Multiple sequence alignment - TraesCS3D01G236300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G236300 chr3D 100.000 2561 0 0 1 2561 326704315 326706875 0.000000e+00 4730.0
1 TraesCS3D01G236300 chr7D 95.894 682 27 1 1881 2561 28807356 28808037 0.000000e+00 1103.0
2 TraesCS3D01G236300 chr7D 89.493 809 48 19 1016 1810 28806572 28807357 0.000000e+00 989.0
3 TraesCS3D01G236300 chr7D 95.322 513 20 4 468 977 28806056 28806567 0.000000e+00 811.0
4 TraesCS3D01G236300 chr7D 88.722 266 24 5 464 725 28812622 28812359 1.140000e-83 320.0
5 TraesCS3D01G236300 chr2B 90.286 525 46 3 2041 2561 745526703 745527226 0.000000e+00 682.0
6 TraesCS3D01G236300 chr2B 88.980 245 25 2 469 712 745526064 745526307 4.140000e-78 302.0
7 TraesCS3D01G236300 chr1B 89.866 523 48 3 2041 2559 566668896 566669417 0.000000e+00 667.0
8 TraesCS3D01G236300 chr1B 89.837 246 23 2 468 712 566668268 566668512 5.320000e-82 315.0
9 TraesCS3D01G236300 chr1B 87.963 216 25 1 472 686 566684877 566684662 1.180000e-63 254.0
10 TraesCS3D01G236300 chr1B 97.778 45 1 0 1792 1836 566668547 566668591 7.600000e-11 78.7
11 TraesCS3D01G236300 chr3A 89.414 529 46 6 2041 2561 547989533 547989007 0.000000e+00 658.0
12 TraesCS3D01G236300 chr3A 96.857 350 10 1 1 349 438599643 438599294 3.670000e-163 584.0
13 TraesCS3D01G236300 chr3A 96.190 105 3 1 364 468 438599310 438599207 1.220000e-38 171.0
14 TraesCS3D01G236300 chr3B 96.601 353 5 2 1 349 423816239 423816588 1.710000e-161 579.0
15 TraesCS3D01G236300 chr3B 99.048 105 1 0 364 468 423816572 423816676 3.360000e-44 189.0
16 TraesCS3D01G236300 chr6A 92.787 305 18 4 465 767 6745133 6744831 3.030000e-119 438.0
17 TraesCS3D01G236300 chr6A 92.832 279 9 3 787 1065 6744846 6744579 6.640000e-106 394.0
18 TraesCS3D01G236300 chr4A 91.057 246 20 1 2316 2561 332656583 332656826 5.280000e-87 331.0
19 TraesCS3D01G236300 chr4A 87.900 281 29 4 2041 2317 332653593 332653872 2.460000e-85 326.0
20 TraesCS3D01G236300 chr4A 79.553 313 25 18 624 934 332652884 332653159 1.210000e-43 187.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G236300 chr3D 326704315 326706875 2560 False 4730.000000 4730 100.000000 1 2561 1 chr3D.!!$F1 2560
1 TraesCS3D01G236300 chr7D 28806056 28808037 1981 False 967.666667 1103 93.569667 468 2561 3 chr7D.!!$F1 2093
2 TraesCS3D01G236300 chr2B 745526064 745527226 1162 False 492.000000 682 89.633000 469 2561 2 chr2B.!!$F1 2092
3 TraesCS3D01G236300 chr1B 566668268 566669417 1149 False 353.566667 667 92.493667 468 2559 3 chr1B.!!$F1 2091
4 TraesCS3D01G236300 chr3A 547989007 547989533 526 True 658.000000 658 89.414000 2041 2561 1 chr3A.!!$R1 520
5 TraesCS3D01G236300 chr6A 6744579 6745133 554 True 416.000000 438 92.809500 465 1065 2 chr6A.!!$R1 600
6 TraesCS3D01G236300 chr4A 332652884 332656826 3942 False 281.333333 331 86.170000 624 2561 3 chr4A.!!$F1 1937

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
331 332 0.035458 GGTGGATGGATGGGACGATC 59.965 60.0 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1862 1952 0.034896 ATAGCCTCCATAAACGGCCG 59.965 55.0 26.86 26.86 44.84 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.295119 GGGTGGCCGCGATATCGT 62.295 66.667 24.99 0.00 42.22 3.73
29 30 2.646719 GGTGGCCGCGATATCGTA 59.353 61.111 24.99 5.67 42.22 3.43
30 31 1.443872 GGTGGCCGCGATATCGTAG 60.444 63.158 24.99 18.60 42.22 3.51
31 32 1.577922 GTGGCCGCGATATCGTAGA 59.422 57.895 24.99 3.99 45.75 2.59
32 33 0.454620 GTGGCCGCGATATCGTAGAG 60.455 60.000 24.99 14.13 43.63 2.43
33 34 1.136984 GGCCGCGATATCGTAGAGG 59.863 63.158 24.99 21.67 43.63 3.69
34 35 1.136984 GCCGCGATATCGTAGAGGG 59.863 63.158 24.99 18.17 43.63 4.30
35 36 1.303799 GCCGCGATATCGTAGAGGGA 61.304 60.000 24.99 0.00 43.63 4.20
36 37 0.727970 CCGCGATATCGTAGAGGGAG 59.272 60.000 24.99 7.69 43.63 4.30
37 38 1.675116 CCGCGATATCGTAGAGGGAGA 60.675 57.143 24.99 0.00 43.63 3.71
38 39 1.661617 CGCGATATCGTAGAGGGAGAG 59.338 57.143 24.99 2.43 43.63 3.20
39 40 2.011222 GCGATATCGTAGAGGGAGAGG 58.989 57.143 24.99 0.00 43.63 3.69
40 41 2.634600 CGATATCGTAGAGGGAGAGGG 58.365 57.143 17.06 0.00 43.63 4.30
41 42 2.236644 CGATATCGTAGAGGGAGAGGGA 59.763 54.545 17.06 0.00 43.63 4.20
42 43 3.680475 CGATATCGTAGAGGGAGAGGGAG 60.680 56.522 17.06 0.00 43.63 4.30
43 44 0.774908 ATCGTAGAGGGAGAGGGAGG 59.225 60.000 0.00 0.00 43.63 4.30
44 45 0.327287 TCGTAGAGGGAGAGGGAGGA 60.327 60.000 0.00 0.00 0.00 3.71
45 46 0.109723 CGTAGAGGGAGAGGGAGGAG 59.890 65.000 0.00 0.00 0.00 3.69
46 47 1.525175 GTAGAGGGAGAGGGAGGAGA 58.475 60.000 0.00 0.00 0.00 3.71
47 48 1.144298 GTAGAGGGAGAGGGAGGAGAC 59.856 61.905 0.00 0.00 0.00 3.36
48 49 1.152839 GAGGGAGAGGGAGGAGACG 60.153 68.421 0.00 0.00 0.00 4.18
49 50 1.619975 AGGGAGAGGGAGGAGACGA 60.620 63.158 0.00 0.00 0.00 4.20
50 51 1.152839 GGGAGAGGGAGGAGACGAG 60.153 68.421 0.00 0.00 0.00 4.18
51 52 1.152839 GGAGAGGGAGGAGACGAGG 60.153 68.421 0.00 0.00 0.00 4.63
52 53 1.152839 GAGAGGGAGGAGACGAGGG 60.153 68.421 0.00 0.00 0.00 4.30
53 54 2.123640 GAGGGAGGAGACGAGGGG 60.124 72.222 0.00 0.00 0.00 4.79
54 55 3.742248 GAGGGAGGAGACGAGGGGG 62.742 73.684 0.00 0.00 0.00 5.40
55 56 4.077180 GGGAGGAGACGAGGGGGT 62.077 72.222 0.00 0.00 0.00 4.95
56 57 2.039137 GGAGGAGACGAGGGGGTT 59.961 66.667 0.00 0.00 0.00 4.11
57 58 2.059190 GGAGGAGACGAGGGGGTTC 61.059 68.421 0.00 0.00 0.00 3.62
58 59 1.305046 GAGGAGACGAGGGGGTTCA 60.305 63.158 0.00 0.00 0.00 3.18
59 60 1.305381 AGGAGACGAGGGGGTTCAG 60.305 63.158 0.00 0.00 0.00 3.02
60 61 2.579738 GAGACGAGGGGGTTCAGC 59.420 66.667 0.00 0.00 0.00 4.26
61 62 1.985116 GAGACGAGGGGGTTCAGCT 60.985 63.158 0.00 0.00 0.00 4.24
62 63 1.536662 AGACGAGGGGGTTCAGCTT 60.537 57.895 0.00 0.00 0.00 3.74
63 64 1.079057 GACGAGGGGGTTCAGCTTC 60.079 63.158 0.00 0.00 0.00 3.86
64 65 1.827399 GACGAGGGGGTTCAGCTTCA 61.827 60.000 0.00 0.00 0.00 3.02
65 66 1.201429 ACGAGGGGGTTCAGCTTCAT 61.201 55.000 0.00 0.00 0.00 2.57
66 67 0.745845 CGAGGGGGTTCAGCTTCATG 60.746 60.000 0.00 0.00 0.00 3.07
67 68 0.620556 GAGGGGGTTCAGCTTCATGA 59.379 55.000 0.00 0.00 0.00 3.07
68 69 0.622665 AGGGGGTTCAGCTTCATGAG 59.377 55.000 0.00 0.00 0.00 2.90
69 70 0.394899 GGGGGTTCAGCTTCATGAGG 60.395 60.000 0.00 0.00 0.00 3.86
70 71 0.620556 GGGGTTCAGCTTCATGAGGA 59.379 55.000 9.36 0.00 0.00 3.71
71 72 1.407989 GGGGTTCAGCTTCATGAGGAG 60.408 57.143 9.36 0.00 0.00 3.69
72 73 1.556911 GGGTTCAGCTTCATGAGGAGA 59.443 52.381 9.36 2.71 0.00 3.71
73 74 2.419851 GGGTTCAGCTTCATGAGGAGAG 60.420 54.545 9.36 0.00 0.00 3.20
74 75 2.499289 GGTTCAGCTTCATGAGGAGAGA 59.501 50.000 9.36 0.00 0.00 3.10
75 76 3.520569 GTTCAGCTTCATGAGGAGAGAC 58.479 50.000 9.36 3.92 0.00 3.36
76 77 2.812658 TCAGCTTCATGAGGAGAGACA 58.187 47.619 9.36 0.00 0.00 3.41
77 78 2.759535 TCAGCTTCATGAGGAGAGACAG 59.240 50.000 9.36 0.00 0.00 3.51
78 79 1.481772 AGCTTCATGAGGAGAGACAGC 59.518 52.381 9.36 6.33 0.00 4.40
79 80 1.802136 GCTTCATGAGGAGAGACAGCG 60.802 57.143 9.36 0.00 0.00 5.18
80 81 0.820226 TTCATGAGGAGAGACAGCGG 59.180 55.000 0.00 0.00 0.00 5.52
81 82 1.227205 CATGAGGAGAGACAGCGGC 60.227 63.158 0.00 0.00 0.00 6.53
82 83 1.381056 ATGAGGAGAGACAGCGGCT 60.381 57.895 0.00 0.00 0.00 5.52
83 84 1.674764 ATGAGGAGAGACAGCGGCTG 61.675 60.000 27.43 27.43 37.52 4.85
84 85 3.714871 GAGGAGAGACAGCGGCTGC 62.715 68.421 28.80 20.59 43.24 5.25
85 86 4.828925 GGAGAGACAGCGGCTGCC 62.829 72.222 28.80 19.33 44.31 4.85
86 87 4.828925 GAGAGACAGCGGCTGCCC 62.829 72.222 28.80 20.23 44.31 5.36
120 121 2.677228 CCGAGGATGGCCACCTTT 59.323 61.111 22.78 2.15 37.93 3.11
121 122 1.452108 CCGAGGATGGCCACCTTTC 60.452 63.158 22.78 11.31 37.93 2.62
122 123 1.815421 CGAGGATGGCCACCTTTCG 60.815 63.158 22.78 19.13 37.93 3.46
123 124 2.044946 AGGATGGCCACCTTTCGC 60.045 61.111 8.16 0.00 33.55 4.70
124 125 3.508840 GGATGGCCACCTTTCGCG 61.509 66.667 8.16 0.00 0.00 5.87
125 126 4.179579 GATGGCCACCTTTCGCGC 62.180 66.667 8.16 0.00 0.00 6.86
131 132 4.093952 CACCTTTCGCGCCTGCTG 62.094 66.667 0.00 0.00 39.65 4.41
150 151 3.584052 CCGGACGCGGAGGAGTAG 61.584 72.222 12.47 0.00 0.00 2.57
151 152 2.823147 CGGACGCGGAGGAGTAGT 60.823 66.667 12.47 0.00 0.00 2.73
152 153 2.404995 CGGACGCGGAGGAGTAGTT 61.405 63.158 12.47 0.00 0.00 2.24
153 154 1.139095 GGACGCGGAGGAGTAGTTG 59.861 63.158 12.47 0.00 0.00 3.16
154 155 1.516603 GACGCGGAGGAGTAGTTGC 60.517 63.158 12.47 0.00 0.00 4.17
155 156 2.579787 CGCGGAGGAGTAGTTGCG 60.580 66.667 0.00 0.00 39.57 4.85
156 157 2.202756 GCGGAGGAGTAGTTGCGG 60.203 66.667 0.00 0.00 0.00 5.69
157 158 2.202756 CGGAGGAGTAGTTGCGGC 60.203 66.667 0.00 0.00 0.00 6.53
158 159 2.202756 GGAGGAGTAGTTGCGGCG 60.203 66.667 0.51 0.51 0.00 6.46
159 160 2.202756 GAGGAGTAGTTGCGGCGG 60.203 66.667 9.78 0.00 0.00 6.13
160 161 4.452733 AGGAGTAGTTGCGGCGGC 62.453 66.667 9.78 9.68 40.52 6.53
185 186 3.933722 CTGGGCGGCGGATCTCAT 61.934 66.667 9.78 0.00 0.00 2.90
186 187 3.873026 CTGGGCGGCGGATCTCATC 62.873 68.421 9.78 0.00 0.00 2.92
187 188 3.928779 GGGCGGCGGATCTCATCA 61.929 66.667 9.78 0.00 0.00 3.07
188 189 2.663188 GGCGGCGGATCTCATCAC 60.663 66.667 9.78 0.00 0.00 3.06
189 190 2.663188 GCGGCGGATCTCATCACC 60.663 66.667 9.78 0.00 0.00 4.02
191 192 2.845550 CGGCGGATCTCATCACCGA 61.846 63.158 0.00 0.00 46.96 4.69
192 193 2.739523 CGGCGGATCTCATCACCGAG 62.740 65.000 0.00 0.00 46.96 4.63
195 196 1.369321 GGATCTCATCACCGAGGGC 59.631 63.158 0.00 0.00 33.59 5.19
196 197 1.369321 GATCTCATCACCGAGGGCC 59.631 63.158 0.00 0.00 33.59 5.80
197 198 1.074926 ATCTCATCACCGAGGGCCT 60.075 57.895 5.25 5.25 33.59 5.19
198 199 1.118356 ATCTCATCACCGAGGGCCTC 61.118 60.000 24.06 24.06 33.59 4.70
199 200 2.038813 TCATCACCGAGGGCCTCA 59.961 61.111 31.69 14.01 0.00 3.86
200 201 1.383109 TCATCACCGAGGGCCTCAT 60.383 57.895 31.69 17.40 0.00 2.90
201 202 1.070445 CATCACCGAGGGCCTCATC 59.930 63.158 31.69 7.82 0.00 2.92
202 203 2.502492 ATCACCGAGGGCCTCATCG 61.502 63.158 31.69 19.47 45.42 3.84
203 204 3.461773 CACCGAGGGCCTCATCGT 61.462 66.667 31.69 20.92 44.51 3.73
204 205 3.148279 ACCGAGGGCCTCATCGTC 61.148 66.667 31.69 6.23 44.51 4.20
205 206 4.271816 CCGAGGGCCTCATCGTCG 62.272 72.222 31.69 18.00 44.51 5.12
206 207 4.933064 CGAGGGCCTCATCGTCGC 62.933 72.222 31.69 4.37 41.57 5.19
207 208 3.532155 GAGGGCCTCATCGTCGCT 61.532 66.667 28.55 0.00 0.00 4.93
208 209 3.781770 GAGGGCCTCATCGTCGCTG 62.782 68.421 28.55 0.00 0.00 5.18
209 210 4.899239 GGGCCTCATCGTCGCTGG 62.899 72.222 0.84 0.00 0.00 4.85
211 212 4.521062 GCCTCATCGTCGCTGGCT 62.521 66.667 9.30 0.00 40.36 4.75
212 213 2.185350 CCTCATCGTCGCTGGCTT 59.815 61.111 0.00 0.00 0.00 4.35
213 214 2.169789 CCTCATCGTCGCTGGCTTG 61.170 63.158 0.00 0.00 0.00 4.01
214 215 2.125552 TCATCGTCGCTGGCTTGG 60.126 61.111 0.00 0.00 0.00 3.61
215 216 3.197790 CATCGTCGCTGGCTTGGG 61.198 66.667 0.00 0.00 0.00 4.12
227 228 4.020617 CTTGGGCGGCCTGTGAGA 62.021 66.667 29.87 4.11 0.00 3.27
228 229 3.329889 TTGGGCGGCCTGTGAGAT 61.330 61.111 29.87 0.00 0.00 2.75
229 230 3.329542 TTGGGCGGCCTGTGAGATC 62.330 63.158 29.87 0.00 0.00 2.75
230 231 3.474570 GGGCGGCCTGTGAGATCT 61.475 66.667 22.87 0.00 0.00 2.75
231 232 2.202987 GGCGGCCTGTGAGATCTG 60.203 66.667 12.87 0.00 0.00 2.90
232 233 2.202987 GCGGCCTGTGAGATCTGG 60.203 66.667 0.00 0.00 0.00 3.86
233 234 2.503061 CGGCCTGTGAGATCTGGG 59.497 66.667 0.00 0.00 0.00 4.45
234 235 2.362369 CGGCCTGTGAGATCTGGGT 61.362 63.158 0.00 0.00 0.00 4.51
235 236 1.524482 GGCCTGTGAGATCTGGGTC 59.476 63.158 0.00 0.00 0.00 4.46
236 237 1.142748 GCCTGTGAGATCTGGGTCG 59.857 63.158 0.00 0.00 0.00 4.79
237 238 1.323271 GCCTGTGAGATCTGGGTCGA 61.323 60.000 0.00 0.00 0.00 4.20
238 239 0.457851 CCTGTGAGATCTGGGTCGAC 59.542 60.000 7.13 7.13 0.00 4.20
239 240 0.099613 CTGTGAGATCTGGGTCGACG 59.900 60.000 9.92 0.00 0.00 5.12
240 241 1.313091 TGTGAGATCTGGGTCGACGG 61.313 60.000 9.92 2.47 0.00 4.79
241 242 1.030488 GTGAGATCTGGGTCGACGGA 61.030 60.000 9.92 8.14 0.00 4.69
242 243 0.106669 TGAGATCTGGGTCGACGGAT 60.107 55.000 9.92 12.54 39.12 4.18
243 244 0.312416 GAGATCTGGGTCGACGGATG 59.688 60.000 17.61 6.20 36.62 3.51
244 245 1.300233 GATCTGGGTCGACGGATGC 60.300 63.158 17.61 1.78 36.62 3.91
245 246 3.138930 ATCTGGGTCGACGGATGCG 62.139 63.158 9.92 4.58 35.22 4.73
246 247 3.822192 CTGGGTCGACGGATGCGA 61.822 66.667 15.49 0.00 35.08 5.10
247 248 3.350909 CTGGGTCGACGGATGCGAA 62.351 63.158 15.49 0.00 39.73 4.70
248 249 2.582498 GGGTCGACGGATGCGAAG 60.582 66.667 15.49 6.69 39.73 3.79
249 250 2.582498 GGTCGACGGATGCGAAGG 60.582 66.667 15.49 1.52 39.73 3.46
250 251 2.582498 GTCGACGGATGCGAAGGG 60.582 66.667 15.49 0.00 39.73 3.95
251 252 3.833645 TCGACGGATGCGAAGGGG 61.834 66.667 15.49 0.00 34.45 4.79
252 253 3.833645 CGACGGATGCGAAGGGGA 61.834 66.667 15.49 0.00 0.00 4.81
253 254 2.107141 GACGGATGCGAAGGGGAG 59.893 66.667 15.49 0.00 0.00 4.30
254 255 2.363795 ACGGATGCGAAGGGGAGA 60.364 61.111 15.49 0.00 0.00 3.71
255 256 1.749334 GACGGATGCGAAGGGGAGAT 61.749 60.000 15.49 0.00 0.00 2.75
256 257 1.301244 CGGATGCGAAGGGGAGATG 60.301 63.158 0.00 0.00 0.00 2.90
257 258 1.832912 GGATGCGAAGGGGAGATGT 59.167 57.895 0.00 0.00 0.00 3.06
258 259 0.533755 GGATGCGAAGGGGAGATGTG 60.534 60.000 0.00 0.00 0.00 3.21
259 260 0.533755 GATGCGAAGGGGAGATGTGG 60.534 60.000 0.00 0.00 0.00 4.17
260 261 0.982852 ATGCGAAGGGGAGATGTGGA 60.983 55.000 0.00 0.00 0.00 4.02
261 262 1.153349 GCGAAGGGGAGATGTGGAC 60.153 63.158 0.00 0.00 0.00 4.02
262 263 1.141881 CGAAGGGGAGATGTGGACG 59.858 63.158 0.00 0.00 0.00 4.79
263 264 1.522569 GAAGGGGAGATGTGGACGG 59.477 63.158 0.00 0.00 0.00 4.79
264 265 1.972660 GAAGGGGAGATGTGGACGGG 61.973 65.000 0.00 0.00 0.00 5.28
265 266 4.176752 GGGGAGATGTGGACGGGC 62.177 72.222 0.00 0.00 0.00 6.13
266 267 4.530857 GGGAGATGTGGACGGGCG 62.531 72.222 0.00 0.00 0.00 6.13
267 268 4.530857 GGAGATGTGGACGGGCGG 62.531 72.222 0.00 0.00 0.00 6.13
283 284 3.058160 GGCGGCTGCTGATGTGTT 61.058 61.111 18.85 0.00 42.25 3.32
284 285 2.177531 GCGGCTGCTGATGTGTTG 59.822 61.111 13.72 0.00 38.39 3.33
285 286 2.177531 CGGCTGCTGATGTGTTGC 59.822 61.111 1.17 0.00 0.00 4.17
286 287 2.330372 CGGCTGCTGATGTGTTGCT 61.330 57.895 1.17 0.00 0.00 3.91
287 288 1.020861 CGGCTGCTGATGTGTTGCTA 61.021 55.000 1.17 0.00 0.00 3.49
288 289 1.386533 GGCTGCTGATGTGTTGCTAT 58.613 50.000 0.00 0.00 0.00 2.97
289 290 1.747355 GGCTGCTGATGTGTTGCTATT 59.253 47.619 0.00 0.00 0.00 1.73
290 291 2.479049 GGCTGCTGATGTGTTGCTATTG 60.479 50.000 0.00 0.00 0.00 1.90
291 292 2.163010 GCTGCTGATGTGTTGCTATTGT 59.837 45.455 0.00 0.00 0.00 2.71
292 293 3.374988 GCTGCTGATGTGTTGCTATTGTA 59.625 43.478 0.00 0.00 0.00 2.41
293 294 4.036027 GCTGCTGATGTGTTGCTATTGTAT 59.964 41.667 0.00 0.00 0.00 2.29
294 295 5.237127 GCTGCTGATGTGTTGCTATTGTATA 59.763 40.000 0.00 0.00 0.00 1.47
295 296 6.565435 GCTGCTGATGTGTTGCTATTGTATAG 60.565 42.308 0.00 0.00 0.00 1.31
296 297 6.581712 TGCTGATGTGTTGCTATTGTATAGA 58.418 36.000 0.00 0.00 0.00 1.98
297 298 6.479990 TGCTGATGTGTTGCTATTGTATAGAC 59.520 38.462 0.00 0.00 0.00 2.59
298 299 6.346120 GCTGATGTGTTGCTATTGTATAGACG 60.346 42.308 0.00 0.00 0.00 4.18
299 300 5.983118 TGATGTGTTGCTATTGTATAGACGG 59.017 40.000 0.00 0.00 0.00 4.79
300 301 5.585820 TGTGTTGCTATTGTATAGACGGA 57.414 39.130 0.00 0.00 0.00 4.69
301 302 5.588240 TGTGTTGCTATTGTATAGACGGAG 58.412 41.667 0.00 0.00 0.00 4.63
302 303 4.444720 GTGTTGCTATTGTATAGACGGAGC 59.555 45.833 0.00 2.19 0.00 4.70
303 304 3.936372 TGCTATTGTATAGACGGAGCC 57.064 47.619 5.86 0.00 0.00 4.70
304 305 3.227614 TGCTATTGTATAGACGGAGCCA 58.772 45.455 5.86 0.00 0.00 4.75
305 306 3.255888 TGCTATTGTATAGACGGAGCCAG 59.744 47.826 5.86 0.00 0.00 4.85
306 307 2.821991 ATTGTATAGACGGAGCCAGC 57.178 50.000 0.00 0.00 0.00 4.85
307 308 1.480789 TTGTATAGACGGAGCCAGCA 58.519 50.000 0.00 0.00 0.00 4.41
308 309 1.480789 TGTATAGACGGAGCCAGCAA 58.519 50.000 0.00 0.00 0.00 3.91
309 310 1.828595 TGTATAGACGGAGCCAGCAAA 59.171 47.619 0.00 0.00 0.00 3.68
310 311 2.159099 TGTATAGACGGAGCCAGCAAAG 60.159 50.000 0.00 0.00 0.00 2.77
311 312 0.905357 ATAGACGGAGCCAGCAAAGT 59.095 50.000 0.00 0.00 0.00 2.66
312 313 0.037326 TAGACGGAGCCAGCAAAGTG 60.037 55.000 0.00 0.00 0.00 3.16
313 314 2.281761 ACGGAGCCAGCAAAGTGG 60.282 61.111 0.00 0.00 41.01 4.00
314 315 2.281761 CGGAGCCAGCAAAGTGGT 60.282 61.111 0.00 0.00 40.09 4.16
315 316 2.620112 CGGAGCCAGCAAAGTGGTG 61.620 63.158 0.46 0.46 44.79 4.17
321 322 3.344703 CAGCAAAGTGGTGGATGGA 57.655 52.632 0.00 0.00 41.77 3.41
322 323 1.843368 CAGCAAAGTGGTGGATGGAT 58.157 50.000 0.00 0.00 41.77 3.41
323 324 1.475280 CAGCAAAGTGGTGGATGGATG 59.525 52.381 0.00 0.00 41.77 3.51
324 325 0.819582 GCAAAGTGGTGGATGGATGG 59.180 55.000 0.00 0.00 0.00 3.51
325 326 1.477553 CAAAGTGGTGGATGGATGGG 58.522 55.000 0.00 0.00 0.00 4.00
326 327 1.005805 CAAAGTGGTGGATGGATGGGA 59.994 52.381 0.00 0.00 0.00 4.37
327 328 0.625849 AAGTGGTGGATGGATGGGAC 59.374 55.000 0.00 0.00 0.00 4.46
328 329 1.153168 GTGGTGGATGGATGGGACG 60.153 63.158 0.00 0.00 0.00 4.79
329 330 1.306568 TGGTGGATGGATGGGACGA 60.307 57.895 0.00 0.00 0.00 4.20
330 331 0.694105 TGGTGGATGGATGGGACGAT 60.694 55.000 0.00 0.00 0.00 3.73
331 332 0.035458 GGTGGATGGATGGGACGATC 59.965 60.000 0.00 0.00 0.00 3.69
332 333 1.051812 GTGGATGGATGGGACGATCT 58.948 55.000 0.00 0.00 0.00 2.75
333 334 2.248248 GTGGATGGATGGGACGATCTA 58.752 52.381 0.00 0.00 0.00 1.98
334 335 2.632996 GTGGATGGATGGGACGATCTAA 59.367 50.000 0.00 0.00 0.00 2.10
335 336 3.071023 GTGGATGGATGGGACGATCTAAA 59.929 47.826 0.00 0.00 0.00 1.85
336 337 3.071023 TGGATGGATGGGACGATCTAAAC 59.929 47.826 0.00 0.00 0.00 2.01
337 338 3.071023 GGATGGATGGGACGATCTAAACA 59.929 47.826 0.00 0.00 0.00 2.83
338 339 3.819564 TGGATGGGACGATCTAAACAG 57.180 47.619 0.00 0.00 0.00 3.16
339 340 3.104512 TGGATGGGACGATCTAAACAGT 58.895 45.455 0.00 0.00 0.00 3.55
340 341 4.283337 TGGATGGGACGATCTAAACAGTA 58.717 43.478 0.00 0.00 0.00 2.74
341 342 4.712829 TGGATGGGACGATCTAAACAGTAA 59.287 41.667 0.00 0.00 0.00 2.24
342 343 5.188163 TGGATGGGACGATCTAAACAGTAAA 59.812 40.000 0.00 0.00 0.00 2.01
343 344 5.753921 GGATGGGACGATCTAAACAGTAAAG 59.246 44.000 0.00 0.00 0.00 1.85
344 345 5.733620 TGGGACGATCTAAACAGTAAAGT 57.266 39.130 0.00 0.00 0.00 2.66
345 346 6.105397 TGGGACGATCTAAACAGTAAAGTT 57.895 37.500 0.00 0.00 0.00 2.66
346 347 5.929992 TGGGACGATCTAAACAGTAAAGTTG 59.070 40.000 0.00 0.00 0.00 3.16
347 348 5.930569 GGGACGATCTAAACAGTAAAGTTGT 59.069 40.000 0.00 0.00 0.00 3.32
348 349 6.426025 GGGACGATCTAAACAGTAAAGTTGTT 59.574 38.462 0.00 0.00 40.30 2.83
349 350 7.041576 GGGACGATCTAAACAGTAAAGTTGTTT 60.042 37.037 8.23 8.23 46.95 2.83
350 351 8.340443 GGACGATCTAAACAGTAAAGTTGTTTT 58.660 33.333 8.43 0.00 44.04 2.43
351 352 9.712359 GACGATCTAAACAGTAAAGTTGTTTTT 57.288 29.630 8.43 0.00 44.04 1.94
377 378 7.988904 TTTTGACGGGTAAACAATAAAGTTG 57.011 32.000 0.00 0.00 0.00 3.16
378 379 6.696441 TTGACGGGTAAACAATAAAGTTGT 57.304 33.333 0.00 0.00 0.00 3.32
379 380 6.696441 TGACGGGTAAACAATAAAGTTGTT 57.304 33.333 0.63 0.63 43.72 2.83
380 381 7.798596 TGACGGGTAAACAATAAAGTTGTTA 57.201 32.000 6.59 0.00 41.30 2.41
381 382 7.863666 TGACGGGTAAACAATAAAGTTGTTAG 58.136 34.615 6.59 0.98 41.30 2.34
382 383 6.671190 ACGGGTAAACAATAAAGTTGTTAGC 58.329 36.000 6.59 3.60 41.30 3.09
383 384 6.262720 ACGGGTAAACAATAAAGTTGTTAGCA 59.737 34.615 6.59 0.00 41.30 3.49
384 385 7.140048 CGGGTAAACAATAAAGTTGTTAGCAA 58.860 34.615 6.59 0.00 41.30 3.91
385 386 7.648510 CGGGTAAACAATAAAGTTGTTAGCAAA 59.351 33.333 6.59 0.00 41.30 3.68
386 387 9.315525 GGGTAAACAATAAAGTTGTTAGCAAAA 57.684 29.630 6.59 0.00 41.30 2.44
390 391 8.432110 AACAATAAAGTTGTTAGCAAAAAGGG 57.568 30.769 4.49 0.00 40.47 3.95
391 392 7.561251 ACAATAAAGTTGTTAGCAAAAAGGGT 58.439 30.769 0.00 0.00 36.22 4.34
392 393 8.044309 ACAATAAAGTTGTTAGCAAAAAGGGTT 58.956 29.630 0.00 0.00 36.22 4.11
393 394 8.888716 CAATAAAGTTGTTAGCAAAAAGGGTTT 58.111 29.630 0.00 0.00 36.22 3.27
394 395 6.735678 AAAGTTGTTAGCAAAAAGGGTTTG 57.264 33.333 0.00 0.00 36.22 2.93
395 396 4.765273 AGTTGTTAGCAAAAAGGGTTTGG 58.235 39.130 0.00 0.00 36.22 3.28
396 397 3.828875 TGTTAGCAAAAAGGGTTTGGG 57.171 42.857 1.38 0.00 0.00 4.12
397 398 2.436173 TGTTAGCAAAAAGGGTTTGGGG 59.564 45.455 1.38 0.00 0.00 4.96
398 399 1.723288 TAGCAAAAAGGGTTTGGGGG 58.277 50.000 1.38 0.00 0.00 5.40
399 400 0.327095 AGCAAAAAGGGTTTGGGGGT 60.327 50.000 1.38 0.00 0.00 4.95
400 401 0.548989 GCAAAAAGGGTTTGGGGGTT 59.451 50.000 1.38 0.00 0.00 4.11
401 402 1.064314 GCAAAAAGGGTTTGGGGGTTT 60.064 47.619 1.38 0.00 0.00 3.27
402 403 2.925724 CAAAAAGGGTTTGGGGGTTTC 58.074 47.619 0.00 0.00 0.00 2.78
403 404 1.124780 AAAAGGGTTTGGGGGTTTCG 58.875 50.000 0.00 0.00 0.00 3.46
404 405 0.262285 AAAGGGTTTGGGGGTTTCGA 59.738 50.000 0.00 0.00 0.00 3.71
405 406 0.178973 AAGGGTTTGGGGGTTTCGAG 60.179 55.000 0.00 0.00 0.00 4.04
406 407 1.063654 AGGGTTTGGGGGTTTCGAGA 61.064 55.000 0.00 0.00 0.00 4.04
407 408 0.039180 GGGTTTGGGGGTTTCGAGAT 59.961 55.000 0.00 0.00 0.00 2.75
408 409 1.282738 GGGTTTGGGGGTTTCGAGATA 59.717 52.381 0.00 0.00 0.00 1.98
409 410 2.291089 GGGTTTGGGGGTTTCGAGATAA 60.291 50.000 0.00 0.00 0.00 1.75
410 411 2.751259 GGTTTGGGGGTTTCGAGATAAC 59.249 50.000 0.00 0.00 0.00 1.89
411 412 2.751259 GTTTGGGGGTTTCGAGATAACC 59.249 50.000 8.71 8.71 43.47 2.85
412 413 1.659022 TGGGGGTTTCGAGATAACCA 58.341 50.000 17.12 7.77 45.51 3.67
413 414 2.201830 TGGGGGTTTCGAGATAACCAT 58.798 47.619 17.12 0.00 45.51 3.55
414 415 2.578940 TGGGGGTTTCGAGATAACCATT 59.421 45.455 17.12 0.00 45.51 3.16
415 416 3.010808 TGGGGGTTTCGAGATAACCATTT 59.989 43.478 17.12 0.00 45.51 2.32
416 417 3.630769 GGGGGTTTCGAGATAACCATTTC 59.369 47.826 17.12 2.38 45.51 2.17
417 418 3.630769 GGGGTTTCGAGATAACCATTTCC 59.369 47.826 17.12 7.15 45.51 3.13
418 419 3.311596 GGGTTTCGAGATAACCATTTCCG 59.688 47.826 17.12 0.00 45.51 4.30
419 420 4.186159 GGTTTCGAGATAACCATTTCCGA 58.814 43.478 11.77 0.00 43.63 4.55
420 421 4.814771 GGTTTCGAGATAACCATTTCCGAT 59.185 41.667 11.77 0.00 43.63 4.18
421 422 5.050295 GGTTTCGAGATAACCATTTCCGATC 60.050 44.000 11.77 0.00 43.63 3.69
422 423 4.252971 TCGAGATAACCATTTCCGATCC 57.747 45.455 0.00 0.00 0.00 3.36
423 424 3.639561 TCGAGATAACCATTTCCGATCCA 59.360 43.478 0.00 0.00 0.00 3.41
424 425 4.100344 TCGAGATAACCATTTCCGATCCAA 59.900 41.667 0.00 0.00 0.00 3.53
425 426 4.211374 CGAGATAACCATTTCCGATCCAAC 59.789 45.833 0.00 0.00 0.00 3.77
426 427 5.368989 GAGATAACCATTTCCGATCCAACT 58.631 41.667 0.00 0.00 0.00 3.16
427 428 5.755849 AGATAACCATTTCCGATCCAACTT 58.244 37.500 0.00 0.00 0.00 2.66
428 429 6.187682 AGATAACCATTTCCGATCCAACTTT 58.812 36.000 0.00 0.00 0.00 2.66
429 430 6.663523 AGATAACCATTTCCGATCCAACTTTT 59.336 34.615 0.00 0.00 0.00 2.27
430 431 4.783764 ACCATTTCCGATCCAACTTTTC 57.216 40.909 0.00 0.00 0.00 2.29
431 432 3.509967 ACCATTTCCGATCCAACTTTTCC 59.490 43.478 0.00 0.00 0.00 3.13
432 433 3.427503 CCATTTCCGATCCAACTTTTCCG 60.428 47.826 0.00 0.00 0.00 4.30
433 434 1.816074 TTCCGATCCAACTTTTCCGG 58.184 50.000 0.00 0.00 38.41 5.14
434 435 0.035820 TCCGATCCAACTTTTCCGGG 60.036 55.000 0.00 0.00 37.72 5.73
435 436 0.035820 CCGATCCAACTTTTCCGGGA 60.036 55.000 0.00 0.00 33.94 5.14
436 437 1.408266 CCGATCCAACTTTTCCGGGAT 60.408 52.381 0.00 0.00 42.66 3.85
437 438 2.365582 CGATCCAACTTTTCCGGGATT 58.634 47.619 0.00 0.00 40.15 3.01
438 439 2.752903 CGATCCAACTTTTCCGGGATTT 59.247 45.455 0.00 0.00 40.15 2.17
439 440 3.192633 CGATCCAACTTTTCCGGGATTTT 59.807 43.478 0.00 0.00 40.15 1.82
440 441 4.321675 CGATCCAACTTTTCCGGGATTTTT 60.322 41.667 0.00 0.00 40.15 1.94
441 442 4.594123 TCCAACTTTTCCGGGATTTTTC 57.406 40.909 0.00 0.00 0.00 2.29
442 443 4.219919 TCCAACTTTTCCGGGATTTTTCT 58.780 39.130 0.00 0.00 0.00 2.52
443 444 4.651962 TCCAACTTTTCCGGGATTTTTCTT 59.348 37.500 0.00 0.00 0.00 2.52
444 445 5.129650 TCCAACTTTTCCGGGATTTTTCTTT 59.870 36.000 0.00 0.00 0.00 2.52
445 446 5.465390 CCAACTTTTCCGGGATTTTTCTTTC 59.535 40.000 0.00 0.00 0.00 2.62
446 447 5.209818 ACTTTTCCGGGATTTTTCTTTCC 57.790 39.130 0.00 0.00 0.00 3.13
447 448 4.899457 ACTTTTCCGGGATTTTTCTTTCCT 59.101 37.500 0.00 0.00 32.34 3.36
448 449 6.072649 ACTTTTCCGGGATTTTTCTTTCCTA 58.927 36.000 0.00 0.00 32.34 2.94
449 450 6.724441 ACTTTTCCGGGATTTTTCTTTCCTAT 59.276 34.615 0.00 0.00 32.34 2.57
450 451 6.524101 TTTCCGGGATTTTTCTTTCCTATG 57.476 37.500 0.00 0.00 32.34 2.23
451 452 5.444744 TCCGGGATTTTTCTTTCCTATGA 57.555 39.130 0.00 0.00 32.34 2.15
452 453 5.437060 TCCGGGATTTTTCTTTCCTATGAG 58.563 41.667 0.00 0.00 32.34 2.90
453 454 5.045140 TCCGGGATTTTTCTTTCCTATGAGT 60.045 40.000 0.00 0.00 32.34 3.41
454 455 6.157297 TCCGGGATTTTTCTTTCCTATGAGTA 59.843 38.462 0.00 0.00 32.34 2.59
455 456 6.998673 CCGGGATTTTTCTTTCCTATGAGTAT 59.001 38.462 0.00 0.00 32.34 2.12
456 457 8.154856 CCGGGATTTTTCTTTCCTATGAGTATA 58.845 37.037 0.00 0.00 32.34 1.47
457 458 8.989980 CGGGATTTTTCTTTCCTATGAGTATAC 58.010 37.037 0.00 0.00 32.34 1.47
458 459 9.286170 GGGATTTTTCTTTCCTATGAGTATACC 57.714 37.037 0.00 0.00 32.34 2.73
483 484 8.351461 CCTTTTAAAAAGACGTAAATACACCCA 58.649 33.333 1.66 0.00 0.00 4.51
484 485 9.902196 CTTTTAAAAAGACGTAAATACACCCAT 57.098 29.630 1.66 0.00 0.00 4.00
555 557 2.229792 ACGCATTTGTGGTCACTGAAT 58.770 42.857 2.66 1.15 0.00 2.57
680 682 3.947841 GTGCGCGGTCACTTTGCA 61.948 61.111 8.83 0.00 34.29 4.08
795 799 2.234908 CTCCCCTCGTTCACAAATCTCT 59.765 50.000 0.00 0.00 0.00 3.10
892 896 2.160205 CAGTTAGGTGAGTCCTCGTCA 58.840 52.381 0.00 0.00 44.42 4.35
999 1003 3.219928 GCGCGATGGAGAGGAGGA 61.220 66.667 12.10 0.00 0.00 3.71
1001 1005 2.045280 CGCGATGGAGAGGAGGAAT 58.955 57.895 0.00 0.00 0.00 3.01
1002 1006 0.319383 CGCGATGGAGAGGAGGAATG 60.319 60.000 0.00 0.00 0.00 2.67
1004 1008 1.709578 CGATGGAGAGGAGGAATGGA 58.290 55.000 0.00 0.00 0.00 3.41
1005 1009 2.042464 CGATGGAGAGGAGGAATGGAA 58.958 52.381 0.00 0.00 0.00 3.53
1006 1010 2.036992 CGATGGAGAGGAGGAATGGAAG 59.963 54.545 0.00 0.00 0.00 3.46
1007 1011 1.885049 TGGAGAGGAGGAATGGAAGG 58.115 55.000 0.00 0.00 0.00 3.46
1008 1012 0.472044 GGAGAGGAGGAATGGAAGGC 59.528 60.000 0.00 0.00 0.00 4.35
1009 1013 0.472044 GAGAGGAGGAATGGAAGGCC 59.528 60.000 0.00 0.00 0.00 5.19
1073 1077 2.662006 TCTCCACTCTGAATCTTGCG 57.338 50.000 0.00 0.00 0.00 4.85
1125 1129 6.374417 TTTGGTTTTAGGTAGATGAGCTCT 57.626 37.500 16.19 0.00 37.09 4.09
1127 1131 5.023452 TGGTTTTAGGTAGATGAGCTCTCA 58.977 41.667 16.19 1.67 44.59 3.27
1147 1151 1.551883 AGAATGTGATTTTGGGCTGCC 59.448 47.619 11.05 11.05 0.00 4.85
1154 1158 2.165437 TGATTTTGGGCTGCCGAAATAC 59.835 45.455 26.01 21.57 34.88 1.89
1185 1189 1.474330 CCAGTTTAATGGGGTGGAGC 58.526 55.000 0.00 0.00 36.64 4.70
1222 1226 1.873591 CGGCCATGTAATAAGTCCAGC 59.126 52.381 2.24 0.00 0.00 4.85
1237 1241 2.661866 AGCTCGTCGTGTGGCAAC 60.662 61.111 0.00 0.00 0.00 4.17
1249 1253 3.913855 TGGCAACAGAAGGGAACAA 57.086 47.368 0.00 0.00 46.17 2.83
1268 1272 6.758416 GGAACAATAGAAGATTTTTGGGATGC 59.242 38.462 0.00 0.00 0.00 3.91
1412 1416 4.296044 AGAATGGAAGGGAAGGGAAAAGAT 59.704 41.667 0.00 0.00 0.00 2.40
1418 1422 5.958380 GGAAGGGAAGGGAAAAGATTGTAAT 59.042 40.000 0.00 0.00 0.00 1.89
1488 1492 0.392327 GGGAAGCAGAGAAGCAGTCC 60.392 60.000 0.00 0.00 39.15 3.85
1544 1548 1.372087 GCAAGGATTCACAGGGAGCG 61.372 60.000 0.00 0.00 0.00 5.03
1545 1549 0.250234 CAAGGATTCACAGGGAGCGA 59.750 55.000 0.00 0.00 0.00 4.93
1546 1550 0.250513 AAGGATTCACAGGGAGCGAC 59.749 55.000 0.00 0.00 0.00 5.19
1596 1600 4.072131 GTTGGCAGTAGGAACATGAAAGA 58.928 43.478 0.00 0.00 0.00 2.52
1620 1624 8.552469 GATGTAATCTGTGTCATTATGTTTGC 57.448 34.615 0.00 0.00 41.17 3.68
1621 1625 7.446001 TGTAATCTGTGTCATTATGTTTGCA 57.554 32.000 0.00 0.00 0.00 4.08
1622 1626 8.054152 TGTAATCTGTGTCATTATGTTTGCAT 57.946 30.769 0.00 0.00 39.03 3.96
1623 1627 8.522003 TGTAATCTGTGTCATTATGTTTGCATT 58.478 29.630 0.00 0.00 36.58 3.56
1624 1628 9.357652 GTAATCTGTGTCATTATGTTTGCATTT 57.642 29.630 0.00 0.00 36.58 2.32
1625 1629 8.836268 AATCTGTGTCATTATGTTTGCATTTT 57.164 26.923 0.00 0.00 36.58 1.82
1626 1630 7.640616 TCTGTGTCATTATGTTTGCATTTTG 57.359 32.000 0.00 0.00 36.58 2.44
1627 1631 7.208777 TCTGTGTCATTATGTTTGCATTTTGT 58.791 30.769 0.00 0.00 36.58 2.83
1628 1632 8.355913 TCTGTGTCATTATGTTTGCATTTTGTA 58.644 29.630 0.00 0.00 36.58 2.41
1629 1633 8.518151 TGTGTCATTATGTTTGCATTTTGTAG 57.482 30.769 0.00 0.00 36.58 2.74
1630 1634 8.355913 TGTGTCATTATGTTTGCATTTTGTAGA 58.644 29.630 0.00 0.00 36.58 2.59
1631 1635 9.357652 GTGTCATTATGTTTGCATTTTGTAGAT 57.642 29.630 0.00 0.00 36.58 1.98
1632 1636 9.356433 TGTCATTATGTTTGCATTTTGTAGATG 57.644 29.630 0.00 0.00 36.58 2.90
1633 1637 9.571810 GTCATTATGTTTGCATTTTGTAGATGA 57.428 29.630 0.00 0.00 36.58 2.92
1638 1642 8.697846 ATGTTTGCATTTTGTAGATGATGAAG 57.302 30.769 0.00 0.00 29.54 3.02
1639 1643 7.884257 TGTTTGCATTTTGTAGATGATGAAGA 58.116 30.769 0.00 0.00 0.00 2.87
1640 1644 8.024865 TGTTTGCATTTTGTAGATGATGAAGAG 58.975 33.333 0.00 0.00 0.00 2.85
1641 1645 6.127810 TGCATTTTGTAGATGATGAAGAGC 57.872 37.500 0.00 0.00 0.00 4.09
1642 1646 5.203370 GCATTTTGTAGATGATGAAGAGCG 58.797 41.667 0.00 0.00 0.00 5.03
1643 1647 5.007039 GCATTTTGTAGATGATGAAGAGCGA 59.993 40.000 0.00 0.00 0.00 4.93
1644 1648 6.647569 CATTTTGTAGATGATGAAGAGCGAG 58.352 40.000 0.00 0.00 0.00 5.03
1645 1649 3.998099 TGTAGATGATGAAGAGCGAGG 57.002 47.619 0.00 0.00 0.00 4.63
1646 1650 3.291584 TGTAGATGATGAAGAGCGAGGT 58.708 45.455 0.00 0.00 0.00 3.85
1647 1651 3.701542 TGTAGATGATGAAGAGCGAGGTT 59.298 43.478 0.00 0.00 0.00 3.50
1648 1652 3.176552 AGATGATGAAGAGCGAGGTTG 57.823 47.619 0.00 0.00 0.00 3.77
1649 1653 2.762887 AGATGATGAAGAGCGAGGTTGA 59.237 45.455 0.00 0.00 0.00 3.18
1703 1707 3.503363 TGCAATGTGACACTTTCTGGATC 59.497 43.478 7.20 0.00 0.00 3.36
1704 1708 3.503363 GCAATGTGACACTTTCTGGATCA 59.497 43.478 7.20 0.00 0.00 2.92
1705 1709 4.022935 GCAATGTGACACTTTCTGGATCAA 60.023 41.667 7.20 0.00 0.00 2.57
1706 1710 5.336213 GCAATGTGACACTTTCTGGATCAAT 60.336 40.000 7.20 0.00 0.00 2.57
1707 1711 6.127925 GCAATGTGACACTTTCTGGATCAATA 60.128 38.462 7.20 0.00 0.00 1.90
1828 1918 8.762481 TGAAGATAGTGGCTACTGAACTATAA 57.238 34.615 13.76 0.00 37.27 0.98
1835 1925 5.634020 GTGGCTACTGAACTATAAATAGCGG 59.366 44.000 0.00 0.00 36.68 5.52
1836 1926 5.537295 TGGCTACTGAACTATAAATAGCGGA 59.463 40.000 0.00 0.00 36.68 5.54
1837 1927 5.862860 GGCTACTGAACTATAAATAGCGGAC 59.137 44.000 0.00 0.00 36.68 4.79
1838 1928 5.568296 GCTACTGAACTATAAATAGCGGACG 59.432 44.000 0.00 0.00 33.68 4.79
1839 1929 5.762825 ACTGAACTATAAATAGCGGACGA 57.237 39.130 0.00 0.00 33.68 4.20
1840 1930 6.140303 ACTGAACTATAAATAGCGGACGAA 57.860 37.500 0.00 0.00 33.68 3.85
1841 1931 6.567050 ACTGAACTATAAATAGCGGACGAAA 58.433 36.000 0.00 0.00 33.68 3.46
1842 1932 6.696148 ACTGAACTATAAATAGCGGACGAAAG 59.304 38.462 0.00 0.00 33.68 2.62
1843 1933 5.461078 TGAACTATAAATAGCGGACGAAAGC 59.539 40.000 0.00 0.00 33.68 3.51
1844 1934 5.197682 ACTATAAATAGCGGACGAAAGCT 57.802 39.130 0.00 8.13 46.53 3.74
1845 1935 5.221130 ACTATAAATAGCGGACGAAAGCTC 58.779 41.667 6.55 0.00 43.44 4.09
1846 1936 6.067862 ACTATAAATAGCGGACGAAAGCTCG 61.068 44.000 6.55 0.00 43.44 5.03
1847 1937 8.163558 ACTATAAATAGCGGACGAAAGCTCGA 62.164 42.308 1.98 0.00 43.44 4.04
1848 1938 9.381078 ACTATAAATAGCGGACGAAAGCTCGAT 62.381 40.741 1.98 0.00 43.44 3.59
1858 1948 2.121009 GAAAGCTCGATAACCTCTCGC 58.879 52.381 0.00 0.00 36.11 5.03
1859 1949 1.394618 AAGCTCGATAACCTCTCGCT 58.605 50.000 0.00 0.00 36.11 4.93
1860 1950 0.948678 AGCTCGATAACCTCTCGCTC 59.051 55.000 0.00 0.00 36.11 5.03
1861 1951 0.948678 GCTCGATAACCTCTCGCTCT 59.051 55.000 0.00 0.00 36.11 4.09
1862 1952 1.069500 GCTCGATAACCTCTCGCTCTC 60.069 57.143 0.00 0.00 36.11 3.20
1863 1953 1.193650 CTCGATAACCTCTCGCTCTCG 59.806 57.143 0.00 0.00 36.11 4.04
1864 1954 0.236187 CGATAACCTCTCGCTCTCGG 59.764 60.000 0.00 0.00 36.13 4.63
1865 1955 0.039888 GATAACCTCTCGCTCTCGGC 60.040 60.000 0.00 0.00 36.13 5.54
1866 1956 1.457009 ATAACCTCTCGCTCTCGGCC 61.457 60.000 0.00 0.00 37.74 6.13
1869 1959 3.816524 CTCTCGCTCTCGGCCGTT 61.817 66.667 27.15 0.00 37.74 4.44
1870 1960 3.343788 CTCTCGCTCTCGGCCGTTT 62.344 63.158 27.15 0.00 37.74 3.60
1871 1961 1.989966 CTCTCGCTCTCGGCCGTTTA 61.990 60.000 27.15 10.85 37.74 2.01
1872 1962 1.065928 CTCGCTCTCGGCCGTTTAT 59.934 57.895 27.15 0.00 37.74 1.40
1873 1963 1.209275 CTCGCTCTCGGCCGTTTATG 61.209 60.000 27.15 13.79 37.74 1.90
1874 1964 2.237751 CGCTCTCGGCCGTTTATGG 61.238 63.158 27.15 11.47 37.74 2.74
1875 1965 1.143183 GCTCTCGGCCGTTTATGGA 59.857 57.895 27.15 13.14 34.27 3.41
1876 1966 0.876342 GCTCTCGGCCGTTTATGGAG 60.876 60.000 27.15 21.41 34.27 3.86
1877 1967 0.249489 CTCTCGGCCGTTTATGGAGG 60.249 60.000 27.15 3.60 0.00 4.30
1883 1973 1.523758 GCCGTTTATGGAGGCTATGG 58.476 55.000 0.00 0.00 46.83 2.74
1884 1974 1.523758 CCGTTTATGGAGGCTATGGC 58.476 55.000 0.00 0.00 37.82 4.40
1947 2054 3.859414 GAGAGCGGCCTGGAGCAT 61.859 66.667 15.20 5.07 46.50 3.79
2001 2108 0.249238 GCAAACACGGCATTGACCAA 60.249 50.000 1.20 0.00 0.00 3.67
2005 2112 0.465460 ACACGGCATTGACCAACTGT 60.465 50.000 0.00 0.00 0.00 3.55
2023 2130 4.953868 TGTTGTGCCGCGCTACGT 62.954 61.111 5.56 0.00 41.42 3.57
2337 5357 4.862641 ATATCTTTACCCCAACTGCAGT 57.137 40.909 15.25 15.25 0.00 4.40
2340 5360 2.976882 TCTTTACCCCAACTGCAGTAGT 59.023 45.455 22.01 17.00 42.89 2.73
2415 5435 9.262358 ACTTGTTCTGATGTAAACTAAAGAGAC 57.738 33.333 0.00 0.00 0.00 3.36
2465 5485 6.821160 CGGATATCTTGAGATAGAGCAGACTA 59.179 42.308 2.05 0.00 40.04 2.59
2468 5488 5.024785 TCTTGAGATAGAGCAGACTACGA 57.975 43.478 0.00 0.00 0.00 3.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.814183 CTACGATATCGCGGCCACCC 62.814 65.000 24.59 0.00 44.43 4.61
12 13 1.443872 CTACGATATCGCGGCCACC 60.444 63.158 24.59 0.00 44.43 4.61
13 14 0.454620 CTCTACGATATCGCGGCCAC 60.455 60.000 24.59 0.00 44.43 5.01
14 15 1.583495 CCTCTACGATATCGCGGCCA 61.583 60.000 24.59 4.07 44.43 5.36
15 16 1.136984 CCTCTACGATATCGCGGCC 59.863 63.158 24.59 0.00 44.43 6.13
16 17 1.136984 CCCTCTACGATATCGCGGC 59.863 63.158 24.59 0.00 44.43 6.53
17 18 0.727970 CTCCCTCTACGATATCGCGG 59.272 60.000 24.59 18.00 44.43 6.46
18 19 1.661617 CTCTCCCTCTACGATATCGCG 59.338 57.143 24.59 15.73 44.43 5.87
19 20 2.011222 CCTCTCCCTCTACGATATCGC 58.989 57.143 24.59 0.00 44.43 4.58
20 21 2.236644 TCCCTCTCCCTCTACGATATCG 59.763 54.545 23.18 23.18 46.33 2.92
21 22 3.371166 CCTCCCTCTCCCTCTACGATATC 60.371 56.522 0.00 0.00 0.00 1.63
22 23 2.578940 CCTCCCTCTCCCTCTACGATAT 59.421 54.545 0.00 0.00 0.00 1.63
23 24 1.986631 CCTCCCTCTCCCTCTACGATA 59.013 57.143 0.00 0.00 0.00 2.92
24 25 0.774908 CCTCCCTCTCCCTCTACGAT 59.225 60.000 0.00 0.00 0.00 3.73
25 26 0.327287 TCCTCCCTCTCCCTCTACGA 60.327 60.000 0.00 0.00 0.00 3.43
26 27 0.109723 CTCCTCCCTCTCCCTCTACG 59.890 65.000 0.00 0.00 0.00 3.51
27 28 1.144298 GTCTCCTCCCTCTCCCTCTAC 59.856 61.905 0.00 0.00 0.00 2.59
28 29 1.525175 GTCTCCTCCCTCTCCCTCTA 58.475 60.000 0.00 0.00 0.00 2.43
29 30 1.641552 CGTCTCCTCCCTCTCCCTCT 61.642 65.000 0.00 0.00 0.00 3.69
30 31 1.152839 CGTCTCCTCCCTCTCCCTC 60.153 68.421 0.00 0.00 0.00 4.30
31 32 1.619975 TCGTCTCCTCCCTCTCCCT 60.620 63.158 0.00 0.00 0.00 4.20
32 33 1.152839 CTCGTCTCCTCCCTCTCCC 60.153 68.421 0.00 0.00 0.00 4.30
33 34 1.152839 CCTCGTCTCCTCCCTCTCC 60.153 68.421 0.00 0.00 0.00 3.71
34 35 1.152839 CCCTCGTCTCCTCCCTCTC 60.153 68.421 0.00 0.00 0.00 3.20
35 36 2.695970 CCCCTCGTCTCCTCCCTCT 61.696 68.421 0.00 0.00 0.00 3.69
36 37 2.123640 CCCCTCGTCTCCTCCCTC 60.124 72.222 0.00 0.00 0.00 4.30
37 38 3.756783 CCCCCTCGTCTCCTCCCT 61.757 72.222 0.00 0.00 0.00 4.20
38 39 3.620545 AACCCCCTCGTCTCCTCCC 62.621 68.421 0.00 0.00 0.00 4.30
39 40 2.039137 AACCCCCTCGTCTCCTCC 59.961 66.667 0.00 0.00 0.00 4.30
40 41 1.305046 TGAACCCCCTCGTCTCCTC 60.305 63.158 0.00 0.00 0.00 3.71
41 42 1.305381 CTGAACCCCCTCGTCTCCT 60.305 63.158 0.00 0.00 0.00 3.69
42 43 3.020237 GCTGAACCCCCTCGTCTCC 62.020 68.421 0.00 0.00 0.00 3.71
43 44 1.545706 AAGCTGAACCCCCTCGTCTC 61.546 60.000 0.00 0.00 0.00 3.36
44 45 1.536662 AAGCTGAACCCCCTCGTCT 60.537 57.895 0.00 0.00 0.00 4.18
45 46 1.079057 GAAGCTGAACCCCCTCGTC 60.079 63.158 0.00 0.00 0.00 4.20
46 47 1.201429 ATGAAGCTGAACCCCCTCGT 61.201 55.000 0.00 0.00 0.00 4.18
47 48 0.745845 CATGAAGCTGAACCCCCTCG 60.746 60.000 0.00 0.00 0.00 4.63
48 49 0.620556 TCATGAAGCTGAACCCCCTC 59.379 55.000 0.00 0.00 0.00 4.30
49 50 0.622665 CTCATGAAGCTGAACCCCCT 59.377 55.000 0.00 0.00 0.00 4.79
50 51 0.394899 CCTCATGAAGCTGAACCCCC 60.395 60.000 0.00 0.00 0.00 5.40
51 52 0.620556 TCCTCATGAAGCTGAACCCC 59.379 55.000 0.00 0.00 0.00 4.95
52 53 1.556911 TCTCCTCATGAAGCTGAACCC 59.443 52.381 0.00 0.00 0.00 4.11
53 54 2.499289 TCTCTCCTCATGAAGCTGAACC 59.501 50.000 0.00 0.00 0.00 3.62
54 55 3.056250 TGTCTCTCCTCATGAAGCTGAAC 60.056 47.826 0.00 0.00 0.00 3.18
55 56 3.168292 TGTCTCTCCTCATGAAGCTGAA 58.832 45.455 0.00 0.00 0.00 3.02
56 57 2.759535 CTGTCTCTCCTCATGAAGCTGA 59.240 50.000 0.00 0.00 0.00 4.26
57 58 2.739287 GCTGTCTCTCCTCATGAAGCTG 60.739 54.545 0.00 0.00 0.00 4.24
58 59 1.481772 GCTGTCTCTCCTCATGAAGCT 59.518 52.381 0.00 0.00 0.00 3.74
59 60 1.802136 CGCTGTCTCTCCTCATGAAGC 60.802 57.143 0.00 0.00 0.00 3.86
60 61 1.202394 CCGCTGTCTCTCCTCATGAAG 60.202 57.143 0.00 0.00 0.00 3.02
61 62 0.820226 CCGCTGTCTCTCCTCATGAA 59.180 55.000 0.00 0.00 0.00 2.57
62 63 1.670949 GCCGCTGTCTCTCCTCATGA 61.671 60.000 0.00 0.00 0.00 3.07
63 64 1.227205 GCCGCTGTCTCTCCTCATG 60.227 63.158 0.00 0.00 0.00 3.07
64 65 1.381056 AGCCGCTGTCTCTCCTCAT 60.381 57.895 0.00 0.00 0.00 2.90
65 66 2.036414 AGCCGCTGTCTCTCCTCA 59.964 61.111 0.00 0.00 0.00 3.86
66 67 2.493973 CAGCCGCTGTCTCTCCTC 59.506 66.667 12.54 0.00 0.00 3.71
67 68 3.768922 GCAGCCGCTGTCTCTCCT 61.769 66.667 21.29 0.00 33.43 3.69
68 69 4.828925 GGCAGCCGCTGTCTCTCC 62.829 72.222 21.29 9.95 38.60 3.71
69 70 4.828925 GGGCAGCCGCTGTCTCTC 62.829 72.222 23.64 4.48 36.22 3.20
103 104 1.452108 GAAAGGTGGCCATCCTCGG 60.452 63.158 22.32 0.00 33.76 4.63
104 105 1.815421 CGAAAGGTGGCCATCCTCG 60.815 63.158 22.32 21.28 33.76 4.63
105 106 2.115291 GCGAAAGGTGGCCATCCTC 61.115 63.158 22.32 14.69 33.76 3.71
106 107 2.044946 GCGAAAGGTGGCCATCCT 60.045 61.111 13.91 16.47 36.81 3.24
107 108 3.508840 CGCGAAAGGTGGCCATCC 61.509 66.667 13.91 14.28 0.00 3.51
108 109 4.179579 GCGCGAAAGGTGGCCATC 62.180 66.667 12.10 9.02 0.00 3.51
114 115 4.093952 CAGCAGGCGCGAAAGGTG 62.094 66.667 12.10 10.25 45.49 4.00
134 135 2.404995 AACTACTCCTCCGCGTCCG 61.405 63.158 4.92 0.00 0.00 4.79
135 136 1.139095 CAACTACTCCTCCGCGTCC 59.861 63.158 4.92 0.00 0.00 4.79
136 137 1.516603 GCAACTACTCCTCCGCGTC 60.517 63.158 4.92 0.00 0.00 5.19
137 138 2.572284 GCAACTACTCCTCCGCGT 59.428 61.111 4.92 0.00 0.00 6.01
138 139 2.579787 CGCAACTACTCCTCCGCG 60.580 66.667 0.00 0.00 36.47 6.46
139 140 2.202756 CCGCAACTACTCCTCCGC 60.203 66.667 0.00 0.00 0.00 5.54
140 141 2.202756 GCCGCAACTACTCCTCCG 60.203 66.667 0.00 0.00 0.00 4.63
141 142 2.202756 CGCCGCAACTACTCCTCC 60.203 66.667 0.00 0.00 0.00 4.30
142 143 2.202756 CCGCCGCAACTACTCCTC 60.203 66.667 0.00 0.00 0.00 3.71
143 144 4.452733 GCCGCCGCAACTACTCCT 62.453 66.667 0.00 0.00 34.03 3.69
168 169 3.873026 GATGAGATCCGCCGCCCAG 62.873 68.421 0.00 0.00 0.00 4.45
169 170 3.928779 GATGAGATCCGCCGCCCA 61.929 66.667 0.00 0.00 0.00 5.36
170 171 3.928779 TGATGAGATCCGCCGCCC 61.929 66.667 0.00 0.00 0.00 6.13
171 172 2.663188 GTGATGAGATCCGCCGCC 60.663 66.667 0.00 0.00 0.00 6.13
172 173 2.663188 GGTGATGAGATCCGCCGC 60.663 66.667 0.00 0.00 0.00 6.53
173 174 2.355126 CGGTGATGAGATCCGCCG 60.355 66.667 7.19 7.19 39.27 6.46
174 175 1.006805 CTCGGTGATGAGATCCGCC 60.007 63.158 0.00 0.00 43.35 6.13
175 176 1.006805 CCTCGGTGATGAGATCCGC 60.007 63.158 0.00 0.00 43.35 5.54
176 177 1.662608 CCCTCGGTGATGAGATCCG 59.337 63.158 0.00 0.00 44.76 4.18
177 178 1.369321 GCCCTCGGTGATGAGATCC 59.631 63.158 0.00 0.00 38.28 3.36
178 179 1.118356 AGGCCCTCGGTGATGAGATC 61.118 60.000 0.00 0.00 38.28 2.75
179 180 1.074926 AGGCCCTCGGTGATGAGAT 60.075 57.895 0.00 0.00 38.28 2.75
180 181 1.758514 GAGGCCCTCGGTGATGAGA 60.759 63.158 0.00 0.00 38.28 3.27
181 182 1.406065 ATGAGGCCCTCGGTGATGAG 61.406 60.000 6.21 0.00 32.35 2.90
182 183 1.383109 ATGAGGCCCTCGGTGATGA 60.383 57.895 6.21 0.00 32.35 2.92
183 184 1.070445 GATGAGGCCCTCGGTGATG 59.930 63.158 6.21 0.00 32.35 3.07
184 185 2.502492 CGATGAGGCCCTCGGTGAT 61.502 63.158 6.21 0.00 32.35 3.06
185 186 3.147595 CGATGAGGCCCTCGGTGA 61.148 66.667 6.21 0.00 32.35 4.02
186 187 3.432051 GACGATGAGGCCCTCGGTG 62.432 68.421 20.15 0.13 39.16 4.94
187 188 3.148279 GACGATGAGGCCCTCGGT 61.148 66.667 20.15 3.87 39.16 4.69
188 189 4.271816 CGACGATGAGGCCCTCGG 62.272 72.222 20.15 0.31 39.16 4.63
189 190 4.933064 GCGACGATGAGGCCCTCG 62.933 72.222 16.01 16.01 40.62 4.63
190 191 3.532155 AGCGACGATGAGGCCCTC 61.532 66.667 2.98 2.98 0.00 4.30
191 192 3.842923 CAGCGACGATGAGGCCCT 61.843 66.667 7.46 0.00 0.00 5.19
192 193 4.899239 CCAGCGACGATGAGGCCC 62.899 72.222 15.87 0.00 0.00 5.80
194 195 4.521062 AGCCAGCGACGATGAGGC 62.521 66.667 15.87 10.71 45.54 4.70
195 196 2.169789 CAAGCCAGCGACGATGAGG 61.170 63.158 15.87 0.00 0.00 3.86
196 197 2.169789 CCAAGCCAGCGACGATGAG 61.170 63.158 15.87 5.95 0.00 2.90
197 198 2.125552 CCAAGCCAGCGACGATGA 60.126 61.111 15.87 0.00 0.00 2.92
198 199 3.197790 CCCAAGCCAGCGACGATG 61.198 66.667 6.03 6.03 0.00 3.84
210 211 3.335356 ATCTCACAGGCCGCCCAAG 62.335 63.158 5.55 0.00 0.00 3.61
211 212 3.329542 GATCTCACAGGCCGCCCAA 62.330 63.158 5.55 0.00 0.00 4.12
212 213 3.785859 GATCTCACAGGCCGCCCA 61.786 66.667 5.55 0.00 0.00 5.36
213 214 3.474570 AGATCTCACAGGCCGCCC 61.475 66.667 5.55 0.00 0.00 6.13
214 215 2.202987 CAGATCTCACAGGCCGCC 60.203 66.667 0.00 0.00 0.00 6.13
215 216 2.202987 CCAGATCTCACAGGCCGC 60.203 66.667 0.00 0.00 0.00 6.53
216 217 2.303549 GACCCAGATCTCACAGGCCG 62.304 65.000 0.00 0.00 0.00 6.13
217 218 1.524482 GACCCAGATCTCACAGGCC 59.476 63.158 0.00 0.00 0.00 5.19
218 219 1.142748 CGACCCAGATCTCACAGGC 59.857 63.158 0.00 0.00 0.00 4.85
219 220 0.457851 GTCGACCCAGATCTCACAGG 59.542 60.000 3.51 0.00 0.00 4.00
220 221 0.099613 CGTCGACCCAGATCTCACAG 59.900 60.000 10.58 0.00 0.00 3.66
221 222 1.313091 CCGTCGACCCAGATCTCACA 61.313 60.000 10.58 0.00 0.00 3.58
222 223 1.030488 TCCGTCGACCCAGATCTCAC 61.030 60.000 10.58 0.00 0.00 3.51
223 224 0.106669 ATCCGTCGACCCAGATCTCA 60.107 55.000 10.58 0.00 0.00 3.27
224 225 0.312416 CATCCGTCGACCCAGATCTC 59.688 60.000 10.58 0.00 0.00 2.75
225 226 1.739338 GCATCCGTCGACCCAGATCT 61.739 60.000 10.58 0.00 0.00 2.75
226 227 1.300233 GCATCCGTCGACCCAGATC 60.300 63.158 10.58 1.79 0.00 2.75
227 228 2.815308 GCATCCGTCGACCCAGAT 59.185 61.111 10.58 7.25 0.00 2.90
228 229 3.822192 CGCATCCGTCGACCCAGA 61.822 66.667 10.58 4.97 0.00 3.86
229 230 3.350909 TTCGCATCCGTCGACCCAG 62.351 63.158 10.58 0.00 35.51 4.45
230 231 3.350909 CTTCGCATCCGTCGACCCA 62.351 63.158 10.58 0.00 35.51 4.51
231 232 2.582498 CTTCGCATCCGTCGACCC 60.582 66.667 10.58 0.00 35.51 4.46
232 233 2.582498 CCTTCGCATCCGTCGACC 60.582 66.667 10.58 0.00 35.51 4.79
233 234 2.582498 CCCTTCGCATCCGTCGAC 60.582 66.667 5.18 5.18 35.51 4.20
234 235 3.833645 CCCCTTCGCATCCGTCGA 61.834 66.667 0.00 0.00 35.54 4.20
235 236 3.774959 CTCCCCTTCGCATCCGTCG 62.775 68.421 0.00 0.00 35.54 5.12
236 237 1.749334 ATCTCCCCTTCGCATCCGTC 61.749 60.000 0.00 0.00 35.54 4.79
237 238 1.762460 ATCTCCCCTTCGCATCCGT 60.762 57.895 0.00 0.00 35.54 4.69
238 239 1.301244 CATCTCCCCTTCGCATCCG 60.301 63.158 0.00 0.00 0.00 4.18
239 240 0.533755 CACATCTCCCCTTCGCATCC 60.534 60.000 0.00 0.00 0.00 3.51
240 241 0.533755 CCACATCTCCCCTTCGCATC 60.534 60.000 0.00 0.00 0.00 3.91
241 242 0.982852 TCCACATCTCCCCTTCGCAT 60.983 55.000 0.00 0.00 0.00 4.73
242 243 1.612146 TCCACATCTCCCCTTCGCA 60.612 57.895 0.00 0.00 0.00 5.10
243 244 1.153349 GTCCACATCTCCCCTTCGC 60.153 63.158 0.00 0.00 0.00 4.70
244 245 1.141881 CGTCCACATCTCCCCTTCG 59.858 63.158 0.00 0.00 0.00 3.79
245 246 1.522569 CCGTCCACATCTCCCCTTC 59.477 63.158 0.00 0.00 0.00 3.46
246 247 1.995626 CCCGTCCACATCTCCCCTT 60.996 63.158 0.00 0.00 0.00 3.95
247 248 2.365635 CCCGTCCACATCTCCCCT 60.366 66.667 0.00 0.00 0.00 4.79
248 249 4.176752 GCCCGTCCACATCTCCCC 62.177 72.222 0.00 0.00 0.00 4.81
249 250 4.530857 CGCCCGTCCACATCTCCC 62.531 72.222 0.00 0.00 0.00 4.30
250 251 4.530857 CCGCCCGTCCACATCTCC 62.531 72.222 0.00 0.00 0.00 3.71
266 267 3.058160 AACACATCAGCAGCCGCC 61.058 61.111 0.00 0.00 39.83 6.13
267 268 2.177531 CAACACATCAGCAGCCGC 59.822 61.111 0.00 0.00 38.99 6.53
268 269 1.020861 TAGCAACACATCAGCAGCCG 61.021 55.000 0.00 0.00 0.00 5.52
269 270 1.386533 ATAGCAACACATCAGCAGCC 58.613 50.000 0.00 0.00 0.00 4.85
270 271 2.163010 ACAATAGCAACACATCAGCAGC 59.837 45.455 0.00 0.00 0.00 5.25
271 272 5.746307 ATACAATAGCAACACATCAGCAG 57.254 39.130 0.00 0.00 0.00 4.24
272 273 6.479990 GTCTATACAATAGCAACACATCAGCA 59.520 38.462 0.00 0.00 0.00 4.41
273 274 6.346120 CGTCTATACAATAGCAACACATCAGC 60.346 42.308 0.00 0.00 0.00 4.26
274 275 6.144563 CCGTCTATACAATAGCAACACATCAG 59.855 42.308 0.00 0.00 0.00 2.90
275 276 5.983118 CCGTCTATACAATAGCAACACATCA 59.017 40.000 0.00 0.00 0.00 3.07
276 277 6.213677 TCCGTCTATACAATAGCAACACATC 58.786 40.000 0.00 0.00 0.00 3.06
277 278 6.156748 TCCGTCTATACAATAGCAACACAT 57.843 37.500 0.00 0.00 0.00 3.21
278 279 5.585820 TCCGTCTATACAATAGCAACACA 57.414 39.130 0.00 0.00 0.00 3.72
279 280 4.444720 GCTCCGTCTATACAATAGCAACAC 59.555 45.833 0.00 0.00 0.00 3.32
280 281 4.500887 GGCTCCGTCTATACAATAGCAACA 60.501 45.833 0.00 0.00 0.00 3.33
281 282 3.988517 GGCTCCGTCTATACAATAGCAAC 59.011 47.826 0.00 0.00 0.00 4.17
282 283 3.639561 TGGCTCCGTCTATACAATAGCAA 59.360 43.478 0.00 0.00 0.00 3.91
283 284 3.227614 TGGCTCCGTCTATACAATAGCA 58.772 45.455 0.00 0.00 0.00 3.49
284 285 3.839293 CTGGCTCCGTCTATACAATAGC 58.161 50.000 0.00 0.00 0.00 2.97
285 286 3.255888 TGCTGGCTCCGTCTATACAATAG 59.744 47.826 0.00 0.00 0.00 1.73
286 287 3.227614 TGCTGGCTCCGTCTATACAATA 58.772 45.455 0.00 0.00 0.00 1.90
287 288 2.039418 TGCTGGCTCCGTCTATACAAT 58.961 47.619 0.00 0.00 0.00 2.71
288 289 1.480789 TGCTGGCTCCGTCTATACAA 58.519 50.000 0.00 0.00 0.00 2.41
289 290 1.480789 TTGCTGGCTCCGTCTATACA 58.519 50.000 0.00 0.00 0.00 2.29
290 291 2.159085 ACTTTGCTGGCTCCGTCTATAC 60.159 50.000 0.00 0.00 0.00 1.47
291 292 2.108168 ACTTTGCTGGCTCCGTCTATA 58.892 47.619 0.00 0.00 0.00 1.31
292 293 0.905357 ACTTTGCTGGCTCCGTCTAT 59.095 50.000 0.00 0.00 0.00 1.98
293 294 0.037326 CACTTTGCTGGCTCCGTCTA 60.037 55.000 0.00 0.00 0.00 2.59
294 295 1.302033 CACTTTGCTGGCTCCGTCT 60.302 57.895 0.00 0.00 0.00 4.18
295 296 2.328099 CCACTTTGCTGGCTCCGTC 61.328 63.158 0.00 0.00 0.00 4.79
296 297 2.281761 CCACTTTGCTGGCTCCGT 60.282 61.111 0.00 0.00 0.00 4.69
297 298 2.281761 ACCACTTTGCTGGCTCCG 60.282 61.111 0.00 0.00 34.20 4.63
298 299 2.270986 CCACCACTTTGCTGGCTCC 61.271 63.158 0.00 0.00 34.20 4.70
299 300 0.610232 ATCCACCACTTTGCTGGCTC 60.610 55.000 0.00 0.00 34.20 4.70
300 301 0.896940 CATCCACCACTTTGCTGGCT 60.897 55.000 0.00 0.00 34.20 4.75
301 302 1.588082 CATCCACCACTTTGCTGGC 59.412 57.895 0.00 0.00 34.20 4.85
302 303 0.251297 TCCATCCACCACTTTGCTGG 60.251 55.000 0.00 0.00 37.33 4.85
303 304 1.475280 CATCCATCCACCACTTTGCTG 59.525 52.381 0.00 0.00 0.00 4.41
304 305 1.617804 CCATCCATCCACCACTTTGCT 60.618 52.381 0.00 0.00 0.00 3.91
305 306 0.819582 CCATCCATCCACCACTTTGC 59.180 55.000 0.00 0.00 0.00 3.68
306 307 1.005805 TCCCATCCATCCACCACTTTG 59.994 52.381 0.00 0.00 0.00 2.77
307 308 1.005924 GTCCCATCCATCCACCACTTT 59.994 52.381 0.00 0.00 0.00 2.66
308 309 0.625849 GTCCCATCCATCCACCACTT 59.374 55.000 0.00 0.00 0.00 3.16
309 310 1.626356 CGTCCCATCCATCCACCACT 61.626 60.000 0.00 0.00 0.00 4.00
310 311 1.153168 CGTCCCATCCATCCACCAC 60.153 63.158 0.00 0.00 0.00 4.16
311 312 0.694105 ATCGTCCCATCCATCCACCA 60.694 55.000 0.00 0.00 0.00 4.17
312 313 0.035458 GATCGTCCCATCCATCCACC 59.965 60.000 0.00 0.00 0.00 4.61
313 314 1.051812 AGATCGTCCCATCCATCCAC 58.948 55.000 0.00 0.00 0.00 4.02
314 315 2.694616 TAGATCGTCCCATCCATCCA 57.305 50.000 0.00 0.00 0.00 3.41
315 316 3.071023 TGTTTAGATCGTCCCATCCATCC 59.929 47.826 0.00 0.00 0.00 3.51
316 317 4.202264 ACTGTTTAGATCGTCCCATCCATC 60.202 45.833 0.00 0.00 0.00 3.51
317 318 3.711704 ACTGTTTAGATCGTCCCATCCAT 59.288 43.478 0.00 0.00 0.00 3.41
318 319 3.104512 ACTGTTTAGATCGTCCCATCCA 58.895 45.455 0.00 0.00 0.00 3.41
319 320 3.821421 ACTGTTTAGATCGTCCCATCC 57.179 47.619 0.00 0.00 0.00 3.51
320 321 6.338937 ACTTTACTGTTTAGATCGTCCCATC 58.661 40.000 0.00 0.00 0.00 3.51
321 322 6.295719 ACTTTACTGTTTAGATCGTCCCAT 57.704 37.500 0.00 0.00 0.00 4.00
322 323 5.733620 ACTTTACTGTTTAGATCGTCCCA 57.266 39.130 0.00 0.00 0.00 4.37
323 324 5.930569 ACAACTTTACTGTTTAGATCGTCCC 59.069 40.000 0.00 0.00 0.00 4.46
324 325 7.417496 AACAACTTTACTGTTTAGATCGTCC 57.583 36.000 0.00 0.00 33.16 4.79
325 326 9.712359 AAAAACAACTTTACTGTTTAGATCGTC 57.288 29.630 1.68 0.00 44.25 4.20
352 353 8.033626 ACAACTTTATTGTTTACCCGTCAAAAA 58.966 29.630 0.00 0.00 0.00 1.94
353 354 7.545489 ACAACTTTATTGTTTACCCGTCAAAA 58.455 30.769 0.00 0.00 0.00 2.44
354 355 7.098074 ACAACTTTATTGTTTACCCGTCAAA 57.902 32.000 0.00 0.00 0.00 2.69
355 356 6.696441 ACAACTTTATTGTTTACCCGTCAA 57.304 33.333 0.00 0.00 0.00 3.18
356 357 6.696441 AACAACTTTATTGTTTACCCGTCA 57.304 33.333 0.00 0.00 39.36 4.35
357 358 6.798476 GCTAACAACTTTATTGTTTACCCGTC 59.202 38.462 10.06 0.00 42.10 4.79
358 359 6.262720 TGCTAACAACTTTATTGTTTACCCGT 59.737 34.615 10.06 0.00 42.10 5.28
359 360 6.670233 TGCTAACAACTTTATTGTTTACCCG 58.330 36.000 10.06 0.00 42.10 5.28
360 361 8.874744 TTTGCTAACAACTTTATTGTTTACCC 57.125 30.769 10.06 0.00 42.10 3.69
364 365 8.888716 CCCTTTTTGCTAACAACTTTATTGTTT 58.111 29.630 10.06 0.00 42.10 2.83
365 366 8.044309 ACCCTTTTTGCTAACAACTTTATTGTT 58.956 29.630 9.73 9.73 44.03 2.83
366 367 7.561251 ACCCTTTTTGCTAACAACTTTATTGT 58.439 30.769 0.00 0.00 34.87 2.71
367 368 8.432110 AACCCTTTTTGCTAACAACTTTATTG 57.568 30.769 0.00 0.00 34.87 1.90
368 369 8.888716 CAAACCCTTTTTGCTAACAACTTTATT 58.111 29.630 0.00 0.00 34.87 1.40
369 370 7.497579 CCAAACCCTTTTTGCTAACAACTTTAT 59.502 33.333 0.00 0.00 34.87 1.40
370 371 6.819146 CCAAACCCTTTTTGCTAACAACTTTA 59.181 34.615 0.00 0.00 34.87 1.85
371 372 5.645929 CCAAACCCTTTTTGCTAACAACTTT 59.354 36.000 0.00 0.00 34.87 2.66
372 373 5.182487 CCAAACCCTTTTTGCTAACAACTT 58.818 37.500 0.00 0.00 34.87 2.66
373 374 4.383661 CCCAAACCCTTTTTGCTAACAACT 60.384 41.667 0.00 0.00 34.87 3.16
374 375 3.874543 CCCAAACCCTTTTTGCTAACAAC 59.125 43.478 0.00 0.00 34.87 3.32
375 376 3.118223 CCCCAAACCCTTTTTGCTAACAA 60.118 43.478 0.00 0.00 0.00 2.83
376 377 2.436173 CCCCAAACCCTTTTTGCTAACA 59.564 45.455 0.00 0.00 0.00 2.41
377 378 2.224426 CCCCCAAACCCTTTTTGCTAAC 60.224 50.000 0.00 0.00 0.00 2.34
378 379 2.050918 CCCCCAAACCCTTTTTGCTAA 58.949 47.619 0.00 0.00 0.00 3.09
379 380 1.062044 ACCCCCAAACCCTTTTTGCTA 60.062 47.619 0.00 0.00 0.00 3.49
380 381 0.327095 ACCCCCAAACCCTTTTTGCT 60.327 50.000 0.00 0.00 0.00 3.91
381 382 0.548989 AACCCCCAAACCCTTTTTGC 59.451 50.000 0.00 0.00 0.00 3.68
382 383 2.743510 CGAAACCCCCAAACCCTTTTTG 60.744 50.000 0.00 0.00 0.00 2.44
383 384 1.487142 CGAAACCCCCAAACCCTTTTT 59.513 47.619 0.00 0.00 0.00 1.94
384 385 1.124780 CGAAACCCCCAAACCCTTTT 58.875 50.000 0.00 0.00 0.00 2.27
385 386 0.262285 TCGAAACCCCCAAACCCTTT 59.738 50.000 0.00 0.00 0.00 3.11
386 387 0.178973 CTCGAAACCCCCAAACCCTT 60.179 55.000 0.00 0.00 0.00 3.95
387 388 1.063654 TCTCGAAACCCCCAAACCCT 61.064 55.000 0.00 0.00 0.00 4.34
388 389 0.039180 ATCTCGAAACCCCCAAACCC 59.961 55.000 0.00 0.00 0.00 4.11
389 390 2.751259 GTTATCTCGAAACCCCCAAACC 59.249 50.000 0.00 0.00 0.00 3.27
390 391 2.751259 GGTTATCTCGAAACCCCCAAAC 59.249 50.000 6.27 0.00 40.49 2.93
391 392 2.375845 TGGTTATCTCGAAACCCCCAAA 59.624 45.455 13.60 0.00 44.86 3.28
392 393 1.986631 TGGTTATCTCGAAACCCCCAA 59.013 47.619 13.60 0.00 44.86 4.12
393 394 1.659022 TGGTTATCTCGAAACCCCCA 58.341 50.000 13.60 2.39 44.86 4.96
394 395 3.292492 AATGGTTATCTCGAAACCCCC 57.708 47.619 13.60 0.00 44.86 5.40
395 396 3.630769 GGAAATGGTTATCTCGAAACCCC 59.369 47.826 13.60 5.24 44.86 4.95
396 397 3.311596 CGGAAATGGTTATCTCGAAACCC 59.688 47.826 13.60 0.30 44.86 4.11
397 398 4.186159 TCGGAAATGGTTATCTCGAAACC 58.814 43.478 10.06 10.06 45.53 3.27
398 399 5.050295 GGATCGGAAATGGTTATCTCGAAAC 60.050 44.000 0.00 0.00 0.00 2.78
399 400 5.054477 GGATCGGAAATGGTTATCTCGAAA 58.946 41.667 0.00 0.00 0.00 3.46
400 401 4.100344 TGGATCGGAAATGGTTATCTCGAA 59.900 41.667 0.00 0.00 0.00 3.71
401 402 3.639561 TGGATCGGAAATGGTTATCTCGA 59.360 43.478 0.00 0.00 0.00 4.04
402 403 3.990092 TGGATCGGAAATGGTTATCTCG 58.010 45.455 0.00 0.00 0.00 4.04
403 404 5.368989 AGTTGGATCGGAAATGGTTATCTC 58.631 41.667 0.00 0.00 0.00 2.75
404 405 5.373812 AGTTGGATCGGAAATGGTTATCT 57.626 39.130 0.00 0.00 0.00 1.98
405 406 6.451064 AAAGTTGGATCGGAAATGGTTATC 57.549 37.500 0.00 0.00 0.00 1.75
406 407 6.127451 GGAAAAGTTGGATCGGAAATGGTTAT 60.127 38.462 0.00 0.00 0.00 1.89
407 408 5.184287 GGAAAAGTTGGATCGGAAATGGTTA 59.816 40.000 0.00 0.00 0.00 2.85
408 409 4.021456 GGAAAAGTTGGATCGGAAATGGTT 60.021 41.667 0.00 0.00 0.00 3.67
409 410 3.509967 GGAAAAGTTGGATCGGAAATGGT 59.490 43.478 0.00 0.00 0.00 3.55
410 411 3.427503 CGGAAAAGTTGGATCGGAAATGG 60.428 47.826 0.00 0.00 0.00 3.16
411 412 3.427503 CCGGAAAAGTTGGATCGGAAATG 60.428 47.826 0.00 0.00 39.83 2.32
412 413 2.752903 CCGGAAAAGTTGGATCGGAAAT 59.247 45.455 0.00 0.00 39.83 2.17
413 414 2.156098 CCGGAAAAGTTGGATCGGAAA 58.844 47.619 0.00 0.00 39.83 3.13
414 415 1.612199 CCCGGAAAAGTTGGATCGGAA 60.612 52.381 0.73 0.00 39.83 4.30
415 416 0.035820 CCCGGAAAAGTTGGATCGGA 60.036 55.000 0.73 0.00 39.83 4.55
416 417 0.035820 TCCCGGAAAAGTTGGATCGG 60.036 55.000 0.73 0.00 37.50 4.18
417 418 2.038387 ATCCCGGAAAAGTTGGATCG 57.962 50.000 0.73 0.00 32.07 3.69
418 419 4.801330 AAAATCCCGGAAAAGTTGGATC 57.199 40.909 0.73 0.00 36.60 3.36
419 420 4.838423 AGAAAAATCCCGGAAAAGTTGGAT 59.162 37.500 0.73 0.00 39.26 3.41
420 421 4.219919 AGAAAAATCCCGGAAAAGTTGGA 58.780 39.130 0.73 0.00 0.00 3.53
421 422 4.600692 AGAAAAATCCCGGAAAAGTTGG 57.399 40.909 0.73 0.00 0.00 3.77
422 423 5.465390 GGAAAGAAAAATCCCGGAAAAGTTG 59.535 40.000 0.73 0.00 0.00 3.16
423 424 5.365605 AGGAAAGAAAAATCCCGGAAAAGTT 59.634 36.000 0.73 0.00 36.31 2.66
424 425 4.899457 AGGAAAGAAAAATCCCGGAAAAGT 59.101 37.500 0.73 0.00 36.31 2.66
425 426 5.468540 AGGAAAGAAAAATCCCGGAAAAG 57.531 39.130 0.73 0.00 36.31 2.27
426 427 6.722129 TCATAGGAAAGAAAAATCCCGGAAAA 59.278 34.615 0.73 0.00 36.31 2.29
427 428 6.249951 TCATAGGAAAGAAAAATCCCGGAAA 58.750 36.000 0.73 0.00 36.31 3.13
428 429 5.822204 TCATAGGAAAGAAAAATCCCGGAA 58.178 37.500 0.73 0.00 36.31 4.30
429 430 5.045140 ACTCATAGGAAAGAAAAATCCCGGA 60.045 40.000 0.73 0.00 36.31 5.14
430 431 5.193679 ACTCATAGGAAAGAAAAATCCCGG 58.806 41.667 0.00 0.00 36.31 5.73
431 432 8.989980 GTATACTCATAGGAAAGAAAAATCCCG 58.010 37.037 0.00 0.00 36.31 5.14
432 433 9.286170 GGTATACTCATAGGAAAGAAAAATCCC 57.714 37.037 2.25 0.00 36.31 3.85
456 457 8.352201 GGGTGTATTTACGTCTTTTTAAAAGGT 58.648 33.333 16.21 10.20 0.00 3.50
457 458 8.351461 TGGGTGTATTTACGTCTTTTTAAAAGG 58.649 33.333 16.21 3.75 0.00 3.11
458 459 9.902196 ATGGGTGTATTTACGTCTTTTTAAAAG 57.098 29.630 10.89 10.89 0.00 2.27
459 460 9.680315 CATGGGTGTATTTACGTCTTTTTAAAA 57.320 29.630 0.00 0.00 0.00 1.52
460 461 8.298140 CCATGGGTGTATTTACGTCTTTTTAAA 58.702 33.333 2.85 0.00 0.00 1.52
461 462 7.447853 ACCATGGGTGTATTTACGTCTTTTTAA 59.552 33.333 18.09 0.00 32.98 1.52
462 463 6.941436 ACCATGGGTGTATTTACGTCTTTTTA 59.059 34.615 18.09 0.00 32.98 1.52
463 464 5.771165 ACCATGGGTGTATTTACGTCTTTTT 59.229 36.000 18.09 0.00 32.98 1.94
464 465 5.318630 ACCATGGGTGTATTTACGTCTTTT 58.681 37.500 18.09 0.00 32.98 2.27
465 466 4.913784 ACCATGGGTGTATTTACGTCTTT 58.086 39.130 18.09 0.00 32.98 2.52
466 467 4.224370 AGACCATGGGTGTATTTACGTCTT 59.776 41.667 18.09 0.00 35.25 3.01
467 468 3.773119 AGACCATGGGTGTATTTACGTCT 59.227 43.478 18.09 1.75 35.25 4.18
468 469 4.133013 AGACCATGGGTGTATTTACGTC 57.867 45.455 18.09 0.00 35.25 4.34
469 470 4.563140 AAGACCATGGGTGTATTTACGT 57.437 40.909 18.09 0.00 35.25 3.57
470 471 5.909477 TCTAAGACCATGGGTGTATTTACG 58.091 41.667 18.09 0.00 35.25 3.18
483 484 3.327757 TCCAGTGCAAGTTCTAAGACCAT 59.672 43.478 0.00 0.00 0.00 3.55
484 485 2.703536 TCCAGTGCAAGTTCTAAGACCA 59.296 45.455 0.00 0.00 0.00 4.02
795 799 0.958382 CAGCGATTTGGGAAACGGGA 60.958 55.000 0.00 0.00 0.00 5.14
866 870 2.176889 GGACTCACCTAACTGCTACCA 58.823 52.381 0.00 0.00 35.41 3.25
892 896 0.179145 CTATTCAACCCGACGACGCT 60.179 55.000 0.64 0.00 38.29 5.07
935 939 3.831323 TGCTGAAGATCACAGGGAAAAA 58.169 40.909 17.36 0.00 36.09 1.94
976 980 0.315251 CCTCTCCATCGCGCTTATCA 59.685 55.000 5.56 0.00 0.00 2.15
1007 1011 1.141665 GATCCAAAATGGCCGTGGC 59.858 57.895 0.00 1.16 37.47 5.01
1008 1012 0.894141 TTGATCCAAAATGGCCGTGG 59.106 50.000 0.00 2.86 37.47 4.94
1009 1013 2.230992 TCTTTGATCCAAAATGGCCGTG 59.769 45.455 0.00 0.00 37.47 4.94
1010 1014 2.524306 TCTTTGATCCAAAATGGCCGT 58.476 42.857 0.00 0.00 37.47 5.68
1011 1015 3.591196 TTCTTTGATCCAAAATGGCCG 57.409 42.857 0.00 0.00 37.47 6.13
1012 1016 4.154737 GCTTTTCTTTGATCCAAAATGGCC 59.845 41.667 0.00 0.00 37.47 5.36
1013 1017 4.143052 CGCTTTTCTTTGATCCAAAATGGC 60.143 41.667 0.00 0.00 37.47 4.40
1014 1018 4.143052 GCGCTTTTCTTTGATCCAAAATGG 60.143 41.667 0.00 0.00 39.43 3.16
1049 1053 4.391523 GCAAGATTCAGAGTGGAGAAAGAC 59.608 45.833 0.00 0.00 0.00 3.01
1073 1077 1.218230 CTAGCGGAGGAAGCAATCGC 61.218 60.000 0.00 0.00 45.72 4.58
1125 1129 2.231964 GCAGCCCAAAATCACATTCTGA 59.768 45.455 0.00 0.00 0.00 3.27
1127 1131 1.551883 GGCAGCCCAAAATCACATTCT 59.448 47.619 0.00 0.00 0.00 2.40
1147 1151 4.082787 ACTGGGCATCAAACTTGTATTTCG 60.083 41.667 0.00 0.00 0.00 3.46
1154 1158 4.931002 CCATTAAACTGGGCATCAAACTTG 59.069 41.667 0.00 0.00 32.28 3.16
1185 1189 0.725686 CCGCACTTCTCAGCATTCTG 59.274 55.000 0.00 0.00 41.67 3.02
1222 1226 0.874175 TTCTGTTGCCACACGACGAG 60.874 55.000 0.00 0.00 35.13 4.18
1237 1241 8.031277 CCAAAAATCTTCTATTGTTCCCTTCTG 58.969 37.037 0.00 0.00 0.00 3.02
1247 1251 5.604565 GGGCATCCCAAAAATCTTCTATTG 58.395 41.667 0.00 0.00 44.65 1.90
1268 1272 7.025520 AGATTCATCCTTTACCTCATATGGG 57.974 40.000 2.13 0.00 0.00 4.00
1273 1277 6.617371 ACACCTAGATTCATCCTTTACCTCAT 59.383 38.462 0.00 0.00 0.00 2.90
1274 1278 5.964477 ACACCTAGATTCATCCTTTACCTCA 59.036 40.000 0.00 0.00 0.00 3.86
1346 1350 4.640201 GTGAGCAAGCCCTTAAATCATGTA 59.360 41.667 0.00 0.00 0.00 2.29
1356 1360 1.530013 GCACATGTGAGCAAGCCCTT 61.530 55.000 29.80 0.00 0.00 3.95
1423 1427 2.168521 CCTTGTTCTTCCGAGCCAGATA 59.831 50.000 0.00 0.00 0.00 1.98
1488 1492 1.651240 CCTTGTGCTTCGCCCTCATG 61.651 60.000 0.00 0.00 0.00 3.07
1544 1548 4.201990 GCTCACATCATCCCAATTCTTGTC 60.202 45.833 0.00 0.00 0.00 3.18
1545 1549 3.698040 GCTCACATCATCCCAATTCTTGT 59.302 43.478 0.00 0.00 0.00 3.16
1546 1550 3.067742 GGCTCACATCATCCCAATTCTTG 59.932 47.826 0.00 0.00 0.00 3.02
1554 1558 3.759581 ACATATTGGCTCACATCATCCC 58.240 45.455 0.00 0.00 0.00 3.85
1596 1600 8.054152 TGCAAACATAATGACACAGATTACAT 57.946 30.769 0.00 0.00 0.00 2.29
1607 1611 9.571810 TCATCTACAAAATGCAAACATAATGAC 57.428 29.630 0.00 0.00 34.62 3.06
1612 1616 9.791820 CTTCATCATCTACAAAATGCAAACATA 57.208 29.630 0.00 0.00 34.62 2.29
1613 1617 8.525316 TCTTCATCATCTACAAAATGCAAACAT 58.475 29.630 0.00 0.00 38.49 2.71
1614 1618 7.884257 TCTTCATCATCTACAAAATGCAAACA 58.116 30.769 0.00 0.00 0.00 2.83
1615 1619 7.008992 GCTCTTCATCATCTACAAAATGCAAAC 59.991 37.037 0.00 0.00 0.00 2.93
1616 1620 7.031372 GCTCTTCATCATCTACAAAATGCAAA 58.969 34.615 0.00 0.00 0.00 3.68
1617 1621 6.558009 GCTCTTCATCATCTACAAAATGCAA 58.442 36.000 0.00 0.00 0.00 4.08
1618 1622 5.220719 CGCTCTTCATCATCTACAAAATGCA 60.221 40.000 0.00 0.00 0.00 3.96
1619 1623 5.007039 TCGCTCTTCATCATCTACAAAATGC 59.993 40.000 0.00 0.00 0.00 3.56
1620 1624 6.292757 CCTCGCTCTTCATCATCTACAAAATG 60.293 42.308 0.00 0.00 0.00 2.32
1621 1625 5.757320 CCTCGCTCTTCATCATCTACAAAAT 59.243 40.000 0.00 0.00 0.00 1.82
1622 1626 5.111989 CCTCGCTCTTCATCATCTACAAAA 58.888 41.667 0.00 0.00 0.00 2.44
1623 1627 4.160439 ACCTCGCTCTTCATCATCTACAAA 59.840 41.667 0.00 0.00 0.00 2.83
1624 1628 3.701542 ACCTCGCTCTTCATCATCTACAA 59.298 43.478 0.00 0.00 0.00 2.41
1625 1629 3.291584 ACCTCGCTCTTCATCATCTACA 58.708 45.455 0.00 0.00 0.00 2.74
1626 1630 4.047822 CAACCTCGCTCTTCATCATCTAC 58.952 47.826 0.00 0.00 0.00 2.59
1627 1631 3.954258 TCAACCTCGCTCTTCATCATCTA 59.046 43.478 0.00 0.00 0.00 1.98
1628 1632 2.762887 TCAACCTCGCTCTTCATCATCT 59.237 45.455 0.00 0.00 0.00 2.90
1629 1633 3.170791 TCAACCTCGCTCTTCATCATC 57.829 47.619 0.00 0.00 0.00 2.92
1630 1634 3.616956 TTCAACCTCGCTCTTCATCAT 57.383 42.857 0.00 0.00 0.00 2.45
1631 1635 3.401033 TTTCAACCTCGCTCTTCATCA 57.599 42.857 0.00 0.00 0.00 3.07
1632 1636 3.064545 CCATTTCAACCTCGCTCTTCATC 59.935 47.826 0.00 0.00 0.00 2.92
1633 1637 3.012518 CCATTTCAACCTCGCTCTTCAT 58.987 45.455 0.00 0.00 0.00 2.57
1634 1638 2.426522 CCATTTCAACCTCGCTCTTCA 58.573 47.619 0.00 0.00 0.00 3.02
1635 1639 1.740025 CCCATTTCAACCTCGCTCTTC 59.260 52.381 0.00 0.00 0.00 2.87
1636 1640 1.351017 TCCCATTTCAACCTCGCTCTT 59.649 47.619 0.00 0.00 0.00 2.85
1637 1641 0.984230 TCCCATTTCAACCTCGCTCT 59.016 50.000 0.00 0.00 0.00 4.09
1638 1642 1.821216 TTCCCATTTCAACCTCGCTC 58.179 50.000 0.00 0.00 0.00 5.03
1639 1643 2.162681 CTTTCCCATTTCAACCTCGCT 58.837 47.619 0.00 0.00 0.00 4.93
1640 1644 2.159382 TCTTTCCCATTTCAACCTCGC 58.841 47.619 0.00 0.00 0.00 5.03
1641 1645 5.391312 AATTCTTTCCCATTTCAACCTCG 57.609 39.130 0.00 0.00 0.00 4.63
1642 1646 6.758254 TCAAATTCTTTCCCATTTCAACCTC 58.242 36.000 0.00 0.00 0.00 3.85
1643 1647 6.745794 TCAAATTCTTTCCCATTTCAACCT 57.254 33.333 0.00 0.00 0.00 3.50
1644 1648 7.984422 AATCAAATTCTTTCCCATTTCAACC 57.016 32.000 0.00 0.00 0.00 3.77
1703 1707 6.554419 TGCAATCCGATTGTTCTCTTTATTG 58.446 36.000 19.86 0.00 42.20 1.90
1704 1708 6.757897 TGCAATCCGATTGTTCTCTTTATT 57.242 33.333 19.86 0.00 42.20 1.40
1705 1709 6.949352 ATGCAATCCGATTGTTCTCTTTAT 57.051 33.333 19.86 3.08 42.20 1.40
1706 1710 6.374053 TGAATGCAATCCGATTGTTCTCTTTA 59.626 34.615 19.86 1.71 42.20 1.85
1707 1711 5.183713 TGAATGCAATCCGATTGTTCTCTTT 59.816 36.000 19.86 9.21 42.20 2.52
1719 1749 7.606858 ATGTTCTATCTATGAATGCAATCCG 57.393 36.000 0.00 0.00 0.00 4.18
1828 1918 0.454600 TCGAGCTTTCGTCCGCTATT 59.545 50.000 0.00 0.00 36.45 1.73
1835 1925 3.364946 GAGAGGTTATCGAGCTTTCGTC 58.635 50.000 0.00 0.00 35.91 4.20
1836 1926 3.423996 GAGAGGTTATCGAGCTTTCGT 57.576 47.619 0.00 0.00 35.91 3.85
1838 1928 2.121009 GCGAGAGGTTATCGAGCTTTC 58.879 52.381 0.00 0.00 42.76 2.62
1839 1929 1.751924 AGCGAGAGGTTATCGAGCTTT 59.248 47.619 0.00 0.00 42.76 3.51
1840 1930 1.335496 GAGCGAGAGGTTATCGAGCTT 59.665 52.381 0.00 0.00 42.72 3.74
1841 1931 0.948678 GAGCGAGAGGTTATCGAGCT 59.051 55.000 0.00 0.00 44.42 4.09
1842 1932 0.948678 AGAGCGAGAGGTTATCGAGC 59.051 55.000 0.00 0.00 45.11 5.03
1843 1933 1.193650 CGAGAGCGAGAGGTTATCGAG 59.806 57.143 0.00 0.00 46.80 4.04
1844 1934 1.218763 CGAGAGCGAGAGGTTATCGA 58.781 55.000 0.00 0.00 46.80 3.59
1845 1935 0.236187 CCGAGAGCGAGAGGTTATCG 59.764 60.000 0.00 0.00 45.11 2.92
1846 1936 0.039888 GCCGAGAGCGAGAGGTTATC 60.040 60.000 0.00 0.00 45.11 1.75
1847 1937 1.457009 GGCCGAGAGCGAGAGGTTAT 61.457 60.000 0.00 0.00 45.11 1.89
1848 1938 2.119655 GGCCGAGAGCGAGAGGTTA 61.120 63.158 0.00 0.00 45.11 2.85
1849 1939 3.453679 GGCCGAGAGCGAGAGGTT 61.454 66.667 0.00 0.00 45.11 3.50
1852 1942 1.989966 TAAACGGCCGAGAGCGAGAG 61.990 60.000 35.90 0.00 45.17 3.20
1853 1943 1.381928 ATAAACGGCCGAGAGCGAGA 61.382 55.000 35.90 7.93 45.17 4.04
1854 1944 1.065928 ATAAACGGCCGAGAGCGAG 59.934 57.895 35.90 0.00 45.17 5.03
1855 1945 1.226859 CATAAACGGCCGAGAGCGA 60.227 57.895 35.90 10.84 45.17 4.93
1856 1946 2.237751 CCATAAACGGCCGAGAGCG 61.238 63.158 35.90 16.64 45.17 5.03
1857 1947 0.876342 CTCCATAAACGGCCGAGAGC 60.876 60.000 35.90 0.00 42.60 4.09
1858 1948 0.249489 CCTCCATAAACGGCCGAGAG 60.249 60.000 35.90 23.66 0.00 3.20
1859 1949 1.820581 CCTCCATAAACGGCCGAGA 59.179 57.895 35.90 16.89 0.00 4.04
1860 1950 1.887707 GCCTCCATAAACGGCCGAG 60.888 63.158 35.90 16.96 37.86 4.63
1861 1951 1.044231 TAGCCTCCATAAACGGCCGA 61.044 55.000 35.90 10.61 44.84 5.54
1862 1952 0.034896 ATAGCCTCCATAAACGGCCG 59.965 55.000 26.86 26.86 44.84 6.13
1863 1953 1.523758 CATAGCCTCCATAAACGGCC 58.476 55.000 0.00 0.00 44.84 6.13
1864 1954 1.523758 CCATAGCCTCCATAAACGGC 58.476 55.000 0.00 0.00 44.09 5.68
1865 1955 1.202758 TGCCATAGCCTCCATAAACGG 60.203 52.381 0.00 0.00 38.69 4.44
1866 1956 2.146342 CTGCCATAGCCTCCATAAACG 58.854 52.381 0.00 0.00 38.69 3.60
1946 2053 0.393944 CAGCAGGCAGACCACATCAT 60.394 55.000 0.00 0.00 39.06 2.45
1947 2054 1.002990 CAGCAGGCAGACCACATCA 60.003 57.895 0.00 0.00 39.06 3.07
1996 2103 0.248458 CGGCACAACAACAGTTGGTC 60.248 55.000 17.76 0.00 45.32 4.02
2001 2108 4.250431 GCGCGGCACAACAACAGT 62.250 61.111 8.83 0.00 0.00 3.55
2005 2112 3.707700 CGTAGCGCGGCACAACAA 61.708 61.111 8.83 0.00 36.85 2.83
2104 2405 9.502091 TTGTTTTGACAGTGCTTAATCTATACT 57.498 29.630 0.00 0.00 0.00 2.12
2256 2564 6.260050 TGGTTTTCTCAATGTTCAGACTGTAC 59.740 38.462 5.33 5.33 0.00 2.90
2317 5337 4.781087 ACTACTGCAGTTGGGGTAAAGATA 59.219 41.667 27.06 0.19 31.59 1.98
2415 5435 4.104696 TGCTGATGTGCATGATTTTCTG 57.895 40.909 0.00 0.00 38.12 3.02
2465 5485 6.265577 GTTCTATTTAGCCAAAATGCATCGT 58.734 36.000 0.00 0.00 38.29 3.73
2468 5488 6.183360 GGAGGTTCTATTTAGCCAAAATGCAT 60.183 38.462 0.00 0.00 38.29 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.