59 4.506255 CCTTGGATCCGGGGTGGC 62.506 72.222 7.39 0.00 37.80 5.01
59 60 4.506255 GCCTTGGATCCGGGGTGG 62.506 72.222 20.67 12.78 40.09 4.61
60 61 4.506255 GGCCTTGGATCCGGGGTG 62.506 72.222 20.67 4.40 0.00 4.61
63 64 2.447765 TAGGGCCTTGGATCCGGG 60.448 66.667 13.45 16.58 0.00 5.73
64 65 2.829592 GTAGGGCCTTGGATCCGG 59.170 66.667 13.45 4.10 0.00 5.14
65 66 2.421739 CGTAGGGCCTTGGATCCG 59.578 66.667 13.45 0.96 0.00 4.18
66 67 2.111251 GCGTAGGGCCTTGGATCC 59.889 66.667 13.45 4.20 34.80 3.36
75 76 1.823899 CAGATTTGGGGCGTAGGGC 60.824 63.158 0.00 0.00 42.51 5.19
76 77 1.152963 CCAGATTTGGGGCGTAGGG 60.153 63.158 0.00 0.00 41.05 3.53
77 78 4.559502 CCAGATTTGGGGCGTAGG 57.440 61.111 0.00 0.00 41.05 3.18
86 87 2.223641 CGGCATTGATCCACCAGATTTG 60.224 50.000 0.00 0.00 34.42 2.32
87 88 2.026641 CGGCATTGATCCACCAGATTT 58.973 47.619 0.00 0.00 34.42 2.17
88 89 1.683943 CGGCATTGATCCACCAGATT 58.316 50.000 0.00 0.00 34.42 2.40
89 90 0.179009 CCGGCATTGATCCACCAGAT 60.179 55.000 0.00 0.00 38.17 2.90
90 91 1.224315 CCGGCATTGATCCACCAGA 59.776 57.895 0.00 0.00 0.00 3.86
91 92 2.484062 GCCGGCATTGATCCACCAG 61.484 63.158 24.80 0.00 0.00 4.00
92 93 2.440065 GCCGGCATTGATCCACCA 60.440 61.111 24.80 0.00 0.00 4.17
93 94 3.219198 GGCCGGCATTGATCCACC 61.219 66.667 30.85 1.84 0.00 4.61
94 95 3.585990 CGGCCGGCATTGATCCAC 61.586 66.667 30.85 6.07 0.00 4.02
95 96 3.755526 CTCGGCCGGCATTGATCCA 62.756 63.158 30.85 0.00 0.00 3.41
96 97 2.974698 CTCGGCCGGCATTGATCC 60.975 66.667 30.85 7.76 0.00 3.36
97 98 3.654020 GCTCGGCCGGCATTGATC 61.654 66.667 30.85 14.40 0.00 2.92
116 117 2.740055 CCAGCCAGCGTCAGTGAC 60.740 66.667 13.56 13.56 0.00 3.67
117 118 4.687215 GCCAGCCAGCGTCAGTGA 62.687 66.667 0.00 0.00 0.00 3.41
142 143 4.873129 CGATCTGGTCCACGGCGG 62.873 72.222 13.24 0.00 0.00 6.13
143 144 4.873129 CCGATCTGGTCCACGGCG 62.873 72.222 4.80 4.80 38.98 6.46
145 146 2.125326 TAGCCGATCTGGTCCACGG 61.125 63.158 13.72 13.72 46.74 4.94
146 147 1.065928 GTAGCCGATCTGGTCCACG 59.934 63.158 0.00 0.00 41.21 4.94
147 148 0.753262 ATGTAGCCGATCTGGTCCAC 59.247 55.000 0.00 0.00 41.21 4.02
148 149 1.040646 GATGTAGCCGATCTGGTCCA 58.959 55.000 0.00 0.00 41.21 4.02
149 150 0.039074 CGATGTAGCCGATCTGGTCC 60.039 60.000 0.00 0.00 41.21 4.46
150 151 0.664767 GCGATGTAGCCGATCTGGTC 60.665 60.000 0.00 0.00 41.21 4.02
151 152 1.364171 GCGATGTAGCCGATCTGGT 59.636 57.895 5.66 0.08 41.21 4.00
152 153 0.665670 CTGCGATGTAGCCGATCTGG 60.666 60.000 0.00 0.00 42.50 3.86
153 154 0.031314 ACTGCGATGTAGCCGATCTG 59.969 55.000 0.00 0.00 36.02 2.90
154 155 0.747255 AACTGCGATGTAGCCGATCT 59.253 50.000 0.00 0.00 36.02 2.75
155 156 0.855349 CAACTGCGATGTAGCCGATC 59.145 55.000 0.00 0.00 36.02 3.69
156 157 0.459899 TCAACTGCGATGTAGCCGAT 59.540 50.000 0.00 0.00 36.02 4.18
157 158 0.459899 ATCAACTGCGATGTAGCCGA 59.540 50.000 0.00 0.00 36.02 5.54
158 159 0.855349 GATCAACTGCGATGTAGCCG 59.145 55.000 0.00 0.00 36.02 5.52
159 160 0.855349 CGATCAACTGCGATGTAGCC 59.145 55.000 0.00 0.00 36.02 3.93
160 161 0.855349 CCGATCAACTGCGATGTAGC 59.145 55.000 0.00 0.00 37.71 3.58
161 162 1.491670 CCCGATCAACTGCGATGTAG 58.508 55.000 0.00 0.00 0.00 2.74
162 163 0.104120 CCCCGATCAACTGCGATGTA 59.896 55.000 0.00 0.00 0.00 2.29
163 164 1.153369 CCCCGATCAACTGCGATGT 60.153 57.895 0.00 0.00 0.00 3.06
164 165 2.537560 GCCCCGATCAACTGCGATG 61.538 63.158 0.00 0.00 0.00 3.84
165 166 2.203070 GCCCCGATCAACTGCGAT 60.203 61.111 0.00 0.00 0.00 4.58
166 167 4.467084 GGCCCCGATCAACTGCGA 62.467 66.667 0.00 0.00 0.00 5.10
169 170 4.776322 TGCGGCCCCGATCAACTG 62.776 66.667 11.48 0.00 42.83 3.16
170 171 4.778143 GTGCGGCCCCGATCAACT 62.778 66.667 11.48 0.00 42.83 3.16
180 181 4.021925 AGACTTGAGGGTGCGGCC 62.022 66.667 0.00 0.00 0.00 6.13
181 182 2.743928 CAGACTTGAGGGTGCGGC 60.744 66.667 0.00 0.00 0.00 6.53
182 183 2.046892 CCAGACTTGAGGGTGCGG 60.047 66.667 0.00 0.00 0.00 5.69
183 184 2.046892 CCCAGACTTGAGGGTGCG 60.047 66.667 0.00 0.00 40.34 5.34
188 189 4.785453 GGGCGCCCAGACTTGAGG 62.785 72.222 40.73 0.00 35.81 3.86
189 190 4.785453 GGGGCGCCCAGACTTGAG 62.785 72.222 44.46 0.00 44.65 3.02
202 203 4.796495 CTTAGGGTGGCACGGGGC 62.796 72.222 12.17 3.20 43.74 5.80
203 204 3.006728 TCTTAGGGTGGCACGGGG 61.007 66.667 12.17 0.21 0.00 5.73
204 205 2.584608 CTCTTAGGGTGGCACGGG 59.415 66.667 12.17 0.00 0.00 5.28
205 206 2.125106 GCTCTTAGGGTGGCACGG 60.125 66.667 12.17 0.00 0.00 4.94
206 207 1.448540 CTGCTCTTAGGGTGGCACG 60.449 63.158 12.17 0.00 0.00 5.34
207 208 0.107945 CTCTGCTCTTAGGGTGGCAC 60.108 60.000 9.70 9.70 0.00 5.01
208 209 1.267574 CCTCTGCTCTTAGGGTGGCA 61.268 60.000 0.00 0.00 0.00 4.92
209 210 1.524482 CCTCTGCTCTTAGGGTGGC 59.476 63.158 0.00 0.00 0.00 5.01
210 211 2.216148 CCCTCTGCTCTTAGGGTGG 58.784 63.158 0.00 0.00 46.45 4.61
214 215 0.263172 TCCCTCCCTCTGCTCTTAGG 59.737 60.000 0.00 0.00 0.00 2.69
215 216 1.703411 CTCCCTCCCTCTGCTCTTAG 58.297 60.000 0.00 0.00 0.00 2.18
216 217 0.397816 GCTCCCTCCCTCTGCTCTTA 60.398 60.000 0.00 0.00 0.00 2.10
217 218 1.688884 GCTCCCTCCCTCTGCTCTT 60.689 63.158 0.00 0.00 0.00 2.85
218 219 2.042025 GCTCCCTCCCTCTGCTCT 60.042 66.667 0.00 0.00 0.00 4.09
219 220 3.535962 CGCTCCCTCCCTCTGCTC 61.536 72.222 0.00 0.00 0.00 4.26
220 221 3.914551 AACGCTCCCTCCCTCTGCT 62.915 63.158 0.00 0.00 0.00 4.24
221 222 3.394836 AACGCTCCCTCCCTCTGC 61.395 66.667 0.00 0.00 0.00 4.26
222 223 2.581354 CAACGCTCCCTCCCTCTG 59.419 66.667 0.00 0.00 0.00 3.35
223 224 3.394836 GCAACGCTCCCTCCCTCT 61.395 66.667 0.00 0.00 0.00 3.69
224 225 4.475135 GGCAACGCTCCCTCCCTC 62.475 72.222 0.00 0.00 0.00 4.30
226 227 4.475135 GAGGCAACGCTCCCTCCC 62.475 72.222 4.89 0.00 41.42 4.30
228 229 2.932130 GATGGAGGCAACGCTCCCTC 62.932 65.000 4.51 7.17 45.52 4.30
229 230 3.011517 ATGGAGGCAACGCTCCCT 61.012 61.111 4.51 0.00 46.39 4.20
230 231 2.514824 GATGGAGGCAACGCTCCC 60.515 66.667 4.51 0.00 46.39 4.30
231 232 2.109126 GTGATGGAGGCAACGCTCC 61.109 63.158 0.00 0.00 46.39 4.70
232 233 2.109126 GGTGATGGAGGCAACGCTC 61.109 63.158 0.00 0.00 46.39 5.03
233 234 2.045926 GGTGATGGAGGCAACGCT 60.046 61.111 0.00 0.00 46.39 5.07
234 235 3.499737 CGGTGATGGAGGCAACGC 61.500 66.667 0.00 0.00 39.78 4.84
236 237 2.045926 AGCGGTGATGGAGGCAAC 60.046 61.111 0.00 0.00 0.00 4.17
237 238 2.046023 CAGCGGTGATGGAGGCAA 60.046 61.111 9.50 0.00 0.00 4.52
238 239 4.783621 GCAGCGGTGATGGAGGCA 62.784 66.667 20.69 0.00 0.00 4.75
239 240 2.985512 CTAGCAGCGGTGATGGAGGC 62.986 65.000 20.69 0.00 0.00 4.70
240 241 1.068753 CTAGCAGCGGTGATGGAGG 59.931 63.158 20.69 0.68 0.00 4.30
241 242 1.068753 CCTAGCAGCGGTGATGGAG 59.931 63.158 20.69 7.27 0.00 3.86
242 243 2.434843 CCCTAGCAGCGGTGATGGA 61.435 63.158 20.69 0.00 0.00 3.41
243 244 2.109799 CCCTAGCAGCGGTGATGG 59.890 66.667 20.69 14.81 0.00 3.51
244 245 1.091771 CAACCCTAGCAGCGGTGATG 61.092 60.000 20.69 7.05 30.96 3.07
245 246 1.221840 CAACCCTAGCAGCGGTGAT 59.778 57.895 20.69 16.00 30.96 3.06
246 247 1.888436 CTCAACCCTAGCAGCGGTGA 61.888 60.000 20.69 0.00 30.96 4.02
247 248 1.448540 CTCAACCCTAGCAGCGGTG 60.449 63.158 10.98 10.98 30.96 4.94
248 249 2.660064 CCTCAACCCTAGCAGCGGT 61.660 63.158 0.00 0.00 0.00 5.68
249 250 2.187946 CCTCAACCCTAGCAGCGG 59.812 66.667 0.00 0.00 0.00 5.52
250 251 2.512515 GCCTCAACCCTAGCAGCG 60.513 66.667 0.00 0.00 0.00 5.18
251 252 2.124529 GGCCTCAACCCTAGCAGC 60.125 66.667 0.00 0.00 0.00 5.25
259 260 0.035343 GTGACCTAAGGGCCTCAACC 60.035 60.000 6.46 0.00 35.63 3.77
260 261 0.035343 GGTGACCTAAGGGCCTCAAC 60.035 60.000 6.46 0.00 35.63 3.18
261 262 2.383608 GGTGACCTAAGGGCCTCAA 58.616 57.895 6.46 0.00 35.63 3.02
262 263 4.147135 GGTGACCTAAGGGCCTCA 57.853 61.111 6.46 0.00 35.63 3.86
285 286 4.928520 CTCCCCTCCCCCATCCCC 62.929 77.778 0.00 0.00 0.00 4.81
286 287 4.928520 CCTCCCCTCCCCCATCCC 62.929 77.778 0.00 0.00 0.00 3.85
287 288 4.928520 CCCTCCCCTCCCCCATCC 62.929 77.778 0.00 0.00 0.00 3.51
288 289 3.791076 TCCCTCCCCTCCCCCATC 61.791 72.222 0.00 0.00 0.00 3.51
289 290 3.795924 CTCCCTCCCCTCCCCCAT 61.796 72.222 0.00 0.00 0.00 4.00
293 294 3.054557 ATTCCCTCCCTCCCCTCCC 62.055 68.421 0.00 0.00 0.00 4.30
294 295 1.772156 CATTCCCTCCCTCCCCTCC 60.772 68.421 0.00 0.00 0.00 4.30
295 296 1.772156 CCATTCCCTCCCTCCCCTC 60.772 68.421 0.00 0.00 0.00 4.30
296 297 2.378522 CCATTCCCTCCCTCCCCT 59.621 66.667 0.00 0.00 0.00 4.79
297 298 2.778717 CCCATTCCCTCCCTCCCC 60.779 72.222 0.00 0.00 0.00 4.81
298 299 1.772156 CTCCCATTCCCTCCCTCCC 60.772 68.421 0.00 0.00 0.00 4.30
299 300 1.772156 CCTCCCATTCCCTCCCTCC 60.772 68.421 0.00 0.00 0.00 4.30
300 301 1.772156 CCCTCCCATTCCCTCCCTC 60.772 68.421 0.00 0.00 0.00 4.30
301 302 2.378522 CCCTCCCATTCCCTCCCT 59.621 66.667 0.00 0.00 0.00 4.20
302 303 2.778717 CCCCTCCCATTCCCTCCC 60.779 72.222 0.00 0.00 0.00 4.30
303 304 1.772156 CTCCCCTCCCATTCCCTCC 60.772 68.421 0.00 0.00 0.00 4.30
304 305 1.772156 CCTCCCCTCCCATTCCCTC 60.772 68.421 0.00 0.00 0.00 4.30
305 306 2.378522 CCTCCCCTCCCATTCCCT 59.621 66.667 0.00 0.00 0.00 4.20
306 307 2.778717 CCCTCCCCTCCCATTCCC 60.779 72.222 0.00 0.00 0.00 3.97
307 308 3.502875 GCCCTCCCCTCCCATTCC 61.503 72.222 0.00 0.00 0.00 3.01
308 309 3.878667 CGCCCTCCCCTCCCATTC 61.879 72.222 0.00 0.00 0.00 2.67
327 328 4.208686 GTAGGCCCTCTGTCGCGG 62.209 72.222 6.13 0.00 0.00 6.46
328 329 4.208686 GGTAGGCCCTCTGTCGCG 62.209 72.222 0.00 0.00 0.00 5.87
329 330 2.180159 TTTGGTAGGCCCTCTGTCGC 62.180 60.000 0.00 0.00 0.00 5.19
330 331 0.391263 GTTTGGTAGGCCCTCTGTCG 60.391 60.000 0.00 0.00 0.00 4.35
331 332 0.391263 CGTTTGGTAGGCCCTCTGTC 60.391 60.000 0.00 0.00 0.00 3.51
332 333 0.834687 TCGTTTGGTAGGCCCTCTGT 60.835 55.000 0.00 0.00 0.00 3.41
333 334 0.108138 CTCGTTTGGTAGGCCCTCTG 60.108 60.000 0.00 0.00 0.00 3.35
334 335 0.544595 ACTCGTTTGGTAGGCCCTCT 60.545 55.000 0.00 0.00 0.00 3.69
335 336 1.134877 GTACTCGTTTGGTAGGCCCTC 60.135 57.143 0.00 0.00 0.00 4.30
336 337 0.900421 GTACTCGTTTGGTAGGCCCT 59.100 55.000 0.00 0.00 0.00 5.19
337 338 0.459063 CGTACTCGTTTGGTAGGCCC 60.459 60.000 0.00 0.00 0.00 5.80
338 339 3.040409 CGTACTCGTTTGGTAGGCC 57.960 57.895 0.00 0.00 0.00 5.19
349 350 6.090628 GGTCAATATCCTACTCTACGTACTCG 59.909 46.154 0.00 0.00 43.34 4.18
350 351 6.933521 TGGTCAATATCCTACTCTACGTACTC 59.066 42.308 0.00 0.00 0.00 2.59
351 352 6.835174 TGGTCAATATCCTACTCTACGTACT 58.165 40.000 0.00 0.00 0.00 2.73
352 353 7.228308 ACTTGGTCAATATCCTACTCTACGTAC 59.772 40.741 0.00 0.00 0.00 3.67
353 354 7.285566 ACTTGGTCAATATCCTACTCTACGTA 58.714 38.462 0.00 0.00 0.00 3.57
354 355 6.127793 ACTTGGTCAATATCCTACTCTACGT 58.872 40.000 0.00 0.00 0.00 3.57
355 356 6.566187 CGACTTGGTCAATATCCTACTCTACG 60.566 46.154 0.00 0.00 32.09 3.51
356 357 6.670233 CGACTTGGTCAATATCCTACTCTAC 58.330 44.000 0.00 0.00 32.09 2.59
357 358 5.241064 GCGACTTGGTCAATATCCTACTCTA 59.759 44.000 0.00 0.00 32.09 2.43
358 359 4.038162 GCGACTTGGTCAATATCCTACTCT 59.962 45.833 0.00 0.00 32.09 3.24
359 360 4.038162 AGCGACTTGGTCAATATCCTACTC 59.962 45.833 0.00 0.00 32.09 2.59
360 361 3.961408 AGCGACTTGGTCAATATCCTACT 59.039 43.478 0.00 0.00 32.09 2.57
361 362 4.323553 AGCGACTTGGTCAATATCCTAC 57.676 45.455 0.00 0.00 32.09 3.18
362 363 4.404394 TGAAGCGACTTGGTCAATATCCTA 59.596 41.667 0.00 0.00 32.09 2.94
363 364 3.197766 TGAAGCGACTTGGTCAATATCCT 59.802 43.478 0.00 0.00 32.09 3.24
364 365 3.531538 TGAAGCGACTTGGTCAATATCC 58.468 45.455 0.00 0.00 32.09 2.59
365 366 4.433615 TCTGAAGCGACTTGGTCAATATC 58.566 43.478 0.00 0.00 32.09 1.63
366 367 4.471904 TCTGAAGCGACTTGGTCAATAT 57.528 40.909 0.00 0.00 32.09 1.28
367 368 3.953712 TCTGAAGCGACTTGGTCAATA 57.046 42.857 0.00 0.00 32.09 1.90
368 369 2.839486 TCTGAAGCGACTTGGTCAAT 57.161 45.000 0.00 0.00 32.09 2.57
369 370 2.300152 AGATCTGAAGCGACTTGGTCAA 59.700 45.455 0.00 0.00 32.09 3.18
370 371 1.895798 AGATCTGAAGCGACTTGGTCA 59.104 47.619 0.00 0.00 32.09 4.02
371 372 2.266554 CAGATCTGAAGCGACTTGGTC 58.733 52.381 18.34 0.00 0.00 4.02
372 373 1.674221 GCAGATCTGAAGCGACTTGGT 60.674 52.381 27.04 0.00 0.00 3.67
373 374 1.005340 GCAGATCTGAAGCGACTTGG 58.995 55.000 27.04 0.00 0.00 3.61
374 375 1.659601 CTGCAGATCTGAAGCGACTTG 59.340 52.381 27.04 0.00 27.85 3.16
375 376 1.547820 TCTGCAGATCTGAAGCGACTT 59.452 47.619 27.04 0.00 36.17 3.01
376 377 1.134753 CTCTGCAGATCTGAAGCGACT 59.865 52.381 27.04 0.00 36.17 4.18
377 378 1.558741 CTCTGCAGATCTGAAGCGAC 58.441 55.000 27.04 7.83 36.17 5.19
378 379 0.459078 CCTCTGCAGATCTGAAGCGA 59.541 55.000 27.04 9.60 36.17 4.93
379 380 1.152989 GCCTCTGCAGATCTGAAGCG 61.153 60.000 27.04 19.73 36.17 4.68
380 381 0.814812 GGCCTCTGCAGATCTGAAGC 60.815 60.000 27.04 15.35 36.17 3.86
381 382 0.179051 GGGCCTCTGCAGATCTGAAG 60.179 60.000 27.04 25.06 40.13 3.02
382 383 0.619832 AGGGCCTCTGCAGATCTGAA 60.620 55.000 27.04 15.81 40.13 3.02
383 384 1.002662 AGGGCCTCTGCAGATCTGA 59.997 57.895 27.04 10.43 40.13 3.27
384 385 1.146485 CAGGGCCTCTGCAGATCTG 59.854 63.158 18.63 18.84 40.13 2.90
385 386 2.071262 CCAGGGCCTCTGCAGATCT 61.071 63.158 18.63 9.77 42.05 2.75
386 387 2.042404 CTCCAGGGCCTCTGCAGATC 62.042 65.000 18.63 12.02 42.05 2.75
387 388 2.041762 TCCAGGGCCTCTGCAGAT 59.958 61.111 18.63 0.00 42.05 2.90
388 389 2.686470 CTCCAGGGCCTCTGCAGA 60.686 66.667 17.19 17.19 42.05 4.26
389 390 3.795041 CCTCCAGGGCCTCTGCAG 61.795 72.222 7.63 7.63 42.05 4.41
410 411 3.520862 CATCATGCGGTGCACCCC 61.521 66.667 29.95 22.14 43.04 4.95
411 412 4.197498 GCATCATGCGGTGCACCC 62.197 66.667 29.95 21.83 43.04 4.61
447 448 1.418908 GGATGTCATGGACGGGGGAT 61.419 60.000 0.00 0.00 34.95 3.85
448 449 2.070039 GGATGTCATGGACGGGGGA 61.070 63.158 0.00 0.00 34.95 4.81
449 450 2.510906 GGATGTCATGGACGGGGG 59.489 66.667 0.00 0.00 34.95 5.40
450 451 2.510906 GGGATGTCATGGACGGGG 59.489 66.667 0.00 0.00 34.95 5.73
472 473 1.675714 CCATTTGCCAGTCGAGCTGTA 60.676 52.381 0.00 1.60 43.55 2.74
504 505 0.681733 ACTCGCATGACCTCTGTTGT 59.318 50.000 0.00 0.00 0.00 3.32
532 533 2.162681 GATTATGCTACCCACCATGGC 58.837 52.381 13.04 0.00 35.79 4.40
555 556 1.354337 CTTGTGCTGCGTGCGACTAT 61.354 55.000 0.00 0.00 46.63 2.12
568 569 0.539669 AACCTAACCCTGCCTTGTGC 60.540 55.000 0.00 0.00 41.77 4.57
579 580 3.127895 TCGCAATGCAATGTAACCTAACC 59.872 43.478 5.91 0.00 0.00 2.85
741 748 3.181434 ACCCTGTCTCTCTAGGCTATCTG 60.181 52.174 0.00 0.00 32.58 2.90
750 757 0.039180 TTGCGGACCCTGTCTCTCTA 59.961 55.000 0.00 0.00 32.47 2.43
795 804 2.158564 TGGATGGATGGATGGCTCTTTC 60.159 50.000 0.00 0.00 0.00 2.62
802 811 2.357881 GGGATGATGGATGGATGGATGG 60.358 54.545 0.00 0.00 0.00 3.51
803 812 2.357881 GGGGATGATGGATGGATGGATG 60.358 54.545 0.00 0.00 0.00 3.51
804 813 1.928077 GGGGATGATGGATGGATGGAT 59.072 52.381 0.00 0.00 0.00 3.41
805 814 1.131970 AGGGGATGATGGATGGATGGA 60.132 52.381 0.00 0.00 0.00 3.41
876 903 7.658525 ACCATGGATATCTATCTAGCTTGAG 57.341 40.000 21.47 0.00 33.28 3.02
877 904 8.441311 AAACCATGGATATCTATCTAGCTTGA 57.559 34.615 21.47 0.00 33.28 3.02
878 905 9.512588 AAAAACCATGGATATCTATCTAGCTTG 57.487 33.333 21.47 0.00 33.28 4.01
879 906 9.732130 GAAAAACCATGGATATCTATCTAGCTT 57.268 33.333 21.47 0.00 33.28 3.74
880 907 9.110382 AGAAAAACCATGGATATCTATCTAGCT 57.890 33.333 21.47 0.00 33.28 3.32
881 908 9.377312 GAGAAAAACCATGGATATCTATCTAGC 57.623 37.037 21.47 0.00 33.28 3.42
955 983 8.593945 ATCTACTAGTAGCTCCTACTACGTAT 57.406 38.462 22.87 5.71 44.35 3.06
965 993 3.272581 CCGCCTATCTACTAGTAGCTCC 58.727 54.545 22.87 9.53 33.32 4.70
966 994 2.679336 GCCGCCTATCTACTAGTAGCTC 59.321 54.545 22.87 9.81 33.32 4.09
967 995 2.713877 GCCGCCTATCTACTAGTAGCT 58.286 52.381 22.87 16.85 33.32 3.32
969 997 2.008329 CCGCCGCCTATCTACTAGTAG 58.992 57.143 21.87 21.87 34.56 2.57
970 998 1.339438 CCCGCCGCCTATCTACTAGTA 60.339 57.143 1.89 1.89 0.00 1.82
971 999 0.608582 CCCGCCGCCTATCTACTAGT 60.609 60.000 0.00 0.00 0.00 2.57
972 1000 0.608582 ACCCGCCGCCTATCTACTAG 60.609 60.000 0.00 0.00 0.00 2.57
973 1001 0.892358 CACCCGCCGCCTATCTACTA 60.892 60.000 0.00 0.00 0.00 1.82
974 1002 2.197875 ACCCGCCGCCTATCTACT 59.802 61.111 0.00 0.00 0.00 2.57
975 1003 2.338984 CACCCGCCGCCTATCTAC 59.661 66.667 0.00 0.00 0.00 2.59
985 1014 4.779733 TCTCCTCTCCCACCCGCC 62.780 72.222 0.00 0.00 0.00 6.13
1153 1183 0.036952 CTTCATCACGCTCACCACCT 60.037 55.000 0.00 0.00 0.00 4.00
1385 1415 4.493747 GAGTCCCCGACGAAGGCG 62.494 72.222 0.00 0.00 44.79 5.52
1474 1504 0.249784 TGCGCAAACATGGCAAACAT 60.250 45.000 8.16 0.00 41.57 2.71
1475 1505 1.142531 TGCGCAAACATGGCAAACA 59.857 47.368 8.16 0.00 33.01 2.83
1476 1506 0.875474 AGTGCGCAAACATGGCAAAC 60.875 50.000 14.00 0.00 38.58 2.93
1478 1508 1.300003 CAGTGCGCAAACATGGCAA 60.300 52.632 14.00 0.00 38.58 4.52
1499 1545 2.260844 TGTTCAGCCTCAAAGGTCAG 57.739 50.000 0.00 0.00 37.80 3.51
2052 2106 0.389948 CCGTGTAGAACTGCAGGTCC 60.390 60.000 28.05 14.36 30.87 4.46
2115 2169 4.052518 ATCAGCCGCAGCCCCTTT 62.053 61.111 0.00 0.00 41.25 3.11
2193 2247 2.281484 TTCTCGTTGGGCCAGTGC 60.281 61.111 6.23 0.09 0.00 4.40
2380 2451 2.833338 GGAGGGAGATGAGATGAGATGG 59.167 54.545 0.00 0.00 0.00 3.51
2395 2466 2.934722 AGGGAAGAATGAAAGGAGGGA 58.065 47.619 0.00 0.00 0.00 4.20
2396 2467 3.783082 AGTAGGGAAGAATGAAAGGAGGG 59.217 47.826 0.00 0.00 0.00 4.30
2397 2468 5.663556 AGTAGTAGGGAAGAATGAAAGGAGG 59.336 44.000 0.00 0.00 0.00 4.30
2398 2469 6.800072 AGTAGTAGGGAAGAATGAAAGGAG 57.200 41.667 0.00 0.00 0.00 3.69
2399 2470 6.610425 GGTAGTAGTAGGGAAGAATGAAAGGA 59.390 42.308 0.00 0.00 0.00 3.36
2400 2471 6.383147 TGGTAGTAGTAGGGAAGAATGAAAGG 59.617 42.308 0.00 0.00 0.00 3.11
2401 2472 7.124448 ACTGGTAGTAGTAGGGAAGAATGAAAG 59.876 40.741 0.00 0.00 0.00 2.62
2402 2473 6.958192 ACTGGTAGTAGTAGGGAAGAATGAAA 59.042 38.462 0.00 0.00 0.00 2.69
2403 2474 6.500336 ACTGGTAGTAGTAGGGAAGAATGAA 58.500 40.000 0.00 0.00 0.00 2.57
2425 2502 1.473434 GGAATGGAAAGCGGATCGACT 60.473 52.381 0.00 0.00 0.00 4.18
2549 2629 6.189677 ACGAGATGACTTGTGTTTTTCAAA 57.810 33.333 0.00 0.00 39.09 2.69
2783 2923 4.002982 TCATTCACTCACCGAATGGAAAG 58.997 43.478 11.73 0.00 46.37 2.62
2787 2927 4.970662 AATTCATTCACTCACCGAATGG 57.029 40.909 11.73 0.00 46.37 3.16
2789 2929 5.964958 ACAAATTCATTCACTCACCGAAT 57.035 34.783 0.00 0.00 33.33 3.34
2790 2930 5.766150 AACAAATTCATTCACTCACCGAA 57.234 34.783 0.00 0.00 0.00 4.30
2791 2931 5.067153 ACAAACAAATTCATTCACTCACCGA 59.933 36.000 0.00 0.00 0.00 4.69
2792 2932 5.173673 CACAAACAAATTCATTCACTCACCG 59.826 40.000 0.00 0.00 0.00 4.94
2793 2933 6.042143 ACACAAACAAATTCATTCACTCACC 58.958 36.000 0.00 0.00 0.00 4.02
2794 2934 7.393327 CAACACAAACAAATTCATTCACTCAC 58.607 34.615 0.00 0.00 0.00 3.51
2795 2935 6.534436 CCAACACAAACAAATTCATTCACTCA 59.466 34.615 0.00 0.00 0.00 3.41
2998 3315 0.668401 CGCCTTTACCTCGAAACCGT 60.668 55.000 0.00 0.00 0.00 4.83
3081 3398 6.425114 GGCTGTGGTTATGACTTATGATACTG 59.575 42.308 0.00 0.00 0.00 2.74
3086 3403 4.513442 GTGGCTGTGGTTATGACTTATGA 58.487 43.478 0.00 0.00 0.00 2.15
3087 3404 3.309682 CGTGGCTGTGGTTATGACTTATG 59.690 47.826 0.00 0.00 0.00 1.90
3090 3407 1.346395 TCGTGGCTGTGGTTATGACTT 59.654 47.619 0.00 0.00 0.00 3.01
3092 3409 1.076332 GTCGTGGCTGTGGTTATGAC 58.924 55.000 0.00 0.00 0.00 3.06
3093 3410 0.973632 AGTCGTGGCTGTGGTTATGA 59.026 50.000 0.00 0.00 0.00 2.15
3094 3411 1.359848 GAGTCGTGGCTGTGGTTATG 58.640 55.000 0.00 0.00 0.00 1.90
3095 3412 0.249398 GGAGTCGTGGCTGTGGTTAT 59.751 55.000 0.00 0.00 0.00 1.89
3096 3413 1.116536 TGGAGTCGTGGCTGTGGTTA 61.117 55.000 0.00 0.00 0.00 2.85
3097 3414 1.768684 ATGGAGTCGTGGCTGTGGTT 61.769 55.000 0.00 0.00 0.00 3.67
3149 3467 2.239654 TGGAGTTGGCCTTTAGGATCAG 59.760 50.000 3.32 0.00 37.39 2.90
3193 3511 1.154376 GTCGCCGCGCACATAAAAA 60.154 52.632 8.75 0.00 0.00 1.94
3195 3513 3.844355 CGTCGCCGCGCACATAAA 61.844 61.111 8.75 0.00 0.00 1.40
3236 3554 5.513962 GGCCCAAATTTAGGACAAAAATGGA 60.514 40.000 6.86 0.00 34.06 3.41
3244 3562 0.323908 CCCGGCCCAAATTTAGGACA 60.324 55.000 9.31 0.00 0.00 4.02
3245 3563 0.323999 ACCCGGCCCAAATTTAGGAC 60.324 55.000 6.86 2.15 0.00 3.85
3246 3564 0.410270 AACCCGGCCCAAATTTAGGA 59.590 50.000 6.86 0.00 0.00 2.94
3247 3565 1.066502 CAAACCCGGCCCAAATTTAGG 60.067 52.381 0.00 0.00 0.00 2.69
3248 3566 1.674519 GCAAACCCGGCCCAAATTTAG 60.675 52.381 0.00 0.00 0.00 1.85
3260 3578 0.664166 GTTGTGAGCATGCAAACCCG 60.664 55.000 21.98 0.00 0.00 5.28
3263 3581 1.838913 AACGTTGTGAGCATGCAAAC 58.161 45.000 21.98 17.42 0.00 2.93
3282 3600 4.461198 GGTCAGAGGAGGACAAAGAAAAA 58.539 43.478 0.00 0.00 37.00 1.94
3283 3601 3.181443 GGGTCAGAGGAGGACAAAGAAAA 60.181 47.826 0.00 0.00 37.00 2.29
3284 3602 2.372172 GGGTCAGAGGAGGACAAAGAAA 59.628 50.000 0.00 0.00 37.00 2.52
3285 3603 1.978580 GGGTCAGAGGAGGACAAAGAA 59.021 52.381 0.00 0.00 37.00 2.52
3286 3604 1.645710 GGGTCAGAGGAGGACAAAGA 58.354 55.000 0.00 0.00 37.00 2.52
3287 3605 0.247736 CGGGTCAGAGGAGGACAAAG 59.752 60.000 0.00 0.00 37.00 2.77
3288 3606 1.827399 GCGGGTCAGAGGAGGACAAA 61.827 60.000 0.00 0.00 37.00 2.83
3289 3607 2.283529 GCGGGTCAGAGGAGGACAA 61.284 63.158 0.00 0.00 37.00 3.18
3290 3608 2.680352 GCGGGTCAGAGGAGGACA 60.680 66.667 0.00 0.00 37.00 4.02
3291 3609 3.462678 GGCGGGTCAGAGGAGGAC 61.463 72.222 0.00 0.00 34.52 3.85
3292 3610 4.779733 GGGCGGGTCAGAGGAGGA 62.780 72.222 0.00 0.00 0.00 3.71
3302 3620 4.424711 TACTACGGACGGGCGGGT 62.425 66.667 0.00 0.00 0.00 5.28
3303 3621 3.892581 GTACTACGGACGGGCGGG 61.893 72.222 0.00 0.00 0.00 6.13
3304 3622 3.133464 TGTACTACGGACGGGCGG 61.133 66.667 0.00 0.00 0.00 6.13
3305 3623 1.996786 ATGTGTACTACGGACGGGCG 61.997 60.000 0.00 0.00 0.00 6.13
3306 3624 1.024271 TATGTGTACTACGGACGGGC 58.976 55.000 0.00 0.00 0.00 6.13
3307 3625 2.542411 GCTTATGTGTACTACGGACGGG 60.542 54.545 0.00 0.00 0.00 5.28
3308 3626 2.724349 GCTTATGTGTACTACGGACGG 58.276 52.381 0.00 0.00 0.00 4.79
3309 3627 2.369600 CGCTTATGTGTACTACGGACG 58.630 52.381 0.00 0.00 0.00 4.79
3310 3628 2.114825 GCGCTTATGTGTACTACGGAC 58.885 52.381 0.00 0.00 0.00 4.79
3311 3629 1.066002 GGCGCTTATGTGTACTACGGA 59.934 52.381 7.64 0.00 0.00 4.69
3312 3630 1.202325 TGGCGCTTATGTGTACTACGG 60.202 52.381 7.64 0.00 0.00 4.02
3313 3631 2.197792 TGGCGCTTATGTGTACTACG 57.802 50.000 7.64 0.00 0.00 3.51
3314 3632 4.369182 AGAATGGCGCTTATGTGTACTAC 58.631 43.478 7.64 0.00 0.00 2.73
3315 3633 4.341235 AGAGAATGGCGCTTATGTGTACTA 59.659 41.667 7.64 0.00 0.00 1.82
3316 3634 3.133003 AGAGAATGGCGCTTATGTGTACT 59.867 43.478 7.64 0.00 0.00 2.73
3317 3635 3.458189 AGAGAATGGCGCTTATGTGTAC 58.542 45.455 7.64 0.00 0.00 2.90
3318 3636 3.819564 AGAGAATGGCGCTTATGTGTA 57.180 42.857 7.64 0.00 0.00 2.90
3319 3637 2.698855 AGAGAATGGCGCTTATGTGT 57.301 45.000 7.64 0.00 0.00 3.72
3320 3638 2.033407 CGAAGAGAATGGCGCTTATGTG 60.033 50.000 7.64 0.00 36.73 3.21
3321 3639 2.205074 CGAAGAGAATGGCGCTTATGT 58.795 47.619 7.64 0.00 36.73 2.29
3322 3640 1.070309 GCGAAGAGAATGGCGCTTATG 60.070 52.381 7.64 0.00 45.41 1.90
3323 3641 1.221414 GCGAAGAGAATGGCGCTTAT 58.779 50.000 7.64 0.00 45.41 1.73
3324 3642 2.677971 GCGAAGAGAATGGCGCTTA 58.322 52.632 7.64 0.00 45.41 3.09
3325 3643 3.490890 GCGAAGAGAATGGCGCTT 58.509 55.556 7.64 0.00 45.41 4.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.