Multiple sequence alignment - TraesCS3D01G235900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G235900 chr3D 100.000 3525 0 0 1 3525 326234817 326231293 0.000000e+00 6510.0
1 TraesCS3D01G235900 chr3A 92.429 2100 113 23 646 2730 438636751 438638819 0.000000e+00 2955.0
2 TraesCS3D01G235900 chr3A 90.282 638 35 9 6 642 438636046 438636657 0.000000e+00 809.0
3 TraesCS3D01G235900 chr3A 88.191 398 41 6 2795 3188 438639002 438639397 1.480000e-128 470.0
4 TraesCS3D01G235900 chr7D 76.596 282 56 8 1926 2202 597965975 597966251 2.840000e-31 147.0
5 TraesCS3D01G235900 chr7D 74.704 253 49 12 1028 1271 597546424 597546178 8.050000e-17 99.0
6 TraesCS3D01G235900 chr7D 81.061 132 17 6 1028 1155 597570244 597570117 8.050000e-17 99.0
7 TraesCS3D01G235900 chr7D 84.848 66 10 0 1688 1753 597569561 597569496 2.270000e-07 67.6
8 TraesCS3D01G235900 chr7B 76.703 279 55 8 1929 2202 676210225 676209952 2.840000e-31 147.0
9 TraesCS3D01G235900 chr7B 90.323 62 6 0 1692 1753 676424767 676424828 8.110000e-12 82.4
10 TraesCS3D01G235900 chr7A 76.703 279 55 8 1929 2202 690194970 690194697 2.840000e-31 147.0
11 TraesCS3D01G235900 chr7A 74.419 258 51 12 1022 1270 690517272 690517523 2.900000e-16 97.1
12 TraesCS3D01G235900 chr7A 74.231 260 50 14 1022 1271 690438747 690438999 3.750000e-15 93.5
13 TraesCS3D01G235900 chr7A 100.000 30 0 0 657 686 21886000 21886029 4.920000e-04 56.5
14 TraesCS3D01G235900 chr5D 97.436 39 1 0 645 683 448142267 448142305 2.270000e-07 67.6
15 TraesCS3D01G235900 chr5D 100.000 28 0 0 659 686 155902727 155902700 6.000000e-03 52.8
16 TraesCS3D01G235900 chr3B 93.478 46 2 1 641 686 181287056 181287100 2.270000e-07 67.6
17 TraesCS3D01G235900 chr2D 100.000 28 0 0 659 686 134807829 134807856 6.000000e-03 52.8
18 TraesCS3D01G235900 chr2A 100.000 28 0 0 657 684 721520549 721520522 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G235900 chr3D 326231293 326234817 3524 True 6510.000000 6510 100.000000 1 3525 1 chr3D.!!$R1 3524
1 TraesCS3D01G235900 chr3A 438636046 438639397 3351 False 1411.333333 2955 90.300667 6 3188 3 chr3A.!!$F1 3182

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
398 399 1.089920 GCACATCTGTTGGCTAGTGG 58.910 55.0 0.0 0.0 0.00 4.00 F
1155 1246 0.034337 ACACCGGCAACTTCGTGTAT 59.966 50.0 0.0 0.0 37.26 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1828 1942 0.39113 GATGGCGTGTAAGCACCTGA 60.391 55.0 0.00 0.00 42.39 3.86 R
2775 2895 0.02970 TATACGTGTATGTGCGCGCT 59.970 50.0 33.29 15.25 45.06 5.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.777101 TTTCTTCCAAAATTGCGCCG 58.223 45.000 4.18 0.00 0.00 6.46
95 96 7.765360 GTCCAGAATTTGCATTTCCATTTGATA 59.235 33.333 6.35 0.00 0.00 2.15
147 148 6.373495 ACCAAAGTCTATATTTTTGTCGTCCC 59.627 38.462 0.00 0.00 31.55 4.46
159 160 7.527084 TTTTTGTCGTCCCAAATAAGTTTTG 57.473 32.000 0.00 0.00 34.50 2.44
162 163 6.210287 TGTCGTCCCAAATAAGTTTTGTTT 57.790 33.333 0.00 0.00 0.00 2.83
164 165 6.127703 TGTCGTCCCAAATAAGTTTTGTTTGA 60.128 34.615 11.13 0.00 42.24 2.69
165 166 6.752815 GTCGTCCCAAATAAGTTTTGTTTGAA 59.247 34.615 11.13 0.00 42.24 2.69
166 167 6.975772 TCGTCCCAAATAAGTTTTGTTTGAAG 59.024 34.615 11.13 4.54 42.24 3.02
167 168 6.754675 CGTCCCAAATAAGTTTTGTTTGAAGT 59.245 34.615 11.13 0.00 42.24 3.01
168 169 7.276878 CGTCCCAAATAAGTTTTGTTTGAAGTT 59.723 33.333 11.13 0.00 42.24 2.66
179 180 8.076178 AGTTTTGTTTGAAGTTATTGAGGATCG 58.924 33.333 0.00 0.00 38.61 3.69
180 181 6.494893 TTGTTTGAAGTTATTGAGGATCGG 57.505 37.500 0.00 0.00 38.61 4.18
190 191 6.488683 AGTTATTGAGGATCGGTTGTGAAAAA 59.511 34.615 0.00 0.00 38.61 1.94
191 192 5.982890 ATTGAGGATCGGTTGTGAAAAAT 57.017 34.783 0.00 0.00 38.61 1.82
192 193 8.455682 GTTATTGAGGATCGGTTGTGAAAAATA 58.544 33.333 0.00 0.00 38.61 1.40
193 194 7.645058 ATTGAGGATCGGTTGTGAAAAATAT 57.355 32.000 0.00 0.00 38.61 1.28
194 195 6.435430 TGAGGATCGGTTGTGAAAAATATG 57.565 37.500 0.00 0.00 38.61 1.78
195 196 5.163663 TGAGGATCGGTTGTGAAAAATATGC 60.164 40.000 0.00 0.00 38.61 3.14
196 197 4.704540 AGGATCGGTTGTGAAAAATATGCA 59.295 37.500 0.00 0.00 0.00 3.96
197 198 5.360714 AGGATCGGTTGTGAAAAATATGCAT 59.639 36.000 3.79 3.79 0.00 3.96
374 375 4.928661 ACATTGTGTGCGTCTTTCTATC 57.071 40.909 0.00 0.00 0.00 2.08
398 399 1.089920 GCACATCTGTTGGCTAGTGG 58.910 55.000 0.00 0.00 0.00 4.00
411 412 2.880890 GGCTAGTGGCATCCATTTGTAG 59.119 50.000 0.00 0.00 44.01 2.74
421 422 4.458989 GCATCCATTTGTAGAAGTGTTGGA 59.541 41.667 0.00 0.00 36.32 3.53
509 510 2.743636 CCAGTTCGGCAGTTTCTAGA 57.256 50.000 0.00 0.00 0.00 2.43
510 511 2.611518 CCAGTTCGGCAGTTTCTAGAG 58.388 52.381 0.00 0.00 0.00 2.43
511 512 2.028930 CCAGTTCGGCAGTTTCTAGAGT 60.029 50.000 0.00 0.00 0.00 3.24
512 513 3.246619 CAGTTCGGCAGTTTCTAGAGTC 58.753 50.000 0.00 0.00 0.00 3.36
513 514 2.891580 AGTTCGGCAGTTTCTAGAGTCA 59.108 45.455 0.00 0.00 0.00 3.41
514 515 3.321111 AGTTCGGCAGTTTCTAGAGTCAA 59.679 43.478 0.00 0.00 0.00 3.18
515 516 3.299340 TCGGCAGTTTCTAGAGTCAAC 57.701 47.619 0.00 0.00 0.00 3.18
516 517 2.029290 TCGGCAGTTTCTAGAGTCAACC 60.029 50.000 2.77 0.00 0.00 3.77
517 518 2.288825 CGGCAGTTTCTAGAGTCAACCA 60.289 50.000 2.77 0.00 0.00 3.67
518 519 3.330267 GGCAGTTTCTAGAGTCAACCAG 58.670 50.000 2.77 0.00 0.00 4.00
519 520 3.244249 GGCAGTTTCTAGAGTCAACCAGT 60.244 47.826 2.77 0.00 0.00 4.00
520 521 3.743396 GCAGTTTCTAGAGTCAACCAGTG 59.257 47.826 2.77 0.00 0.00 3.66
521 522 4.310769 CAGTTTCTAGAGTCAACCAGTGG 58.689 47.826 7.91 7.91 0.00 4.00
623 624 5.761205 TGGTACAATTAATGTATGTGCCCT 58.239 37.500 17.91 0.00 45.71 5.19
627 628 4.947388 ACAATTAATGTATGTGCCCTCGTT 59.053 37.500 0.00 0.00 41.63 3.85
628 629 5.065988 ACAATTAATGTATGTGCCCTCGTTC 59.934 40.000 0.00 0.00 41.63 3.95
642 643 4.092091 GCCCTCGTTCGATTTGATATCATC 59.908 45.833 6.17 1.08 0.00 2.92
643 644 4.324669 CCCTCGTTCGATTTGATATCATCG 59.675 45.833 18.46 18.46 43.05 3.84
644 645 4.324669 CCTCGTTCGATTTGATATCATCGG 59.675 45.833 22.23 11.10 42.16 4.18
721 812 9.574516 AACTGTATTATTAAGATTAAGGGCTGG 57.425 33.333 0.00 0.00 0.00 4.85
722 813 7.665974 ACTGTATTATTAAGATTAAGGGCTGGC 59.334 37.037 0.00 0.00 0.00 4.85
723 814 6.653320 TGTATTATTAAGATTAAGGGCTGGCG 59.347 38.462 0.00 0.00 0.00 5.69
724 815 3.857157 ATTAAGATTAAGGGCTGGCGA 57.143 42.857 0.00 0.00 0.00 5.54
725 816 2.614829 TAAGATTAAGGGCTGGCGAC 57.385 50.000 0.00 0.00 0.00 5.19
850 941 6.835914 AGAAACGCAAGAAATGTATCTTCAG 58.164 36.000 0.00 0.00 37.56 3.02
854 945 6.582636 ACGCAAGAAATGTATCTTCAGGATA 58.417 36.000 0.00 0.00 37.56 2.59
857 948 7.411264 CGCAAGAAATGTATCTTCAGGATATCG 60.411 40.741 0.00 0.00 37.56 2.92
858 949 7.148507 GCAAGAAATGTATCTTCAGGATATCGG 60.149 40.741 0.00 0.00 37.56 4.18
859 950 7.546250 AGAAATGTATCTTCAGGATATCGGT 57.454 36.000 0.00 0.00 38.91 4.69
879 970 3.430374 GGTGTACTCACTGCCATCGTATT 60.430 47.826 0.00 0.00 43.41 1.89
884 975 3.131396 CTCACTGCCATCGTATTTACCC 58.869 50.000 0.00 0.00 0.00 3.69
926 1017 6.360618 CCTGAAGATGCTATAAAAAGGAGGT 58.639 40.000 0.00 0.00 0.00 3.85
937 1028 9.174166 GCTATAAAAAGGAGGTCAAATGAACTA 57.826 33.333 0.00 0.00 43.22 2.24
989 1080 2.375110 CTGCAAACGTTGTAGCAACAG 58.625 47.619 19.44 8.99 36.61 3.16
1016 1107 4.933064 GATGGCCTCGGAGCGTCG 62.933 72.222 3.32 0.00 0.00 5.12
1058 1149 3.518998 CATCCTCCTCGTCGCGGT 61.519 66.667 6.13 0.00 0.00 5.68
1065 1156 4.813526 CTCGTCGCGGTCGTCCTG 62.814 72.222 19.63 8.80 36.96 3.86
1114 1205 1.734465 GTTGCTACAAGCGCATCTTCT 59.266 47.619 11.47 0.00 46.26 2.85
1155 1246 0.034337 ACACCGGCAACTTCGTGTAT 59.966 50.000 0.00 0.00 37.26 2.29
1304 1399 5.545723 AGCACATGGATATAGCTACCTCTTT 59.454 40.000 0.00 0.00 33.06 2.52
1305 1400 5.641209 GCACATGGATATAGCTACCTCTTTG 59.359 44.000 0.00 1.41 0.00 2.77
1306 1401 6.742644 GCACATGGATATAGCTACCTCTTTGT 60.743 42.308 0.00 1.99 0.00 2.83
1307 1402 6.648310 CACATGGATATAGCTACCTCTTTGTG 59.352 42.308 16.50 16.50 0.00 3.33
1308 1403 5.215252 TGGATATAGCTACCTCTTTGTGC 57.785 43.478 0.00 0.00 0.00 4.57
1309 1404 4.901849 TGGATATAGCTACCTCTTTGTGCT 59.098 41.667 0.00 0.00 37.72 4.40
1310 1405 5.011125 TGGATATAGCTACCTCTTTGTGCTC 59.989 44.000 0.00 0.00 35.47 4.26
1311 1406 5.011125 GGATATAGCTACCTCTTTGTGCTCA 59.989 44.000 0.00 0.00 35.47 4.26
1312 1407 2.464157 AGCTACCTCTTTGTGCTCAC 57.536 50.000 0.00 0.00 0.00 3.51
1313 1408 1.694150 AGCTACCTCTTTGTGCTCACA 59.306 47.619 0.00 0.00 39.98 3.58
1440 1535 1.599518 ATTCGGTGCCAACTTCGCA 60.600 52.632 0.00 0.00 0.00 5.10
1476 1572 1.601419 CGCTTCCCCGGAGTACTTCA 61.601 60.000 0.73 0.00 0.00 3.02
1482 1578 3.178865 TCCCCGGAGTACTTCAAAAGAT 58.821 45.455 0.73 0.00 0.00 2.40
1491 1587 2.250924 ACTTCAAAAGATGGGGCCTTG 58.749 47.619 0.84 0.00 0.00 3.61
1512 1608 1.917336 TATTCCCGGGTCTGCCAACC 61.917 60.000 22.86 0.00 38.69 3.77
1544 1640 3.330701 AGATGGGCTGGTTCAAAGAAGTA 59.669 43.478 0.00 0.00 0.00 2.24
1545 1641 3.806949 TGGGCTGGTTCAAAGAAGTAT 57.193 42.857 0.00 0.00 0.00 2.12
1547 1643 5.249780 TGGGCTGGTTCAAAGAAGTATTA 57.750 39.130 0.00 0.00 0.00 0.98
1575 1671 2.192175 CACCAGGGCCCGGTAATC 59.808 66.667 30.05 1.36 34.02 1.75
1579 1675 1.035385 CCAGGGCCCGGTAATCAAAC 61.035 60.000 21.37 0.00 0.00 2.93
1588 1684 2.674357 CCGGTAATCAAACTAACCACGG 59.326 50.000 0.00 0.00 32.04 4.94
1590 1686 3.011818 GGTAATCAAACTAACCACGGGG 58.988 50.000 0.00 0.00 41.29 5.73
1610 1724 5.820947 CGGGGTTTAGCATATCAGTTTTAGT 59.179 40.000 0.00 0.00 0.00 2.24
1613 1727 8.618677 GGGGTTTAGCATATCAGTTTTAGTTAC 58.381 37.037 0.00 0.00 0.00 2.50
1614 1728 9.392259 GGGTTTAGCATATCAGTTTTAGTTACT 57.608 33.333 0.00 0.00 0.00 2.24
1634 1748 9.985730 AGTTACTAGAGTAGCTACTAGTACATG 57.014 37.037 25.95 15.70 45.60 3.21
1635 1749 9.979578 GTTACTAGAGTAGCTACTAGTACATGA 57.020 37.037 25.95 14.82 45.60 3.07
1673 1787 2.502213 TTGGGCTACGTACGATGATG 57.498 50.000 24.41 7.71 0.00 3.07
1801 1915 1.134371 GCCTACCAGTTCATCCCAGAC 60.134 57.143 0.00 0.00 0.00 3.51
1804 1918 1.933021 ACCAGTTCATCCCAGACGTA 58.067 50.000 0.00 0.00 0.00 3.57
1828 1942 2.615447 CAACCGCATCATCAGTATTGCT 59.385 45.455 0.00 0.00 32.97 3.91
1856 1970 2.700722 TACACGCCATCAATTAGCCA 57.299 45.000 0.00 0.00 0.00 4.75
1876 1990 5.418524 AGCCAGTACAAACAAATCATGCATA 59.581 36.000 0.00 0.00 0.00 3.14
1889 2003 9.797556 ACAAATCATGCATATATACATCAATGC 57.202 29.630 0.00 0.00 43.92 3.56
2013 2133 0.981183 TGCCCAAGTACCTGAACGAT 59.019 50.000 0.00 0.00 0.00 3.73
2061 2181 2.435586 CAGTTCGGCTGCCTCAGG 60.436 66.667 17.92 0.47 38.52 3.86
2102 2222 4.666532 GCACAACACGGCGCTGTC 62.667 66.667 21.45 2.84 0.00 3.51
2124 2244 1.079543 CGAGGTCAACAGGCTCAGG 60.080 63.158 0.00 0.00 0.00 3.86
2189 2309 0.883814 GCCGCCATGGAGATCTTCAG 60.884 60.000 18.40 0.00 42.00 3.02
2233 2353 3.692367 CGACGCCCGATCGCATTC 61.692 66.667 10.32 1.97 41.76 2.67
2245 2365 3.923461 CGATCGCATTCCTTCTCCTAATC 59.077 47.826 0.26 0.00 0.00 1.75
2246 2366 4.321601 CGATCGCATTCCTTCTCCTAATCT 60.322 45.833 0.26 0.00 0.00 2.40
2260 2380 5.473846 TCTCCTAATCTAAGCGGACTACATG 59.526 44.000 0.00 0.00 0.00 3.21
2263 2383 4.737855 AATCTAAGCGGACTACATGTGT 57.262 40.909 9.11 4.54 0.00 3.72
2264 2384 5.847111 AATCTAAGCGGACTACATGTGTA 57.153 39.130 9.11 0.00 0.00 2.90
2270 2390 3.055385 AGCGGACTACATGTGTATTTGGT 60.055 43.478 9.11 0.00 0.00 3.67
2312 2432 1.728672 GACCGTTTTGCGTTTGGGA 59.271 52.632 0.00 0.00 39.32 4.37
2476 2596 2.202878 AACGTCATCGCCGATGGG 60.203 61.111 25.40 19.38 40.15 4.00
2551 2671 0.881118 GATTGCTCGCTTTGTTCCCA 59.119 50.000 0.00 0.00 0.00 4.37
2569 2689 0.659427 CATACTTGCATCGGCCTGTG 59.341 55.000 0.00 0.00 40.13 3.66
2627 2747 7.667557 ACAGTATAGTACTTTGTCTTGCTCAA 58.332 34.615 0.00 0.00 36.76 3.02
2643 2763 2.286294 GCTCAATGCAGATTCACCGTAG 59.714 50.000 0.00 0.00 42.31 3.51
2647 2767 4.081917 TCAATGCAGATTCACCGTAGTACA 60.082 41.667 0.38 0.00 0.00 2.90
2648 2768 3.226346 TGCAGATTCACCGTAGTACAC 57.774 47.619 0.38 0.00 0.00 2.90
2650 2770 2.737679 GCAGATTCACCGTAGTACACCC 60.738 54.545 0.38 0.00 0.00 4.61
2670 2790 7.974504 ACACCCTCCGTCTCATAATATAAAAT 58.025 34.615 0.00 0.00 0.00 1.82
2696 2816 6.978674 TTTATATCATGAGACGAAGGGAGT 57.021 37.500 0.09 0.00 0.00 3.85
2698 2818 8.651589 TTTATATCATGAGACGAAGGGAGTAT 57.348 34.615 0.09 0.00 0.00 2.12
2699 2819 8.651589 TTATATCATGAGACGAAGGGAGTATT 57.348 34.615 0.09 0.00 0.00 1.89
2703 2823 7.361457 TCATGAGACGAAGGGAGTATTATTT 57.639 36.000 0.00 0.00 0.00 1.40
2705 2825 8.920174 TCATGAGACGAAGGGAGTATTATTTAA 58.080 33.333 0.00 0.00 0.00 1.52
2706 2826 9.197694 CATGAGACGAAGGGAGTATTATTTAAG 57.802 37.037 0.00 0.00 0.00 1.85
2707 2827 7.208080 TGAGACGAAGGGAGTATTATTTAAGC 58.792 38.462 0.00 0.00 0.00 3.09
2708 2828 7.069578 TGAGACGAAGGGAGTATTATTTAAGCT 59.930 37.037 0.00 0.00 0.00 3.74
2710 2830 8.921205 AGACGAAGGGAGTATTATTTAAGCTAA 58.079 33.333 0.00 0.00 0.00 3.09
2712 2832 9.708092 ACGAAGGGAGTATTATTTAAGCTAATC 57.292 33.333 0.00 0.00 0.00 1.75
2713 2833 8.861101 CGAAGGGAGTATTATTTAAGCTAATCG 58.139 37.037 0.00 0.00 0.00 3.34
2714 2834 9.708092 GAAGGGAGTATTATTTAAGCTAATCGT 57.292 33.333 0.00 0.00 0.00 3.73
2715 2835 9.708092 AAGGGAGTATTATTTAAGCTAATCGTC 57.292 33.333 0.00 0.00 0.00 4.20
2716 2836 8.867097 AGGGAGTATTATTTAAGCTAATCGTCA 58.133 33.333 0.00 0.00 0.00 4.35
2717 2837 9.654663 GGGAGTATTATTTAAGCTAATCGTCAT 57.345 33.333 0.00 0.00 0.00 3.06
2723 2843 6.692232 ATTTAAGCTAATCGTCATACTCGC 57.308 37.500 0.00 0.00 0.00 5.03
2724 2844 2.708386 AGCTAATCGTCATACTCGCC 57.292 50.000 0.00 0.00 0.00 5.54
2725 2845 2.231529 AGCTAATCGTCATACTCGCCT 58.768 47.619 0.00 0.00 0.00 5.52
2726 2846 3.409570 AGCTAATCGTCATACTCGCCTA 58.590 45.455 0.00 0.00 0.00 3.93
2727 2847 3.819337 AGCTAATCGTCATACTCGCCTAA 59.181 43.478 0.00 0.00 0.00 2.69
2728 2848 4.277672 AGCTAATCGTCATACTCGCCTAAA 59.722 41.667 0.00 0.00 0.00 1.85
2729 2849 4.382160 GCTAATCGTCATACTCGCCTAAAC 59.618 45.833 0.00 0.00 0.00 2.01
2730 2850 2.857592 TCGTCATACTCGCCTAAACC 57.142 50.000 0.00 0.00 0.00 3.27
2731 2851 1.406539 TCGTCATACTCGCCTAAACCC 59.593 52.381 0.00 0.00 0.00 4.11
2732 2852 1.407979 CGTCATACTCGCCTAAACCCT 59.592 52.381 0.00 0.00 0.00 4.34
2733 2853 2.159142 CGTCATACTCGCCTAAACCCTT 60.159 50.000 0.00 0.00 0.00 3.95
2734 2854 3.195661 GTCATACTCGCCTAAACCCTTG 58.804 50.000 0.00 0.00 0.00 3.61
2735 2855 2.835764 TCATACTCGCCTAAACCCTTGT 59.164 45.455 0.00 0.00 0.00 3.16
2736 2856 3.262405 TCATACTCGCCTAAACCCTTGTT 59.738 43.478 0.00 0.00 35.82 2.83
2737 2857 2.651382 ACTCGCCTAAACCCTTGTTT 57.349 45.000 0.00 0.00 46.22 2.83
2738 2858 2.501261 ACTCGCCTAAACCCTTGTTTC 58.499 47.619 0.00 0.00 43.50 2.78
2739 2859 2.158726 ACTCGCCTAAACCCTTGTTTCA 60.159 45.455 0.00 0.00 43.50 2.69
2740 2860 2.882137 CTCGCCTAAACCCTTGTTTCAA 59.118 45.455 0.00 0.00 43.50 2.69
2741 2861 3.288964 TCGCCTAAACCCTTGTTTCAAA 58.711 40.909 0.00 0.00 43.50 2.69
2742 2862 3.700038 TCGCCTAAACCCTTGTTTCAAAA 59.300 39.130 0.00 0.00 43.50 2.44
2743 2863 4.159879 TCGCCTAAACCCTTGTTTCAAAAA 59.840 37.500 0.00 0.00 43.50 1.94
2763 2883 6.380095 AAAAACATACTCGCCTAAACACAA 57.620 33.333 0.00 0.00 0.00 3.33
2764 2884 6.569179 AAAACATACTCGCCTAAACACAAT 57.431 33.333 0.00 0.00 0.00 2.71
2765 2885 7.675962 AAAACATACTCGCCTAAACACAATA 57.324 32.000 0.00 0.00 0.00 1.90
2766 2886 6.657836 AACATACTCGCCTAAACACAATAC 57.342 37.500 0.00 0.00 0.00 1.89
2768 2888 6.167685 ACATACTCGCCTAAACACAATACAA 58.832 36.000 0.00 0.00 0.00 2.41
2769 2889 6.091713 ACATACTCGCCTAAACACAATACAAC 59.908 38.462 0.00 0.00 0.00 3.32
2770 2890 4.638304 ACTCGCCTAAACACAATACAACT 58.362 39.130 0.00 0.00 0.00 3.16
2771 2891 5.061179 ACTCGCCTAAACACAATACAACTT 58.939 37.500 0.00 0.00 0.00 2.66
2772 2892 5.178809 ACTCGCCTAAACACAATACAACTTC 59.821 40.000 0.00 0.00 0.00 3.01
2775 2895 5.333492 CGCCTAAACACAATACAACTTCGAA 60.333 40.000 0.00 0.00 0.00 3.71
2776 2896 6.077838 GCCTAAACACAATACAACTTCGAAG 58.922 40.000 23.43 23.43 0.00 3.79
2777 2897 6.077838 CCTAAACACAATACAACTTCGAAGC 58.922 40.000 24.86 0.00 0.00 3.86
2779 2899 2.096417 ACACAATACAACTTCGAAGCGC 60.096 45.455 24.86 0.00 0.00 5.92
2780 2900 1.126113 ACAATACAACTTCGAAGCGCG 59.874 47.619 24.86 15.20 42.69 6.86
2781 2901 0.094730 AATACAACTTCGAAGCGCGC 59.905 50.000 26.66 26.66 40.61 6.86
2782 2902 1.011968 ATACAACTTCGAAGCGCGCA 61.012 50.000 35.10 9.85 40.61 6.09
2783 2903 1.882682 TACAACTTCGAAGCGCGCAC 61.883 55.000 35.10 24.51 40.61 5.34
2784 2904 2.964925 AACTTCGAAGCGCGCACA 60.965 55.556 35.10 10.79 40.61 4.57
2787 2907 1.013323 CTTCGAAGCGCGCACATAC 60.013 57.895 35.10 17.20 40.61 2.39
2789 2909 1.951181 TTCGAAGCGCGCACATACAC 61.951 55.000 35.10 14.03 40.61 2.90
2790 2910 2.020016 GAAGCGCGCACATACACG 59.980 61.111 35.10 0.00 0.00 4.49
2794 2914 0.029700 AGCGCGCACATACACGTATA 59.970 50.000 35.10 0.00 0.00 1.47
2796 2916 1.255859 GCGCGCACATACACGTATAAA 59.744 47.619 29.10 0.00 0.00 1.40
2799 2919 4.611516 CGCGCACATACACGTATAAATAC 58.388 43.478 8.75 0.00 0.00 1.89
2806 3073 7.637132 GCACATACACGTATAAATACACCAAAC 59.363 37.037 0.00 0.00 32.87 2.93
2824 3091 6.735957 CACCAAACATCAACGTTTTCTTTTTG 59.264 34.615 0.00 5.24 36.98 2.44
2871 3138 3.505502 GTGATGCGCACAGCCATACAC 62.506 57.143 14.90 9.37 46.91 2.90
2875 3142 2.108514 CGCACAGCCATACACCCAG 61.109 63.158 0.00 0.00 0.00 4.45
2887 3154 1.830279 ACACCCAGACATTGAGCATG 58.170 50.000 0.00 0.00 39.07 4.06
2893 3160 1.931841 CAGACATTGAGCATGAGACGG 59.068 52.381 0.00 0.00 36.24 4.79
2913 3181 4.175516 CGGGTCTAGCGTTTACATTGTAA 58.824 43.478 5.14 5.14 0.00 2.41
2918 3186 7.178074 GGTCTAGCGTTTACATTGTAAATGAC 58.822 38.462 31.57 24.42 0.00 3.06
2926 3194 8.495949 CGTTTACATTGTAAATGACACTCTCTT 58.504 33.333 26.69 0.00 37.96 2.85
2963 3233 9.455847 GAAATGATACTCTTTATTTGTCATGCC 57.544 33.333 0.00 0.00 0.00 4.40
2973 3243 3.490439 TTTGTCATGCCAAGACTCTGA 57.510 42.857 1.43 0.00 36.94 3.27
2975 3245 1.693606 TGTCATGCCAAGACTCTGACA 59.306 47.619 1.43 0.00 42.73 3.58
3004 3274 5.011431 TCACAACTCATCTCAATGTCTCACT 59.989 40.000 0.00 0.00 34.32 3.41
3006 3276 4.734398 ACTCATCTCAATGTCTCACTCC 57.266 45.455 0.00 0.00 34.32 3.85
3013 3283 5.684704 TCTCAATGTCTCACTCCAAAGTTT 58.315 37.500 0.00 0.00 31.71 2.66
3014 3284 5.528690 TCTCAATGTCTCACTCCAAAGTTTG 59.471 40.000 8.73 8.73 31.71 2.93
3036 3306 5.487433 TGGGCTATATAATCATTGGTGTCG 58.513 41.667 0.00 0.00 0.00 4.35
3039 3309 5.288712 GGCTATATAATCATTGGTGTCGACG 59.711 44.000 11.62 0.00 0.00 5.12
3052 3322 2.784380 GTGTCGACGACTAATGCATCTC 59.216 50.000 26.86 0.00 33.15 2.75
3075 3346 9.142515 TCTCGATCTTACGATTTACTAGAGATC 57.857 37.037 0.00 0.00 41.39 2.75
3077 3348 7.942145 GATCTTACGATTTACTAGAGATCGC 57.058 40.000 19.35 0.00 44.69 4.58
3078 3349 6.856135 TCTTACGATTTACTAGAGATCGCA 57.144 37.500 19.35 9.91 44.69 5.10
3082 3353 5.753744 ACGATTTACTAGAGATCGCAGAAG 58.246 41.667 19.35 0.00 44.69 2.85
3086 3357 7.095565 CGATTTACTAGAGATCGCAGAAGACTA 60.096 40.741 0.00 0.00 43.58 2.59
3087 3358 8.630054 ATTTACTAGAGATCGCAGAAGACTAT 57.370 34.615 0.00 0.00 43.58 2.12
3097 3368 5.877491 TCGCAGAAGACTATAGAGGGAATA 58.123 41.667 6.78 0.00 0.00 1.75
3100 3371 6.207810 CGCAGAAGACTATAGAGGGAATAGTT 59.792 42.308 6.78 0.00 39.65 2.24
3101 3372 7.390996 CGCAGAAGACTATAGAGGGAATAGTTA 59.609 40.741 6.78 0.00 39.65 2.24
3113 3384 3.139077 GGAATAGTTATGCCCGAAGTGG 58.861 50.000 0.00 0.00 37.55 4.00
3117 3388 1.207329 AGTTATGCCCGAAGTGGTCTC 59.793 52.381 0.00 0.00 35.15 3.36
3139 3410 1.721487 GGCGATGATGGTGAAACGG 59.279 57.895 0.00 0.00 38.12 4.44
3142 3413 0.726827 CGATGATGGTGAAACGGTGG 59.273 55.000 0.00 0.00 38.12 4.61
3143 3414 0.451783 GATGATGGTGAAACGGTGGC 59.548 55.000 0.00 0.00 38.12 5.01
3151 3422 1.471287 GTGAAACGGTGGCTTTATCCC 59.529 52.381 0.00 0.00 0.00 3.85
3152 3423 1.353022 TGAAACGGTGGCTTTATCCCT 59.647 47.619 0.00 0.00 0.00 4.20
3153 3424 1.743394 GAAACGGTGGCTTTATCCCTG 59.257 52.381 0.00 0.00 0.00 4.45
3188 3459 5.650543 CCCTATTTTTAGGTTGACATGTGC 58.349 41.667 1.15 0.00 35.45 4.57
3189 3460 5.418840 CCCTATTTTTAGGTTGACATGTGCT 59.581 40.000 1.15 0.00 35.45 4.40
3190 3461 6.404734 CCCTATTTTTAGGTTGACATGTGCTC 60.405 42.308 1.15 0.00 35.45 4.26
3191 3462 4.481930 TTTTTAGGTTGACATGTGCTCG 57.518 40.909 1.15 0.00 0.00 5.03
3192 3463 2.831685 TTAGGTTGACATGTGCTCGT 57.168 45.000 1.15 0.00 0.00 4.18
3193 3464 2.078849 TAGGTTGACATGTGCTCGTG 57.921 50.000 1.15 6.44 36.71 4.35
3194 3465 0.392706 AGGTTGACATGTGCTCGTGA 59.607 50.000 14.62 0.00 34.90 4.35
3195 3466 1.002430 AGGTTGACATGTGCTCGTGAT 59.998 47.619 14.62 0.00 34.90 3.06
3196 3467 1.806542 GGTTGACATGTGCTCGTGATT 59.193 47.619 14.62 0.00 34.90 2.57
3197 3468 3.000041 GGTTGACATGTGCTCGTGATTA 59.000 45.455 14.62 0.00 34.90 1.75
3198 3469 3.062639 GGTTGACATGTGCTCGTGATTAG 59.937 47.826 14.62 0.00 34.90 1.73
3199 3470 2.892374 TGACATGTGCTCGTGATTAGG 58.108 47.619 14.62 0.00 34.90 2.69
3200 3471 2.233676 TGACATGTGCTCGTGATTAGGT 59.766 45.455 14.62 0.00 34.90 3.08
3201 3472 3.445805 TGACATGTGCTCGTGATTAGGTA 59.554 43.478 14.62 0.00 34.90 3.08
3202 3473 4.045104 GACATGTGCTCGTGATTAGGTAG 58.955 47.826 14.62 0.00 34.90 3.18
3203 3474 2.579207 TGTGCTCGTGATTAGGTAGC 57.421 50.000 0.00 0.00 0.00 3.58
3204 3475 2.100197 TGTGCTCGTGATTAGGTAGCT 58.900 47.619 0.00 0.00 34.28 3.32
3205 3476 3.284617 TGTGCTCGTGATTAGGTAGCTA 58.715 45.455 0.00 0.00 34.28 3.32
3206 3477 3.315470 TGTGCTCGTGATTAGGTAGCTAG 59.685 47.826 1.31 0.00 34.28 3.42
3207 3478 2.293677 TGCTCGTGATTAGGTAGCTAGC 59.706 50.000 15.19 15.19 34.28 3.42
3208 3479 2.554893 GCTCGTGATTAGGTAGCTAGCT 59.445 50.000 27.23 27.23 37.80 3.32
3209 3480 3.004944 GCTCGTGATTAGGTAGCTAGCTT 59.995 47.826 28.98 13.60 35.39 3.74
3210 3481 4.789784 CTCGTGATTAGGTAGCTAGCTTC 58.210 47.826 28.98 21.20 35.39 3.86
3211 3482 3.250280 TCGTGATTAGGTAGCTAGCTTCG 59.750 47.826 28.98 22.38 35.39 3.79
3212 3483 3.609644 CGTGATTAGGTAGCTAGCTTCGG 60.610 52.174 28.98 13.91 35.39 4.30
3213 3484 2.891580 TGATTAGGTAGCTAGCTTCGGG 59.108 50.000 28.98 0.00 35.39 5.14
3214 3485 1.700955 TTAGGTAGCTAGCTTCGGGG 58.299 55.000 28.98 0.00 35.39 5.73
3215 3486 0.848735 TAGGTAGCTAGCTTCGGGGA 59.151 55.000 28.98 8.69 35.39 4.81
3216 3487 0.468400 AGGTAGCTAGCTTCGGGGAG 60.468 60.000 24.88 0.00 0.00 4.30
3217 3488 0.467659 GGTAGCTAGCTTCGGGGAGA 60.468 60.000 24.88 0.00 0.00 3.71
3218 3489 0.955905 GTAGCTAGCTTCGGGGAGAG 59.044 60.000 24.88 0.00 0.00 3.20
3219 3490 0.844660 TAGCTAGCTTCGGGGAGAGA 59.155 55.000 24.88 0.00 0.00 3.10
3220 3491 0.753848 AGCTAGCTTCGGGGAGAGAC 60.754 60.000 12.68 0.00 0.00 3.36
3221 3492 1.038130 GCTAGCTTCGGGGAGAGACA 61.038 60.000 7.70 0.00 0.00 3.41
3222 3493 1.475403 CTAGCTTCGGGGAGAGACAA 58.525 55.000 0.00 0.00 0.00 3.18
3223 3494 2.035632 CTAGCTTCGGGGAGAGACAAT 58.964 52.381 0.00 0.00 0.00 2.71
3224 3495 2.160721 AGCTTCGGGGAGAGACAATA 57.839 50.000 0.00 0.00 0.00 1.90
3225 3496 2.683768 AGCTTCGGGGAGAGACAATAT 58.316 47.619 0.00 0.00 0.00 1.28
3226 3497 2.366916 AGCTTCGGGGAGAGACAATATG 59.633 50.000 0.00 0.00 0.00 1.78
3227 3498 2.548920 GCTTCGGGGAGAGACAATATGG 60.549 54.545 0.00 0.00 0.00 2.74
3228 3499 2.471815 TCGGGGAGAGACAATATGGT 57.528 50.000 0.00 0.00 0.00 3.55
3229 3500 2.317040 TCGGGGAGAGACAATATGGTC 58.683 52.381 1.55 1.55 38.08 4.02
3247 3518 5.080969 TGGTCTATTGCTACCACAGTTAC 57.919 43.478 0.00 0.00 40.84 2.50
3248 3519 4.110482 GGTCTATTGCTACCACAGTTACG 58.890 47.826 0.00 0.00 35.73 3.18
3249 3520 4.381292 GGTCTATTGCTACCACAGTTACGT 60.381 45.833 0.00 0.00 35.73 3.57
3250 3521 4.561606 GTCTATTGCTACCACAGTTACGTG 59.438 45.833 0.00 1.54 36.61 4.49
3251 3522 3.671008 ATTGCTACCACAGTTACGTGA 57.329 42.857 0.00 0.00 39.34 4.35
3252 3523 3.455990 TTGCTACCACAGTTACGTGAA 57.544 42.857 0.00 0.00 39.34 3.18
3253 3524 2.746269 TGCTACCACAGTTACGTGAAC 58.254 47.619 0.00 0.00 39.34 3.18
3254 3525 1.717645 GCTACCACAGTTACGTGAACG 59.282 52.381 0.00 0.40 43.37 3.95
3268 3539 3.761657 CGTGAACGTAGCACCTATAACA 58.238 45.455 13.77 0.00 32.74 2.41
3269 3540 3.789756 CGTGAACGTAGCACCTATAACAG 59.210 47.826 13.77 0.00 32.74 3.16
3270 3541 4.673580 CGTGAACGTAGCACCTATAACAGT 60.674 45.833 13.77 0.00 32.74 3.55
3271 3542 4.797349 GTGAACGTAGCACCTATAACAGTC 59.203 45.833 9.62 0.00 0.00 3.51
3272 3543 4.460034 TGAACGTAGCACCTATAACAGTCA 59.540 41.667 0.00 0.00 0.00 3.41
3273 3544 5.047872 TGAACGTAGCACCTATAACAGTCAA 60.048 40.000 0.00 0.00 0.00 3.18
3274 3545 4.995124 ACGTAGCACCTATAACAGTCAAG 58.005 43.478 0.00 0.00 0.00 3.02
3275 3546 4.461781 ACGTAGCACCTATAACAGTCAAGT 59.538 41.667 0.00 0.00 0.00 3.16
3276 3547 5.035443 CGTAGCACCTATAACAGTCAAGTC 58.965 45.833 0.00 0.00 0.00 3.01
3277 3548 4.473477 AGCACCTATAACAGTCAAGTCC 57.527 45.455 0.00 0.00 0.00 3.85
3278 3549 4.097418 AGCACCTATAACAGTCAAGTCCT 58.903 43.478 0.00 0.00 0.00 3.85
3279 3550 5.269991 AGCACCTATAACAGTCAAGTCCTA 58.730 41.667 0.00 0.00 0.00 2.94
3280 3551 5.361285 AGCACCTATAACAGTCAAGTCCTAG 59.639 44.000 0.00 0.00 0.00 3.02
3281 3552 5.360144 GCACCTATAACAGTCAAGTCCTAGA 59.640 44.000 0.00 0.00 0.00 2.43
3282 3553 6.680872 GCACCTATAACAGTCAAGTCCTAGAC 60.681 46.154 0.00 0.00 35.02 2.59
3283 3554 6.603997 CACCTATAACAGTCAAGTCCTAGACT 59.396 42.308 0.00 0.00 45.64 3.24
3291 3562 3.516578 AGTCCTAGACTTTGCGTGC 57.483 52.632 0.00 0.00 40.28 5.34
3292 3563 0.679505 AGTCCTAGACTTTGCGTGCA 59.320 50.000 0.00 0.00 40.28 4.57
3293 3564 0.790814 GTCCTAGACTTTGCGTGCAC 59.209 55.000 6.82 6.82 0.00 4.57
3294 3565 0.391228 TCCTAGACTTTGCGTGCACA 59.609 50.000 18.64 0.00 0.00 4.57
3295 3566 1.001974 TCCTAGACTTTGCGTGCACAT 59.998 47.619 18.64 0.00 0.00 3.21
3296 3567 1.394917 CCTAGACTTTGCGTGCACATC 59.605 52.381 18.64 8.42 0.00 3.06
3297 3568 1.394917 CTAGACTTTGCGTGCACATCC 59.605 52.381 18.64 4.90 0.00 3.51
3298 3569 0.250467 AGACTTTGCGTGCACATCCT 60.250 50.000 18.64 0.53 0.00 3.24
3299 3570 0.593128 GACTTTGCGTGCACATCCTT 59.407 50.000 18.64 0.00 0.00 3.36
3300 3571 0.311790 ACTTTGCGTGCACATCCTTG 59.688 50.000 18.64 4.51 0.00 3.61
3301 3572 0.311790 CTTTGCGTGCACATCCTTGT 59.688 50.000 18.64 0.00 36.15 3.16
3302 3573 0.310543 TTTGCGTGCACATCCTTGTC 59.689 50.000 18.64 0.00 32.34 3.18
3303 3574 1.514678 TTGCGTGCACATCCTTGTCC 61.515 55.000 18.64 0.00 32.34 4.02
3304 3575 1.672356 GCGTGCACATCCTTGTCCT 60.672 57.895 18.64 0.00 32.34 3.85
3305 3576 1.237285 GCGTGCACATCCTTGTCCTT 61.237 55.000 18.64 0.00 32.34 3.36
3306 3577 1.238439 CGTGCACATCCTTGTCCTTT 58.762 50.000 18.64 0.00 32.34 3.11
3307 3578 1.197721 CGTGCACATCCTTGTCCTTTC 59.802 52.381 18.64 0.00 32.34 2.62
3308 3579 1.197721 GTGCACATCCTTGTCCTTTCG 59.802 52.381 13.17 0.00 32.34 3.46
3309 3580 1.071542 TGCACATCCTTGTCCTTTCGA 59.928 47.619 0.00 0.00 32.34 3.71
3310 3581 1.734465 GCACATCCTTGTCCTTTCGAG 59.266 52.381 0.00 0.00 32.34 4.04
3311 3582 2.872038 GCACATCCTTGTCCTTTCGAGT 60.872 50.000 0.00 0.00 32.34 4.18
3312 3583 2.738846 CACATCCTTGTCCTTTCGAGTG 59.261 50.000 0.00 0.00 32.34 3.51
3313 3584 2.368875 ACATCCTTGTCCTTTCGAGTGT 59.631 45.455 0.00 0.00 0.00 3.55
3314 3585 2.814280 TCCTTGTCCTTTCGAGTGTC 57.186 50.000 0.00 0.00 0.00 3.67
3315 3586 2.317040 TCCTTGTCCTTTCGAGTGTCT 58.683 47.619 0.00 0.00 0.00 3.41
3316 3587 3.493334 TCCTTGTCCTTTCGAGTGTCTA 58.507 45.455 0.00 0.00 0.00 2.59
3317 3588 3.255149 TCCTTGTCCTTTCGAGTGTCTAC 59.745 47.826 0.00 0.00 0.00 2.59
3318 3589 3.256136 CCTTGTCCTTTCGAGTGTCTACT 59.744 47.826 0.00 0.00 40.66 2.57
3331 3602 5.574891 AGTGTCTACTCAAGCATGACTAG 57.425 43.478 0.00 0.00 28.79 2.57
3332 3603 5.013547 AGTGTCTACTCAAGCATGACTAGT 58.986 41.667 0.00 0.00 28.79 2.57
3333 3604 5.098893 GTGTCTACTCAAGCATGACTAGTG 58.901 45.833 0.00 0.00 0.00 2.74
3334 3605 4.109050 GTCTACTCAAGCATGACTAGTGC 58.891 47.826 0.00 0.00 42.81 4.40
3335 3606 2.001812 ACTCAAGCATGACTAGTGCG 57.998 50.000 0.00 0.00 46.86 5.34
3336 3607 1.284657 CTCAAGCATGACTAGTGCGG 58.715 55.000 0.00 0.00 46.86 5.69
3337 3608 0.108186 TCAAGCATGACTAGTGCGGG 60.108 55.000 0.00 0.00 46.86 6.13
3338 3609 1.091771 CAAGCATGACTAGTGCGGGG 61.092 60.000 0.00 0.00 46.86 5.73
3339 3610 2.203070 GCATGACTAGTGCGGGGG 60.203 66.667 0.00 0.00 32.29 5.40
3340 3611 2.203070 CATGACTAGTGCGGGGGC 60.203 66.667 0.00 0.00 0.00 5.80
3341 3612 3.849951 ATGACTAGTGCGGGGGCG 61.850 66.667 0.00 0.00 0.00 6.13
3345 3616 3.923864 CTAGTGCGGGGGCGCATA 61.924 66.667 10.83 0.00 46.86 3.14
3346 3617 3.865929 CTAGTGCGGGGGCGCATAG 62.866 68.421 10.83 0.00 46.86 2.23
3348 3619 4.626081 GTGCGGGGGCGCATAGAT 62.626 66.667 10.83 0.00 46.86 1.98
3349 3620 2.920384 TGCGGGGGCGCATAGATA 60.920 61.111 10.83 0.00 40.19 1.98
3350 3621 2.290287 TGCGGGGGCGCATAGATAT 61.290 57.895 10.83 0.00 40.19 1.63
3351 3622 1.078426 GCGGGGGCGCATAGATATT 60.078 57.895 10.83 0.00 34.62 1.28
3352 3623 0.676782 GCGGGGGCGCATAGATATTT 60.677 55.000 10.83 0.00 34.62 1.40
3353 3624 1.086696 CGGGGGCGCATAGATATTTG 58.913 55.000 10.83 0.00 0.00 2.32
3354 3625 1.610624 CGGGGGCGCATAGATATTTGT 60.611 52.381 10.83 0.00 0.00 2.83
3355 3626 2.514803 GGGGGCGCATAGATATTTGTT 58.485 47.619 10.83 0.00 0.00 2.83
3356 3627 2.228822 GGGGGCGCATAGATATTTGTTG 59.771 50.000 10.83 0.00 0.00 3.33
3357 3628 2.228822 GGGGCGCATAGATATTTGTTGG 59.771 50.000 10.83 0.00 0.00 3.77
3358 3629 2.884639 GGGCGCATAGATATTTGTTGGT 59.115 45.455 10.83 0.00 0.00 3.67
3359 3630 3.304659 GGGCGCATAGATATTTGTTGGTG 60.305 47.826 10.83 0.00 0.00 4.17
3360 3631 3.304659 GGCGCATAGATATTTGTTGGTGG 60.305 47.826 10.83 0.00 0.00 4.61
3361 3632 3.563808 GCGCATAGATATTTGTTGGTGGA 59.436 43.478 0.30 0.00 0.00 4.02
3362 3633 4.554723 GCGCATAGATATTTGTTGGTGGAC 60.555 45.833 0.30 0.00 0.00 4.02
3363 3634 4.816385 CGCATAGATATTTGTTGGTGGACT 59.184 41.667 0.00 0.00 0.00 3.85
3364 3635 5.296780 CGCATAGATATTTGTTGGTGGACTT 59.703 40.000 0.00 0.00 0.00 3.01
3365 3636 6.498304 GCATAGATATTTGTTGGTGGACTTG 58.502 40.000 0.00 0.00 0.00 3.16
3366 3637 6.318648 GCATAGATATTTGTTGGTGGACTTGA 59.681 38.462 0.00 0.00 0.00 3.02
3367 3638 7.013655 GCATAGATATTTGTTGGTGGACTTGAT 59.986 37.037 0.00 0.00 0.00 2.57
3368 3639 8.562892 CATAGATATTTGTTGGTGGACTTGATC 58.437 37.037 0.00 0.00 0.00 2.92
3378 3649 1.723870 GACTTGATCCATGCACGCC 59.276 57.895 0.00 0.00 0.00 5.68
3379 3650 1.718757 GACTTGATCCATGCACGCCC 61.719 60.000 0.00 0.00 0.00 6.13
3380 3651 1.750018 CTTGATCCATGCACGCCCA 60.750 57.895 0.00 0.00 0.00 5.36
3381 3652 1.076850 TTGATCCATGCACGCCCAT 60.077 52.632 0.00 0.00 0.00 4.00
3382 3653 0.182299 TTGATCCATGCACGCCCATA 59.818 50.000 0.00 0.00 0.00 2.74
3383 3654 0.250424 TGATCCATGCACGCCCATAG 60.250 55.000 0.00 0.00 0.00 2.23
3384 3655 0.957395 GATCCATGCACGCCCATAGG 60.957 60.000 0.00 0.00 0.00 2.57
3406 3677 4.621769 GGATACCCTGCCTATATACACCT 58.378 47.826 0.00 0.00 0.00 4.00
3407 3678 4.406003 GGATACCCTGCCTATATACACCTG 59.594 50.000 0.00 0.00 0.00 4.00
3408 3679 3.346146 ACCCTGCCTATATACACCTGT 57.654 47.619 0.00 0.00 0.00 4.00
3409 3680 4.480777 ACCCTGCCTATATACACCTGTA 57.519 45.455 0.00 0.00 34.67 2.74
3410 3681 4.158015 ACCCTGCCTATATACACCTGTAC 58.842 47.826 0.00 0.00 32.72 2.90
3411 3682 4.157246 CCCTGCCTATATACACCTGTACA 58.843 47.826 0.00 0.00 32.72 2.90
3412 3683 4.021368 CCCTGCCTATATACACCTGTACAC 60.021 50.000 0.00 0.00 32.72 2.90
3413 3684 4.321008 CCTGCCTATATACACCTGTACACG 60.321 50.000 0.00 0.00 32.72 4.49
3414 3685 3.570975 TGCCTATATACACCTGTACACGG 59.429 47.826 9.12 9.12 32.72 4.94
3415 3686 3.571401 GCCTATATACACCTGTACACGGT 59.429 47.826 10.21 10.21 32.72 4.83
3422 3693 1.589803 ACCTGTACACGGTGAAAAGC 58.410 50.000 16.29 0.72 32.41 3.51
3423 3694 0.872388 CCTGTACACGGTGAAAAGCC 59.128 55.000 16.29 0.00 0.00 4.35
3424 3695 0.872388 CTGTACACGGTGAAAAGCCC 59.128 55.000 16.29 0.00 0.00 5.19
3425 3696 0.180642 TGTACACGGTGAAAAGCCCA 59.819 50.000 16.29 0.00 0.00 5.36
3426 3697 1.202830 TGTACACGGTGAAAAGCCCAT 60.203 47.619 16.29 0.00 0.00 4.00
3427 3698 1.199097 GTACACGGTGAAAAGCCCATG 59.801 52.381 16.29 0.00 0.00 3.66
3428 3699 1.178534 ACACGGTGAAAAGCCCATGG 61.179 55.000 16.29 4.14 0.00 3.66
3429 3700 1.152830 ACGGTGAAAAGCCCATGGT 59.847 52.632 11.73 0.00 0.00 3.55
3430 3701 0.402504 ACGGTGAAAAGCCCATGGTA 59.597 50.000 11.73 0.00 0.00 3.25
3431 3702 1.202952 ACGGTGAAAAGCCCATGGTAA 60.203 47.619 11.73 0.00 0.00 2.85
3432 3703 2.099405 CGGTGAAAAGCCCATGGTAAT 58.901 47.619 11.73 0.00 0.00 1.89
3433 3704 3.283751 CGGTGAAAAGCCCATGGTAATA 58.716 45.455 11.73 0.00 0.00 0.98
3434 3705 3.888930 CGGTGAAAAGCCCATGGTAATAT 59.111 43.478 11.73 0.00 0.00 1.28
3435 3706 4.023193 CGGTGAAAAGCCCATGGTAATATC 60.023 45.833 11.73 4.16 0.00 1.63
3436 3707 5.140454 GGTGAAAAGCCCATGGTAATATCT 58.860 41.667 11.73 0.00 0.00 1.98
3437 3708 5.010012 GGTGAAAAGCCCATGGTAATATCTG 59.990 44.000 11.73 0.00 0.00 2.90
3438 3709 5.827797 GTGAAAAGCCCATGGTAATATCTGA 59.172 40.000 11.73 0.00 0.00 3.27
3439 3710 6.321181 GTGAAAAGCCCATGGTAATATCTGAA 59.679 38.462 11.73 0.00 0.00 3.02
3440 3711 6.894654 TGAAAAGCCCATGGTAATATCTGAAA 59.105 34.615 11.73 0.00 0.00 2.69
3441 3712 7.564660 TGAAAAGCCCATGGTAATATCTGAAAT 59.435 33.333 11.73 0.00 0.00 2.17
3442 3713 6.906157 AAGCCCATGGTAATATCTGAAATG 57.094 37.500 11.73 0.00 0.00 2.32
3443 3714 6.204852 AGCCCATGGTAATATCTGAAATGA 57.795 37.500 11.73 0.00 0.00 2.57
3444 3715 6.613699 AGCCCATGGTAATATCTGAAATGAA 58.386 36.000 11.73 0.00 0.00 2.57
3445 3716 6.718454 AGCCCATGGTAATATCTGAAATGAAG 59.282 38.462 11.73 0.00 0.00 3.02
3446 3717 6.491403 GCCCATGGTAATATCTGAAATGAAGT 59.509 38.462 11.73 0.00 0.00 3.01
3447 3718 7.014615 GCCCATGGTAATATCTGAAATGAAGTT 59.985 37.037 11.73 0.00 0.00 2.66
3448 3719 8.355169 CCCATGGTAATATCTGAAATGAAGTTG 58.645 37.037 11.73 0.00 0.00 3.16
3449 3720 7.864379 CCATGGTAATATCTGAAATGAAGTTGC 59.136 37.037 2.57 0.00 0.00 4.17
3450 3721 7.936496 TGGTAATATCTGAAATGAAGTTGCA 57.064 32.000 0.00 0.00 0.00 4.08
3451 3722 8.347004 TGGTAATATCTGAAATGAAGTTGCAA 57.653 30.769 0.00 0.00 0.00 4.08
3452 3723 8.970020 TGGTAATATCTGAAATGAAGTTGCAAT 58.030 29.630 0.59 0.00 0.00 3.56
3453 3724 9.807649 GGTAATATCTGAAATGAAGTTGCAATT 57.192 29.630 0.59 0.00 0.00 2.32
3459 3730 8.801715 TCTGAAATGAAGTTGCAATTTTACTC 57.198 30.769 8.72 6.14 0.00 2.59
3460 3731 8.412456 TCTGAAATGAAGTTGCAATTTTACTCA 58.588 29.630 8.72 9.84 0.00 3.41
3461 3732 8.939201 TGAAATGAAGTTGCAATTTTACTCAA 57.061 26.923 8.72 0.00 0.00 3.02
3462 3733 9.376075 TGAAATGAAGTTGCAATTTTACTCAAA 57.624 25.926 8.72 0.00 0.00 2.69
3465 3736 9.598517 AATGAAGTTGCAATTTTACTCAAAAGA 57.401 25.926 8.72 0.00 37.08 2.52
3466 3737 8.633075 TGAAGTTGCAATTTTACTCAAAAGAG 57.367 30.769 8.72 0.00 37.08 2.85
3467 3738 8.465999 TGAAGTTGCAATTTTACTCAAAAGAGA 58.534 29.630 8.72 0.00 37.08 3.10
3468 3739 9.468532 GAAGTTGCAATTTTACTCAAAAGAGAT 57.531 29.630 8.72 0.00 37.08 2.75
3469 3740 8.807667 AGTTGCAATTTTACTCAAAAGAGATG 57.192 30.769 0.59 0.00 37.08 2.90
3470 3741 7.869429 AGTTGCAATTTTACTCAAAAGAGATGG 59.131 33.333 0.59 0.00 37.08 3.51
3471 3742 7.523293 TGCAATTTTACTCAAAAGAGATGGA 57.477 32.000 0.00 0.00 37.08 3.41
3472 3743 7.596494 TGCAATTTTACTCAAAAGAGATGGAG 58.404 34.615 0.00 0.00 37.08 3.86
3473 3744 7.231317 TGCAATTTTACTCAAAAGAGATGGAGT 59.769 33.333 0.00 0.00 42.76 3.85
3474 3745 8.084684 GCAATTTTACTCAAAAGAGATGGAGTT 58.915 33.333 0.00 0.00 40.76 3.01
3475 3746 9.403110 CAATTTTACTCAAAAGAGATGGAGTTG 57.597 33.333 0.00 0.00 40.76 3.16
3476 3747 7.510549 TTTTACTCAAAAGAGATGGAGTTGG 57.489 36.000 0.00 0.00 40.76 3.77
3477 3748 4.026356 ACTCAAAAGAGATGGAGTTGGG 57.974 45.455 0.00 0.00 37.31 4.12
3478 3749 3.245052 ACTCAAAAGAGATGGAGTTGGGG 60.245 47.826 0.00 0.00 37.31 4.96
3479 3750 2.041620 TCAAAAGAGATGGAGTTGGGGG 59.958 50.000 0.00 0.00 0.00 5.40
3480 3751 2.041620 CAAAAGAGATGGAGTTGGGGGA 59.958 50.000 0.00 0.00 0.00 4.81
3481 3752 1.589414 AAGAGATGGAGTTGGGGGAG 58.411 55.000 0.00 0.00 0.00 4.30
3482 3753 0.419459 AGAGATGGAGTTGGGGGAGT 59.581 55.000 0.00 0.00 0.00 3.85
3483 3754 1.651770 AGAGATGGAGTTGGGGGAGTA 59.348 52.381 0.00 0.00 0.00 2.59
3484 3755 2.043227 GAGATGGAGTTGGGGGAGTAG 58.957 57.143 0.00 0.00 0.00 2.57
3485 3756 0.470341 GATGGAGTTGGGGGAGTAGC 59.530 60.000 0.00 0.00 0.00 3.58
3486 3757 0.253160 ATGGAGTTGGGGGAGTAGCA 60.253 55.000 0.00 0.00 0.00 3.49
3487 3758 0.253160 TGGAGTTGGGGGAGTAGCAT 60.253 55.000 0.00 0.00 0.00 3.79
3488 3759 0.470341 GGAGTTGGGGGAGTAGCATC 59.530 60.000 0.00 0.00 0.00 3.91
3489 3760 0.470341 GAGTTGGGGGAGTAGCATCC 59.530 60.000 0.00 0.00 38.76 3.51
3490 3761 0.253160 AGTTGGGGGAGTAGCATCCA 60.253 55.000 5.17 0.00 41.52 3.41
3491 3762 0.623723 GTTGGGGGAGTAGCATCCAA 59.376 55.000 5.17 0.00 41.52 3.53
3492 3763 0.623723 TTGGGGGAGTAGCATCCAAC 59.376 55.000 5.17 0.00 41.52 3.77
3493 3764 0.548926 TGGGGGAGTAGCATCCAACA 60.549 55.000 5.17 1.02 41.52 3.33
3494 3765 0.846693 GGGGGAGTAGCATCCAACAT 59.153 55.000 5.17 0.00 41.52 2.71
3495 3766 1.215423 GGGGGAGTAGCATCCAACATT 59.785 52.381 5.17 0.00 41.52 2.71
3496 3767 2.301346 GGGGAGTAGCATCCAACATTG 58.699 52.381 5.17 0.00 41.52 2.82
3497 3768 2.357154 GGGGAGTAGCATCCAACATTGT 60.357 50.000 5.17 0.00 41.52 2.71
3498 3769 2.945668 GGGAGTAGCATCCAACATTGTC 59.054 50.000 5.17 0.00 41.52 3.18
3499 3770 2.945668 GGAGTAGCATCCAACATTGTCC 59.054 50.000 0.00 0.00 39.34 4.02
3500 3771 3.370953 GGAGTAGCATCCAACATTGTCCT 60.371 47.826 0.00 0.00 39.34 3.85
3501 3772 3.873952 GAGTAGCATCCAACATTGTCCTC 59.126 47.826 0.00 0.00 0.00 3.71
3502 3773 3.521126 AGTAGCATCCAACATTGTCCTCT 59.479 43.478 0.00 0.00 0.00 3.69
3503 3774 2.719739 AGCATCCAACATTGTCCTCTG 58.280 47.619 0.00 0.00 0.00 3.35
3504 3775 1.133790 GCATCCAACATTGTCCTCTGC 59.866 52.381 0.00 0.00 0.00 4.26
3505 3776 1.399440 CATCCAACATTGTCCTCTGCG 59.601 52.381 0.00 0.00 0.00 5.18
3506 3777 0.684535 TCCAACATTGTCCTCTGCGA 59.315 50.000 0.00 0.00 0.00 5.10
3507 3778 1.081892 CCAACATTGTCCTCTGCGAG 58.918 55.000 0.00 0.00 0.00 5.03
3508 3779 1.609061 CCAACATTGTCCTCTGCGAGT 60.609 52.381 0.00 0.00 0.00 4.18
3509 3780 1.728971 CAACATTGTCCTCTGCGAGTC 59.271 52.381 0.00 0.00 0.00 3.36
3510 3781 1.261480 ACATTGTCCTCTGCGAGTCT 58.739 50.000 0.00 0.00 0.00 3.24
3511 3782 1.620819 ACATTGTCCTCTGCGAGTCTT 59.379 47.619 0.00 0.00 0.00 3.01
3512 3783 2.037772 ACATTGTCCTCTGCGAGTCTTT 59.962 45.455 0.00 0.00 0.00 2.52
3513 3784 2.440539 TTGTCCTCTGCGAGTCTTTC 57.559 50.000 0.00 0.00 0.00 2.62
3514 3785 0.603569 TGTCCTCTGCGAGTCTTTCC 59.396 55.000 0.00 0.00 0.00 3.13
3515 3786 0.108567 GTCCTCTGCGAGTCTTTCCC 60.109 60.000 0.00 0.00 0.00 3.97
3516 3787 1.153745 CCTCTGCGAGTCTTTCCCG 60.154 63.158 0.00 0.00 0.00 5.14
3517 3788 1.587054 CTCTGCGAGTCTTTCCCGT 59.413 57.895 0.00 0.00 0.00 5.28
3518 3789 0.456995 CTCTGCGAGTCTTTCCCGTC 60.457 60.000 0.00 0.00 0.00 4.79
3519 3790 0.894184 TCTGCGAGTCTTTCCCGTCT 60.894 55.000 0.00 0.00 0.00 4.18
3520 3791 0.809385 CTGCGAGTCTTTCCCGTCTA 59.191 55.000 0.00 0.00 0.00 2.59
3521 3792 1.405821 CTGCGAGTCTTTCCCGTCTAT 59.594 52.381 0.00 0.00 0.00 1.98
3522 3793 1.404391 TGCGAGTCTTTCCCGTCTATC 59.596 52.381 0.00 0.00 0.00 2.08
3523 3794 1.677052 GCGAGTCTTTCCCGTCTATCT 59.323 52.381 0.00 0.00 0.00 1.98
3524 3795 2.099427 GCGAGTCTTTCCCGTCTATCTT 59.901 50.000 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.338337 TCGGCGCAATTTTGGAAGAAA 59.662 42.857 10.83 0.00 0.00 2.52
29 30 1.270571 ACCCAAATTCGGCGCAATTTT 60.271 42.857 19.84 2.92 34.37 1.82
33 34 1.175983 AGAACCCAAATTCGGCGCAA 61.176 50.000 10.83 0.00 33.57 4.85
35 36 1.136774 GAGAACCCAAATTCGGCGC 59.863 57.895 0.00 0.00 33.57 6.53
40 41 8.800370 AATAGAGAAGAAGAGAACCCAAATTC 57.200 34.615 0.00 0.00 0.00 2.17
159 160 6.072673 ACAACCGATCCTCAATAACTTCAAAC 60.073 38.462 0.00 0.00 0.00 2.93
162 163 4.935205 CACAACCGATCCTCAATAACTTCA 59.065 41.667 0.00 0.00 0.00 3.02
164 165 5.160607 TCACAACCGATCCTCAATAACTT 57.839 39.130 0.00 0.00 0.00 2.66
165 166 4.819105 TCACAACCGATCCTCAATAACT 57.181 40.909 0.00 0.00 0.00 2.24
166 167 5.873179 TTTCACAACCGATCCTCAATAAC 57.127 39.130 0.00 0.00 0.00 1.89
167 168 6.885952 TTTTTCACAACCGATCCTCAATAA 57.114 33.333 0.00 0.00 0.00 1.40
168 169 8.620416 CATATTTTTCACAACCGATCCTCAATA 58.380 33.333 0.00 0.00 0.00 1.90
175 176 7.524294 AAATGCATATTTTTCACAACCGATC 57.476 32.000 0.00 0.00 32.70 3.69
243 244 7.771183 TGAGGGCAATTATTAAGACAATTGTC 58.229 34.615 27.69 27.69 43.01 3.18
312 313 4.640647 GTGGTAGGTTTCAGGAATGGATTC 59.359 45.833 0.00 0.00 36.08 2.52
365 366 4.100035 ACAGATGTGCATCCGATAGAAAGA 59.900 41.667 8.41 0.00 38.58 2.52
374 375 1.028330 AGCCAACAGATGTGCATCCG 61.028 55.000 8.41 1.57 38.58 4.18
398 399 4.458989 TCCAACACTTCTACAAATGGATGC 59.541 41.667 0.00 0.00 30.90 3.91
411 412 8.438676 AGCTACAATGTATATTCCAACACTTC 57.561 34.615 0.00 0.00 0.00 3.01
475 476 3.888930 CGAACTGGCCCATTGGTTATATT 59.111 43.478 0.00 0.00 0.00 1.28
477 478 2.422235 CCGAACTGGCCCATTGGTTATA 60.422 50.000 0.00 0.00 0.00 0.98
505 506 9.467796 TCATATATATCCACTGGTTGACTCTAG 57.532 37.037 0.00 0.00 0.00 2.43
506 507 9.822727 TTCATATATATCCACTGGTTGACTCTA 57.177 33.333 0.00 0.00 0.00 2.43
507 508 8.727100 TTCATATATATCCACTGGTTGACTCT 57.273 34.615 0.00 0.00 0.00 3.24
508 509 8.807118 TCTTCATATATATCCACTGGTTGACTC 58.193 37.037 0.00 0.00 0.00 3.36
509 510 8.727100 TCTTCATATATATCCACTGGTTGACT 57.273 34.615 0.00 0.00 0.00 3.41
510 511 9.950496 ATTCTTCATATATATCCACTGGTTGAC 57.050 33.333 0.00 0.00 0.00 3.18
600 601 5.761205 AGGGCACATACATTAATTGTACCA 58.239 37.500 9.31 0.00 43.46 3.25
602 603 5.526111 ACGAGGGCACATACATTAATTGTAC 59.474 40.000 0.00 0.00 43.46 2.90
604 605 4.523083 ACGAGGGCACATACATTAATTGT 58.477 39.130 0.00 0.00 42.62 2.71
613 614 1.935933 AATCGAACGAGGGCACATAC 58.064 50.000 2.94 0.00 0.00 2.39
623 624 5.116069 TCCGATGATATCAAATCGAACGA 57.884 39.130 23.79 13.34 46.70 3.85
695 786 9.574516 CCAGCCCTTAATCTTAATAATACAGTT 57.425 33.333 0.00 0.00 0.00 3.16
700 791 6.877322 GTCGCCAGCCCTTAATCTTAATAATA 59.123 38.462 0.00 0.00 0.00 0.98
717 808 2.240612 AATTTCTTCGCGTCGCCAGC 62.241 55.000 12.44 0.00 0.00 4.85
719 810 1.647346 ATAATTTCTTCGCGTCGCCA 58.353 45.000 12.44 0.00 0.00 5.69
720 811 2.625828 GAATAATTTCTTCGCGTCGCC 58.374 47.619 12.44 0.00 0.00 5.54
721 812 2.278563 CGAATAATTTCTTCGCGTCGC 58.721 47.619 7.29 7.29 39.03 5.19
817 908 6.473455 ACATTTCTTGCGTTTCTCTTCTTTTG 59.527 34.615 0.00 0.00 0.00 2.44
820 911 5.757850 ACATTTCTTGCGTTTCTCTTCTT 57.242 34.783 0.00 0.00 0.00 2.52
821 912 6.876257 AGATACATTTCTTGCGTTTCTCTTCT 59.124 34.615 0.00 0.00 0.00 2.85
822 913 7.066374 AGATACATTTCTTGCGTTTCTCTTC 57.934 36.000 0.00 0.00 0.00 2.87
831 922 5.998454 ATCCTGAAGATACATTTCTTGCG 57.002 39.130 0.00 0.00 36.10 4.85
850 941 2.288273 GGCAGTGAGTACACCGATATCC 60.288 54.545 0.00 0.00 46.99 2.59
854 945 1.137086 GATGGCAGTGAGTACACCGAT 59.863 52.381 0.00 0.00 46.99 4.18
857 948 0.246635 ACGATGGCAGTGAGTACACC 59.753 55.000 0.00 0.00 46.99 4.16
858 949 2.933495 TACGATGGCAGTGAGTACAC 57.067 50.000 0.00 0.00 46.24 2.90
859 950 4.465632 AAATACGATGGCAGTGAGTACA 57.534 40.909 0.00 0.00 0.00 2.90
879 970 3.640029 CCGAATTCTACTAGCAGGGGTAA 59.360 47.826 3.52 0.00 0.00 2.85
884 975 1.689273 AGGCCGAATTCTACTAGCAGG 59.311 52.381 3.52 0.00 0.00 4.85
926 1017 5.789521 TGTGATCCGAAGTAGTTCATTTGA 58.210 37.500 10.83 1.99 32.36 2.69
937 1028 2.104111 TGACTGGTTTGTGATCCGAAGT 59.896 45.455 0.00 0.00 0.00 3.01
989 1080 1.520342 GAGGCCATCGAGACACTGC 60.520 63.158 5.01 0.00 0.00 4.40
1016 1107 1.003233 AGGAAATGGAACGGTGTCCTC 59.997 52.381 9.64 1.89 38.62 3.71
1291 1386 3.515502 TGTGAGCACAAAGAGGTAGCTAT 59.484 43.478 0.00 0.00 38.56 2.97
1304 1399 2.871637 GCCAGACACTATTGTGAGCACA 60.872 50.000 14.37 0.00 46.55 4.57
1305 1400 1.734465 GCCAGACACTATTGTGAGCAC 59.266 52.381 14.37 3.08 46.55 4.40
1306 1401 1.625315 AGCCAGACACTATTGTGAGCA 59.375 47.619 14.37 0.00 46.55 4.26
1307 1402 2.005451 CAGCCAGACACTATTGTGAGC 58.995 52.381 14.37 10.37 46.55 4.26
1308 1403 2.998670 CACAGCCAGACACTATTGTGAG 59.001 50.000 14.37 3.69 46.55 3.51
1309 1404 2.871637 GCACAGCCAGACACTATTGTGA 60.872 50.000 14.37 0.00 46.55 3.58
1311 1406 1.349026 AGCACAGCCAGACACTATTGT 59.651 47.619 0.00 0.00 39.32 2.71
1312 1407 1.736126 CAGCACAGCCAGACACTATTG 59.264 52.381 0.00 0.00 0.00 1.90
1313 1408 1.625315 TCAGCACAGCCAGACACTATT 59.375 47.619 0.00 0.00 0.00 1.73
1314 1409 1.066573 GTCAGCACAGCCAGACACTAT 60.067 52.381 7.14 0.00 35.28 2.12
1322 1417 1.096967 CACAGTTGTCAGCACAGCCA 61.097 55.000 0.00 0.00 34.33 4.75
1409 1504 1.305219 ACCGAATGTGCATTGTCCCG 61.305 55.000 1.77 0.20 0.00 5.14
1440 1535 3.595758 GCCGTGGCAGCAAACACT 61.596 61.111 5.89 0.00 41.49 3.55
1476 1572 3.374764 GAATACCAAGGCCCCATCTTTT 58.625 45.455 0.00 0.00 0.00 2.27
1482 1578 2.685534 CGGGAATACCAAGGCCCCA 61.686 63.158 0.00 0.00 40.22 4.96
1491 1587 1.917336 TTGGCAGACCCGGGAATACC 61.917 60.000 32.02 22.79 35.87 2.73
1512 1608 3.224324 GCCCATCTGCATGCCCAG 61.224 66.667 16.68 7.00 0.00 4.45
1544 1640 2.158813 CCCTGGTGCTATCCGTTGTAAT 60.159 50.000 0.00 0.00 0.00 1.89
1545 1641 1.208535 CCCTGGTGCTATCCGTTGTAA 59.791 52.381 0.00 0.00 0.00 2.41
1547 1643 1.602237 CCCTGGTGCTATCCGTTGT 59.398 57.895 0.00 0.00 0.00 3.32
1588 1684 9.392259 AGTAACTAAAACTGATATGCTAAACCC 57.608 33.333 0.00 0.00 0.00 4.11
1619 1733 9.217278 GCAGTACTTATCATGTACTAGTAGCTA 57.783 37.037 1.87 0.00 45.93 3.32
1620 1734 7.940137 AGCAGTACTTATCATGTACTAGTAGCT 59.060 37.037 1.87 8.03 45.93 3.32
1621 1735 8.101654 AGCAGTACTTATCATGTACTAGTAGC 57.898 38.462 1.87 6.23 45.93 3.58
1633 1747 8.846211 GCCCAATTAATAAAGCAGTACTTATCA 58.154 33.333 0.00 0.00 37.75 2.15
1634 1748 9.067986 AGCCCAATTAATAAAGCAGTACTTATC 57.932 33.333 0.00 0.00 37.75 1.75
1635 1749 8.996651 AGCCCAATTAATAAAGCAGTACTTAT 57.003 30.769 0.00 0.00 37.75 1.73
1636 1750 9.333724 GTAGCCCAATTAATAAAGCAGTACTTA 57.666 33.333 0.00 0.00 37.75 2.24
1637 1751 7.012044 CGTAGCCCAATTAATAAAGCAGTACTT 59.988 37.037 0.00 0.00 41.70 2.24
1638 1752 6.482308 CGTAGCCCAATTAATAAAGCAGTACT 59.518 38.462 0.00 0.00 0.00 2.73
1639 1753 6.259387 ACGTAGCCCAATTAATAAAGCAGTAC 59.741 38.462 0.00 0.00 0.00 2.73
1640 1754 6.350906 ACGTAGCCCAATTAATAAAGCAGTA 58.649 36.000 0.00 0.00 0.00 2.74
1641 1755 5.190677 ACGTAGCCCAATTAATAAAGCAGT 58.809 37.500 0.00 1.93 0.00 4.40
1642 1756 5.751243 ACGTAGCCCAATTAATAAAGCAG 57.249 39.130 0.00 1.46 0.00 4.24
1643 1757 5.234757 CGTACGTAGCCCAATTAATAAAGCA 59.765 40.000 7.22 0.00 0.00 3.91
1644 1758 5.463061 TCGTACGTAGCCCAATTAATAAAGC 59.537 40.000 16.05 0.00 0.00 3.51
1645 1759 7.383029 TCATCGTACGTAGCCCAATTAATAAAG 59.617 37.037 16.05 0.00 0.00 1.85
1673 1787 3.695606 TCTCCTCGCACCTGGCAC 61.696 66.667 0.00 0.00 45.17 5.01
1771 1885 0.756903 ACTGGTAGGCTGTTTCACGT 59.243 50.000 0.00 0.00 0.00 4.49
1801 1915 1.854743 CTGATGATGCGGTTGACTACG 59.145 52.381 0.00 0.00 0.00 3.51
1804 1918 3.827008 ATACTGATGATGCGGTTGACT 57.173 42.857 0.00 0.00 0.00 3.41
1828 1942 0.391130 GATGGCGTGTAAGCACCTGA 60.391 55.000 0.00 0.00 42.39 3.86
1876 1990 9.237846 CTACGAATACGATGCATTGATGTATAT 57.762 33.333 21.12 4.70 42.66 0.86
1885 1999 3.181469 ACCACCTACGAATACGATGCATT 60.181 43.478 0.00 0.00 42.66 3.56
1889 2003 4.426416 TGAAACCACCTACGAATACGATG 58.574 43.478 0.00 0.00 42.66 3.84
2025 2145 0.523072 GGTCGTAGTCTGCACGGTTA 59.477 55.000 0.00 0.00 39.82 2.85
2061 2181 2.806608 TGGAGAAGTCGTTGTACCAC 57.193 50.000 0.00 0.00 0.00 4.16
2102 2222 0.951040 GAGCCTGTTGACCTCGTTGG 60.951 60.000 0.00 0.00 42.93 3.77
2181 2301 2.303022 TCTGTGTGGGTTCCTGAAGATC 59.697 50.000 0.00 0.00 0.00 2.75
2189 2309 1.886542 GACCAAATCTGTGTGGGTTCC 59.113 52.381 0.00 0.00 39.39 3.62
2233 2353 3.892588 AGTCCGCTTAGATTAGGAGAAGG 59.107 47.826 0.00 0.00 32.82 3.46
2245 2365 5.234329 CCAAATACACATGTAGTCCGCTTAG 59.766 44.000 0.00 0.00 33.52 2.18
2246 2366 5.113383 CCAAATACACATGTAGTCCGCTTA 58.887 41.667 0.00 0.00 33.52 3.09
2260 2380 1.469079 GGCGCATGGAACCAAATACAC 60.469 52.381 10.83 0.00 0.00 2.90
2263 2383 1.999071 GCGGCGCATGGAACCAAATA 61.999 55.000 29.21 0.00 0.00 1.40
2264 2384 2.884367 CGGCGCATGGAACCAAAT 59.116 55.556 10.83 0.00 0.00 2.32
2312 2432 2.037772 GAGGATCACCGATACCTGCATT 59.962 50.000 0.00 0.00 41.83 3.56
2476 2596 2.360600 TACGGCCCATGCAACACC 60.361 61.111 0.00 0.00 40.13 4.16
2551 2671 0.541392 TCACAGGCCGATGCAAGTAT 59.459 50.000 0.00 0.00 40.13 2.12
2627 2747 3.430374 GGTGTACTACGGTGAATCTGCAT 60.430 47.826 0.00 0.00 0.00 3.96
2631 2751 3.022406 GAGGGTGTACTACGGTGAATCT 58.978 50.000 0.00 0.00 0.00 2.40
2637 2757 4.326255 CGGAGGGTGTACTACGGT 57.674 61.111 0.00 0.00 41.08 4.83
2643 2763 5.979288 ATATTATGAGACGGAGGGTGTAC 57.021 43.478 0.00 0.00 0.00 2.90
2647 2767 7.974504 ACATTTTATATTATGAGACGGAGGGT 58.025 34.615 0.00 0.00 0.00 4.34
2648 2768 8.848474 AACATTTTATATTATGAGACGGAGGG 57.152 34.615 0.00 0.00 0.00 4.30
2670 2790 7.119709 TCCCTTCGTCTCATGATATAAAACA 57.880 36.000 0.00 0.00 0.00 2.83
2689 2809 9.708092 GACGATTAGCTTAAATAATACTCCCTT 57.292 33.333 0.00 0.00 0.00 3.95
2698 2818 7.327761 GGCGAGTATGACGATTAGCTTAAATAA 59.672 37.037 0.00 0.00 0.00 1.40
2699 2819 6.805271 GGCGAGTATGACGATTAGCTTAAATA 59.195 38.462 0.00 0.00 0.00 1.40
2703 2823 3.819337 AGGCGAGTATGACGATTAGCTTA 59.181 43.478 0.00 0.00 0.00 3.09
2705 2825 2.231529 AGGCGAGTATGACGATTAGCT 58.768 47.619 0.00 0.00 0.00 3.32
2706 2826 2.708386 AGGCGAGTATGACGATTAGC 57.292 50.000 0.00 0.00 0.00 3.09
2707 2827 4.916249 GGTTTAGGCGAGTATGACGATTAG 59.084 45.833 0.00 0.00 0.00 1.73
2708 2828 4.261741 GGGTTTAGGCGAGTATGACGATTA 60.262 45.833 0.00 0.00 0.00 1.75
2710 2830 2.035576 GGGTTTAGGCGAGTATGACGAT 59.964 50.000 0.00 0.00 0.00 3.73
2712 2832 1.407979 AGGGTTTAGGCGAGTATGACG 59.592 52.381 0.00 0.00 0.00 4.35
2713 2833 3.195661 CAAGGGTTTAGGCGAGTATGAC 58.804 50.000 0.00 0.00 0.00 3.06
2714 2834 2.835764 ACAAGGGTTTAGGCGAGTATGA 59.164 45.455 0.00 0.00 0.00 2.15
2715 2835 3.261981 ACAAGGGTTTAGGCGAGTATG 57.738 47.619 0.00 0.00 0.00 2.39
2716 2836 3.994931 AACAAGGGTTTAGGCGAGTAT 57.005 42.857 0.00 0.00 31.83 2.12
2717 2837 3.071312 TGAAACAAGGGTTTAGGCGAGTA 59.929 43.478 0.00 0.00 46.84 2.59
2718 2838 2.158726 TGAAACAAGGGTTTAGGCGAGT 60.159 45.455 0.00 0.00 46.84 4.18
2719 2839 2.500229 TGAAACAAGGGTTTAGGCGAG 58.500 47.619 0.00 0.00 46.84 5.03
2720 2840 2.642154 TGAAACAAGGGTTTAGGCGA 57.358 45.000 0.00 0.00 46.84 5.54
2721 2841 3.719173 TTTGAAACAAGGGTTTAGGCG 57.281 42.857 0.00 0.00 46.84 5.52
2740 2860 6.380095 TTGTGTTTAGGCGAGTATGTTTTT 57.620 33.333 0.00 0.00 0.00 1.94
2741 2861 6.569179 ATTGTGTTTAGGCGAGTATGTTTT 57.431 33.333 0.00 0.00 0.00 2.43
2742 2862 6.651643 TGTATTGTGTTTAGGCGAGTATGTTT 59.348 34.615 0.00 0.00 0.00 2.83
2743 2863 6.167685 TGTATTGTGTTTAGGCGAGTATGTT 58.832 36.000 0.00 0.00 0.00 2.71
2744 2864 5.726397 TGTATTGTGTTTAGGCGAGTATGT 58.274 37.500 0.00 0.00 0.00 2.29
2751 2871 4.150980 TCGAAGTTGTATTGTGTTTAGGCG 59.849 41.667 0.00 0.00 0.00 5.52
2761 2881 1.785881 CGCGCTTCGAAGTTGTATTG 58.214 50.000 25.24 8.75 41.67 1.90
2763 2883 1.011968 TGCGCGCTTCGAAGTTGTAT 61.012 50.000 33.29 0.00 41.67 2.29
2764 2884 1.662133 TGCGCGCTTCGAAGTTGTA 60.662 52.632 33.29 12.50 41.67 2.41
2765 2885 2.964925 TGCGCGCTTCGAAGTTGT 60.965 55.556 33.29 0.00 41.67 3.32
2766 2886 2.497628 GTGCGCGCTTCGAAGTTG 60.498 61.111 33.29 18.72 41.67 3.16
2768 2888 1.445410 TATGTGCGCGCTTCGAAGT 60.445 52.632 33.29 13.09 41.67 3.01
2769 2889 1.013323 GTATGTGCGCGCTTCGAAG 60.013 57.895 33.29 21.02 41.67 3.79
2770 2890 1.734837 TGTATGTGCGCGCTTCGAA 60.735 52.632 33.29 8.62 41.67 3.71
2771 2891 2.126267 TGTATGTGCGCGCTTCGA 60.126 55.556 33.29 9.09 41.67 3.71
2772 2892 2.020016 GTGTATGTGCGCGCTTCG 59.980 61.111 33.29 0.00 42.12 3.79
2775 2895 0.029700 TATACGTGTATGTGCGCGCT 59.970 50.000 33.29 15.25 45.06 5.92
2776 2896 0.847670 TTATACGTGTATGTGCGCGC 59.152 50.000 27.26 27.26 45.06 6.86
2777 2897 3.763756 ATTTATACGTGTATGTGCGCG 57.236 42.857 0.00 0.00 46.38 6.86
2779 2899 5.459434 TGGTGTATTTATACGTGTATGTGCG 59.541 40.000 0.00 0.00 36.06 5.34
2780 2900 6.831727 TGGTGTATTTATACGTGTATGTGC 57.168 37.500 0.00 0.00 36.06 4.57
2781 2901 8.657729 TGTTTGGTGTATTTATACGTGTATGTG 58.342 33.333 0.00 0.00 36.06 3.21
2782 2902 8.774890 TGTTTGGTGTATTTATACGTGTATGT 57.225 30.769 0.00 0.00 36.06 2.29
2783 2903 9.858247 GATGTTTGGTGTATTTATACGTGTATG 57.142 33.333 0.00 0.00 36.06 2.39
2784 2904 9.602568 TGATGTTTGGTGTATTTATACGTGTAT 57.397 29.630 0.00 0.00 36.06 2.29
2787 2907 7.424167 CGTTGATGTTTGGTGTATTTATACGTG 59.576 37.037 0.00 0.00 36.06 4.49
2789 2909 7.457868 ACGTTGATGTTTGGTGTATTTATACG 58.542 34.615 0.00 0.00 36.06 3.06
2790 2910 9.615295 AAACGTTGATGTTTGGTGTATTTATAC 57.385 29.630 0.00 0.00 40.40 1.47
2794 2914 7.262048 AGAAAACGTTGATGTTTGGTGTATTT 58.738 30.769 0.00 0.00 41.01 1.40
2796 2916 6.385649 AGAAAACGTTGATGTTTGGTGTAT 57.614 33.333 0.00 0.00 41.01 2.29
2799 2919 6.401955 AAAAGAAAACGTTGATGTTTGGTG 57.598 33.333 0.00 0.00 41.01 4.17
2824 3091 1.078356 GACCGAGGGCCTCCTTTTC 60.078 63.158 27.36 14.19 45.05 2.29
2832 3099 0.462759 CTTTGATGAGACCGAGGGCC 60.463 60.000 0.00 0.00 0.00 5.80
2856 3123 3.508840 GGGTGTATGGCTGTGCGC 61.509 66.667 0.00 0.00 38.13 6.09
2858 3125 1.026718 GTCTGGGTGTATGGCTGTGC 61.027 60.000 0.00 0.00 0.00 4.57
2871 3138 2.286872 GTCTCATGCTCAATGTCTGGG 58.713 52.381 0.00 0.00 37.56 4.45
2875 3142 1.293924 CCCGTCTCATGCTCAATGTC 58.706 55.000 0.00 0.00 37.56 3.06
2887 3154 1.470098 TGTAAACGCTAGACCCGTCTC 59.530 52.381 0.00 0.00 40.93 3.36
2893 3160 7.148540 TGTCATTTACAATGTAAACGCTAGACC 60.149 37.037 19.36 8.92 34.29 3.85
2932 3200 9.869844 GACAAATAAAGAGTATCATTTCATCCG 57.130 33.333 0.00 0.00 37.82 4.18
2943 3213 7.831193 AGTCTTGGCATGACAAATAAAGAGTAT 59.169 33.333 28.49 6.74 36.94 2.12
2963 3233 6.789262 AGTTGTGAAAATTGTCAGAGTCTTG 58.211 36.000 0.00 0.00 0.00 3.02
2973 3243 7.719483 ACATTGAGATGAGTTGTGAAAATTGT 58.281 30.769 0.00 0.00 36.73 2.71
2975 3245 8.174733 AGACATTGAGATGAGTTGTGAAAATT 57.825 30.769 0.00 0.00 36.73 1.82
3006 3276 8.641541 ACCAATGATTATATAGCCCAAACTTTG 58.358 33.333 0.00 0.00 0.00 2.77
3013 3283 5.247337 TCGACACCAATGATTATATAGCCCA 59.753 40.000 0.00 0.00 0.00 5.36
3014 3284 5.581085 GTCGACACCAATGATTATATAGCCC 59.419 44.000 11.55 0.00 0.00 5.19
3036 3306 4.153958 AGATCGAGATGCATTAGTCGTC 57.846 45.455 20.04 16.95 34.07 4.20
3039 3309 5.690816 TCGTAAGATCGAGATGCATTAGTC 58.309 41.667 0.00 0.00 45.01 2.59
3075 3346 5.708230 ACTATTCCCTCTATAGTCTTCTGCG 59.292 44.000 0.00 0.00 34.53 5.18
3078 3349 9.250246 GCATAACTATTCCCTCTATAGTCTTCT 57.750 37.037 0.00 0.00 37.73 2.85
3082 3353 6.183360 CGGGCATAACTATTCCCTCTATAGTC 60.183 46.154 0.00 0.00 37.05 2.59
3086 3357 4.684724 TCGGGCATAACTATTCCCTCTAT 58.315 43.478 3.38 0.00 37.05 1.98
3087 3358 4.122337 TCGGGCATAACTATTCCCTCTA 57.878 45.455 3.38 0.00 37.05 2.43
3097 3368 3.855159 GACCACTTCGGGCATAACT 57.145 52.632 0.00 0.00 45.64 2.24
3106 3377 1.874019 CGCCGATGAGACCACTTCG 60.874 63.158 0.00 0.00 37.25 3.79
3117 3388 1.003545 GTTTCACCATCATCGCCGATG 60.004 52.381 20.70 20.70 42.09 3.84
3139 3410 1.134068 GGTCTCCAGGGATAAAGCCAC 60.134 57.143 0.00 0.00 0.00 5.01
3142 3413 2.774809 AGAAGGTCTCCAGGGATAAAGC 59.225 50.000 0.00 0.00 0.00 3.51
3143 3414 3.432890 GCAGAAGGTCTCCAGGGATAAAG 60.433 52.174 0.00 0.00 0.00 1.85
3151 3422 1.799933 ATAGGGCAGAAGGTCTCCAG 58.200 55.000 0.00 0.00 0.00 3.86
3152 3423 2.270434 AATAGGGCAGAAGGTCTCCA 57.730 50.000 0.00 0.00 0.00 3.86
3153 3424 3.653835 AAAATAGGGCAGAAGGTCTCC 57.346 47.619 0.00 0.00 0.00 3.71
3188 3459 4.611807 CGAAGCTAGCTACCTAATCACGAG 60.612 50.000 19.70 0.00 0.00 4.18
3189 3460 3.250280 CGAAGCTAGCTACCTAATCACGA 59.750 47.826 19.70 0.00 0.00 4.35
3190 3461 3.556513 CGAAGCTAGCTACCTAATCACG 58.443 50.000 19.70 8.82 0.00 4.35
3191 3462 3.305471 CCCGAAGCTAGCTACCTAATCAC 60.305 52.174 19.70 0.90 0.00 3.06
3192 3463 2.891580 CCCGAAGCTAGCTACCTAATCA 59.108 50.000 19.70 0.00 0.00 2.57
3193 3464 2.231721 CCCCGAAGCTAGCTACCTAATC 59.768 54.545 19.70 9.76 0.00 1.75
3194 3465 2.158355 TCCCCGAAGCTAGCTACCTAAT 60.158 50.000 19.70 0.00 0.00 1.73
3195 3466 1.216175 TCCCCGAAGCTAGCTACCTAA 59.784 52.381 19.70 0.00 0.00 2.69
3196 3467 0.848735 TCCCCGAAGCTAGCTACCTA 59.151 55.000 19.70 0.00 0.00 3.08
3197 3468 0.468400 CTCCCCGAAGCTAGCTACCT 60.468 60.000 19.70 1.41 0.00 3.08
3198 3469 0.467659 TCTCCCCGAAGCTAGCTACC 60.468 60.000 19.70 12.14 0.00 3.18
3199 3470 0.955905 CTCTCCCCGAAGCTAGCTAC 59.044 60.000 19.70 0.00 0.00 3.58
3200 3471 0.844660 TCTCTCCCCGAAGCTAGCTA 59.155 55.000 19.70 0.00 0.00 3.32
3201 3472 0.753848 GTCTCTCCCCGAAGCTAGCT 60.754 60.000 12.68 12.68 0.00 3.32
3202 3473 1.038130 TGTCTCTCCCCGAAGCTAGC 61.038 60.000 6.62 6.62 0.00 3.42
3203 3474 1.475403 TTGTCTCTCCCCGAAGCTAG 58.525 55.000 0.00 0.00 0.00 3.42
3204 3475 2.160721 ATTGTCTCTCCCCGAAGCTA 57.839 50.000 0.00 0.00 0.00 3.32
3205 3476 2.160721 TATTGTCTCTCCCCGAAGCT 57.839 50.000 0.00 0.00 0.00 3.74
3206 3477 2.548920 CCATATTGTCTCTCCCCGAAGC 60.549 54.545 0.00 0.00 0.00 3.86
3207 3478 2.700897 ACCATATTGTCTCTCCCCGAAG 59.299 50.000 0.00 0.00 0.00 3.79
3208 3479 2.698797 GACCATATTGTCTCTCCCCGAA 59.301 50.000 0.00 0.00 32.39 4.30
3209 3480 2.091278 AGACCATATTGTCTCTCCCCGA 60.091 50.000 3.64 0.00 41.75 5.14
3210 3481 2.320781 AGACCATATTGTCTCTCCCCG 58.679 52.381 3.64 0.00 41.75 5.73
3211 3482 5.799213 CAATAGACCATATTGTCTCTCCCC 58.201 45.833 12.47 0.00 44.30 4.81
3212 3483 5.012561 AGCAATAGACCATATTGTCTCTCCC 59.987 44.000 12.47 2.15 44.30 4.30
3213 3484 6.107901 AGCAATAGACCATATTGTCTCTCC 57.892 41.667 12.47 1.84 44.30 3.71
3214 3485 7.093992 GGTAGCAATAGACCATATTGTCTCTC 58.906 42.308 12.47 2.23 44.30 3.20
3215 3486 6.554982 TGGTAGCAATAGACCATATTGTCTCT 59.445 38.462 12.47 6.87 44.30 3.10
3216 3487 6.759272 TGGTAGCAATAGACCATATTGTCTC 58.241 40.000 12.47 0.00 44.30 3.36
3217 3488 6.747414 TGGTAGCAATAGACCATATTGTCT 57.253 37.500 13.51 13.51 46.90 3.41
3225 3496 4.381185 CGTAACTGTGGTAGCAATAGACCA 60.381 45.833 12.75 0.00 43.55 4.02
3226 3497 4.110482 CGTAACTGTGGTAGCAATAGACC 58.890 47.826 12.75 0.00 36.17 3.85
3227 3498 4.561606 CACGTAACTGTGGTAGCAATAGAC 59.438 45.833 12.75 3.07 36.20 2.59
3228 3499 4.460034 TCACGTAACTGTGGTAGCAATAGA 59.540 41.667 12.75 0.00 40.31 1.98
3229 3500 4.740268 TCACGTAACTGTGGTAGCAATAG 58.260 43.478 0.00 0.79 40.31 1.73
3230 3501 4.787260 TCACGTAACTGTGGTAGCAATA 57.213 40.909 0.00 0.00 40.31 1.90
3231 3502 3.671008 TCACGTAACTGTGGTAGCAAT 57.329 42.857 0.00 0.00 40.31 3.56
3232 3503 3.125316 GTTCACGTAACTGTGGTAGCAA 58.875 45.455 0.00 0.00 40.31 3.91
3233 3504 2.746269 GTTCACGTAACTGTGGTAGCA 58.254 47.619 0.00 0.00 40.31 3.49
3234 3505 1.717645 CGTTCACGTAACTGTGGTAGC 59.282 52.381 0.00 0.00 40.31 3.58
3247 3518 3.761657 TGTTATAGGTGCTACGTTCACG 58.238 45.455 12.47 0.00 46.33 4.35
3248 3519 4.741342 ACTGTTATAGGTGCTACGTTCAC 58.259 43.478 10.93 10.93 0.00 3.18
3249 3520 4.460034 TGACTGTTATAGGTGCTACGTTCA 59.540 41.667 0.00 0.00 0.00 3.18
3250 3521 4.990257 TGACTGTTATAGGTGCTACGTTC 58.010 43.478 0.00 0.00 0.00 3.95
3251 3522 5.047519 ACTTGACTGTTATAGGTGCTACGTT 60.048 40.000 0.00 0.00 0.00 3.99
3252 3523 4.461781 ACTTGACTGTTATAGGTGCTACGT 59.538 41.667 0.00 0.00 0.00 3.57
3253 3524 4.995124 ACTTGACTGTTATAGGTGCTACG 58.005 43.478 0.00 0.00 0.00 3.51
3254 3525 5.127356 AGGACTTGACTGTTATAGGTGCTAC 59.873 44.000 0.00 0.00 0.00 3.58
3255 3526 5.269991 AGGACTTGACTGTTATAGGTGCTA 58.730 41.667 0.00 0.00 0.00 3.49
3256 3527 4.097418 AGGACTTGACTGTTATAGGTGCT 58.903 43.478 0.00 0.00 0.00 4.40
3257 3528 4.473477 AGGACTTGACTGTTATAGGTGC 57.527 45.455 0.00 0.00 0.00 5.01
3258 3529 6.603997 AGTCTAGGACTTGACTGTTATAGGTG 59.396 42.308 14.08 0.00 40.28 4.00
3259 3530 6.733509 AGTCTAGGACTTGACTGTTATAGGT 58.266 40.000 14.08 0.00 40.28 3.08
3273 3544 0.679505 TGCACGCAAAGTCTAGGACT 59.320 50.000 0.00 0.00 45.64 3.85
3274 3545 0.790814 GTGCACGCAAAGTCTAGGAC 59.209 55.000 0.00 0.00 0.00 3.85
3275 3546 0.391228 TGTGCACGCAAAGTCTAGGA 59.609 50.000 13.13 0.00 0.00 2.94
3276 3547 1.394917 GATGTGCACGCAAAGTCTAGG 59.605 52.381 13.13 0.00 0.00 3.02
3277 3548 1.394917 GGATGTGCACGCAAAGTCTAG 59.605 52.381 13.13 0.00 0.00 2.43
3278 3549 1.001974 AGGATGTGCACGCAAAGTCTA 59.998 47.619 13.13 0.00 0.00 2.59
3279 3550 0.250467 AGGATGTGCACGCAAAGTCT 60.250 50.000 13.13 0.00 0.00 3.24
3280 3551 0.593128 AAGGATGTGCACGCAAAGTC 59.407 50.000 13.13 3.28 0.00 3.01
3281 3552 0.311790 CAAGGATGTGCACGCAAAGT 59.688 50.000 13.13 0.00 0.00 2.66
3282 3553 0.311790 ACAAGGATGTGCACGCAAAG 59.688 50.000 13.13 2.95 38.69 2.77
3283 3554 0.310543 GACAAGGATGTGCACGCAAA 59.689 50.000 13.13 0.00 40.74 3.68
3284 3555 1.514678 GGACAAGGATGTGCACGCAA 61.515 55.000 13.13 0.00 46.21 4.85
3285 3556 1.965930 GGACAAGGATGTGCACGCA 60.966 57.895 13.13 0.00 46.21 5.24
3286 3557 2.870372 GGACAAGGATGTGCACGC 59.130 61.111 13.13 6.67 46.21 5.34
3291 3562 2.738846 CACTCGAAAGGACAAGGATGTG 59.261 50.000 0.00 0.00 40.74 3.21
3292 3563 2.368875 ACACTCGAAAGGACAAGGATGT 59.631 45.455 0.00 0.00 44.25 3.06
3293 3564 2.996621 GACACTCGAAAGGACAAGGATG 59.003 50.000 0.00 0.00 0.00 3.51
3294 3565 2.900546 AGACACTCGAAAGGACAAGGAT 59.099 45.455 0.00 0.00 0.00 3.24
3295 3566 2.317040 AGACACTCGAAAGGACAAGGA 58.683 47.619 0.00 0.00 0.00 3.36
3296 3567 2.821991 AGACACTCGAAAGGACAAGG 57.178 50.000 0.00 0.00 0.00 3.61
3297 3568 4.477780 GAGTAGACACTCGAAAGGACAAG 58.522 47.826 0.00 0.00 41.79 3.16
3298 3569 4.500603 GAGTAGACACTCGAAAGGACAA 57.499 45.455 0.00 0.00 41.79 3.18
3315 3586 2.159240 CCGCACTAGTCATGCTTGAGTA 60.159 50.000 14.52 14.52 41.10 2.59
3316 3587 1.404717 CCGCACTAGTCATGCTTGAGT 60.405 52.381 13.84 13.84 41.10 3.41
3317 3588 1.284657 CCGCACTAGTCATGCTTGAG 58.715 55.000 1.91 0.00 41.10 3.02
3318 3589 0.108186 CCCGCACTAGTCATGCTTGA 60.108 55.000 0.00 0.00 41.10 3.02
3319 3590 1.091771 CCCCGCACTAGTCATGCTTG 61.092 60.000 0.00 0.00 41.10 4.01
3320 3591 1.221840 CCCCGCACTAGTCATGCTT 59.778 57.895 0.00 0.00 41.10 3.91
3321 3592 2.735772 CCCCCGCACTAGTCATGCT 61.736 63.158 0.00 0.00 41.10 3.79
3322 3593 2.203070 CCCCCGCACTAGTCATGC 60.203 66.667 0.00 0.00 39.81 4.06
3323 3594 2.203070 GCCCCCGCACTAGTCATG 60.203 66.667 0.00 0.00 34.03 3.07
3324 3595 3.849951 CGCCCCCGCACTAGTCAT 61.850 66.667 0.00 0.00 34.03 3.06
3334 3605 1.086696 CAAATATCTATGCGCCCCCG 58.913 55.000 4.18 0.00 37.57 5.73
3335 3606 2.200373 ACAAATATCTATGCGCCCCC 57.800 50.000 4.18 0.00 0.00 5.40
3336 3607 2.228822 CCAACAAATATCTATGCGCCCC 59.771 50.000 4.18 0.00 0.00 5.80
3337 3608 2.884639 ACCAACAAATATCTATGCGCCC 59.115 45.455 4.18 0.00 0.00 6.13
3338 3609 3.304659 CCACCAACAAATATCTATGCGCC 60.305 47.826 4.18 0.00 0.00 6.53
3339 3610 3.563808 TCCACCAACAAATATCTATGCGC 59.436 43.478 0.00 0.00 0.00 6.09
3340 3611 4.816385 AGTCCACCAACAAATATCTATGCG 59.184 41.667 0.00 0.00 0.00 4.73
3341 3612 6.318648 TCAAGTCCACCAACAAATATCTATGC 59.681 38.462 0.00 0.00 0.00 3.14
3342 3613 7.864108 TCAAGTCCACCAACAAATATCTATG 57.136 36.000 0.00 0.00 0.00 2.23
3343 3614 7.721399 GGATCAAGTCCACCAACAAATATCTAT 59.279 37.037 0.00 0.00 46.96 1.98
3344 3615 7.054124 GGATCAAGTCCACCAACAAATATCTA 58.946 38.462 0.00 0.00 46.96 1.98
3345 3616 5.888161 GGATCAAGTCCACCAACAAATATCT 59.112 40.000 0.00 0.00 46.96 1.98
3346 3617 6.136541 GGATCAAGTCCACCAACAAATATC 57.863 41.667 0.00 0.00 46.96 1.63
3360 3631 1.718757 GGGCGTGCATGGATCAAGTC 61.719 60.000 8.27 0.00 0.00 3.01
3361 3632 1.750399 GGGCGTGCATGGATCAAGT 60.750 57.895 8.27 0.00 0.00 3.16
3362 3633 1.105167 ATGGGCGTGCATGGATCAAG 61.105 55.000 8.27 0.00 0.00 3.02
3363 3634 0.182299 TATGGGCGTGCATGGATCAA 59.818 50.000 8.27 0.00 0.00 2.57
3364 3635 0.250424 CTATGGGCGTGCATGGATCA 60.250 55.000 8.27 0.00 0.00 2.92
3365 3636 0.957395 CCTATGGGCGTGCATGGATC 60.957 60.000 8.27 0.00 0.00 3.36
3366 3637 1.073722 CCTATGGGCGTGCATGGAT 59.926 57.895 8.27 0.00 0.00 3.41
3367 3638 2.510411 CCTATGGGCGTGCATGGA 59.490 61.111 8.27 0.00 0.00 3.41
3368 3639 2.416107 ATCCCTATGGGCGTGCATGG 62.416 60.000 8.27 0.00 43.94 3.66
3369 3640 0.324614 TATCCCTATGGGCGTGCATG 59.675 55.000 0.09 0.09 43.94 4.06
3370 3641 0.324943 GTATCCCTATGGGCGTGCAT 59.675 55.000 0.00 0.00 43.94 3.96
3371 3642 1.752198 GTATCCCTATGGGCGTGCA 59.248 57.895 0.00 0.00 43.94 4.57
3372 3643 1.003718 GGTATCCCTATGGGCGTGC 60.004 63.158 0.00 0.00 43.94 5.34
3373 3644 1.677552 GGGTATCCCTATGGGCGTG 59.322 63.158 0.00 0.00 43.94 5.34
3374 3645 4.227618 GGGTATCCCTATGGGCGT 57.772 61.111 0.00 0.00 43.94 5.68
3383 3654 3.710165 GGTGTATATAGGCAGGGTATCCC 59.290 52.174 0.00 0.00 45.90 3.85
3384 3655 4.406003 CAGGTGTATATAGGCAGGGTATCC 59.594 50.000 0.00 0.00 0.00 2.59
3385 3656 5.024118 ACAGGTGTATATAGGCAGGGTATC 58.976 45.833 0.00 0.00 0.00 2.24
3386 3657 5.024803 ACAGGTGTATATAGGCAGGGTAT 57.975 43.478 0.00 0.00 0.00 2.73
3387 3658 4.480777 ACAGGTGTATATAGGCAGGGTA 57.519 45.455 0.00 0.00 0.00 3.69
3388 3659 3.346146 ACAGGTGTATATAGGCAGGGT 57.654 47.619 0.00 0.00 0.00 4.34
3389 3660 4.021368 GTGTACAGGTGTATATAGGCAGGG 60.021 50.000 0.00 0.00 32.54 4.45
3390 3661 4.321008 CGTGTACAGGTGTATATAGGCAGG 60.321 50.000 7.41 0.00 32.54 4.85
3391 3662 4.321008 CCGTGTACAGGTGTATATAGGCAG 60.321 50.000 14.08 0.00 32.54 4.85
3392 3663 3.570975 CCGTGTACAGGTGTATATAGGCA 59.429 47.826 14.08 0.00 32.54 4.75
3393 3664 3.571401 ACCGTGTACAGGTGTATATAGGC 59.429 47.826 14.08 0.00 41.10 3.93
3403 3674 1.589803 GCTTTTCACCGTGTACAGGT 58.410 50.000 14.08 12.01 43.97 4.00
3404 3675 0.872388 GGCTTTTCACCGTGTACAGG 59.128 55.000 8.61 8.61 0.00 4.00
3405 3676 0.872388 GGGCTTTTCACCGTGTACAG 59.128 55.000 0.00 0.00 0.00 2.74
3406 3677 0.180642 TGGGCTTTTCACCGTGTACA 59.819 50.000 0.00 0.00 0.00 2.90
3407 3678 1.199097 CATGGGCTTTTCACCGTGTAC 59.801 52.381 0.00 0.00 38.63 2.90
3408 3679 1.529226 CATGGGCTTTTCACCGTGTA 58.471 50.000 0.00 0.00 38.63 2.90
3409 3680 1.178534 CCATGGGCTTTTCACCGTGT 61.179 55.000 2.85 0.00 41.22 4.49
3410 3681 1.178534 ACCATGGGCTTTTCACCGTG 61.179 55.000 18.09 0.00 42.20 4.94
3411 3682 0.402504 TACCATGGGCTTTTCACCGT 59.597 50.000 18.09 0.00 0.00 4.83
3412 3683 1.540267 TTACCATGGGCTTTTCACCG 58.460 50.000 18.09 0.00 0.00 4.94
3413 3684 5.010012 CAGATATTACCATGGGCTTTTCACC 59.990 44.000 18.09 0.00 0.00 4.02
3414 3685 5.827797 TCAGATATTACCATGGGCTTTTCAC 59.172 40.000 18.09 0.51 0.00 3.18
3415 3686 6.012337 TCAGATATTACCATGGGCTTTTCA 57.988 37.500 18.09 0.00 0.00 2.69
3416 3687 6.959639 TTCAGATATTACCATGGGCTTTTC 57.040 37.500 18.09 7.39 0.00 2.29
3417 3688 7.564660 TCATTTCAGATATTACCATGGGCTTTT 59.435 33.333 18.09 0.00 0.00 2.27
3418 3689 7.068702 TCATTTCAGATATTACCATGGGCTTT 58.931 34.615 18.09 0.00 0.00 3.51
3419 3690 6.613699 TCATTTCAGATATTACCATGGGCTT 58.386 36.000 18.09 2.04 0.00 4.35
3420 3691 6.204852 TCATTTCAGATATTACCATGGGCT 57.795 37.500 18.09 2.23 0.00 5.19
3421 3692 6.491403 ACTTCATTTCAGATATTACCATGGGC 59.509 38.462 18.09 0.00 0.00 5.36
3422 3693 8.355169 CAACTTCATTTCAGATATTACCATGGG 58.645 37.037 18.09 0.00 0.00 4.00
3423 3694 7.864379 GCAACTTCATTTCAGATATTACCATGG 59.136 37.037 11.19 11.19 0.00 3.66
3424 3695 8.407832 TGCAACTTCATTTCAGATATTACCATG 58.592 33.333 0.00 0.00 0.00 3.66
3425 3696 8.523915 TGCAACTTCATTTCAGATATTACCAT 57.476 30.769 0.00 0.00 0.00 3.55
3426 3697 7.936496 TGCAACTTCATTTCAGATATTACCA 57.064 32.000 0.00 0.00 0.00 3.25
3427 3698 9.807649 AATTGCAACTTCATTTCAGATATTACC 57.192 29.630 0.00 0.00 0.00 2.85
3433 3704 9.415544 GAGTAAAATTGCAACTTCATTTCAGAT 57.584 29.630 0.00 0.00 0.00 2.90
3434 3705 8.412456 TGAGTAAAATTGCAACTTCATTTCAGA 58.588 29.630 0.00 0.00 0.00 3.27
3435 3706 8.578308 TGAGTAAAATTGCAACTTCATTTCAG 57.422 30.769 0.00 0.00 0.00 3.02
3436 3707 8.939201 TTGAGTAAAATTGCAACTTCATTTCA 57.061 26.923 0.00 0.00 0.00 2.69
3439 3710 9.598517 TCTTTTGAGTAAAATTGCAACTTCATT 57.401 25.926 0.00 0.00 35.39 2.57
3440 3711 9.252962 CTCTTTTGAGTAAAATTGCAACTTCAT 57.747 29.630 0.00 0.00 41.49 2.57
3441 3712 8.465999 TCTCTTTTGAGTAAAATTGCAACTTCA 58.534 29.630 0.00 0.00 46.30 3.02
3442 3713 8.856490 TCTCTTTTGAGTAAAATTGCAACTTC 57.144 30.769 0.00 0.00 46.30 3.01
3443 3714 9.252962 CATCTCTTTTGAGTAAAATTGCAACTT 57.747 29.630 0.00 0.00 46.30 2.66
3444 3715 7.869429 CCATCTCTTTTGAGTAAAATTGCAACT 59.131 33.333 0.00 0.00 46.30 3.16
3445 3716 7.867403 TCCATCTCTTTTGAGTAAAATTGCAAC 59.133 33.333 0.00 0.00 46.30 4.17
3446 3717 7.950512 TCCATCTCTTTTGAGTAAAATTGCAA 58.049 30.769 0.00 0.00 46.30 4.08
3447 3718 7.231317 ACTCCATCTCTTTTGAGTAAAATTGCA 59.769 33.333 0.00 0.00 46.30 4.08
3448 3719 7.597386 ACTCCATCTCTTTTGAGTAAAATTGC 58.403 34.615 0.00 0.00 46.30 3.56
3449 3720 9.403110 CAACTCCATCTCTTTTGAGTAAAATTG 57.597 33.333 0.00 0.00 46.30 2.32
3450 3721 8.579863 CCAACTCCATCTCTTTTGAGTAAAATT 58.420 33.333 0.00 0.00 46.30 1.82
3451 3722 7.177392 CCCAACTCCATCTCTTTTGAGTAAAAT 59.823 37.037 0.00 0.00 46.30 1.82
3452 3723 6.490040 CCCAACTCCATCTCTTTTGAGTAAAA 59.510 38.462 0.00 0.00 46.30 1.52
3453 3724 6.003950 CCCAACTCCATCTCTTTTGAGTAAA 58.996 40.000 0.00 0.00 46.30 2.01
3454 3725 5.514834 CCCCAACTCCATCTCTTTTGAGTAA 60.515 44.000 0.00 0.00 46.30 2.24
3455 3726 4.019321 CCCCAACTCCATCTCTTTTGAGTA 60.019 45.833 0.00 0.00 46.30 2.59
3456 3727 3.245052 CCCCAACTCCATCTCTTTTGAGT 60.245 47.826 0.00 0.00 46.30 3.41
3458 3729 2.041620 CCCCCAACTCCATCTCTTTTGA 59.958 50.000 0.00 0.00 0.00 2.69
3459 3730 2.041620 TCCCCCAACTCCATCTCTTTTG 59.958 50.000 0.00 0.00 0.00 2.44
3460 3731 2.310052 CTCCCCCAACTCCATCTCTTTT 59.690 50.000 0.00 0.00 0.00 2.27
3461 3732 1.918957 CTCCCCCAACTCCATCTCTTT 59.081 52.381 0.00 0.00 0.00 2.52
3462 3733 1.203492 ACTCCCCCAACTCCATCTCTT 60.203 52.381 0.00 0.00 0.00 2.85
3463 3734 0.419459 ACTCCCCCAACTCCATCTCT 59.581 55.000 0.00 0.00 0.00 3.10
3464 3735 2.043227 CTACTCCCCCAACTCCATCTC 58.957 57.143 0.00 0.00 0.00 2.75
3465 3736 1.972207 GCTACTCCCCCAACTCCATCT 60.972 57.143 0.00 0.00 0.00 2.90
3466 3737 0.470341 GCTACTCCCCCAACTCCATC 59.530 60.000 0.00 0.00 0.00 3.51
3467 3738 0.253160 TGCTACTCCCCCAACTCCAT 60.253 55.000 0.00 0.00 0.00 3.41
3468 3739 0.253160 ATGCTACTCCCCCAACTCCA 60.253 55.000 0.00 0.00 0.00 3.86
3469 3740 0.470341 GATGCTACTCCCCCAACTCC 59.530 60.000 0.00 0.00 0.00 3.85
3470 3741 0.470341 GGATGCTACTCCCCCAACTC 59.530 60.000 0.00 0.00 0.00 3.01
3471 3742 0.253160 TGGATGCTACTCCCCCAACT 60.253 55.000 0.00 0.00 34.12 3.16
3472 3743 0.623723 TTGGATGCTACTCCCCCAAC 59.376 55.000 0.00 0.00 34.12 3.77
3473 3744 0.623723 GTTGGATGCTACTCCCCCAA 59.376 55.000 0.00 0.00 34.12 4.12
3474 3745 0.548926 TGTTGGATGCTACTCCCCCA 60.549 55.000 0.15 0.00 34.12 4.96
3475 3746 0.846693 ATGTTGGATGCTACTCCCCC 59.153 55.000 0.15 0.00 34.12 5.40
3476 3747 2.301346 CAATGTTGGATGCTACTCCCC 58.699 52.381 0.15 0.00 34.12 4.81
3477 3748 2.945668 GACAATGTTGGATGCTACTCCC 59.054 50.000 0.15 0.00 34.12 4.30
3478 3749 2.945668 GGACAATGTTGGATGCTACTCC 59.054 50.000 0.15 0.00 35.74 3.85
3479 3750 3.873952 GAGGACAATGTTGGATGCTACTC 59.126 47.826 0.15 0.00 0.00 2.59
3480 3751 3.521126 AGAGGACAATGTTGGATGCTACT 59.479 43.478 0.15 0.00 0.00 2.57
3481 3752 3.624861 CAGAGGACAATGTTGGATGCTAC 59.375 47.826 0.00 0.00 0.00 3.58
3482 3753 3.877559 CAGAGGACAATGTTGGATGCTA 58.122 45.455 0.00 0.00 0.00 3.49
3483 3754 2.719739 CAGAGGACAATGTTGGATGCT 58.280 47.619 0.00 0.00 0.00 3.79
3484 3755 1.133790 GCAGAGGACAATGTTGGATGC 59.866 52.381 0.00 0.00 0.00 3.91
3485 3756 1.399440 CGCAGAGGACAATGTTGGATG 59.601 52.381 0.00 0.00 0.00 3.51
3486 3757 1.278985 TCGCAGAGGACAATGTTGGAT 59.721 47.619 0.00 0.00 0.00 3.41
3487 3758 0.684535 TCGCAGAGGACAATGTTGGA 59.315 50.000 0.00 0.00 0.00 3.53
3488 3759 3.231734 TCGCAGAGGACAATGTTGG 57.768 52.632 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.