Multiple sequence alignment - TraesCS3D01G236200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G236200 chr3D 100.000 5396 0 0 1 5396 326705515 326700120 0.000000e+00 9965.0
1 TraesCS3D01G236200 chr3A 96.090 1739 62 4 853 2590 438599294 438601027 0.000000e+00 2830.0
2 TraesCS3D01G236200 chr3A 94.077 1300 57 8 4109 5396 438602382 438603673 0.000000e+00 1956.0
3 TraesCS3D01G236200 chr3A 97.026 807 18 6 2590 3395 438601094 438601895 0.000000e+00 1352.0
4 TraesCS3D01G236200 chr3A 94.898 490 20 4 3476 3963 438601893 438602379 0.000000e+00 761.0
5 TraesCS3D01G236200 chr3A 93.333 150 8 2 3957 4105 213239510 213239362 2.530000e-53 220.0
6 TraesCS3D01G236200 chr3A 92.105 152 10 2 3957 4106 584094261 584094412 4.230000e-51 213.0
7 TraesCS3D01G236200 chr3A 96.190 105 3 1 734 838 438599207 438599310 2.580000e-38 171.0
8 TraesCS3D01G236200 chr3B 95.473 1237 37 6 853 2074 423816588 423815356 0.000000e+00 1956.0
9 TraesCS3D01G236200 chr3B 98.144 808 11 4 2590 3395 423814498 423813693 0.000000e+00 1406.0
10 TraesCS3D01G236200 chr3B 90.110 1092 64 25 4109 5185 423812586 423811524 0.000000e+00 1378.0
11 TraesCS3D01G236200 chr3B 97.688 519 10 1 2072 2590 423815081 423814565 0.000000e+00 891.0
12 TraesCS3D01G236200 chr3B 97.283 184 5 0 3476 3659 423813695 423813512 4.060000e-81 313.0
13 TraesCS3D01G236200 chr3B 94.857 175 7 2 3790 3963 423812762 423812589 6.890000e-69 272.0
14 TraesCS3D01G236200 chr3B 93.711 159 9 1 3658 3815 423813277 423813119 2.510000e-58 237.0
15 TraesCS3D01G236200 chr3B 97.391 115 3 0 5246 5360 423811524 423811410 4.260000e-46 196.0
16 TraesCS3D01G236200 chr3B 99.048 105 1 0 734 838 423816676 423816572 7.130000e-44 189.0
17 TraesCS3D01G236200 chr3B 93.137 102 6 1 3389 3490 620988989 620988889 1.210000e-31 148.0
18 TraesCS3D01G236200 chr3B 100.000 37 0 0 5360 5396 423811354 423811318 9.700000e-08 69.4
19 TraesCS3D01G236200 chr7D 95.322 513 20 4 225 734 28806567 28806056 0.000000e+00 811.0
20 TraesCS3D01G236200 chr7D 88.722 266 24 5 477 738 28812359 28812622 2.420000e-83 320.0
21 TraesCS3D01G236200 chr7D 96.237 186 7 0 1 186 28806757 28806572 6.790000e-79 305.0
22 TraesCS3D01G236200 chr7D 98.113 159 2 1 3957 4114 88371786 88371628 5.320000e-70 276.0
23 TraesCS3D01G236200 chr6A 92.787 305 18 4 435 737 6744831 6745133 6.420000e-119 438.0
24 TraesCS3D01G236200 chr6A 92.832 279 9 3 137 415 6744579 6744846 1.410000e-105 394.0
25 TraesCS3D01G236200 chr1A 80.556 504 81 13 996 1489 573064883 573064387 6.600000e-99 372.0
26 TraesCS3D01G236200 chr1A 86.335 161 22 0 2207 2367 573063178 573063018 5.550000e-40 176.0
27 TraesCS3D01G236200 chr1A 96.667 90 3 0 3393 3482 477033462 477033551 3.370000e-32 150.0
28 TraesCS3D01G236200 chr1D 80.039 511 77 15 1000 1489 476909130 476908624 6.650000e-94 355.0
29 TraesCS3D01G236200 chr1D 91.391 151 12 1 3957 4107 112751255 112751404 7.080000e-49 206.0
30 TraesCS3D01G236200 chr1D 86.335 161 22 0 2207 2367 476907466 476907306 5.550000e-40 176.0
31 TraesCS3D01G236200 chr1D 89.076 119 13 0 3187 3305 476905911 476905793 1.210000e-31 148.0
32 TraesCS3D01G236200 chr1B 89.837 246 23 2 490 734 566668512 566668268 1.130000e-81 315.0
33 TraesCS3D01G236200 chr1B 87.963 216 25 1 516 730 566684662 566684877 2.490000e-63 254.0
34 TraesCS3D01G236200 chr1B 91.720 157 11 2 3957 4112 558549553 558549708 3.270000e-52 217.0
35 TraesCS3D01G236200 chr1B 84.699 183 28 0 1307 1489 664297678 664297860 3.320000e-42 183.0
36 TraesCS3D01G236200 chr1B 87.097 155 20 0 2207 2361 664299221 664299375 5.550000e-40 176.0
37 TraesCS3D01G236200 chr1B 88.525 122 14 0 3184 3305 664300758 664300879 1.210000e-31 148.0
38 TraesCS3D01G236200 chr2B 88.980 245 25 2 490 733 745526307 745526064 8.780000e-78 302.0
39 TraesCS3D01G236200 chr6D 97.419 155 4 0 3957 4111 433894937 433894783 1.150000e-66 265.0
40 TraesCS3D01G236200 chr7B 95.395 152 7 0 3957 4108 540054403 540054554 5.400000e-60 243.0
41 TraesCS3D01G236200 chr7B 97.826 92 2 0 3390 3481 401557288 401557197 5.590000e-35 159.0
42 TraesCS3D01G236200 chr4D 94.872 156 6 2 3957 4111 17255453 17255607 5.400000e-60 243.0
43 TraesCS3D01G236200 chr2D 92.667 150 11 0 3957 4106 76436143 76435994 3.270000e-52 217.0
44 TraesCS3D01G236200 chr2D 97.826 92 2 0 3391 3482 25037971 25037880 5.590000e-35 159.0
45 TraesCS3D01G236200 chr4A 79.553 313 25 18 268 578 332653159 332652884 2.570000e-43 187.0
46 TraesCS3D01G236200 chrUn 94.059 101 5 1 3392 3491 62663488 62663388 9.360000e-33 152.0
47 TraesCS3D01G236200 chr5B 97.727 88 2 0 3391 3478 178981508 178981595 9.360000e-33 152.0
48 TraesCS3D01G236200 chr5A 95.652 92 4 0 3387 3478 207681823 207681914 1.210000e-31 148.0
49 TraesCS3D01G236200 chr7A 93.750 96 6 0 3386 3481 728025424 728025519 1.570000e-30 145.0
50 TraesCS3D01G236200 chr2A 92.929 99 5 2 3389 3486 84239597 84239500 5.630000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G236200 chr3D 326700120 326705515 5395 True 9965.000000 9965 100.0000 1 5396 1 chr3D.!!$R1 5395
1 TraesCS3D01G236200 chr3A 438599207 438603673 4466 False 1414.000000 2830 95.6562 734 5396 5 chr3A.!!$F2 4662
2 TraesCS3D01G236200 chr3B 423811318 423816676 5358 True 690.740000 1956 96.3705 734 5396 10 chr3B.!!$R2 4662
3 TraesCS3D01G236200 chr7D 28806056 28806757 701 True 558.000000 811 95.7795 1 734 2 chr7D.!!$R2 733
4 TraesCS3D01G236200 chr6A 6744579 6745133 554 False 416.000000 438 92.8095 137 737 2 chr6A.!!$F1 600
5 TraesCS3D01G236200 chr1A 573063018 573064883 1865 True 274.000000 372 83.4455 996 2367 2 chr1A.!!$R1 1371
6 TraesCS3D01G236200 chr1D 476905793 476909130 3337 True 226.333333 355 85.1500 1000 3305 3 chr1D.!!$R1 2305

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
216 217 0.034616 CCATTCCTCCTCTCCATCGC 59.965 60.0 0.00 0.0 0.00 4.58 F
1312 1401 0.031585 GGTTTGGGTTTTCGCAGGTC 59.968 55.0 0.00 0.0 43.36 3.85 F
2069 2491 0.451783 GTTAGCGCCAACCTCCAATG 59.548 55.0 7.53 0.0 0.00 2.82 F
3409 5278 0.264955 ATGTACTCCCTCCGTCCCAT 59.735 55.0 0.00 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1982 2404 0.482446 ACAGGTTGAGGAATGGGCAA 59.518 50.0 0.00 0.0 0.0 4.52 R
2467 3474 1.034838 AACGTCCACAGCTGCCAAAA 61.035 50.0 15.27 0.0 0.0 2.44 R
3984 6474 0.043637 CCAACCACTCCCCTACCCTA 59.956 60.0 0.00 0.0 0.0 3.53 R
4629 7120 0.601046 CAGACTTGCAAGCAGACCGA 60.601 55.0 26.27 0.0 0.0 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 4.931002 CCATTAAACTGGGCATCAAACTTG 59.069 41.667 0.00 0.00 32.28 3.16
53 54 4.082787 ACTGGGCATCAAACTTGTATTTCG 60.083 41.667 0.00 0.00 0.00 3.46
73 74 1.551883 GGCAGCCCAAAATCACATTCT 59.448 47.619 0.00 0.00 0.00 2.40
75 76 2.231964 GCAGCCCAAAATCACATTCTGA 59.768 45.455 0.00 0.00 0.00 3.27
127 128 1.218230 CTAGCGGAGGAAGCAATCGC 61.218 60.000 0.00 0.00 45.72 4.58
151 152 4.391523 GCAAGATTCAGAGTGGAGAAAGAC 59.608 45.833 0.00 0.00 0.00 3.01
186 187 4.143052 GCGCTTTTCTTTGATCCAAAATGG 60.143 41.667 0.00 0.00 39.43 3.16
187 188 4.143052 CGCTTTTCTTTGATCCAAAATGGC 60.143 41.667 0.00 0.00 37.47 4.40
188 189 4.154737 GCTTTTCTTTGATCCAAAATGGCC 59.845 41.667 0.00 0.00 37.47 5.36
189 190 3.591196 TTCTTTGATCCAAAATGGCCG 57.409 42.857 0.00 0.00 37.47 6.13
190 191 2.524306 TCTTTGATCCAAAATGGCCGT 58.476 42.857 0.00 0.00 37.47 5.68
191 192 2.230992 TCTTTGATCCAAAATGGCCGTG 59.769 45.455 0.00 0.00 37.47 4.94
192 193 0.894141 TTGATCCAAAATGGCCGTGG 59.106 50.000 0.00 2.86 37.47 4.94
193 194 1.141665 GATCCAAAATGGCCGTGGC 59.858 57.895 0.00 1.16 37.47 5.01
203 204 3.140814 GCCGTGGCCTTCCATTCC 61.141 66.667 3.32 0.00 45.62 3.01
204 205 2.677228 CCGTGGCCTTCCATTCCT 59.323 61.111 3.32 0.00 45.62 3.36
205 206 1.452108 CCGTGGCCTTCCATTCCTC 60.452 63.158 3.32 0.00 45.62 3.71
206 207 1.452108 CGTGGCCTTCCATTCCTCC 60.452 63.158 3.32 0.00 45.62 4.30
207 208 1.915078 CGTGGCCTTCCATTCCTCCT 61.915 60.000 3.32 0.00 45.62 3.69
208 209 0.106967 GTGGCCTTCCATTCCTCCTC 60.107 60.000 3.32 0.00 45.62 3.71
209 210 0.253347 TGGCCTTCCATTCCTCCTCT 60.253 55.000 3.32 0.00 37.47 3.69
210 211 0.472044 GGCCTTCCATTCCTCCTCTC 59.528 60.000 0.00 0.00 0.00 3.20
211 212 0.472044 GCCTTCCATTCCTCCTCTCC 59.528 60.000 0.00 0.00 0.00 3.71
212 213 1.885049 CCTTCCATTCCTCCTCTCCA 58.115 55.000 0.00 0.00 0.00 3.86
213 214 2.416638 CCTTCCATTCCTCCTCTCCAT 58.583 52.381 0.00 0.00 0.00 3.41
214 215 2.371510 CCTTCCATTCCTCCTCTCCATC 59.628 54.545 0.00 0.00 0.00 3.51
215 216 1.709578 TCCATTCCTCCTCTCCATCG 58.290 55.000 0.00 0.00 0.00 3.84
216 217 0.034616 CCATTCCTCCTCTCCATCGC 59.965 60.000 0.00 0.00 0.00 4.58
217 218 0.319383 CATTCCTCCTCTCCATCGCG 60.319 60.000 0.00 0.00 0.00 5.87
218 219 2.093537 ATTCCTCCTCTCCATCGCGC 62.094 60.000 0.00 0.00 0.00 6.86
219 220 3.222855 CCTCCTCTCCATCGCGCT 61.223 66.667 5.56 0.00 0.00 5.92
220 221 2.790791 CCTCCTCTCCATCGCGCTT 61.791 63.158 5.56 0.00 0.00 4.68
221 222 1.456196 CCTCCTCTCCATCGCGCTTA 61.456 60.000 5.56 0.00 0.00 3.09
222 223 0.600557 CTCCTCTCCATCGCGCTTAT 59.399 55.000 5.56 0.00 0.00 1.73
223 224 0.598562 TCCTCTCCATCGCGCTTATC 59.401 55.000 5.56 0.00 0.00 1.75
265 289 3.831323 TGCTGAAGATCACAGGGAAAAA 58.169 40.909 17.36 0.00 36.09 1.94
308 332 0.179145 CTATTCAACCCGACGACGCT 60.179 55.000 0.64 0.00 38.29 5.07
334 358 2.176889 GGACTCACCTAACTGCTACCA 58.823 52.381 0.00 0.00 35.41 3.25
405 429 0.958382 CAGCGATTTGGGAAACGGGA 60.958 55.000 0.00 0.00 0.00 5.14
406 430 0.676782 AGCGATTTGGGAAACGGGAG 60.677 55.000 0.00 0.00 0.00 4.30
407 431 0.675522 GCGATTTGGGAAACGGGAGA 60.676 55.000 0.00 0.00 0.00 3.71
408 432 1.369625 CGATTTGGGAAACGGGAGAG 58.630 55.000 0.00 0.00 0.00 3.20
409 433 1.066430 CGATTTGGGAAACGGGAGAGA 60.066 52.381 0.00 0.00 0.00 3.10
410 434 2.420129 CGATTTGGGAAACGGGAGAGAT 60.420 50.000 0.00 0.00 0.00 2.75
411 435 3.621558 GATTTGGGAAACGGGAGAGATT 58.378 45.455 0.00 0.00 0.00 2.40
412 436 3.518992 TTTGGGAAACGGGAGAGATTT 57.481 42.857 0.00 0.00 0.00 2.17
413 437 2.489938 TGGGAAACGGGAGAGATTTG 57.510 50.000 0.00 0.00 0.00 2.32
414 438 1.702957 TGGGAAACGGGAGAGATTTGT 59.297 47.619 0.00 0.00 0.00 2.83
415 439 2.084546 GGGAAACGGGAGAGATTTGTG 58.915 52.381 0.00 0.00 0.00 3.33
416 440 2.290071 GGGAAACGGGAGAGATTTGTGA 60.290 50.000 0.00 0.00 0.00 3.58
417 441 3.408634 GGAAACGGGAGAGATTTGTGAA 58.591 45.455 0.00 0.00 0.00 3.18
418 442 3.188667 GGAAACGGGAGAGATTTGTGAAC 59.811 47.826 0.00 0.00 0.00 3.18
419 443 2.080286 ACGGGAGAGATTTGTGAACG 57.920 50.000 0.00 0.00 0.00 3.95
420 444 1.616865 ACGGGAGAGATTTGTGAACGA 59.383 47.619 0.00 0.00 0.00 3.85
421 445 2.263077 CGGGAGAGATTTGTGAACGAG 58.737 52.381 0.00 0.00 0.00 4.18
422 446 2.622436 GGGAGAGATTTGTGAACGAGG 58.378 52.381 0.00 0.00 0.00 4.63
423 447 2.622436 GGAGAGATTTGTGAACGAGGG 58.378 52.381 0.00 0.00 0.00 4.30
424 448 2.622436 GAGAGATTTGTGAACGAGGGG 58.378 52.381 0.00 0.00 0.00 4.79
425 449 2.233922 GAGAGATTTGTGAACGAGGGGA 59.766 50.000 0.00 0.00 0.00 4.81
426 450 2.234908 AGAGATTTGTGAACGAGGGGAG 59.765 50.000 0.00 0.00 0.00 4.30
427 451 2.233922 GAGATTTGTGAACGAGGGGAGA 59.766 50.000 0.00 0.00 0.00 3.71
428 452 2.028020 AGATTTGTGAACGAGGGGAGAC 60.028 50.000 0.00 0.00 0.00 3.36
429 453 1.420430 TTTGTGAACGAGGGGAGACT 58.580 50.000 0.00 0.00 0.00 3.24
430 454 1.420430 TTGTGAACGAGGGGAGACTT 58.580 50.000 0.00 0.00 0.00 3.01
431 455 0.679505 TGTGAACGAGGGGAGACTTG 59.320 55.000 0.00 0.00 0.00 3.16
432 456 0.680061 GTGAACGAGGGGAGACTTGT 59.320 55.000 0.00 0.00 36.66 3.16
433 457 0.679505 TGAACGAGGGGAGACTTGTG 59.320 55.000 0.00 0.00 35.31 3.33
434 458 0.966920 GAACGAGGGGAGACTTGTGA 59.033 55.000 0.00 0.00 35.31 3.58
435 459 1.343465 GAACGAGGGGAGACTTGTGAA 59.657 52.381 0.00 0.00 35.31 3.18
436 460 0.680061 ACGAGGGGAGACTTGTGAAC 59.320 55.000 0.00 0.00 33.85 3.18
437 461 0.388649 CGAGGGGAGACTTGTGAACG 60.389 60.000 0.00 0.00 0.00 3.95
438 462 0.037232 GAGGGGAGACTTGTGAACGG 60.037 60.000 0.00 0.00 0.00 4.44
618 678 1.385528 TACGGCTGCATACGAAGAGA 58.614 50.000 15.81 0.00 0.00 3.10
619 679 0.101399 ACGGCTGCATACGAAGAGAG 59.899 55.000 15.81 0.00 0.00 3.20
620 680 0.101399 CGGCTGCATACGAAGAGAGT 59.899 55.000 0.50 0.00 0.00 3.24
621 681 1.565305 GGCTGCATACGAAGAGAGTG 58.435 55.000 0.50 0.00 0.00 3.51
622 682 1.135139 GGCTGCATACGAAGAGAGTGA 59.865 52.381 0.50 0.00 0.00 3.41
623 683 2.189342 GCTGCATACGAAGAGAGTGAC 58.811 52.381 0.00 0.00 0.00 3.67
624 684 2.159310 GCTGCATACGAAGAGAGTGACT 60.159 50.000 0.00 0.00 0.00 3.41
625 685 3.433709 CTGCATACGAAGAGAGTGACTG 58.566 50.000 0.00 0.00 0.00 3.51
626 686 2.820197 TGCATACGAAGAGAGTGACTGT 59.180 45.455 0.00 0.00 0.00 3.55
627 687 4.007659 TGCATACGAAGAGAGTGACTGTA 58.992 43.478 0.00 0.00 0.00 2.74
628 688 4.640647 TGCATACGAAGAGAGTGACTGTAT 59.359 41.667 0.00 0.00 0.00 2.29
629 689 5.125578 TGCATACGAAGAGAGTGACTGTATT 59.874 40.000 0.00 0.00 0.00 1.89
630 690 6.037098 GCATACGAAGAGAGTGACTGTATTT 58.963 40.000 0.00 0.00 0.00 1.40
631 691 6.020281 GCATACGAAGAGAGTGACTGTATTTG 60.020 42.308 3.12 3.12 0.00 2.32
632 692 4.238514 ACGAAGAGAGTGACTGTATTTGC 58.761 43.478 4.46 0.00 0.00 3.68
633 693 4.237724 CGAAGAGAGTGACTGTATTTGCA 58.762 43.478 0.00 0.00 0.00 4.08
634 694 4.090642 CGAAGAGAGTGACTGTATTTGCAC 59.909 45.833 0.00 0.00 0.00 4.57
635 695 3.931578 AGAGAGTGACTGTATTTGCACC 58.068 45.455 0.00 0.00 31.85 5.01
636 696 2.668457 GAGAGTGACTGTATTTGCACCG 59.332 50.000 0.00 0.00 31.85 4.94
637 697 2.037251 AGAGTGACTGTATTTGCACCGT 59.963 45.455 0.00 0.00 31.85 4.83
638 698 2.806244 GAGTGACTGTATTTGCACCGTT 59.194 45.455 0.00 0.00 31.85 4.44
639 699 3.211045 AGTGACTGTATTTGCACCGTTT 58.789 40.909 0.00 0.00 31.85 3.60
640 700 3.630312 AGTGACTGTATTTGCACCGTTTT 59.370 39.130 0.00 0.00 31.85 2.43
641 701 3.728718 GTGACTGTATTTGCACCGTTTTG 59.271 43.478 0.00 0.00 0.00 2.44
642 702 2.724174 GACTGTATTTGCACCGTTTTGC 59.276 45.455 0.00 0.00 43.31 3.68
650 710 2.928295 GCACCGTTTTGCAAATTCAG 57.072 45.000 13.65 5.18 42.49 3.02
651 711 2.200899 GCACCGTTTTGCAAATTCAGT 58.799 42.857 13.65 5.82 42.49 3.41
652 712 2.033832 GCACCGTTTTGCAAATTCAGTG 60.034 45.455 13.65 17.55 42.49 3.66
653 713 3.443037 CACCGTTTTGCAAATTCAGTGA 58.557 40.909 13.65 0.00 0.00 3.41
654 714 3.242712 CACCGTTTTGCAAATTCAGTGAC 59.757 43.478 13.65 5.29 0.00 3.67
655 715 2.794350 CCGTTTTGCAAATTCAGTGACC 59.206 45.455 13.65 0.00 0.00 4.02
656 716 3.443037 CGTTTTGCAAATTCAGTGACCA 58.557 40.909 13.65 0.00 0.00 4.02
657 717 3.242712 CGTTTTGCAAATTCAGTGACCAC 59.757 43.478 13.65 3.04 0.00 4.16
658 718 4.180057 GTTTTGCAAATTCAGTGACCACA 58.820 39.130 13.65 0.00 0.00 4.17
659 719 4.462508 TTTGCAAATTCAGTGACCACAA 57.537 36.364 8.05 0.00 0.00 3.33
660 720 4.462508 TTGCAAATTCAGTGACCACAAA 57.537 36.364 0.00 0.00 0.00 2.83
661 721 4.669206 TGCAAATTCAGTGACCACAAAT 57.331 36.364 0.00 0.00 0.00 2.32
662 722 4.370049 TGCAAATTCAGTGACCACAAATG 58.630 39.130 0.00 0.00 0.00 2.32
663 723 3.184986 GCAAATTCAGTGACCACAAATGC 59.815 43.478 0.00 0.00 0.00 3.56
664 724 2.995466 ATTCAGTGACCACAAATGCG 57.005 45.000 0.00 0.00 0.00 4.73
665 725 1.674359 TTCAGTGACCACAAATGCGT 58.326 45.000 0.00 0.00 0.00 5.24
666 726 2.535012 TCAGTGACCACAAATGCGTA 57.465 45.000 2.78 0.00 0.00 4.42
667 727 3.052455 TCAGTGACCACAAATGCGTAT 57.948 42.857 2.78 0.00 0.00 3.06
668 728 3.407698 TCAGTGACCACAAATGCGTATT 58.592 40.909 2.78 0.00 0.00 1.89
669 729 3.818210 TCAGTGACCACAAATGCGTATTT 59.182 39.130 5.58 5.58 36.97 1.40
670 730 4.277174 TCAGTGACCACAAATGCGTATTTT 59.723 37.500 8.88 0.00 34.34 1.82
671 731 4.382457 CAGTGACCACAAATGCGTATTTTG 59.618 41.667 8.88 10.44 34.34 2.44
672 732 3.121113 GTGACCACAAATGCGTATTTTGC 59.879 43.478 8.88 0.00 34.34 3.68
674 734 3.722147 ACCACAAATGCGTATTTTGCAA 58.278 36.364 8.88 0.00 46.87 4.08
675 735 3.492756 ACCACAAATGCGTATTTTGCAAC 59.507 39.130 8.88 0.00 46.87 4.17
676 736 3.740321 CCACAAATGCGTATTTTGCAACT 59.260 39.130 8.88 0.00 46.87 3.16
677 737 4.210955 CCACAAATGCGTATTTTGCAACTT 59.789 37.500 8.88 0.00 46.87 2.66
678 738 5.277250 CCACAAATGCGTATTTTGCAACTTT 60.277 36.000 8.88 0.00 46.87 2.66
679 739 5.616383 CACAAATGCGTATTTTGCAACTTTG 59.384 36.000 8.88 10.69 46.87 2.77
680 740 5.293079 ACAAATGCGTATTTTGCAACTTTGT 59.707 32.000 8.88 11.67 44.41 2.83
681 741 4.970472 ATGCGTATTTTGCAACTTTGTG 57.030 36.364 0.00 0.00 46.87 3.33
682 742 2.537625 TGCGTATTTTGCAACTTTGTGC 59.462 40.909 0.00 0.00 45.15 4.57
691 751 2.548875 GCAACTTTGTGCACCAAATGA 58.451 42.857 15.69 0.00 44.29 2.57
692 752 2.284952 GCAACTTTGTGCACCAAATGAC 59.715 45.455 15.69 4.98 44.29 3.06
693 753 2.865551 CAACTTTGTGCACCAAATGACC 59.134 45.455 15.69 0.00 42.02 4.02
694 754 2.106566 ACTTTGTGCACCAAATGACCA 58.893 42.857 15.69 0.00 42.02 4.02
695 755 2.699846 ACTTTGTGCACCAAATGACCAT 59.300 40.909 15.69 0.00 42.02 3.55
696 756 3.243839 ACTTTGTGCACCAAATGACCATC 60.244 43.478 15.69 0.00 42.02 3.51
697 757 1.255882 TGTGCACCAAATGACCATCC 58.744 50.000 15.69 0.00 0.00 3.51
698 758 1.255882 GTGCACCAAATGACCATCCA 58.744 50.000 5.22 0.00 0.00 3.41
699 759 1.203052 GTGCACCAAATGACCATCCAG 59.797 52.381 5.22 0.00 0.00 3.86
700 760 1.203038 TGCACCAAATGACCATCCAGT 60.203 47.619 0.00 0.00 0.00 4.00
701 761 1.203052 GCACCAAATGACCATCCAGTG 59.797 52.381 0.00 0.00 0.00 3.66
702 762 1.203052 CACCAAATGACCATCCAGTGC 59.797 52.381 0.00 0.00 0.00 4.40
703 763 1.203038 ACCAAATGACCATCCAGTGCA 60.203 47.619 0.00 0.00 0.00 4.57
704 764 1.894466 CCAAATGACCATCCAGTGCAA 59.106 47.619 0.00 0.00 0.00 4.08
705 765 2.094390 CCAAATGACCATCCAGTGCAAG 60.094 50.000 0.00 0.00 0.00 4.01
706 766 2.559668 CAAATGACCATCCAGTGCAAGT 59.440 45.455 0.00 0.00 0.00 3.16
707 767 2.592102 ATGACCATCCAGTGCAAGTT 57.408 45.000 0.00 0.00 0.00 2.66
708 768 1.896220 TGACCATCCAGTGCAAGTTC 58.104 50.000 0.00 0.00 0.00 3.01
709 769 1.421268 TGACCATCCAGTGCAAGTTCT 59.579 47.619 0.00 0.00 0.00 3.01
710 770 2.637382 TGACCATCCAGTGCAAGTTCTA 59.363 45.455 0.00 0.00 0.00 2.10
711 771 3.072330 TGACCATCCAGTGCAAGTTCTAA 59.928 43.478 0.00 0.00 0.00 2.10
712 772 3.679389 ACCATCCAGTGCAAGTTCTAAG 58.321 45.455 0.00 0.00 0.00 2.18
713 773 3.327757 ACCATCCAGTGCAAGTTCTAAGA 59.672 43.478 0.00 0.00 0.00 2.10
714 774 3.686726 CCATCCAGTGCAAGTTCTAAGAC 59.313 47.826 0.00 0.00 0.00 3.01
715 775 3.402628 TCCAGTGCAAGTTCTAAGACC 57.597 47.619 0.00 0.00 0.00 3.85
716 776 2.703536 TCCAGTGCAAGTTCTAAGACCA 59.296 45.455 0.00 0.00 0.00 4.02
717 777 3.327757 TCCAGTGCAAGTTCTAAGACCAT 59.672 43.478 0.00 0.00 0.00 3.55
718 778 3.438087 CCAGTGCAAGTTCTAAGACCATG 59.562 47.826 0.00 0.00 0.00 3.66
719 779 3.438087 CAGTGCAAGTTCTAAGACCATGG 59.562 47.826 11.19 11.19 0.00 3.66
720 780 2.749621 GTGCAAGTTCTAAGACCATGGG 59.250 50.000 18.09 0.00 0.00 4.00
721 781 2.375174 TGCAAGTTCTAAGACCATGGGT 59.625 45.455 18.09 3.19 39.44 4.51
722 782 2.749621 GCAAGTTCTAAGACCATGGGTG 59.250 50.000 18.09 1.05 35.25 4.61
723 783 3.810743 GCAAGTTCTAAGACCATGGGTGT 60.811 47.826 18.09 2.39 35.25 4.16
724 784 4.564821 GCAAGTTCTAAGACCATGGGTGTA 60.565 45.833 18.09 3.55 35.25 2.90
725 785 5.745227 CAAGTTCTAAGACCATGGGTGTAT 58.255 41.667 18.09 0.00 35.25 2.29
726 786 6.180472 CAAGTTCTAAGACCATGGGTGTATT 58.820 40.000 18.09 0.96 35.25 1.89
727 787 6.388619 AGTTCTAAGACCATGGGTGTATTT 57.611 37.500 18.09 3.54 35.25 1.40
728 788 7.504926 AGTTCTAAGACCATGGGTGTATTTA 57.495 36.000 18.09 4.50 35.25 1.40
729 789 7.336396 AGTTCTAAGACCATGGGTGTATTTAC 58.664 38.462 18.09 5.21 35.25 2.01
730 790 5.909477 TCTAAGACCATGGGTGTATTTACG 58.091 41.667 18.09 0.00 35.25 3.18
731 791 4.563140 AAGACCATGGGTGTATTTACGT 57.437 40.909 18.09 0.00 35.25 3.57
732 792 4.133013 AGACCATGGGTGTATTTACGTC 57.867 45.455 18.09 0.00 35.25 4.34
840 900 8.874744 TTTGCTAACAACTTTATTGTTTACCC 57.125 30.769 10.06 0.00 42.10 3.69
841 901 6.670233 TGCTAACAACTTTATTGTTTACCCG 58.330 36.000 10.06 0.00 42.10 5.28
842 902 6.262720 TGCTAACAACTTTATTGTTTACCCGT 59.737 34.615 10.06 0.00 42.10 5.28
843 903 6.798476 GCTAACAACTTTATTGTTTACCCGTC 59.202 38.462 10.06 0.00 42.10 4.79
844 904 6.696441 AACAACTTTATTGTTTACCCGTCA 57.304 33.333 0.00 0.00 39.36 4.35
845 905 6.696441 ACAACTTTATTGTTTACCCGTCAA 57.304 33.333 0.00 0.00 0.00 3.18
846 906 7.098074 ACAACTTTATTGTTTACCCGTCAAA 57.902 32.000 0.00 0.00 0.00 2.69
847 907 7.545489 ACAACTTTATTGTTTACCCGTCAAAA 58.455 30.769 0.00 0.00 0.00 2.44
848 908 8.033626 ACAACTTTATTGTTTACCCGTCAAAAA 58.966 29.630 0.00 0.00 0.00 1.94
929 989 5.746307 ATACAATAGCAACACATCAGCAG 57.254 39.130 0.00 0.00 0.00 4.24
956 1017 1.141881 CGTCCACATCTCCCCTTCG 59.858 63.158 0.00 0.00 0.00 3.79
1244 1312 4.966274 TGCCCTGGTACCCCACGT 62.966 66.667 10.07 0.00 35.17 4.49
1312 1401 0.031585 GGTTTGGGTTTTCGCAGGTC 59.968 55.000 0.00 0.00 43.36 3.85
1384 1473 3.861797 GTGATCATCCCGGCCGGT 61.862 66.667 40.52 24.16 0.00 5.28
1513 1602 9.447157 AGATTCTCAACTCTCTTCAAATTTAGG 57.553 33.333 0.00 0.00 0.00 2.69
1524 1613 6.299141 TCTTCAAATTTAGGTCTGTTGCTCT 58.701 36.000 0.00 0.00 0.00 4.09
1525 1614 7.450074 TCTTCAAATTTAGGTCTGTTGCTCTA 58.550 34.615 0.00 0.00 0.00 2.43
1537 1626 4.156556 TCTGTTGCTCTAATGGTTGATTGC 59.843 41.667 0.00 0.00 0.00 3.56
1645 1734 1.712018 GGAAATTGTAGGCGGGCGTC 61.712 60.000 0.00 0.00 0.00 5.19
1658 1747 1.257936 CGGGCGTCGTTTGATTATCAG 59.742 52.381 0.00 0.00 0.00 2.90
1820 2014 6.640499 TGTTACTTGCATTCTAATGTTTGTGC 59.360 34.615 4.71 0.00 38.65 4.57
1850 2044 5.182001 CCTGGACAAATGAAAACTAGGTCAG 59.818 44.000 0.00 0.00 0.00 3.51
1852 2046 6.833041 TGGACAAATGAAAACTAGGTCAGTA 58.167 36.000 0.00 0.00 36.04 2.74
1956 2378 4.020307 TCATCTGTCCTACATGCTTGTCAA 60.020 41.667 8.74 0.00 37.28 3.18
2013 2435 2.366916 CTCAACCTGTTGACTGAGGAGT 59.633 50.000 8.58 0.00 43.90 3.85
2056 2478 2.380084 TTCTAACCTGGCTGTTAGCG 57.620 50.000 17.30 3.00 44.71 4.26
2069 2491 0.451783 GTTAGCGCCAACCTCCAATG 59.548 55.000 7.53 0.00 0.00 2.82
2092 2791 6.506147 TGCATAATGTATCCATTTTCAGTGC 58.494 36.000 0.00 0.00 41.50 4.40
2099 2798 3.029320 TCCATTTTCAGTGCATGTTGC 57.971 42.857 0.00 0.00 45.29 4.17
2119 2818 6.757478 TGTTGCGTTAGGAAATCGTTATATGA 59.243 34.615 0.00 0.00 0.00 2.15
2120 2819 7.439955 TGTTGCGTTAGGAAATCGTTATATGAT 59.560 33.333 0.00 0.00 0.00 2.45
2250 3257 3.142951 CAACCCTGTGAATTCAACCGTA 58.857 45.455 10.35 0.00 0.00 4.02
2467 3474 5.367945 TTTGTCCTTAACTGGAGTGTTCT 57.632 39.130 0.00 0.00 36.69 3.01
2625 3851 3.833650 ACTTTCATGGTGAAATCATGCCA 59.166 39.130 5.67 0.00 44.37 4.92
2695 3921 6.769341 TGAAATGGGAAGTGATCATGTCTATG 59.231 38.462 0.00 0.00 35.57 2.23
2896 4122 5.927030 AGTTGAATAGTGTACATTTGTGCG 58.073 37.500 0.00 0.00 33.15 5.34
3352 5221 9.672086 TGTTGTTTACTGCAGTTGTTATTTATC 57.328 29.630 27.06 7.05 0.00 1.75
3355 5224 9.278978 TGTTTACTGCAGTTGTTATTTATCTGA 57.721 29.630 27.06 0.00 0.00 3.27
3395 5264 8.506168 TCTAGATGGTTCCAAATTTCATGTAC 57.494 34.615 0.00 0.00 0.00 2.90
3396 5265 8.328758 TCTAGATGGTTCCAAATTTCATGTACT 58.671 33.333 0.00 0.00 0.00 2.73
3397 5266 7.396540 AGATGGTTCCAAATTTCATGTACTC 57.603 36.000 0.00 0.00 0.00 2.59
3398 5267 5.975693 TGGTTCCAAATTTCATGTACTCC 57.024 39.130 0.00 0.00 0.00 3.85
3399 5268 4.770010 TGGTTCCAAATTTCATGTACTCCC 59.230 41.667 0.00 0.00 0.00 4.30
3400 5269 5.016831 GGTTCCAAATTTCATGTACTCCCT 58.983 41.667 0.00 0.00 0.00 4.20
3401 5270 5.125578 GGTTCCAAATTTCATGTACTCCCTC 59.874 44.000 0.00 0.00 0.00 4.30
3402 5271 4.855340 TCCAAATTTCATGTACTCCCTCC 58.145 43.478 0.00 0.00 0.00 4.30
3403 5272 3.627577 CCAAATTTCATGTACTCCCTCCG 59.372 47.826 0.00 0.00 0.00 4.63
3404 5273 4.261801 CAAATTTCATGTACTCCCTCCGT 58.738 43.478 0.00 0.00 0.00 4.69
3405 5274 3.821421 ATTTCATGTACTCCCTCCGTC 57.179 47.619 0.00 0.00 0.00 4.79
3406 5275 1.481871 TTCATGTACTCCCTCCGTCC 58.518 55.000 0.00 0.00 0.00 4.79
3407 5276 0.396695 TCATGTACTCCCTCCGTCCC 60.397 60.000 0.00 0.00 0.00 4.46
3408 5277 0.686441 CATGTACTCCCTCCGTCCCA 60.686 60.000 0.00 0.00 0.00 4.37
3409 5278 0.264955 ATGTACTCCCTCCGTCCCAT 59.735 55.000 0.00 0.00 0.00 4.00
3410 5279 0.928505 TGTACTCCCTCCGTCCCATA 59.071 55.000 0.00 0.00 0.00 2.74
3411 5280 1.288633 TGTACTCCCTCCGTCCCATAA 59.711 52.381 0.00 0.00 0.00 1.90
3412 5281 2.090943 TGTACTCCCTCCGTCCCATAAT 60.091 50.000 0.00 0.00 0.00 1.28
3413 5282 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
3414 5283 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
3415 5284 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
3416 5285 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
3417 5286 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
3418 5287 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
3419 5288 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
3421 5290 2.132762 CCGTCCCATAATGTAAGACGC 58.867 52.381 5.39 0.00 46.66 5.19
3422 5291 2.223971 CCGTCCCATAATGTAAGACGCT 60.224 50.000 5.39 0.00 46.66 5.07
3423 5292 3.454375 CGTCCCATAATGTAAGACGCTT 58.546 45.455 0.00 0.00 43.07 4.68
3424 5293 3.869246 CGTCCCATAATGTAAGACGCTTT 59.131 43.478 0.00 0.00 43.07 3.51
3425 5294 4.331717 CGTCCCATAATGTAAGACGCTTTT 59.668 41.667 0.00 0.00 43.07 2.27
3426 5295 5.163794 CGTCCCATAATGTAAGACGCTTTTT 60.164 40.000 0.00 0.00 43.07 1.94
3427 5296 6.036300 CGTCCCATAATGTAAGACGCTTTTTA 59.964 38.462 0.00 0.00 43.07 1.52
3428 5297 7.413219 CGTCCCATAATGTAAGACGCTTTTTAA 60.413 37.037 0.00 0.00 43.07 1.52
3429 5298 7.695201 GTCCCATAATGTAAGACGCTTTTTAAC 59.305 37.037 0.00 0.00 0.00 2.01
3430 5299 7.390996 TCCCATAATGTAAGACGCTTTTTAACA 59.609 33.333 0.00 0.00 0.00 2.41
3431 5300 7.483691 CCCATAATGTAAGACGCTTTTTAACAC 59.516 37.037 0.00 0.00 0.00 3.32
3432 5301 8.234546 CCATAATGTAAGACGCTTTTTAACACT 58.765 33.333 0.00 0.00 0.00 3.55
3435 5304 7.958053 ATGTAAGACGCTTTTTAACACTAGT 57.042 32.000 0.00 0.00 0.00 2.57
3436 5305 7.169035 TGTAAGACGCTTTTTAACACTAGTG 57.831 36.000 21.44 21.44 0.00 2.74
3438 5307 7.920151 TGTAAGACGCTTTTTAACACTAGTGTA 59.080 33.333 28.13 11.69 44.13 2.90
3439 5308 7.404139 AAGACGCTTTTTAACACTAGTGTAG 57.596 36.000 28.13 21.05 44.13 2.74
3440 5309 6.510536 AGACGCTTTTTAACACTAGTGTAGT 58.489 36.000 28.13 16.41 44.13 2.73
3472 5341 5.044428 CGTCTTACATTATAGGACGGAGG 57.956 47.826 9.88 0.00 43.69 4.30
3473 5342 4.082895 CGTCTTACATTATAGGACGGAGGG 60.083 50.000 9.88 0.00 43.69 4.30
3474 5343 5.075493 GTCTTACATTATAGGACGGAGGGA 58.925 45.833 0.00 0.00 0.00 4.20
3475 5344 5.183522 GTCTTACATTATAGGACGGAGGGAG 59.816 48.000 0.00 0.00 0.00 4.30
3476 5345 3.614568 ACATTATAGGACGGAGGGAGT 57.385 47.619 0.00 0.00 0.00 3.85
3477 5346 4.736611 ACATTATAGGACGGAGGGAGTA 57.263 45.455 0.00 0.00 0.00 2.59
3516 5385 7.849804 TTTCTCTAGATTTATGCAGTGGTTC 57.150 36.000 0.00 0.00 0.00 3.62
3604 5473 3.057946 GTGGCTAAGCTTTGTTTCCTGAG 60.058 47.826 3.20 0.00 0.00 3.35
3650 5519 2.471862 TCGTTTGGTTTTTGCGGTAC 57.528 45.000 0.00 0.00 0.00 3.34
3682 5788 7.524717 AGTAATTGCTGTTGGACTTTTATGT 57.475 32.000 0.00 0.00 0.00 2.29
3714 5821 6.160576 TCTTTGACATTTTTAAGCTGCCTT 57.839 33.333 0.00 0.00 35.05 4.35
3841 6331 4.074259 TGCACACTGATCAACTTGCTATT 58.926 39.130 18.06 0.00 0.00 1.73
3922 6412 4.690748 TGCTCAAGTATTCTTACTGTGCAC 59.309 41.667 10.75 10.75 38.69 4.57
3956 6446 6.222038 AGAGTATTCTCCACGCTGAATTAA 57.778 37.500 0.00 0.00 41.26 1.40
3959 6449 6.043411 AGTATTCTCCACGCTGAATTAAGTC 58.957 40.000 0.00 0.00 35.01 3.01
3963 6453 3.071479 TCCACGCTGAATTAAGTCCAAC 58.929 45.455 0.00 0.00 0.00 3.77
3964 6454 2.159707 CCACGCTGAATTAAGTCCAACG 60.160 50.000 0.00 4.36 0.00 4.10
3965 6455 2.478894 CACGCTGAATTAAGTCCAACGT 59.521 45.455 8.52 8.52 0.00 3.99
3966 6456 3.059188 CACGCTGAATTAAGTCCAACGTT 60.059 43.478 10.82 0.00 0.00 3.99
3967 6457 3.562557 ACGCTGAATTAAGTCCAACGTTT 59.437 39.130 0.00 0.00 0.00 3.60
3968 6458 4.035909 ACGCTGAATTAAGTCCAACGTTTT 59.964 37.500 0.00 0.00 0.00 2.43
3969 6459 4.973663 CGCTGAATTAAGTCCAACGTTTTT 59.026 37.500 0.00 0.00 0.00 1.94
3970 6460 5.108405 CGCTGAATTAAGTCCAACGTTTTTG 60.108 40.000 0.00 0.00 0.00 2.44
3971 6461 5.746721 GCTGAATTAAGTCCAACGTTTTTGT 59.253 36.000 0.00 0.00 0.00 2.83
3972 6462 6.291585 GCTGAATTAAGTCCAACGTTTTTGTG 60.292 38.462 0.00 0.00 0.00 3.33
3973 6463 6.853720 TGAATTAAGTCCAACGTTTTTGTGA 58.146 32.000 0.00 0.00 0.00 3.58
3974 6464 6.970043 TGAATTAAGTCCAACGTTTTTGTGAG 59.030 34.615 0.00 0.00 0.00 3.51
3975 6465 5.883503 TTAAGTCCAACGTTTTTGTGAGT 57.116 34.783 0.00 0.00 0.00 3.41
3976 6466 6.981762 TTAAGTCCAACGTTTTTGTGAGTA 57.018 33.333 0.00 0.00 0.00 2.59
3977 6467 5.479716 AAGTCCAACGTTTTTGTGAGTAG 57.520 39.130 0.00 0.00 0.00 2.57
3978 6468 4.510571 AGTCCAACGTTTTTGTGAGTAGT 58.489 39.130 0.00 0.00 0.00 2.73
3979 6469 4.569564 AGTCCAACGTTTTTGTGAGTAGTC 59.430 41.667 0.00 0.00 0.00 2.59
3980 6470 3.872771 TCCAACGTTTTTGTGAGTAGTCC 59.127 43.478 0.00 0.00 0.00 3.85
3981 6471 3.302870 CCAACGTTTTTGTGAGTAGTCCG 60.303 47.826 0.00 0.00 0.00 4.79
3982 6472 1.862827 ACGTTTTTGTGAGTAGTCCGC 59.137 47.619 0.00 0.00 0.00 5.54
3983 6473 2.132762 CGTTTTTGTGAGTAGTCCGCT 58.867 47.619 0.00 0.00 0.00 5.52
3984 6474 2.542595 CGTTTTTGTGAGTAGTCCGCTT 59.457 45.455 0.00 0.00 0.00 4.68
3985 6475 3.737266 CGTTTTTGTGAGTAGTCCGCTTA 59.263 43.478 0.00 0.00 0.00 3.09
3986 6476 4.143389 CGTTTTTGTGAGTAGTCCGCTTAG 60.143 45.833 0.00 0.00 0.00 2.18
3987 6477 3.587797 TTTGTGAGTAGTCCGCTTAGG 57.412 47.619 0.00 0.00 42.97 2.69
3988 6478 1.471119 TGTGAGTAGTCCGCTTAGGG 58.529 55.000 0.00 0.00 41.52 3.53
3989 6479 1.272313 TGTGAGTAGTCCGCTTAGGGT 60.272 52.381 0.00 0.00 41.52 4.34
3990 6480 2.025981 TGTGAGTAGTCCGCTTAGGGTA 60.026 50.000 0.00 0.00 41.52 3.69
3991 6481 2.617774 GTGAGTAGTCCGCTTAGGGTAG 59.382 54.545 0.00 0.00 41.52 3.18
3992 6482 2.228925 GAGTAGTCCGCTTAGGGTAGG 58.771 57.143 0.00 0.00 41.52 3.18
3993 6483 1.133544 AGTAGTCCGCTTAGGGTAGGG 60.134 57.143 0.00 0.00 41.52 3.53
3994 6484 0.186873 TAGTCCGCTTAGGGTAGGGG 59.813 60.000 0.00 0.00 46.60 4.79
3997 6487 4.701286 CGCTTAGGGTAGGGGAGT 57.299 61.111 0.00 0.00 0.00 3.85
3998 6488 2.125178 CGCTTAGGGTAGGGGAGTG 58.875 63.158 0.00 0.00 0.00 3.51
3999 6489 1.400530 CGCTTAGGGTAGGGGAGTGG 61.401 65.000 0.00 0.00 0.00 4.00
4000 6490 0.326332 GCTTAGGGTAGGGGAGTGGT 60.326 60.000 0.00 0.00 0.00 4.16
4001 6491 1.904865 GCTTAGGGTAGGGGAGTGGTT 60.905 57.143 0.00 0.00 0.00 3.67
4002 6492 1.838077 CTTAGGGTAGGGGAGTGGTTG 59.162 57.143 0.00 0.00 0.00 3.77
4003 6493 0.043637 TAGGGTAGGGGAGTGGTTGG 59.956 60.000 0.00 0.00 0.00 3.77
4004 6494 2.306384 GGGTAGGGGAGTGGTTGGG 61.306 68.421 0.00 0.00 0.00 4.12
4005 6495 1.540617 GGTAGGGGAGTGGTTGGGT 60.541 63.158 0.00 0.00 0.00 4.51
4006 6496 1.683441 GTAGGGGAGTGGTTGGGTG 59.317 63.158 0.00 0.00 0.00 4.61
4007 6497 1.540367 TAGGGGAGTGGTTGGGTGG 60.540 63.158 0.00 0.00 0.00 4.61
4008 6498 3.979497 GGGGAGTGGTTGGGTGGG 61.979 72.222 0.00 0.00 0.00 4.61
4009 6499 2.856988 GGGAGTGGTTGGGTGGGA 60.857 66.667 0.00 0.00 0.00 4.37
4010 6500 2.238701 GGGAGTGGTTGGGTGGGAT 61.239 63.158 0.00 0.00 0.00 3.85
4011 6501 1.303282 GGAGTGGTTGGGTGGGATC 59.697 63.158 0.00 0.00 0.00 3.36
4012 6502 1.078426 GAGTGGTTGGGTGGGATCG 60.078 63.158 0.00 0.00 0.00 3.69
4013 6503 1.838073 GAGTGGTTGGGTGGGATCGT 61.838 60.000 0.00 0.00 0.00 3.73
4014 6504 1.376812 GTGGTTGGGTGGGATCGTC 60.377 63.158 0.00 0.00 0.00 4.20
4015 6505 2.125269 GGTTGGGTGGGATCGTCG 60.125 66.667 0.00 0.00 0.00 5.12
4016 6506 2.125269 GTTGGGTGGGATCGTCGG 60.125 66.667 0.00 0.00 0.00 4.79
4017 6507 2.605295 TTGGGTGGGATCGTCGGT 60.605 61.111 0.00 0.00 0.00 4.69
4018 6508 2.218454 TTGGGTGGGATCGTCGGTT 61.218 57.895 0.00 0.00 0.00 4.44
4019 6509 1.770749 TTGGGTGGGATCGTCGGTTT 61.771 55.000 0.00 0.00 0.00 3.27
4020 6510 1.743995 GGGTGGGATCGTCGGTTTG 60.744 63.158 0.00 0.00 0.00 2.93
4021 6511 1.004200 GGTGGGATCGTCGGTTTGT 60.004 57.895 0.00 0.00 0.00 2.83
4022 6512 1.296056 GGTGGGATCGTCGGTTTGTG 61.296 60.000 0.00 0.00 0.00 3.33
4023 6513 0.320073 GTGGGATCGTCGGTTTGTGA 60.320 55.000 0.00 0.00 0.00 3.58
4024 6514 0.320073 TGGGATCGTCGGTTTGTGAC 60.320 55.000 0.00 0.00 0.00 3.67
4032 6522 2.257034 GTCGGTTTGTGACGATCTACC 58.743 52.381 0.00 0.00 41.53 3.18
4033 6523 1.887854 TCGGTTTGTGACGATCTACCA 59.112 47.619 0.00 0.00 33.69 3.25
4034 6524 2.494471 TCGGTTTGTGACGATCTACCAT 59.506 45.455 0.00 0.00 33.69 3.55
4035 6525 3.695556 TCGGTTTGTGACGATCTACCATA 59.304 43.478 0.00 0.00 33.69 2.74
4036 6526 3.795101 CGGTTTGTGACGATCTACCATAC 59.205 47.826 0.00 0.00 0.00 2.39
4037 6527 4.675933 CGGTTTGTGACGATCTACCATACA 60.676 45.833 0.00 0.00 0.00 2.29
4038 6528 5.172934 GGTTTGTGACGATCTACCATACAA 58.827 41.667 0.00 0.00 0.00 2.41
4039 6529 5.815740 GGTTTGTGACGATCTACCATACAAT 59.184 40.000 0.00 0.00 0.00 2.71
4040 6530 6.018994 GGTTTGTGACGATCTACCATACAATC 60.019 42.308 0.00 0.00 0.00 2.67
4041 6531 6.465439 TTGTGACGATCTACCATACAATCT 57.535 37.500 0.00 0.00 0.00 2.40
4042 6532 6.073327 TGTGACGATCTACCATACAATCTC 57.927 41.667 0.00 0.00 0.00 2.75
4043 6533 5.828328 TGTGACGATCTACCATACAATCTCT 59.172 40.000 0.00 0.00 0.00 3.10
4044 6534 6.321435 TGTGACGATCTACCATACAATCTCTT 59.679 38.462 0.00 0.00 0.00 2.85
4045 6535 6.638873 GTGACGATCTACCATACAATCTCTTG 59.361 42.308 0.00 0.00 38.39 3.02
4081 6571 8.380743 TCTCTCTTCTATAAAGCTAAGGTACG 57.619 38.462 0.00 0.00 0.00 3.67
4082 6572 6.968250 TCTCTTCTATAAAGCTAAGGTACGC 58.032 40.000 0.00 0.00 0.00 4.42
4083 6573 6.016443 TCTCTTCTATAAAGCTAAGGTACGCC 60.016 42.308 0.00 0.00 0.00 5.68
4084 6574 5.595542 TCTTCTATAAAGCTAAGGTACGCCA 59.404 40.000 0.00 0.00 37.19 5.69
4085 6575 6.267014 TCTTCTATAAAGCTAAGGTACGCCAT 59.733 38.462 0.00 0.00 37.19 4.40
4086 6576 6.415206 TCTATAAAGCTAAGGTACGCCATT 57.585 37.500 0.00 0.00 37.19 3.16
4087 6577 6.220930 TCTATAAAGCTAAGGTACGCCATTG 58.779 40.000 0.00 0.00 37.19 2.82
4088 6578 2.038387 AAGCTAAGGTACGCCATTGG 57.962 50.000 0.00 0.00 37.19 3.16
4089 6579 0.463833 AGCTAAGGTACGCCATTGGC 60.464 55.000 18.10 18.10 46.75 4.52
4098 6588 3.706140 GCCATTGGCGTACTCTCG 58.294 61.111 12.82 0.00 39.62 4.04
4099 6589 1.141019 GCCATTGGCGTACTCTCGA 59.859 57.895 12.82 0.00 39.62 4.04
4100 6590 0.459585 GCCATTGGCGTACTCTCGAA 60.460 55.000 12.82 0.00 39.62 3.71
4101 6591 2.004583 CCATTGGCGTACTCTCGAAA 57.995 50.000 0.00 0.00 0.00 3.46
4102 6592 2.343101 CCATTGGCGTACTCTCGAAAA 58.657 47.619 0.00 0.00 0.00 2.29
4103 6593 2.739913 CCATTGGCGTACTCTCGAAAAA 59.260 45.455 0.00 0.00 0.00 1.94
4183 6673 4.030452 GCCGTGTGGTCTTGCTGC 62.030 66.667 0.00 0.00 37.67 5.25
4344 6834 0.402121 GGTTGGAAGCTCTCAAGGGT 59.598 55.000 2.42 0.00 0.00 4.34
4453 6943 2.291930 TGTTGAGGGGTCTGTTGGTTTT 60.292 45.455 0.00 0.00 0.00 2.43
4499 6989 2.225091 TGTGGGCATGGAAGATTTGAGT 60.225 45.455 0.00 0.00 0.00 3.41
4504 6994 4.021192 GGGCATGGAAGATTTGAGTTTTGA 60.021 41.667 0.00 0.00 0.00 2.69
4629 7120 5.650543 GTGGAAAGTCACTTGTTGTTCAAT 58.349 37.500 0.00 0.00 35.35 2.57
4666 7158 6.551385 AGTCTGTTGAATGTTGATGACTTC 57.449 37.500 0.00 0.00 30.54 3.01
4765 7279 3.388024 TCTGTAAGTGGCCATGATACCTC 59.612 47.826 9.72 0.00 33.76 3.85
4781 7295 5.941058 TGATACCTCTATGCTCTAGTACTGC 59.059 44.000 5.39 0.59 0.00 4.40
4789 7303 8.105097 TCTATGCTCTAGTACTGCTAATCAAG 57.895 38.462 5.39 0.00 0.00 3.02
4878 7393 5.473066 TGTGTGAAGAGATTCTCATGTCA 57.527 39.130 15.83 12.17 32.06 3.58
4895 7410 2.107031 TGTCAGCCCATGGATAGGATTG 59.893 50.000 15.22 0.75 0.00 2.67
4930 7445 4.299586 TGTCAATCACCTTGCATCCTTA 57.700 40.909 0.00 0.00 34.66 2.69
5008 7523 8.850454 AATTACGGCAAACAATTGACATATAC 57.150 30.769 13.59 0.00 45.46 1.47
5012 7527 8.896320 ACGGCAAACAATTGACATATACTATA 57.104 30.769 13.59 0.00 45.46 1.31
5048 7564 5.540911 ACAAATTTGCTGGTTCACATTAGG 58.459 37.500 18.12 0.00 0.00 2.69
5161 7681 8.090788 AGTTTCCAGTATGACAGGTATACATT 57.909 34.615 5.01 0.00 39.69 2.71
5162 7682 9.209048 AGTTTCCAGTATGACAGGTATACATTA 57.791 33.333 5.01 0.00 39.69 1.90
5224 7744 2.821969 GAGGTCAGGAACATTGCACAAT 59.178 45.455 0.00 0.00 0.00 2.71
5305 7825 6.018425 CCGAGTTCACCTCATTGATTTCATAG 60.018 42.308 0.00 0.00 40.48 2.23
5333 7857 2.748132 CGCCCAAAGCCCTCAATATACA 60.748 50.000 0.00 0.00 38.78 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 1.474330 CCAGTTTAATGGGGTGGAGC 58.526 55.000 0.00 0.00 36.64 4.70
46 47 2.165437 TGATTTTGGGCTGCCGAAATAC 59.835 45.455 26.01 21.57 34.88 1.89
53 54 1.551883 AGAATGTGATTTTGGGCTGCC 59.448 47.619 11.05 11.05 0.00 4.85
73 74 5.023452 TGGTTTTAGGTAGATGAGCTCTCA 58.977 41.667 16.19 1.67 44.59 3.27
75 76 6.374417 TTTGGTTTTAGGTAGATGAGCTCT 57.626 37.500 16.19 0.00 37.09 4.09
127 128 2.662006 TCTCCACTCTGAATCTTGCG 57.338 50.000 0.00 0.00 0.00 4.85
191 192 0.472044 GAGAGGAGGAATGGAAGGCC 59.528 60.000 0.00 0.00 0.00 5.19
192 193 0.472044 GGAGAGGAGGAATGGAAGGC 59.528 60.000 0.00 0.00 0.00 4.35
193 194 1.885049 TGGAGAGGAGGAATGGAAGG 58.115 55.000 0.00 0.00 0.00 3.46
194 195 2.036992 CGATGGAGAGGAGGAATGGAAG 59.963 54.545 0.00 0.00 0.00 3.46
195 196 2.042464 CGATGGAGAGGAGGAATGGAA 58.958 52.381 0.00 0.00 0.00 3.53
196 197 1.709578 CGATGGAGAGGAGGAATGGA 58.290 55.000 0.00 0.00 0.00 3.41
197 198 0.034616 GCGATGGAGAGGAGGAATGG 59.965 60.000 0.00 0.00 0.00 3.16
198 199 0.319383 CGCGATGGAGAGGAGGAATG 60.319 60.000 0.00 0.00 0.00 2.67
199 200 2.045280 CGCGATGGAGAGGAGGAAT 58.955 57.895 0.00 0.00 0.00 3.01
200 201 2.786495 GCGCGATGGAGAGGAGGAA 61.786 63.158 12.10 0.00 0.00 3.36
201 202 3.219928 GCGCGATGGAGAGGAGGA 61.220 66.667 12.10 0.00 0.00 3.71
202 203 1.456196 TAAGCGCGATGGAGAGGAGG 61.456 60.000 12.10 0.00 0.00 4.30
203 204 0.600557 ATAAGCGCGATGGAGAGGAG 59.399 55.000 12.10 0.00 0.00 3.69
204 205 0.598562 GATAAGCGCGATGGAGAGGA 59.401 55.000 12.10 0.00 0.00 3.71
205 206 0.315251 TGATAAGCGCGATGGAGAGG 59.685 55.000 12.10 0.00 0.00 3.69
206 207 1.413382 GTGATAAGCGCGATGGAGAG 58.587 55.000 12.10 0.00 0.00 3.20
207 208 0.032130 GGTGATAAGCGCGATGGAGA 59.968 55.000 12.10 0.00 0.00 3.71
208 209 1.278172 CGGTGATAAGCGCGATGGAG 61.278 60.000 12.10 0.00 0.00 3.86
209 210 1.299850 CGGTGATAAGCGCGATGGA 60.300 57.895 12.10 0.00 0.00 3.41
210 211 2.943345 GCGGTGATAAGCGCGATGG 61.943 63.158 12.10 0.00 0.00 3.51
211 212 2.546321 GCGGTGATAAGCGCGATG 59.454 61.111 12.10 0.00 0.00 3.84
212 213 2.661866 GGCGGTGATAAGCGCGAT 60.662 61.111 19.86 0.00 0.00 4.58
308 332 2.160205 CAGTTAGGTGAGTCCTCGTCA 58.840 52.381 0.00 0.00 44.42 4.35
405 429 2.234908 CTCCCCTCGTTCACAAATCTCT 59.765 50.000 0.00 0.00 0.00 3.10
406 430 2.233922 TCTCCCCTCGTTCACAAATCTC 59.766 50.000 0.00 0.00 0.00 2.75
407 431 2.028020 GTCTCCCCTCGTTCACAAATCT 60.028 50.000 0.00 0.00 0.00 2.40
408 432 2.028020 AGTCTCCCCTCGTTCACAAATC 60.028 50.000 0.00 0.00 0.00 2.17
409 433 1.978580 AGTCTCCCCTCGTTCACAAAT 59.021 47.619 0.00 0.00 0.00 2.32
410 434 1.420430 AGTCTCCCCTCGTTCACAAA 58.580 50.000 0.00 0.00 0.00 2.83
411 435 1.070134 CAAGTCTCCCCTCGTTCACAA 59.930 52.381 0.00 0.00 0.00 3.33
412 436 0.679505 CAAGTCTCCCCTCGTTCACA 59.320 55.000 0.00 0.00 0.00 3.58
413 437 0.680061 ACAAGTCTCCCCTCGTTCAC 59.320 55.000 0.00 0.00 0.00 3.18
414 438 0.679505 CACAAGTCTCCCCTCGTTCA 59.320 55.000 0.00 0.00 0.00 3.18
415 439 0.966920 TCACAAGTCTCCCCTCGTTC 59.033 55.000 0.00 0.00 0.00 3.95
416 440 1.070289 GTTCACAAGTCTCCCCTCGTT 59.930 52.381 0.00 0.00 0.00 3.85
417 441 0.680061 GTTCACAAGTCTCCCCTCGT 59.320 55.000 0.00 0.00 0.00 4.18
418 442 0.388649 CGTTCACAAGTCTCCCCTCG 60.389 60.000 0.00 0.00 0.00 4.63
419 443 0.037232 CCGTTCACAAGTCTCCCCTC 60.037 60.000 0.00 0.00 0.00 4.30
420 444 1.481056 CCCGTTCACAAGTCTCCCCT 61.481 60.000 0.00 0.00 0.00 4.79
421 445 1.003718 CCCGTTCACAAGTCTCCCC 60.004 63.158 0.00 0.00 0.00 4.81
422 446 1.003718 CCCCGTTCACAAGTCTCCC 60.004 63.158 0.00 0.00 0.00 4.30
423 447 0.037232 CTCCCCGTTCACAAGTCTCC 60.037 60.000 0.00 0.00 0.00 3.71
424 448 0.966920 TCTCCCCGTTCACAAGTCTC 59.033 55.000 0.00 0.00 0.00 3.36
425 449 0.680061 GTCTCCCCGTTCACAAGTCT 59.320 55.000 0.00 0.00 0.00 3.24
426 450 0.680061 AGTCTCCCCGTTCACAAGTC 59.320 55.000 0.00 0.00 0.00 3.01
427 451 1.129058 AAGTCTCCCCGTTCACAAGT 58.871 50.000 0.00 0.00 0.00 3.16
428 452 1.202651 ACAAGTCTCCCCGTTCACAAG 60.203 52.381 0.00 0.00 0.00 3.16
429 453 0.834612 ACAAGTCTCCCCGTTCACAA 59.165 50.000 0.00 0.00 0.00 3.33
430 454 0.391597 GACAAGTCTCCCCGTTCACA 59.608 55.000 0.00 0.00 0.00 3.58
431 455 0.320508 GGACAAGTCTCCCCGTTCAC 60.321 60.000 0.00 0.00 0.00 3.18
432 456 0.761323 TGGACAAGTCTCCCCGTTCA 60.761 55.000 0.00 0.00 0.00 3.18
433 457 0.320508 GTGGACAAGTCTCCCCGTTC 60.321 60.000 0.00 0.00 0.00 3.95
434 458 0.763223 AGTGGACAAGTCTCCCCGTT 60.763 55.000 0.00 0.00 0.00 4.44
435 459 1.152312 AGTGGACAAGTCTCCCCGT 60.152 57.895 0.00 0.00 0.00 5.28
436 460 1.293498 CAGTGGACAAGTCTCCCCG 59.707 63.158 0.00 0.00 0.00 5.73
437 461 0.765510 AACAGTGGACAAGTCTCCCC 59.234 55.000 0.00 0.00 0.00 4.81
438 462 3.260884 TCATAACAGTGGACAAGTCTCCC 59.739 47.826 0.00 0.00 0.00 4.30
520 580 3.947841 GTGCGCGGTCACTTTGCA 61.948 61.111 8.83 0.00 34.29 4.08
618 678 2.543777 ACGGTGCAAATACAGTCACT 57.456 45.000 0.00 0.00 0.00 3.41
619 679 3.619233 AAACGGTGCAAATACAGTCAC 57.381 42.857 0.00 0.00 0.00 3.67
620 680 3.793801 GCAAAACGGTGCAAATACAGTCA 60.794 43.478 0.00 0.00 44.29 3.41
621 681 2.724174 GCAAAACGGTGCAAATACAGTC 59.276 45.455 0.00 0.00 44.29 3.51
622 682 2.738135 GCAAAACGGTGCAAATACAGT 58.262 42.857 0.00 0.00 44.29 3.55
631 691 2.033832 CACTGAATTTGCAAAACGGTGC 60.034 45.455 30.11 12.92 45.15 5.01
632 692 3.242712 GTCACTGAATTTGCAAAACGGTG 59.757 43.478 32.47 32.47 37.18 4.94
633 693 3.443976 GTCACTGAATTTGCAAAACGGT 58.556 40.909 17.19 19.47 0.00 4.83
634 694 2.794350 GGTCACTGAATTTGCAAAACGG 59.206 45.455 17.19 18.86 0.00 4.44
635 695 3.242712 GTGGTCACTGAATTTGCAAAACG 59.757 43.478 17.19 11.52 0.00 3.60
636 696 4.180057 TGTGGTCACTGAATTTGCAAAAC 58.820 39.130 17.19 13.58 0.00 2.43
637 697 4.462508 TGTGGTCACTGAATTTGCAAAA 57.537 36.364 17.19 0.00 0.00 2.44
638 698 4.462508 TTGTGGTCACTGAATTTGCAAA 57.537 36.364 15.44 15.44 0.00 3.68
639 699 4.462508 TTTGTGGTCACTGAATTTGCAA 57.537 36.364 0.00 0.00 0.00 4.08
640 700 4.370049 CATTTGTGGTCACTGAATTTGCA 58.630 39.130 2.66 0.00 0.00 4.08
641 701 3.184986 GCATTTGTGGTCACTGAATTTGC 59.815 43.478 2.66 2.87 0.00 3.68
642 702 3.426191 CGCATTTGTGGTCACTGAATTTG 59.574 43.478 2.66 0.00 0.00 2.32
643 703 3.068024 ACGCATTTGTGGTCACTGAATTT 59.932 39.130 2.66 0.00 0.00 1.82
644 704 2.622942 ACGCATTTGTGGTCACTGAATT 59.377 40.909 2.66 0.00 0.00 2.17
645 705 2.229792 ACGCATTTGTGGTCACTGAAT 58.770 42.857 2.66 1.15 0.00 2.57
646 706 1.674359 ACGCATTTGTGGTCACTGAA 58.326 45.000 2.66 0.00 0.00 3.02
647 707 2.535012 TACGCATTTGTGGTCACTGA 57.465 45.000 2.66 0.00 0.00 3.41
648 708 3.829886 AATACGCATTTGTGGTCACTG 57.170 42.857 2.66 0.00 0.00 3.66
649 709 4.545610 CAAAATACGCATTTGTGGTCACT 58.454 39.130 0.00 0.00 34.53 3.41
650 710 3.121113 GCAAAATACGCATTTGTGGTCAC 59.879 43.478 0.00 0.00 39.42 3.67
651 711 3.243535 TGCAAAATACGCATTTGTGGTCA 60.244 39.130 0.00 0.00 39.42 4.02
652 712 3.312828 TGCAAAATACGCATTTGTGGTC 58.687 40.909 0.00 0.00 39.42 4.02
653 713 3.377346 TGCAAAATACGCATTTGTGGT 57.623 38.095 0.00 0.00 39.42 4.16
654 714 3.740321 AGTTGCAAAATACGCATTTGTGG 59.260 39.130 0.00 0.00 39.58 4.17
655 715 4.970472 AGTTGCAAAATACGCATTTGTG 57.030 36.364 0.00 0.00 39.58 3.33
656 716 5.293079 ACAAAGTTGCAAAATACGCATTTGT 59.707 32.000 0.00 9.76 42.96 2.83
657 717 5.616383 CACAAAGTTGCAAAATACGCATTTG 59.384 36.000 0.00 8.77 41.65 2.32
658 718 5.736338 CACAAAGTTGCAAAATACGCATTT 58.264 33.333 0.00 0.00 39.58 2.32
659 719 4.318689 GCACAAAGTTGCAAAATACGCATT 60.319 37.500 0.00 0.00 42.49 3.56
660 720 3.184178 GCACAAAGTTGCAAAATACGCAT 59.816 39.130 0.00 0.00 42.49 4.73
661 721 2.537625 GCACAAAGTTGCAAAATACGCA 59.462 40.909 0.00 0.00 42.49 5.24
662 722 3.153966 GCACAAAGTTGCAAAATACGC 57.846 42.857 0.00 0.00 42.49 4.42
677 737 1.617850 GGATGGTCATTTGGTGCACAA 59.382 47.619 20.43 3.78 37.28 3.33
678 738 1.255882 GGATGGTCATTTGGTGCACA 58.744 50.000 20.43 1.62 0.00 4.57
679 739 1.203052 CTGGATGGTCATTTGGTGCAC 59.797 52.381 8.80 8.80 0.00 4.57
680 740 1.203038 ACTGGATGGTCATTTGGTGCA 60.203 47.619 0.00 0.00 0.00 4.57
681 741 1.203052 CACTGGATGGTCATTTGGTGC 59.797 52.381 0.00 0.00 0.00 5.01
682 742 1.203052 GCACTGGATGGTCATTTGGTG 59.797 52.381 0.00 0.00 0.00 4.17
683 743 1.203038 TGCACTGGATGGTCATTTGGT 60.203 47.619 0.00 0.00 0.00 3.67
684 744 1.548081 TGCACTGGATGGTCATTTGG 58.452 50.000 0.00 0.00 0.00 3.28
685 745 2.559668 ACTTGCACTGGATGGTCATTTG 59.440 45.455 0.00 0.00 0.00 2.32
686 746 2.880443 ACTTGCACTGGATGGTCATTT 58.120 42.857 0.00 0.00 0.00 2.32
687 747 2.592102 ACTTGCACTGGATGGTCATT 57.408 45.000 0.00 0.00 0.00 2.57
688 748 2.040813 AGAACTTGCACTGGATGGTCAT 59.959 45.455 4.60 0.00 0.00 3.06
689 749 1.421268 AGAACTTGCACTGGATGGTCA 59.579 47.619 4.60 0.00 0.00 4.02
690 750 2.191128 AGAACTTGCACTGGATGGTC 57.809 50.000 0.00 0.00 0.00 4.02
691 751 3.327757 TCTTAGAACTTGCACTGGATGGT 59.672 43.478 0.00 0.00 0.00 3.55
692 752 3.686726 GTCTTAGAACTTGCACTGGATGG 59.313 47.826 0.00 0.00 0.00 3.51
693 753 3.686726 GGTCTTAGAACTTGCACTGGATG 59.313 47.826 0.00 0.00 0.00 3.51
694 754 3.327757 TGGTCTTAGAACTTGCACTGGAT 59.672 43.478 0.00 0.00 0.00 3.41
695 755 2.703536 TGGTCTTAGAACTTGCACTGGA 59.296 45.455 0.00 0.00 0.00 3.86
696 756 3.126001 TGGTCTTAGAACTTGCACTGG 57.874 47.619 0.00 0.00 0.00 4.00
697 757 3.438087 CCATGGTCTTAGAACTTGCACTG 59.562 47.826 2.57 0.00 0.00 3.66
698 758 3.560025 CCCATGGTCTTAGAACTTGCACT 60.560 47.826 11.73 0.00 0.00 4.40
699 759 2.749621 CCCATGGTCTTAGAACTTGCAC 59.250 50.000 11.73 0.00 0.00 4.57
700 760 2.375174 ACCCATGGTCTTAGAACTTGCA 59.625 45.455 11.73 0.00 0.00 4.08
701 761 2.749621 CACCCATGGTCTTAGAACTTGC 59.250 50.000 11.73 0.00 31.02 4.01
702 762 4.021102 ACACCCATGGTCTTAGAACTTG 57.979 45.455 11.73 6.22 31.02 3.16
703 763 6.388619 AATACACCCATGGTCTTAGAACTT 57.611 37.500 11.73 0.00 31.02 2.66
704 764 6.388619 AAATACACCCATGGTCTTAGAACT 57.611 37.500 11.73 0.00 31.02 3.01
705 765 6.257193 CGTAAATACACCCATGGTCTTAGAAC 59.743 42.308 11.73 0.00 31.02 3.01
706 766 6.070653 ACGTAAATACACCCATGGTCTTAGAA 60.071 38.462 11.73 0.00 31.02 2.10
707 767 5.422970 ACGTAAATACACCCATGGTCTTAGA 59.577 40.000 11.73 0.00 31.02 2.10
708 768 5.667466 ACGTAAATACACCCATGGTCTTAG 58.333 41.667 11.73 0.00 31.02 2.18
709 769 5.422970 AGACGTAAATACACCCATGGTCTTA 59.577 40.000 11.73 0.00 31.02 2.10
710 770 4.224370 AGACGTAAATACACCCATGGTCTT 59.776 41.667 11.73 0.00 31.02 3.01
711 771 3.773119 AGACGTAAATACACCCATGGTCT 59.227 43.478 11.73 0.00 31.02 3.85
712 772 4.133013 AGACGTAAATACACCCATGGTC 57.867 45.455 11.73 0.00 31.02 4.02
713 773 4.563140 AAGACGTAAATACACCCATGGT 57.437 40.909 11.73 0.00 35.62 3.55
714 774 5.890424 AAAAGACGTAAATACACCCATGG 57.110 39.130 4.14 4.14 0.00 3.66
715 775 9.680315 TTTTAAAAAGACGTAAATACACCCATG 57.320 29.630 0.00 0.00 0.00 3.66
716 776 9.902196 CTTTTAAAAAGACGTAAATACACCCAT 57.098 29.630 1.66 0.00 0.00 4.00
717 777 8.351461 CCTTTTAAAAAGACGTAAATACACCCA 58.649 33.333 1.66 0.00 0.00 4.51
718 778 8.352201 ACCTTTTAAAAAGACGTAAATACACCC 58.648 33.333 3.55 0.00 0.00 4.61
849 909 9.712359 GACGATCTAAACAGTAAAGTTGTTTTT 57.288 29.630 8.43 0.00 44.04 1.94
850 910 8.340443 GGACGATCTAAACAGTAAAGTTGTTTT 58.660 33.333 8.43 0.00 44.04 2.43
851 911 7.041576 GGGACGATCTAAACAGTAAAGTTGTTT 60.042 37.037 8.23 8.23 46.95 2.83
852 912 6.426025 GGGACGATCTAAACAGTAAAGTTGTT 59.574 38.462 0.00 0.00 40.30 2.83
853 913 5.930569 GGGACGATCTAAACAGTAAAGTTGT 59.069 40.000 0.00 0.00 0.00 3.32
854 914 5.929992 TGGGACGATCTAAACAGTAAAGTTG 59.070 40.000 0.00 0.00 0.00 3.16
855 915 6.105397 TGGGACGATCTAAACAGTAAAGTT 57.895 37.500 0.00 0.00 0.00 2.66
856 916 5.733620 TGGGACGATCTAAACAGTAAAGT 57.266 39.130 0.00 0.00 0.00 2.66
857 917 5.753921 GGATGGGACGATCTAAACAGTAAAG 59.246 44.000 0.00 0.00 0.00 1.85
858 918 5.188163 TGGATGGGACGATCTAAACAGTAAA 59.812 40.000 0.00 0.00 0.00 2.01
859 919 4.712829 TGGATGGGACGATCTAAACAGTAA 59.287 41.667 0.00 0.00 0.00 2.24
860 920 4.283337 TGGATGGGACGATCTAAACAGTA 58.717 43.478 0.00 0.00 0.00 2.74
861 921 3.104512 TGGATGGGACGATCTAAACAGT 58.895 45.455 0.00 0.00 0.00 3.55
862 922 3.819564 TGGATGGGACGATCTAAACAG 57.180 47.619 0.00 0.00 0.00 3.16
863 923 3.071023 GGATGGATGGGACGATCTAAACA 59.929 47.826 0.00 0.00 0.00 2.83
864 924 3.071023 TGGATGGATGGGACGATCTAAAC 59.929 47.826 0.00 0.00 0.00 2.01
865 925 3.071023 GTGGATGGATGGGACGATCTAAA 59.929 47.826 0.00 0.00 0.00 1.85
866 926 2.632996 GTGGATGGATGGGACGATCTAA 59.367 50.000 0.00 0.00 0.00 2.10
867 927 2.248248 GTGGATGGATGGGACGATCTA 58.752 52.381 0.00 0.00 0.00 1.98
868 928 1.051812 GTGGATGGATGGGACGATCT 58.948 55.000 0.00 0.00 0.00 2.75
956 1017 1.300233 GATCTGGGTCGACGGATGC 60.300 63.158 17.61 1.78 36.62 3.91
1080 1148 2.677228 CCGAGGATGGCCACCTTT 59.323 61.111 22.78 2.15 37.93 3.11
1244 1312 2.833582 GAGGAGGGCGATGTCGGA 60.834 66.667 4.44 0.00 40.23 4.55
1312 1401 2.045045 TCCGCCATGAAGCCCTTG 60.045 61.111 0.00 0.00 0.00 3.61
1513 1602 5.634896 CAATCAACCATTAGAGCAACAGAC 58.365 41.667 0.00 0.00 0.00 3.51
1524 1613 3.370840 AGCCAGAGCAATCAACCATTA 57.629 42.857 0.00 0.00 43.56 1.90
1525 1614 2.226962 AGCCAGAGCAATCAACCATT 57.773 45.000 0.00 0.00 43.56 3.16
1537 1626 1.519719 GCACCCAGAGTAGCCAGAG 59.480 63.158 0.00 0.00 0.00 3.35
1645 1734 5.803461 TGGTCTTCGTACTGATAATCAAACG 59.197 40.000 0.00 0.00 37.25 3.60
1658 1747 6.418226 CAGCAGATAAGTATTGGTCTTCGTAC 59.582 42.308 0.00 0.00 0.00 3.67
1809 2003 4.157656 GTCCAGGCTAATGCACAAACATTA 59.842 41.667 0.00 0.00 40.64 1.90
1820 2014 6.029346 AGTTTTCATTTGTCCAGGCTAATG 57.971 37.500 9.95 9.95 34.51 1.90
1850 2044 5.053145 CAGTGAGGCAATCCAGAGTAATAC 58.947 45.833 0.00 0.00 33.74 1.89
1852 2046 3.521126 ACAGTGAGGCAATCCAGAGTAAT 59.479 43.478 0.00 0.00 33.74 1.89
1982 2404 0.482446 ACAGGTTGAGGAATGGGCAA 59.518 50.000 0.00 0.00 0.00 4.52
2013 2435 3.969466 TTGAAGGAATGGGCCATATGA 57.031 42.857 21.54 0.00 0.00 2.15
2056 2478 2.431782 ACATTATGCATTGGAGGTTGGC 59.568 45.455 3.54 0.00 0.00 4.52
2092 2791 3.740044 ACGATTTCCTAACGCAACATG 57.260 42.857 0.00 0.00 0.00 3.21
2250 3257 1.609208 AAACTTCAGCAGCAATCGGT 58.391 45.000 0.00 0.00 0.00 4.69
2467 3474 1.034838 AACGTCCACAGCTGCCAAAA 61.035 50.000 15.27 0.00 0.00 2.44
2896 4122 6.742559 TGAGTTATTAGGGTTAGGGTGATC 57.257 41.667 0.00 0.00 0.00 2.92
3085 4319 5.415701 TCCTCAGTTAGCATGGTTTTTCATC 59.584 40.000 1.12 0.00 0.00 2.92
3086 4320 5.324409 TCCTCAGTTAGCATGGTTTTTCAT 58.676 37.500 1.12 0.00 0.00 2.57
3087 4321 4.724399 TCCTCAGTTAGCATGGTTTTTCA 58.276 39.130 1.12 0.00 0.00 2.69
3088 4322 5.904362 ATCCTCAGTTAGCATGGTTTTTC 57.096 39.130 1.12 0.00 0.00 2.29
3395 5264 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
3396 5265 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
3397 5266 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
3398 5267 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
3399 5268 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
3400 5269 2.223876 GCGTCTTACATTATGGGACGGA 60.224 50.000 25.20 5.94 46.26 4.69
3401 5270 2.132762 GCGTCTTACATTATGGGACGG 58.867 52.381 25.20 14.78 46.26 4.79
3403 5272 5.813080 AAAAGCGTCTTACATTATGGGAC 57.187 39.130 0.00 1.75 0.00 4.46
3404 5273 7.390996 TGTTAAAAAGCGTCTTACATTATGGGA 59.609 33.333 0.00 0.00 0.00 4.37
3405 5274 7.483691 GTGTTAAAAAGCGTCTTACATTATGGG 59.516 37.037 0.00 0.00 0.00 4.00
3406 5275 8.234546 AGTGTTAAAAAGCGTCTTACATTATGG 58.765 33.333 0.00 0.00 0.00 2.74
3409 5278 9.480053 ACTAGTGTTAAAAAGCGTCTTACATTA 57.520 29.630 0.00 0.00 0.00 1.90
3410 5279 8.280497 CACTAGTGTTAAAAAGCGTCTTACATT 58.720 33.333 15.06 0.00 0.00 2.71
3411 5280 7.440255 ACACTAGTGTTAAAAAGCGTCTTACAT 59.560 33.333 22.95 0.00 41.83 2.29
3412 5281 6.757947 ACACTAGTGTTAAAAAGCGTCTTACA 59.242 34.615 22.95 0.00 41.83 2.41
3413 5282 7.170240 ACACTAGTGTTAAAAAGCGTCTTAC 57.830 36.000 22.95 0.00 41.83 2.34
3414 5283 8.137437 ACTACACTAGTGTTAAAAAGCGTCTTA 58.863 33.333 32.15 9.27 41.83 2.10
3415 5284 6.982724 ACTACACTAGTGTTAAAAAGCGTCTT 59.017 34.615 32.15 5.99 41.83 3.01
3416 5285 6.510536 ACTACACTAGTGTTAAAAAGCGTCT 58.489 36.000 32.15 6.43 41.83 4.18
3417 5286 6.760161 ACTACACTAGTGTTAAAAAGCGTC 57.240 37.500 32.15 0.00 41.83 5.19
3445 5314 7.322664 TCCGTCCTATAATGTAAGACGTTTTT 58.677 34.615 9.63 0.00 46.62 1.94
3446 5315 6.866480 TCCGTCCTATAATGTAAGACGTTTT 58.134 36.000 9.63 0.00 46.62 2.43
3447 5316 6.455360 TCCGTCCTATAATGTAAGACGTTT 57.545 37.500 9.63 0.00 46.62 3.60
3448 5317 5.009410 CCTCCGTCCTATAATGTAAGACGTT 59.991 44.000 9.63 0.00 46.62 3.99
3449 5318 4.518211 CCTCCGTCCTATAATGTAAGACGT 59.482 45.833 9.63 0.00 46.62 4.34
3451 5320 5.075493 TCCCTCCGTCCTATAATGTAAGAC 58.925 45.833 0.00 0.00 0.00 3.01
3452 5321 5.163012 ACTCCCTCCGTCCTATAATGTAAGA 60.163 44.000 0.00 0.00 0.00 2.10
3453 5322 5.078256 ACTCCCTCCGTCCTATAATGTAAG 58.922 45.833 0.00 0.00 0.00 2.34
3454 5323 5.070823 ACTCCCTCCGTCCTATAATGTAA 57.929 43.478 0.00 0.00 0.00 2.41
3455 5324 4.736611 ACTCCCTCCGTCCTATAATGTA 57.263 45.455 0.00 0.00 0.00 2.29
3456 5325 3.614568 ACTCCCTCCGTCCTATAATGT 57.385 47.619 0.00 0.00 0.00 2.71
3457 5326 4.664392 ACTACTCCCTCCGTCCTATAATG 58.336 47.826 0.00 0.00 0.00 1.90
3458 5327 6.217074 TGATACTACTCCCTCCGTCCTATAAT 59.783 42.308 0.00 0.00 0.00 1.28
3459 5328 5.549228 TGATACTACTCCCTCCGTCCTATAA 59.451 44.000 0.00 0.00 0.00 0.98
3460 5329 5.096521 TGATACTACTCCCTCCGTCCTATA 58.903 45.833 0.00 0.00 0.00 1.31
3461 5330 3.915073 TGATACTACTCCCTCCGTCCTAT 59.085 47.826 0.00 0.00 0.00 2.57
3462 5331 3.321039 TGATACTACTCCCTCCGTCCTA 58.679 50.000 0.00 0.00 0.00 2.94
3463 5332 2.133520 TGATACTACTCCCTCCGTCCT 58.866 52.381 0.00 0.00 0.00 3.85
3464 5333 2.653234 TGATACTACTCCCTCCGTCC 57.347 55.000 0.00 0.00 0.00 4.79
3465 5334 4.036616 GTCTTTGATACTACTCCCTCCGTC 59.963 50.000 0.00 0.00 0.00 4.79
3466 5335 3.952967 GTCTTTGATACTACTCCCTCCGT 59.047 47.826 0.00 0.00 0.00 4.69
3467 5336 3.952323 TGTCTTTGATACTACTCCCTCCG 59.048 47.826 0.00 0.00 0.00 4.63
3468 5337 6.487299 AATGTCTTTGATACTACTCCCTCC 57.513 41.667 0.00 0.00 0.00 4.30
3469 5338 8.794335 AAAAATGTCTTTGATACTACTCCCTC 57.206 34.615 0.00 0.00 0.00 4.30
3470 5339 8.606830 AGAAAAATGTCTTTGATACTACTCCCT 58.393 33.333 0.00 0.00 0.00 4.20
3471 5340 8.794335 AGAAAAATGTCTTTGATACTACTCCC 57.206 34.615 0.00 0.00 0.00 4.30
3472 5341 9.660180 AGAGAAAAATGTCTTTGATACTACTCC 57.340 33.333 0.00 0.00 0.00 3.85
3604 5473 2.243810 TGGATTTAACAACCCAGCCAC 58.756 47.619 0.00 0.00 0.00 5.01
3682 5788 9.677567 GCTTAAAAATGTCAAAGATAACAGTGA 57.322 29.630 0.00 0.00 0.00 3.41
3707 5814 2.099756 GGTCATATCCAAACAAGGCAGC 59.900 50.000 0.00 0.00 0.00 5.25
3714 5821 9.699410 AATCAATTCTAAGGTCATATCCAAACA 57.301 29.630 0.00 0.00 0.00 2.83
3922 6412 7.359595 CGTGGAGAATACTCTAGAAGATTCAG 58.640 42.308 20.49 1.39 42.28 3.02
3956 6446 4.510571 ACTACTCACAAAAACGTTGGACT 58.489 39.130 0.00 0.00 0.00 3.85
3959 6449 3.302870 CGGACTACTCACAAAAACGTTGG 60.303 47.826 0.00 0.00 0.00 3.77
3963 6453 2.132762 AGCGGACTACTCACAAAAACG 58.867 47.619 0.00 0.00 0.00 3.60
3964 6454 4.151867 CCTAAGCGGACTACTCACAAAAAC 59.848 45.833 0.00 0.00 33.16 2.43
3965 6455 4.312443 CCTAAGCGGACTACTCACAAAAA 58.688 43.478 0.00 0.00 33.16 1.94
3966 6456 3.306502 CCCTAAGCGGACTACTCACAAAA 60.307 47.826 0.00 0.00 33.16 2.44
3967 6457 2.232941 CCCTAAGCGGACTACTCACAAA 59.767 50.000 0.00 0.00 33.16 2.83
3968 6458 1.822990 CCCTAAGCGGACTACTCACAA 59.177 52.381 0.00 0.00 33.16 3.33
3969 6459 1.272313 ACCCTAAGCGGACTACTCACA 60.272 52.381 0.00 0.00 33.16 3.58
3970 6460 1.472188 ACCCTAAGCGGACTACTCAC 58.528 55.000 0.00 0.00 33.16 3.51
3971 6461 2.422519 CCTACCCTAAGCGGACTACTCA 60.423 54.545 0.00 0.00 33.16 3.41
3972 6462 2.228925 CCTACCCTAAGCGGACTACTC 58.771 57.143 0.00 0.00 33.16 2.59
3973 6463 1.133544 CCCTACCCTAAGCGGACTACT 60.134 57.143 0.00 0.00 33.16 2.57
3974 6464 1.326328 CCCTACCCTAAGCGGACTAC 58.674 60.000 0.00 0.00 33.16 2.73
3975 6465 0.186873 CCCCTACCCTAAGCGGACTA 59.813 60.000 0.00 0.00 33.16 2.59
3976 6466 1.075450 CCCCTACCCTAAGCGGACT 60.075 63.158 0.00 0.00 33.16 3.85
3977 6467 1.075748 TCCCCTACCCTAAGCGGAC 60.076 63.158 0.00 0.00 33.16 4.79
3978 6468 1.232216 CTCCCCTACCCTAAGCGGA 59.768 63.158 0.00 0.00 33.16 5.54
3979 6469 1.075450 ACTCCCCTACCCTAAGCGG 60.075 63.158 0.00 0.00 0.00 5.52
3980 6470 1.400530 CCACTCCCCTACCCTAAGCG 61.401 65.000 0.00 0.00 0.00 4.68
3981 6471 0.326332 ACCACTCCCCTACCCTAAGC 60.326 60.000 0.00 0.00 0.00 3.09
3982 6472 1.838077 CAACCACTCCCCTACCCTAAG 59.162 57.143 0.00 0.00 0.00 2.18
3983 6473 1.556238 CCAACCACTCCCCTACCCTAA 60.556 57.143 0.00 0.00 0.00 2.69
3984 6474 0.043637 CCAACCACTCCCCTACCCTA 59.956 60.000 0.00 0.00 0.00 3.53
3985 6475 1.229853 CCAACCACTCCCCTACCCT 60.230 63.158 0.00 0.00 0.00 4.34
3986 6476 2.306384 CCCAACCACTCCCCTACCC 61.306 68.421 0.00 0.00 0.00 3.69
3987 6477 1.540617 ACCCAACCACTCCCCTACC 60.541 63.158 0.00 0.00 0.00 3.18
3988 6478 1.683441 CACCCAACCACTCCCCTAC 59.317 63.158 0.00 0.00 0.00 3.18
3989 6479 1.540367 CCACCCAACCACTCCCCTA 60.540 63.158 0.00 0.00 0.00 3.53
3990 6480 2.858974 CCACCCAACCACTCCCCT 60.859 66.667 0.00 0.00 0.00 4.79
3991 6481 3.979497 CCCACCCAACCACTCCCC 61.979 72.222 0.00 0.00 0.00 4.81
3992 6482 2.211468 GATCCCACCCAACCACTCCC 62.211 65.000 0.00 0.00 0.00 4.30
3993 6483 1.303282 GATCCCACCCAACCACTCC 59.697 63.158 0.00 0.00 0.00 3.85
3994 6484 1.078426 CGATCCCACCCAACCACTC 60.078 63.158 0.00 0.00 0.00 3.51
3995 6485 1.838073 GACGATCCCACCCAACCACT 61.838 60.000 0.00 0.00 0.00 4.00
3996 6486 1.376812 GACGATCCCACCCAACCAC 60.377 63.158 0.00 0.00 0.00 4.16
3997 6487 2.949909 CGACGATCCCACCCAACCA 61.950 63.158 0.00 0.00 0.00 3.67
3998 6488 2.125269 CGACGATCCCACCCAACC 60.125 66.667 0.00 0.00 0.00 3.77
3999 6489 2.125269 CCGACGATCCCACCCAAC 60.125 66.667 0.00 0.00 0.00 3.77
4000 6490 1.770749 AAACCGACGATCCCACCCAA 61.771 55.000 0.00 0.00 0.00 4.12
4001 6491 2.218454 AAACCGACGATCCCACCCA 61.218 57.895 0.00 0.00 0.00 4.51
4002 6492 1.743995 CAAACCGACGATCCCACCC 60.744 63.158 0.00 0.00 0.00 4.61
4003 6493 1.004200 ACAAACCGACGATCCCACC 60.004 57.895 0.00 0.00 0.00 4.61
4004 6494 0.320073 TCACAAACCGACGATCCCAC 60.320 55.000 0.00 0.00 0.00 4.61
4005 6495 0.320073 GTCACAAACCGACGATCCCA 60.320 55.000 0.00 0.00 0.00 4.37
4006 6496 2.452767 GTCACAAACCGACGATCCC 58.547 57.895 0.00 0.00 0.00 3.85
4012 6502 2.257034 GGTAGATCGTCACAAACCGAC 58.743 52.381 0.00 0.00 35.69 4.79
4013 6503 1.887854 TGGTAGATCGTCACAAACCGA 59.112 47.619 0.00 0.00 37.51 4.69
4014 6504 2.357327 TGGTAGATCGTCACAAACCG 57.643 50.000 0.00 0.00 0.00 4.44
4015 6505 4.751060 TGTATGGTAGATCGTCACAAACC 58.249 43.478 0.00 0.00 0.00 3.27
4016 6506 6.757010 AGATTGTATGGTAGATCGTCACAAAC 59.243 38.462 0.00 0.00 0.00 2.93
4017 6507 6.873997 AGATTGTATGGTAGATCGTCACAAA 58.126 36.000 0.00 0.00 0.00 2.83
4018 6508 6.321435 AGAGATTGTATGGTAGATCGTCACAA 59.679 38.462 0.00 0.00 0.00 3.33
4019 6509 5.828328 AGAGATTGTATGGTAGATCGTCACA 59.172 40.000 0.00 0.00 0.00 3.58
4020 6510 6.320494 AGAGATTGTATGGTAGATCGTCAC 57.680 41.667 0.00 0.00 0.00 3.67
4021 6511 6.321435 ACAAGAGATTGTATGGTAGATCGTCA 59.679 38.462 0.00 0.00 32.60 4.35
4022 6512 6.740110 ACAAGAGATTGTATGGTAGATCGTC 58.260 40.000 0.00 0.00 32.60 4.20
4023 6513 6.716934 ACAAGAGATTGTATGGTAGATCGT 57.283 37.500 0.00 0.00 32.60 3.73
4055 6545 8.838365 CGTACCTTAGCTTTATAGAAGAGAGAA 58.162 37.037 0.00 0.00 0.00 2.87
4056 6546 7.041235 GCGTACCTTAGCTTTATAGAAGAGAGA 60.041 40.741 0.00 0.00 0.00 3.10
4057 6547 7.079475 GCGTACCTTAGCTTTATAGAAGAGAG 58.921 42.308 0.00 0.00 0.00 3.20
4058 6548 6.016443 GGCGTACCTTAGCTTTATAGAAGAGA 60.016 42.308 0.00 0.00 0.00 3.10
4059 6549 6.151004 GGCGTACCTTAGCTTTATAGAAGAG 58.849 44.000 0.00 0.00 0.00 2.85
4060 6550 5.595542 TGGCGTACCTTAGCTTTATAGAAGA 59.404 40.000 0.00 0.00 36.63 2.87
4061 6551 5.839621 TGGCGTACCTTAGCTTTATAGAAG 58.160 41.667 0.00 0.00 36.63 2.85
4062 6552 5.857471 TGGCGTACCTTAGCTTTATAGAA 57.143 39.130 0.00 0.00 36.63 2.10
4063 6553 6.220930 CAATGGCGTACCTTAGCTTTATAGA 58.779 40.000 0.00 0.00 36.63 1.98
4064 6554 5.408604 CCAATGGCGTACCTTAGCTTTATAG 59.591 44.000 0.00 0.00 36.63 1.31
4065 6555 5.302360 CCAATGGCGTACCTTAGCTTTATA 58.698 41.667 0.00 0.00 36.63 0.98
4066 6556 4.134563 CCAATGGCGTACCTTAGCTTTAT 58.865 43.478 0.00 0.00 36.63 1.40
4067 6557 3.537580 CCAATGGCGTACCTTAGCTTTA 58.462 45.455 0.00 0.00 36.63 1.85
4068 6558 2.365582 CCAATGGCGTACCTTAGCTTT 58.634 47.619 0.00 0.00 36.63 3.51
4069 6559 2.017113 GCCAATGGCGTACCTTAGCTT 61.017 52.381 9.14 0.00 39.62 3.74
4070 6560 0.463833 GCCAATGGCGTACCTTAGCT 60.464 55.000 9.14 0.00 39.62 3.32
4071 6561 2.022520 GCCAATGGCGTACCTTAGC 58.977 57.895 9.14 0.00 39.62 3.09
4081 6571 0.459585 TTCGAGAGTACGCCAATGGC 60.460 55.000 15.52 15.52 46.75 4.40
4082 6572 2.004583 TTTCGAGAGTACGCCAATGG 57.995 50.000 0.00 0.00 0.00 3.16
4103 6593 7.229506 CACACAAAGGAGAGATAGGTTCTTTTT 59.770 37.037 0.00 0.00 33.74 1.94
4104 6594 6.712547 CACACAAAGGAGAGATAGGTTCTTTT 59.287 38.462 0.00 0.00 33.74 2.27
4105 6595 6.043243 TCACACAAAGGAGAGATAGGTTCTTT 59.957 38.462 0.00 0.00 33.74 2.52
4106 6596 5.544176 TCACACAAAGGAGAGATAGGTTCTT 59.456 40.000 0.00 0.00 33.74 2.52
4107 6597 5.087323 TCACACAAAGGAGAGATAGGTTCT 58.913 41.667 0.00 0.00 37.41 3.01
4323 6813 0.695347 CCTTGAGAGCTTCCAACCCT 59.305 55.000 0.00 0.00 0.00 4.34
4344 6834 6.150641 CCTTCTCAATTGAAGATTTGAGCTCA 59.849 38.462 13.74 13.74 45.41 4.26
4383 6873 5.582689 AATGGCCTAACTAACTTGCATTC 57.417 39.130 3.32 0.00 0.00 2.67
4453 6943 1.032014 GGCAGAAAAAGCACTGGACA 58.968 50.000 0.00 0.00 35.05 4.02
4499 6989 4.152580 GCCGCCGGAAATTTTATTTCAAAA 59.847 37.500 7.68 0.00 0.00 2.44
4504 6994 1.202817 ACGCCGCCGGAAATTTTATTT 59.797 42.857 7.68 0.00 39.22 1.40
4629 7120 0.601046 CAGACTTGCAAGCAGACCGA 60.601 55.000 26.27 0.00 0.00 4.69
4666 7158 4.335315 TGGAACTAACTGAAAGCACAACAG 59.665 41.667 0.00 0.00 37.60 3.16
4709 7201 7.012138 AGCATCAAATGACTGACATGAGATTAC 59.988 37.037 0.00 0.00 39.39 1.89
4717 7209 3.086282 TGCAGCATCAAATGACTGACAT 58.914 40.909 12.45 0.00 41.45 3.06
4765 7279 7.807433 CACTTGATTAGCAGTACTAGAGCATAG 59.193 40.741 6.47 0.00 30.79 2.23
4781 7295 7.409697 CGAATCAAATACCCACACTTGATTAG 58.590 38.462 8.44 5.74 44.49 1.73
4789 7303 2.088423 TGGCGAATCAAATACCCACAC 58.912 47.619 0.00 0.00 0.00 3.82
4818 7332 6.183359 GCGATTGAAACAGAAATACTTTGCTG 60.183 38.462 0.00 0.00 34.65 4.41
4878 7393 3.979501 AAACAATCCTATCCATGGGCT 57.020 42.857 13.02 2.14 0.00 5.19
4895 7410 6.646240 AGGTGATTGACAAATGCAACATAAAC 59.354 34.615 0.00 0.00 0.00 2.01
4953 7468 2.785713 TGACTGTCATCGTCGTCAAA 57.214 45.000 6.36 0.00 33.84 2.69
5019 7534 5.069648 TGTGAACCAGCAAATTTGTATCCAA 59.930 36.000 19.03 0.00 0.00 3.53
5020 7535 4.586421 TGTGAACCAGCAAATTTGTATCCA 59.414 37.500 19.03 7.76 0.00 3.41
5022 7537 7.489113 CCTAATGTGAACCAGCAAATTTGTATC 59.511 37.037 19.03 10.72 28.99 2.24
5037 7552 2.916716 CGCATTGTTGCCTAATGTGAAC 59.083 45.455 10.81 0.00 46.57 3.18
5095 7615 2.997986 GCATCTGCACATTGGAAAAAGG 59.002 45.455 0.00 0.00 41.59 3.11
5121 7641 9.886132 ATACTGGAAACTAGAAAATCGTATGTT 57.114 29.630 0.00 0.00 0.00 2.71
5161 7681 4.101114 TGAACTCTCCCTGGCAATAAGTA 58.899 43.478 0.00 0.00 0.00 2.24
5162 7682 2.912956 TGAACTCTCCCTGGCAATAAGT 59.087 45.455 0.00 0.00 0.00 2.24
5167 7687 2.237143 CACTATGAACTCTCCCTGGCAA 59.763 50.000 0.00 0.00 0.00 4.52
5168 7688 1.833630 CACTATGAACTCTCCCTGGCA 59.166 52.381 0.00 0.00 0.00 4.92
5224 7744 4.816385 CGAGCAGCATTCCCTAATTTTAGA 59.184 41.667 0.00 0.00 32.47 2.10
5305 7825 3.443925 GGCTTTGGGCGAAGAGGC 61.444 66.667 3.74 3.56 42.94 4.70
5333 7857 8.709308 AGTAGTATTCTGGAGCAATATTGTTCT 58.291 33.333 25.52 12.53 38.32 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.