Multiple sequence alignment - TraesCS3D01G235500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G235500 chr3D 100.000 2357 0 0 1 2357 325978734 325976378 0.000000e+00 4353
1 TraesCS3D01G235500 chr3D 100.000 369 0 0 2691 3059 325976044 325975676 0.000000e+00 682
2 TraesCS3D01G235500 chr3D 96.306 379 12 2 1 377 22138788 22138410 3.350000e-174 621
3 TraesCS3D01G235500 chr3A 94.649 1682 58 8 438 2108 439289451 439291111 0.000000e+00 2579
4 TraesCS3D01G235500 chr3A 92.432 370 26 2 2691 3059 468613474 468613842 7.510000e-146 527
5 TraesCS3D01G235500 chr3A 94.805 77 4 0 2275 2351 52203665 52203741 1.490000e-23 121
6 TraesCS3D01G235500 chr3B 96.447 1182 34 2 928 2109 423365261 423364088 0.000000e+00 1943
7 TraesCS3D01G235500 chr3B 92.432 370 26 2 2691 3059 694163833 694163465 7.510000e-146 527
8 TraesCS3D01G235500 chr3B 92.141 369 28 1 2691 3059 777835075 777835442 1.260000e-143 520
9 TraesCS3D01G235500 chr3B 84.615 416 40 8 542 941 423365688 423365281 2.860000e-105 392
10 TraesCS3D01G235500 chr3B 89.677 155 10 4 2120 2274 423364111 423363963 3.110000e-45 193
11 TraesCS3D01G235500 chr4D 97.290 369 10 0 2691 3059 88091559 88091927 7.200000e-176 627
12 TraesCS3D01G235500 chr4D 96.386 83 3 0 2275 2357 88091391 88091473 1.480000e-28 137
13 TraesCS3D01G235500 chr5D 96.296 378 13 1 1 377 408946893 408946516 1.200000e-173 619
14 TraesCS3D01G235500 chr5D 96.296 378 12 2 1 377 417815807 417815431 1.200000e-173 619
15 TraesCS3D01G235500 chr5D 96.011 376 13 2 1 375 59540569 59540195 7.250000e-171 610
16 TraesCS3D01G235500 chr5D 94.805 77 4 0 2275 2351 33671129 33671053 1.490000e-23 121
17 TraesCS3D01G235500 chr5D 94.805 77 4 0 2275 2351 432996595 432996671 1.490000e-23 121
18 TraesCS3D01G235500 chr1D 96.296 378 13 1 1 377 426750224 426749847 1.200000e-173 619
19 TraesCS3D01G235500 chr7D 96.032 378 14 1 1 377 387926 388303 5.610000e-172 614
20 TraesCS3D01G235500 chr7D 96.032 378 14 1 1 377 75296273 75295896 5.610000e-172 614
21 TraesCS3D01G235500 chr2D 96.032 378 14 1 1 377 28862932 28863309 5.610000e-172 614
22 TraesCS3D01G235500 chr2D 92.973 370 23 3 2692 3059 130848044 130848412 1.250000e-148 536
23 TraesCS3D01G235500 chr6D 96.021 377 14 1 1 376 430405489 430405865 2.020000e-171 612
24 TraesCS3D01G235500 chr6D 96.000 75 3 0 2275 2349 7156805 7156731 4.140000e-24 122
25 TraesCS3D01G235500 chr7B 93.225 369 25 0 2691 3059 706852848 706852480 7.460000e-151 544
26 TraesCS3D01G235500 chr5B 92.683 369 27 0 2691 3059 273857830 273858198 1.610000e-147 532
27 TraesCS3D01G235500 chr6B 92.162 370 27 2 2691 3059 261525975 261526343 3.500000e-144 521
28 TraesCS3D01G235500 chr6B 94.872 78 4 0 2274 2351 693791129 693791206 4.140000e-24 122
29 TraesCS3D01G235500 chr4B 92.162 370 27 2 2691 3059 627181655 627181287 3.500000e-144 521
30 TraesCS3D01G235500 chr2A 94.805 77 4 0 2275 2351 531556117 531556193 1.490000e-23 121
31 TraesCS3D01G235500 chr5A 91.667 84 7 0 2272 2355 631644981 631645064 1.930000e-22 117
32 TraesCS3D01G235500 chr5A 93.421 76 5 0 2274 2349 538340973 538340898 2.490000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G235500 chr3D 325975676 325978734 3058 True 2517.500000 4353 100.000000 1 3059 2 chr3D.!!$R2 3058
1 TraesCS3D01G235500 chr3A 439289451 439291111 1660 False 2579.000000 2579 94.649000 438 2108 1 chr3A.!!$F2 1670
2 TraesCS3D01G235500 chr3B 423363963 423365688 1725 True 842.666667 1943 90.246333 542 2274 3 chr3B.!!$R2 1732
3 TraesCS3D01G235500 chr4D 88091391 88091927 536 False 382.000000 627 96.838000 2275 3059 2 chr4D.!!$F1 784

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
678 693 0.107831 TGTCCGTTTGGGTCTCTTGG 59.892 55.0 0.0 0.0 37.0 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2245 2311 0.037605 ATGTTCGTCGAACCCTCACC 60.038 55.0 29.85 8.79 41.35 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.974645 AAATCTGGTCTACTGTGGTCAA 57.025 40.909 0.00 0.00 0.00 3.18
22 23 4.974645 AATCTGGTCTACTGTGGTCAAA 57.025 40.909 0.00 0.00 0.00 2.69
23 24 3.746045 TCTGGTCTACTGTGGTCAAAC 57.254 47.619 0.00 0.00 0.00 2.93
24 25 3.305720 TCTGGTCTACTGTGGTCAAACT 58.694 45.455 0.00 0.00 0.00 2.66
25 26 4.476297 TCTGGTCTACTGTGGTCAAACTA 58.524 43.478 0.00 0.00 0.00 2.24
26 27 5.084519 TCTGGTCTACTGTGGTCAAACTAT 58.915 41.667 0.00 0.00 0.00 2.12
27 28 5.047306 TCTGGTCTACTGTGGTCAAACTATG 60.047 44.000 0.00 0.00 0.00 2.23
28 29 4.020573 TGGTCTACTGTGGTCAAACTATGG 60.021 45.833 0.00 0.00 0.00 2.74
29 30 4.020485 GGTCTACTGTGGTCAAACTATGGT 60.020 45.833 0.00 0.00 0.00 3.55
30 31 5.169295 GTCTACTGTGGTCAAACTATGGTC 58.831 45.833 0.00 0.00 0.00 4.02
31 32 4.836175 TCTACTGTGGTCAAACTATGGTCA 59.164 41.667 0.00 0.00 0.00 4.02
32 33 4.431416 ACTGTGGTCAAACTATGGTCAA 57.569 40.909 0.00 0.00 0.00 3.18
33 34 4.787551 ACTGTGGTCAAACTATGGTCAAA 58.212 39.130 0.00 0.00 0.00 2.69
34 35 4.578928 ACTGTGGTCAAACTATGGTCAAAC 59.421 41.667 0.00 0.00 0.00 2.93
35 36 4.787551 TGTGGTCAAACTATGGTCAAACT 58.212 39.130 0.00 0.00 0.00 2.66
36 37 5.931294 TGTGGTCAAACTATGGTCAAACTA 58.069 37.500 0.00 0.00 0.00 2.24
37 38 5.761234 TGTGGTCAAACTATGGTCAAACTAC 59.239 40.000 0.00 0.00 0.00 2.73
38 39 5.995897 GTGGTCAAACTATGGTCAAACTACT 59.004 40.000 0.00 0.00 0.00 2.57
39 40 6.485648 GTGGTCAAACTATGGTCAAACTACTT 59.514 38.462 0.00 0.00 0.00 2.24
40 41 7.658575 GTGGTCAAACTATGGTCAAACTACTTA 59.341 37.037 0.00 0.00 0.00 2.24
41 42 8.380099 TGGTCAAACTATGGTCAAACTACTTAT 58.620 33.333 0.00 0.00 0.00 1.73
42 43 9.227777 GGTCAAACTATGGTCAAACTACTTATT 57.772 33.333 0.00 0.00 0.00 1.40
105 106 7.784633 TTTTGAATTTTGGTCAAATCTGGTC 57.215 32.000 0.81 0.00 42.82 4.02
106 107 6.729690 TTGAATTTTGGTCAAATCTGGTCT 57.270 33.333 0.00 0.00 33.60 3.85
107 108 7.831691 TTGAATTTTGGTCAAATCTGGTCTA 57.168 32.000 0.00 0.00 33.60 2.59
108 109 7.831691 TGAATTTTGGTCAAATCTGGTCTAA 57.168 32.000 0.00 0.00 33.60 2.10
109 110 7.657336 TGAATTTTGGTCAAATCTGGTCTAAC 58.343 34.615 0.00 0.00 33.60 2.34
110 111 7.505585 TGAATTTTGGTCAAATCTGGTCTAACT 59.494 33.333 0.00 0.00 33.60 2.24
111 112 6.633500 TTTTGGTCAAATCTGGTCTAACTG 57.367 37.500 0.00 0.00 0.00 3.16
112 113 4.974645 TGGTCAAATCTGGTCTAACTGT 57.025 40.909 0.00 0.00 0.00 3.55
113 114 4.641396 TGGTCAAATCTGGTCTAACTGTG 58.359 43.478 0.00 0.00 0.00 3.66
114 115 4.003648 GGTCAAATCTGGTCTAACTGTGG 58.996 47.826 0.00 0.00 0.00 4.17
115 116 4.505039 GGTCAAATCTGGTCTAACTGTGGT 60.505 45.833 0.00 0.00 0.00 4.16
116 117 4.691216 GTCAAATCTGGTCTAACTGTGGTC 59.309 45.833 0.00 0.00 0.00 4.02
117 118 4.346709 TCAAATCTGGTCTAACTGTGGTCA 59.653 41.667 0.00 0.00 0.00 4.02
118 119 4.974645 AATCTGGTCTAACTGTGGTCAA 57.025 40.909 0.00 0.00 0.00 3.18
119 120 4.974645 ATCTGGTCTAACTGTGGTCAAA 57.025 40.909 0.00 0.00 0.00 2.69
120 121 4.067972 TCTGGTCTAACTGTGGTCAAAC 57.932 45.455 0.00 0.00 0.00 2.93
121 122 3.709653 TCTGGTCTAACTGTGGTCAAACT 59.290 43.478 0.00 0.00 0.00 2.66
122 123 3.804036 TGGTCTAACTGTGGTCAAACTG 58.196 45.455 0.00 0.00 0.00 3.16
123 124 3.199071 TGGTCTAACTGTGGTCAAACTGT 59.801 43.478 0.00 0.00 34.11 3.55
124 125 3.560068 GGTCTAACTGTGGTCAAACTGTG 59.440 47.826 0.00 0.00 33.14 3.66
125 126 3.560068 GTCTAACTGTGGTCAAACTGTGG 59.440 47.826 0.00 0.00 33.14 4.17
126 127 2.507407 AACTGTGGTCAAACTGTGGT 57.493 45.000 0.00 0.00 33.14 4.16
127 128 2.507407 ACTGTGGTCAAACTGTGGTT 57.493 45.000 0.00 0.00 37.24 3.67
128 129 3.637911 ACTGTGGTCAAACTGTGGTTA 57.362 42.857 0.00 0.00 34.90 2.85
129 130 3.958018 ACTGTGGTCAAACTGTGGTTAA 58.042 40.909 0.00 0.00 34.90 2.01
130 131 4.337145 ACTGTGGTCAAACTGTGGTTAAA 58.663 39.130 0.00 0.00 34.90 1.52
131 132 4.157105 ACTGTGGTCAAACTGTGGTTAAAC 59.843 41.667 0.00 0.00 34.90 2.01
132 133 4.337145 TGTGGTCAAACTGTGGTTAAACT 58.663 39.130 0.00 0.00 34.90 2.66
133 134 5.498393 TGTGGTCAAACTGTGGTTAAACTA 58.502 37.500 0.00 0.00 34.90 2.24
134 135 6.123651 TGTGGTCAAACTGTGGTTAAACTAT 58.876 36.000 0.00 0.00 34.90 2.12
135 136 6.038825 TGTGGTCAAACTGTGGTTAAACTATG 59.961 38.462 0.00 0.00 34.90 2.23
136 137 5.533154 TGGTCAAACTGTGGTTAAACTATGG 59.467 40.000 0.00 0.00 34.90 2.74
137 138 5.533528 GGTCAAACTGTGGTTAAACTATGGT 59.466 40.000 0.00 0.00 34.90 3.55
138 139 6.293790 GGTCAAACTGTGGTTAAACTATGGTC 60.294 42.308 0.00 0.00 34.90 4.02
139 140 6.261381 GTCAAACTGTGGTTAAACTATGGTCA 59.739 38.462 0.00 0.00 34.90 4.02
140 141 6.829298 TCAAACTGTGGTTAAACTATGGTCAA 59.171 34.615 0.00 0.00 34.90 3.18
141 142 7.339721 TCAAACTGTGGTTAAACTATGGTCAAA 59.660 33.333 0.00 0.00 34.90 2.69
142 143 6.628919 ACTGTGGTTAAACTATGGTCAAAC 57.371 37.500 0.00 0.00 0.00 2.93
143 144 6.362248 ACTGTGGTTAAACTATGGTCAAACT 58.638 36.000 0.00 0.00 0.00 2.66
144 145 7.511268 ACTGTGGTTAAACTATGGTCAAACTA 58.489 34.615 0.00 0.00 0.00 2.24
145 146 7.443272 ACTGTGGTTAAACTATGGTCAAACTAC 59.557 37.037 12.76 12.76 34.84 2.73
146 147 7.511268 TGTGGTTAAACTATGGTCAAACTACT 58.489 34.615 17.35 0.00 35.07 2.57
147 148 7.994334 TGTGGTTAAACTATGGTCAAACTACTT 59.006 33.333 17.35 0.00 35.07 2.24
148 149 9.492973 GTGGTTAAACTATGGTCAAACTACTTA 57.507 33.333 12.53 0.00 33.25 2.24
215 216 8.739972 AGAACAATAGTTTCAAACTCAAACAGT 58.260 29.630 5.92 0.00 41.77 3.55
216 217 8.687824 AACAATAGTTTCAAACTCAAACAGTG 57.312 30.769 5.92 0.88 41.77 3.66
217 218 8.050778 ACAATAGTTTCAAACTCAAACAGTGA 57.949 30.769 5.92 0.00 41.77 3.41
218 219 8.519526 ACAATAGTTTCAAACTCAAACAGTGAA 58.480 29.630 5.92 0.00 41.77 3.18
219 220 9.352784 CAATAGTTTCAAACTCAAACAGTGAAA 57.647 29.630 5.92 0.00 41.77 2.69
223 224 9.520204 AGTTTCAAACTCAAACAGTGAAATATG 57.480 29.630 0.00 0.00 37.02 1.78
224 225 9.301153 GTTTCAAACTCAAACAGTGAAATATGT 57.699 29.630 0.00 0.00 35.22 2.29
225 226 8.854979 TTCAAACTCAAACAGTGAAATATGTG 57.145 30.769 0.00 0.00 35.22 3.21
226 227 8.219546 TCAAACTCAAACAGTGAAATATGTGA 57.780 30.769 0.00 0.00 35.22 3.58
227 228 8.128582 TCAAACTCAAACAGTGAAATATGTGAC 58.871 33.333 0.00 0.00 35.22 3.67
228 229 7.807977 AACTCAAACAGTGAAATATGTGACT 57.192 32.000 0.00 0.00 35.22 3.41
229 230 7.807977 ACTCAAACAGTGAAATATGTGACTT 57.192 32.000 0.00 0.00 35.22 3.01
230 231 7.865707 ACTCAAACAGTGAAATATGTGACTTC 58.134 34.615 0.00 0.00 35.22 3.01
231 232 7.498900 ACTCAAACAGTGAAATATGTGACTTCA 59.501 33.333 0.00 0.00 35.22 3.02
232 233 8.394971 TCAAACAGTGAAATATGTGACTTCAT 57.605 30.769 0.00 0.00 31.51 2.57
233 234 8.291740 TCAAACAGTGAAATATGTGACTTCATG 58.708 33.333 0.00 0.00 31.51 3.07
234 235 6.187125 ACAGTGAAATATGTGACTTCATGC 57.813 37.500 0.00 0.00 32.08 4.06
235 236 5.942236 ACAGTGAAATATGTGACTTCATGCT 59.058 36.000 0.00 0.00 32.08 3.79
236 237 6.093219 ACAGTGAAATATGTGACTTCATGCTC 59.907 38.462 0.00 0.00 32.08 4.26
237 238 6.093082 CAGTGAAATATGTGACTTCATGCTCA 59.907 38.462 0.00 0.00 32.08 4.26
238 239 6.656270 AGTGAAATATGTGACTTCATGCTCAA 59.344 34.615 0.00 0.00 32.08 3.02
239 240 6.965500 GTGAAATATGTGACTTCATGCTCAAG 59.035 38.462 0.00 0.00 32.08 3.02
240 241 5.496133 AATATGTGACTTCATGCTCAAGC 57.504 39.130 0.00 0.00 42.50 4.01
241 242 2.556144 TGTGACTTCATGCTCAAGCT 57.444 45.000 3.32 0.00 42.66 3.74
242 243 3.683365 TGTGACTTCATGCTCAAGCTA 57.317 42.857 3.32 0.00 42.66 3.32
243 244 4.006780 TGTGACTTCATGCTCAAGCTAA 57.993 40.909 3.32 0.00 42.66 3.09
244 245 4.388485 TGTGACTTCATGCTCAAGCTAAA 58.612 39.130 3.32 0.00 42.66 1.85
245 246 5.005740 TGTGACTTCATGCTCAAGCTAAAT 58.994 37.500 3.32 0.00 42.66 1.40
246 247 5.474532 TGTGACTTCATGCTCAAGCTAAATT 59.525 36.000 3.32 0.00 42.66 1.82
247 248 6.026513 GTGACTTCATGCTCAAGCTAAATTC 58.973 40.000 3.32 0.74 42.66 2.17
248 249 5.124457 TGACTTCATGCTCAAGCTAAATTCC 59.876 40.000 3.32 0.00 42.66 3.01
249 250 5.259632 ACTTCATGCTCAAGCTAAATTCCT 58.740 37.500 3.32 0.00 42.66 3.36
250 251 5.125097 ACTTCATGCTCAAGCTAAATTCCTG 59.875 40.000 3.32 0.00 42.66 3.86
251 252 4.847198 TCATGCTCAAGCTAAATTCCTGA 58.153 39.130 3.32 0.00 42.66 3.86
252 253 4.880120 TCATGCTCAAGCTAAATTCCTGAG 59.120 41.667 3.32 5.18 42.66 3.35
253 254 3.614092 TGCTCAAGCTAAATTCCTGAGG 58.386 45.455 10.50 0.00 42.66 3.86
254 255 2.948315 GCTCAAGCTAAATTCCTGAGGG 59.052 50.000 10.50 0.00 38.21 4.30
255 256 3.623453 GCTCAAGCTAAATTCCTGAGGGT 60.623 47.826 10.50 0.00 38.21 4.34
256 257 4.593956 CTCAAGCTAAATTCCTGAGGGTT 58.406 43.478 0.00 0.00 0.00 4.11
257 258 5.745227 CTCAAGCTAAATTCCTGAGGGTTA 58.255 41.667 0.00 0.00 0.00 2.85
258 259 6.134535 TCAAGCTAAATTCCTGAGGGTTAA 57.865 37.500 0.00 0.00 0.00 2.01
259 260 6.731467 TCAAGCTAAATTCCTGAGGGTTAAT 58.269 36.000 0.00 0.00 0.00 1.40
260 261 7.867921 TCAAGCTAAATTCCTGAGGGTTAATA 58.132 34.615 0.00 0.00 0.00 0.98
261 262 7.993183 TCAAGCTAAATTCCTGAGGGTTAATAG 59.007 37.037 0.00 0.00 0.00 1.73
262 263 6.842676 AGCTAAATTCCTGAGGGTTAATAGG 58.157 40.000 0.00 0.00 0.00 2.57
263 264 6.619852 AGCTAAATTCCTGAGGGTTAATAGGA 59.380 38.462 0.00 0.00 37.55 2.94
264 265 7.295911 AGCTAAATTCCTGAGGGTTAATAGGAT 59.704 37.037 0.00 0.00 38.98 3.24
265 266 7.945109 GCTAAATTCCTGAGGGTTAATAGGATT 59.055 37.037 0.00 0.00 38.98 3.01
268 269 9.642343 AAATTCCTGAGGGTTAATAGGATTAAC 57.358 33.333 11.86 11.86 38.98 2.01
269 270 7.758820 TTCCTGAGGGTTAATAGGATTAACA 57.241 36.000 18.81 3.37 38.98 2.41
270 271 7.947782 TCCTGAGGGTTAATAGGATTAACAT 57.052 36.000 18.81 10.07 36.79 2.71
271 272 7.974504 TCCTGAGGGTTAATAGGATTAACATC 58.025 38.462 18.81 16.14 36.79 3.06
272 273 7.794683 TCCTGAGGGTTAATAGGATTAACATCT 59.205 37.037 18.81 15.55 36.79 2.90
273 274 8.440771 CCTGAGGGTTAATAGGATTAACATCTT 58.559 37.037 18.81 4.42 36.79 2.40
286 287 9.213777 AGGATTAACATCTTACTATTGTCAGGA 57.786 33.333 0.00 0.00 0.00 3.86
287 288 9.832445 GGATTAACATCTTACTATTGTCAGGAA 57.168 33.333 0.00 0.00 0.00 3.36
291 292 8.918202 AACATCTTACTATTGTCAGGAAAACA 57.082 30.769 0.00 0.00 0.00 2.83
292 293 8.918202 ACATCTTACTATTGTCAGGAAAACAA 57.082 30.769 0.00 0.00 40.63 2.83
293 294 8.784043 ACATCTTACTATTGTCAGGAAAACAAC 58.216 33.333 0.00 0.00 39.29 3.32
294 295 8.783093 CATCTTACTATTGTCAGGAAAACAACA 58.217 33.333 0.00 0.00 39.29 3.33
295 296 8.740123 TCTTACTATTGTCAGGAAAACAACAA 57.260 30.769 0.00 0.00 39.29 2.83
296 297 8.836413 TCTTACTATTGTCAGGAAAACAACAAG 58.164 33.333 0.00 0.00 39.29 3.16
297 298 8.514330 TTACTATTGTCAGGAAAACAACAAGT 57.486 30.769 9.43 9.43 39.29 3.16
298 299 6.795399 ACTATTGTCAGGAAAACAACAAGTG 58.205 36.000 0.00 0.00 39.29 3.16
299 300 3.502191 TGTCAGGAAAACAACAAGTGC 57.498 42.857 0.00 0.00 0.00 4.40
300 301 2.822561 TGTCAGGAAAACAACAAGTGCA 59.177 40.909 0.00 0.00 0.00 4.57
301 302 3.119531 TGTCAGGAAAACAACAAGTGCAG 60.120 43.478 0.00 0.00 0.00 4.41
302 303 3.128589 GTCAGGAAAACAACAAGTGCAGA 59.871 43.478 0.00 0.00 0.00 4.26
303 304 3.128589 TCAGGAAAACAACAAGTGCAGAC 59.871 43.478 0.00 0.00 0.00 3.51
304 305 3.129287 CAGGAAAACAACAAGTGCAGACT 59.871 43.478 0.00 0.00 0.00 3.24
305 306 3.763897 AGGAAAACAACAAGTGCAGACTT 59.236 39.130 0.00 0.00 43.63 3.01
314 315 3.951979 AAGTGCAGACTTGAAAACGAG 57.048 42.857 0.00 0.00 41.12 4.18
315 316 2.213499 AGTGCAGACTTGAAAACGAGG 58.787 47.619 0.00 0.00 0.00 4.63
316 317 1.264288 GTGCAGACTTGAAAACGAGGG 59.736 52.381 0.00 0.00 0.00 4.30
317 318 1.140052 TGCAGACTTGAAAACGAGGGA 59.860 47.619 0.00 0.00 0.00 4.20
318 319 1.801178 GCAGACTTGAAAACGAGGGAG 59.199 52.381 0.00 0.00 0.00 4.30
319 320 2.548067 GCAGACTTGAAAACGAGGGAGA 60.548 50.000 0.00 0.00 0.00 3.71
320 321 3.728845 CAGACTTGAAAACGAGGGAGAA 58.271 45.455 0.00 0.00 0.00 2.87
321 322 4.319177 CAGACTTGAAAACGAGGGAGAAT 58.681 43.478 0.00 0.00 0.00 2.40
322 323 5.479306 CAGACTTGAAAACGAGGGAGAATA 58.521 41.667 0.00 0.00 0.00 1.75
323 324 5.578727 CAGACTTGAAAACGAGGGAGAATAG 59.421 44.000 0.00 0.00 0.00 1.73
324 325 5.246429 AGACTTGAAAACGAGGGAGAATAGT 59.754 40.000 0.00 0.00 0.00 2.12
325 326 6.436532 AGACTTGAAAACGAGGGAGAATAGTA 59.563 38.462 0.00 0.00 0.00 1.82
326 327 6.396450 ACTTGAAAACGAGGGAGAATAGTAC 58.604 40.000 0.00 0.00 0.00 2.73
327 328 5.334724 TGAAAACGAGGGAGAATAGTACC 57.665 43.478 0.00 0.00 0.00 3.34
328 329 4.161001 TGAAAACGAGGGAGAATAGTACCC 59.839 45.833 0.00 0.00 43.55 3.69
334 335 2.675583 GGGAGAATAGTACCCGGAAGT 58.324 52.381 0.73 0.00 34.03 3.01
335 336 3.036819 GGGAGAATAGTACCCGGAAGTT 58.963 50.000 0.73 0.00 34.03 2.66
336 337 4.218312 GGGAGAATAGTACCCGGAAGTTA 58.782 47.826 0.73 0.00 34.03 2.24
337 338 4.651045 GGGAGAATAGTACCCGGAAGTTAA 59.349 45.833 0.73 0.00 34.03 2.01
338 339 5.221402 GGGAGAATAGTACCCGGAAGTTAAG 60.221 48.000 0.73 0.00 34.03 1.85
339 340 5.273674 AGAATAGTACCCGGAAGTTAAGC 57.726 43.478 0.73 0.00 0.00 3.09
340 341 3.722728 ATAGTACCCGGAAGTTAAGCG 57.277 47.619 0.73 0.00 0.00 4.68
341 342 1.260544 AGTACCCGGAAGTTAAGCGT 58.739 50.000 0.73 0.00 0.00 5.07
342 343 1.067354 AGTACCCGGAAGTTAAGCGTG 60.067 52.381 0.73 0.00 0.00 5.34
343 344 0.390209 TACCCGGAAGTTAAGCGTGC 60.390 55.000 0.73 0.00 0.00 5.34
344 345 1.375523 CCCGGAAGTTAAGCGTGCT 60.376 57.895 0.73 0.00 0.00 4.40
345 346 1.359459 CCCGGAAGTTAAGCGTGCTC 61.359 60.000 0.73 0.00 0.00 4.26
346 347 0.669318 CCGGAAGTTAAGCGTGCTCA 60.669 55.000 0.00 0.00 0.00 4.26
347 348 0.716108 CGGAAGTTAAGCGTGCTCAG 59.284 55.000 0.00 0.00 0.00 3.35
348 349 1.079503 GGAAGTTAAGCGTGCTCAGG 58.920 55.000 0.00 0.00 0.00 3.86
349 350 0.444260 GAAGTTAAGCGTGCTCAGGC 59.556 55.000 6.46 6.46 42.05 4.85
355 356 4.385405 GCGTGCTCAGGCTGGAGT 62.385 66.667 15.73 0.00 38.98 3.85
356 357 3.006756 GCGTGCTCAGGCTGGAGTA 62.007 63.158 15.73 7.59 38.98 2.59
357 358 1.140589 CGTGCTCAGGCTGGAGTAG 59.859 63.158 15.73 5.57 39.59 2.57
358 359 1.599606 CGTGCTCAGGCTGGAGTAGT 61.600 60.000 15.73 0.00 39.59 2.73
359 360 0.108424 GTGCTCAGGCTGGAGTAGTG 60.108 60.000 15.73 0.00 39.59 2.74
360 361 0.251787 TGCTCAGGCTGGAGTAGTGA 60.252 55.000 15.73 0.00 39.59 3.41
361 362 0.459489 GCTCAGGCTGGAGTAGTGAG 59.541 60.000 15.73 3.11 38.14 3.51
362 363 1.957591 GCTCAGGCTGGAGTAGTGAGA 60.958 57.143 15.73 0.00 37.43 3.27
363 364 2.665165 CTCAGGCTGGAGTAGTGAGAT 58.335 52.381 15.73 0.00 37.43 2.75
364 365 2.361757 CTCAGGCTGGAGTAGTGAGATG 59.638 54.545 15.73 0.00 37.43 2.90
365 366 2.024941 TCAGGCTGGAGTAGTGAGATGA 60.025 50.000 15.73 0.00 0.00 2.92
366 367 2.964464 CAGGCTGGAGTAGTGAGATGAT 59.036 50.000 6.61 0.00 0.00 2.45
367 368 2.964464 AGGCTGGAGTAGTGAGATGATG 59.036 50.000 0.00 0.00 0.00 3.07
368 369 2.036992 GGCTGGAGTAGTGAGATGATGG 59.963 54.545 0.00 0.00 0.00 3.51
369 370 2.036992 GCTGGAGTAGTGAGATGATGGG 59.963 54.545 0.00 0.00 0.00 4.00
370 371 3.303938 CTGGAGTAGTGAGATGATGGGT 58.696 50.000 0.00 0.00 0.00 4.51
371 372 3.033909 TGGAGTAGTGAGATGATGGGTG 58.966 50.000 0.00 0.00 0.00 4.61
372 373 3.300388 GGAGTAGTGAGATGATGGGTGA 58.700 50.000 0.00 0.00 0.00 4.02
373 374 3.068873 GGAGTAGTGAGATGATGGGTGAC 59.931 52.174 0.00 0.00 0.00 3.67
386 387 2.460757 GGGTGACCGTGCTTTAGTAA 57.539 50.000 0.00 0.00 43.64 2.24
387 388 2.071540 GGGTGACCGTGCTTTAGTAAC 58.928 52.381 0.00 0.00 43.64 2.50
388 389 1.723003 GGTGACCGTGCTTTAGTAACG 59.277 52.381 0.00 0.00 37.07 3.18
389 390 2.607771 GGTGACCGTGCTTTAGTAACGA 60.608 50.000 0.00 0.00 39.64 3.85
390 391 2.406357 GTGACCGTGCTTTAGTAACGAC 59.594 50.000 0.00 4.27 39.64 4.34
391 392 1.988467 GACCGTGCTTTAGTAACGACC 59.012 52.381 0.00 0.00 39.64 4.79
392 393 1.615392 ACCGTGCTTTAGTAACGACCT 59.385 47.619 0.00 0.00 39.64 3.85
393 394 2.036346 ACCGTGCTTTAGTAACGACCTT 59.964 45.455 0.00 0.00 39.64 3.50
394 395 3.062042 CCGTGCTTTAGTAACGACCTTT 58.938 45.455 0.00 0.00 39.64 3.11
395 396 4.236935 CCGTGCTTTAGTAACGACCTTTA 58.763 43.478 0.00 0.00 39.64 1.85
396 397 4.325472 CCGTGCTTTAGTAACGACCTTTAG 59.675 45.833 0.00 0.00 39.64 1.85
397 398 4.919754 CGTGCTTTAGTAACGACCTTTAGT 59.080 41.667 0.00 0.00 39.64 2.24
398 399 5.060200 CGTGCTTTAGTAACGACCTTTAGTC 59.940 44.000 0.00 0.00 42.54 2.59
399 400 5.347093 GTGCTTTAGTAACGACCTTTAGTCC 59.653 44.000 0.00 0.00 43.08 3.85
400 401 5.244626 TGCTTTAGTAACGACCTTTAGTCCT 59.755 40.000 0.00 0.00 43.08 3.85
401 402 5.575995 GCTTTAGTAACGACCTTTAGTCCTG 59.424 44.000 0.00 0.00 43.08 3.86
402 403 5.649782 TTAGTAACGACCTTTAGTCCTGG 57.350 43.478 0.00 0.00 43.08 4.45
403 404 2.233186 AGTAACGACCTTTAGTCCTGGC 59.767 50.000 0.00 0.00 43.08 4.85
404 405 0.323957 AACGACCTTTAGTCCTGGCC 59.676 55.000 0.00 0.00 43.08 5.36
405 406 1.221021 CGACCTTTAGTCCTGGCCC 59.779 63.158 0.00 0.00 43.08 5.80
406 407 1.265454 CGACCTTTAGTCCTGGCCCT 61.265 60.000 0.00 0.00 43.08 5.19
407 408 0.992695 GACCTTTAGTCCTGGCCCTT 59.007 55.000 0.00 0.00 39.84 3.95
408 409 1.354705 GACCTTTAGTCCTGGCCCTTT 59.645 52.381 0.00 0.00 39.84 3.11
409 410 1.787058 ACCTTTAGTCCTGGCCCTTTT 59.213 47.619 0.00 0.00 0.00 2.27
410 411 2.179204 ACCTTTAGTCCTGGCCCTTTTT 59.821 45.455 0.00 0.00 0.00 1.94
411 412 2.826128 CCTTTAGTCCTGGCCCTTTTTC 59.174 50.000 0.00 0.00 0.00 2.29
412 413 3.500471 CCTTTAGTCCTGGCCCTTTTTCT 60.500 47.826 0.00 0.00 0.00 2.52
413 414 4.263771 CCTTTAGTCCTGGCCCTTTTTCTA 60.264 45.833 0.00 0.00 0.00 2.10
414 415 2.881111 AGTCCTGGCCCTTTTTCTAC 57.119 50.000 0.00 0.00 0.00 2.59
415 416 2.349445 AGTCCTGGCCCTTTTTCTACT 58.651 47.619 0.00 0.00 0.00 2.57
416 417 3.527937 AGTCCTGGCCCTTTTTCTACTA 58.472 45.455 0.00 0.00 0.00 1.82
417 418 3.519913 AGTCCTGGCCCTTTTTCTACTAG 59.480 47.826 0.00 0.00 0.00 2.57
418 419 3.263681 GTCCTGGCCCTTTTTCTACTAGT 59.736 47.826 0.00 0.00 0.00 2.57
419 420 3.263425 TCCTGGCCCTTTTTCTACTAGTG 59.737 47.826 5.39 0.00 0.00 2.74
420 421 3.009143 CCTGGCCCTTTTTCTACTAGTGT 59.991 47.826 5.39 0.00 0.00 3.55
421 422 4.003648 CTGGCCCTTTTTCTACTAGTGTG 58.996 47.826 5.39 0.00 0.00 3.82
422 423 3.393278 TGGCCCTTTTTCTACTAGTGTGT 59.607 43.478 5.39 0.00 0.00 3.72
423 424 4.001652 GGCCCTTTTTCTACTAGTGTGTC 58.998 47.826 5.39 0.00 0.00 3.67
424 425 4.262938 GGCCCTTTTTCTACTAGTGTGTCT 60.263 45.833 5.39 0.00 0.00 3.41
425 426 4.930405 GCCCTTTTTCTACTAGTGTGTCTC 59.070 45.833 5.39 0.00 0.00 3.36
426 427 5.510861 GCCCTTTTTCTACTAGTGTGTCTCA 60.511 44.000 5.39 0.00 0.00 3.27
427 428 6.159988 CCCTTTTTCTACTAGTGTGTCTCAG 58.840 44.000 5.39 0.00 0.00 3.35
428 429 6.239345 CCCTTTTTCTACTAGTGTGTCTCAGT 60.239 42.308 5.39 0.00 0.00 3.41
429 430 6.864165 CCTTTTTCTACTAGTGTGTCTCAGTC 59.136 42.308 5.39 0.00 0.00 3.51
430 431 6.954487 TTTTCTACTAGTGTGTCTCAGTCA 57.046 37.500 5.39 0.00 0.00 3.41
431 432 7.526142 TTTTCTACTAGTGTGTCTCAGTCAT 57.474 36.000 5.39 0.00 0.00 3.06
432 433 8.631480 TTTTCTACTAGTGTGTCTCAGTCATA 57.369 34.615 5.39 0.00 0.00 2.15
433 434 7.851387 TTCTACTAGTGTGTCTCAGTCATAG 57.149 40.000 5.39 0.00 0.00 2.23
434 435 6.350103 TCTACTAGTGTGTCTCAGTCATAGG 58.650 44.000 5.39 0.00 0.00 2.57
435 436 4.924625 ACTAGTGTGTCTCAGTCATAGGT 58.075 43.478 0.00 0.00 0.00 3.08
436 437 4.944930 ACTAGTGTGTCTCAGTCATAGGTC 59.055 45.833 0.00 0.00 0.00 3.85
440 441 1.472878 TGTCTCAGTCATAGGTCGTGC 59.527 52.381 0.00 0.00 0.00 5.34
493 497 1.143073 TGCTACCTCGAGGAGCTCATA 59.857 52.381 35.02 22.86 38.39 2.15
539 543 2.655090 TGCCTCTGTTGTGGAATGAA 57.345 45.000 0.00 0.00 0.00 2.57
547 551 3.599343 TGTTGTGGAATGAAGATCTCCG 58.401 45.455 0.00 0.00 31.37 4.63
550 554 2.093500 TGTGGAATGAAGATCTCCGTGG 60.093 50.000 0.00 0.00 31.37 4.94
555 559 4.514577 AAGATCTCCGTGGCCGCG 62.515 66.667 31.48 31.48 0.00 6.46
578 593 2.038387 ATCCGTGTCAAATGGGTAGC 57.962 50.000 0.00 0.00 35.39 3.58
579 594 0.687920 TCCGTGTCAAATGGGTAGCA 59.312 50.000 0.00 0.00 35.39 3.49
581 596 0.802494 CGTGTCAAATGGGTAGCACC 59.198 55.000 0.00 0.00 37.60 5.01
582 597 0.802494 GTGTCAAATGGGTAGCACCG 59.198 55.000 0.00 0.00 39.83 4.94
583 598 0.398696 TGTCAAATGGGTAGCACCGT 59.601 50.000 0.00 0.00 39.83 4.83
584 599 1.202830 TGTCAAATGGGTAGCACCGTT 60.203 47.619 0.00 0.00 39.83 4.44
585 600 1.199097 GTCAAATGGGTAGCACCGTTG 59.801 52.381 0.00 5.11 39.83 4.10
586 601 0.525761 CAAATGGGTAGCACCGTTGG 59.474 55.000 0.00 0.00 39.83 3.77
587 602 0.610785 AAATGGGTAGCACCGTTGGG 60.611 55.000 0.00 0.00 39.83 4.12
615 630 1.172180 CCGGACACACATGTTTGCCT 61.172 55.000 11.90 0.00 39.95 4.75
677 692 1.226746 GTGTCCGTTTGGGTCTCTTG 58.773 55.000 0.00 0.00 37.00 3.02
678 693 0.107831 TGTCCGTTTGGGTCTCTTGG 59.892 55.000 0.00 0.00 37.00 3.61
679 694 0.108019 GTCCGTTTGGGTCTCTTGGT 59.892 55.000 0.00 0.00 37.00 3.67
680 695 0.841289 TCCGTTTGGGTCTCTTGGTT 59.159 50.000 0.00 0.00 37.00 3.67
681 696 0.951558 CCGTTTGGGTCTCTTGGTTG 59.048 55.000 0.00 0.00 0.00 3.77
718 733 0.250166 CGTTTGGGTCGTTCCTCCTT 60.250 55.000 0.30 0.00 36.25 3.36
719 734 1.001181 CGTTTGGGTCGTTCCTCCTTA 59.999 52.381 0.30 0.00 36.25 2.69
906 936 2.536329 CGCTTCATTCTGTTGATCAGCG 60.536 50.000 5.02 4.79 42.83 5.18
924 954 2.449548 GTGATCACCACACGAGCAG 58.550 57.895 15.31 0.00 45.03 4.24
932 995 1.154131 CACACGAGCAGAGACGGAG 60.154 63.158 0.00 0.00 0.00 4.63
953 1016 3.193691 AGTTCTCATTGATCGACTCCGTT 59.806 43.478 0.00 0.00 37.05 4.44
1303 1366 3.628646 CTGCCCCTCCTCCCGTTTG 62.629 68.421 0.00 0.00 0.00 2.93
1341 1404 2.512515 ATCAAGCTCCGCGAAGGC 60.513 61.111 8.23 8.89 40.77 4.35
1989 2052 3.798954 GATTCAGGAGGCCGCCGAG 62.799 68.421 20.86 16.75 0.00 4.63
2100 2166 2.760374 CTGTCAGGATATTTCGGGCTC 58.240 52.381 0.00 0.00 0.00 4.70
2109 2175 5.367060 AGGATATTTCGGGCTCTTCTTACTT 59.633 40.000 0.00 0.00 0.00 2.24
2110 2176 6.056236 GGATATTTCGGGCTCTTCTTACTTT 58.944 40.000 0.00 0.00 0.00 2.66
2111 2177 6.542735 GGATATTTCGGGCTCTTCTTACTTTT 59.457 38.462 0.00 0.00 0.00 2.27
2132 2198 1.834188 TTTTTGAGGATCCTTCGGGC 58.166 50.000 17.42 2.73 34.44 6.13
2133 2199 0.991920 TTTTGAGGATCCTTCGGGCT 59.008 50.000 17.42 0.00 34.44 5.19
2134 2200 0.541863 TTTGAGGATCCTTCGGGCTC 59.458 55.000 17.42 1.41 34.44 4.70
2135 2201 0.325671 TTGAGGATCCTTCGGGCTCT 60.326 55.000 17.42 0.00 31.41 4.09
2136 2202 0.325671 TGAGGATCCTTCGGGCTCTT 60.326 55.000 17.42 0.00 31.41 2.85
2137 2203 0.391228 GAGGATCCTTCGGGCTCTTC 59.609 60.000 17.42 0.00 31.12 2.87
2138 2204 0.031616 AGGATCCTTCGGGCTCTTCT 60.032 55.000 9.02 0.00 31.41 2.85
2139 2205 0.833949 GGATCCTTCGGGCTCTTCTT 59.166 55.000 3.84 0.00 31.41 2.52
2140 2206 2.040178 GGATCCTTCGGGCTCTTCTTA 58.960 52.381 3.84 0.00 31.41 2.10
2141 2207 2.224090 GGATCCTTCGGGCTCTTCTTAC 60.224 54.545 3.84 0.00 31.41 2.34
2142 2208 2.233305 TCCTTCGGGCTCTTCTTACT 57.767 50.000 0.00 0.00 34.44 2.24
2143 2209 3.377253 TCCTTCGGGCTCTTCTTACTA 57.623 47.619 0.00 0.00 34.44 1.82
2144 2210 3.288964 TCCTTCGGGCTCTTCTTACTAG 58.711 50.000 0.00 0.00 34.44 2.57
2145 2211 2.362717 CCTTCGGGCTCTTCTTACTAGG 59.637 54.545 0.00 0.00 0.00 3.02
2146 2212 2.822707 TCGGGCTCTTCTTACTAGGT 57.177 50.000 0.00 0.00 0.00 3.08
2147 2213 3.939740 TCGGGCTCTTCTTACTAGGTA 57.060 47.619 0.00 0.00 0.00 3.08
2148 2214 3.549794 TCGGGCTCTTCTTACTAGGTAC 58.450 50.000 0.00 0.00 0.00 3.34
2149 2215 3.201708 TCGGGCTCTTCTTACTAGGTACT 59.798 47.826 0.00 0.00 46.37 2.73
2150 2216 4.410228 TCGGGCTCTTCTTACTAGGTACTA 59.590 45.833 0.00 0.00 41.75 1.82
2151 2217 5.072872 TCGGGCTCTTCTTACTAGGTACTAT 59.927 44.000 0.00 0.00 41.70 2.12
2165 2231 2.094649 GGTACTATATCTGTGGCCGCTC 60.095 54.545 18.96 1.28 0.00 5.03
2166 2232 0.969894 ACTATATCTGTGGCCGCTCC 59.030 55.000 18.96 0.00 0.00 4.70
2167 2233 0.247736 CTATATCTGTGGCCGCTCCC 59.752 60.000 18.96 0.00 0.00 4.30
2170 2236 2.306715 TATCTGTGGCCGCTCCCCTA 62.307 60.000 18.96 0.00 0.00 3.53
2171 2237 3.854669 CTGTGGCCGCTCCCCTAG 61.855 72.222 18.96 0.69 0.00 3.02
2219 2285 6.092807 CCTGATTCTACTTCTACCAAACAAGC 59.907 42.308 0.00 0.00 0.00 4.01
2245 2311 9.893305 CTAAGGAAAGGTTTAGTATTGTTGTTG 57.107 33.333 0.00 0.00 0.00 3.33
2280 2346 1.056700 ACATTAGGGAGATGGGCGCT 61.057 55.000 7.64 0.00 0.00 5.92
2721 2787 4.410400 CTTGTCCCCTCCGGTGGC 62.410 72.222 17.44 4.40 0.00 5.01
2872 2938 3.482783 GTTGCAGCTCTCGACGGC 61.483 66.667 0.00 0.00 0.00 5.68
2908 2974 1.288127 GTTGTAGCTCCGTCACCGT 59.712 57.895 0.00 0.00 0.00 4.83
2968 3034 1.237285 ACGGCTGCCAGTCAATCAAC 61.237 55.000 20.29 0.00 0.00 3.18
3002 3068 3.500680 GGATGTAGCAAAAACTTCACCGA 59.499 43.478 0.00 0.00 0.00 4.69
3050 3116 1.729149 GCAAAAATCTTCTCACCGCCG 60.729 52.381 0.00 0.00 0.00 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.974645 TTGACCACAGTAGACCAGATTT 57.025 40.909 0.00 0.00 0.00 2.17
1 2 4.348168 AGTTTGACCACAGTAGACCAGATT 59.652 41.667 0.00 0.00 0.00 2.40
2 3 3.904339 AGTTTGACCACAGTAGACCAGAT 59.096 43.478 0.00 0.00 0.00 2.90
3 4 3.305720 AGTTTGACCACAGTAGACCAGA 58.694 45.455 0.00 0.00 0.00 3.86
4 5 3.753294 AGTTTGACCACAGTAGACCAG 57.247 47.619 0.00 0.00 0.00 4.00
5 6 4.020573 CCATAGTTTGACCACAGTAGACCA 60.021 45.833 0.00 0.00 0.00 4.02
6 7 4.020485 ACCATAGTTTGACCACAGTAGACC 60.020 45.833 0.00 0.00 0.00 3.85
7 8 5.148651 ACCATAGTTTGACCACAGTAGAC 57.851 43.478 0.00 0.00 0.00 2.59
8 9 4.836175 TGACCATAGTTTGACCACAGTAGA 59.164 41.667 0.00 0.00 0.00 2.59
9 10 5.147330 TGACCATAGTTTGACCACAGTAG 57.853 43.478 0.00 0.00 0.00 2.57
10 11 5.554437 TTGACCATAGTTTGACCACAGTA 57.446 39.130 0.00 0.00 0.00 2.74
11 12 4.431416 TTGACCATAGTTTGACCACAGT 57.569 40.909 0.00 0.00 0.00 3.55
12 13 4.821805 AGTTTGACCATAGTTTGACCACAG 59.178 41.667 0.00 0.00 0.00 3.66
13 14 4.787551 AGTTTGACCATAGTTTGACCACA 58.212 39.130 0.00 0.00 0.00 4.17
14 15 5.995897 AGTAGTTTGACCATAGTTTGACCAC 59.004 40.000 0.00 0.00 0.00 4.16
15 16 6.182507 AGTAGTTTGACCATAGTTTGACCA 57.817 37.500 0.00 0.00 0.00 4.02
16 17 8.788325 ATAAGTAGTTTGACCATAGTTTGACC 57.212 34.615 0.00 0.00 0.00 4.02
80 81 8.046107 AGACCAGATTTGACCAAAATTCAAAAA 58.954 29.630 1.90 0.00 44.14 1.94
81 82 7.563906 AGACCAGATTTGACCAAAATTCAAAA 58.436 30.769 1.90 0.00 44.14 2.44
82 83 7.123355 AGACCAGATTTGACCAAAATTCAAA 57.877 32.000 0.00 0.31 44.84 2.69
83 84 6.729690 AGACCAGATTTGACCAAAATTCAA 57.270 33.333 0.00 0.00 38.64 2.69
84 85 7.505585 AGTTAGACCAGATTTGACCAAAATTCA 59.494 33.333 0.00 0.00 38.64 2.57
85 86 7.809806 CAGTTAGACCAGATTTGACCAAAATTC 59.190 37.037 0.00 0.00 38.64 2.17
86 87 7.287696 ACAGTTAGACCAGATTTGACCAAAATT 59.712 33.333 0.00 0.00 38.64 1.82
87 88 6.777580 ACAGTTAGACCAGATTTGACCAAAAT 59.222 34.615 0.00 0.00 41.33 1.82
88 89 6.039270 CACAGTTAGACCAGATTTGACCAAAA 59.961 38.462 0.00 0.00 33.56 2.44
89 90 5.530915 CACAGTTAGACCAGATTTGACCAAA 59.469 40.000 0.00 0.00 34.46 3.28
90 91 5.063204 CACAGTTAGACCAGATTTGACCAA 58.937 41.667 0.00 0.00 0.00 3.67
91 92 4.504864 CCACAGTTAGACCAGATTTGACCA 60.505 45.833 0.00 0.00 0.00 4.02
92 93 4.003648 CCACAGTTAGACCAGATTTGACC 58.996 47.826 0.00 0.00 0.00 4.02
93 94 4.642429 ACCACAGTTAGACCAGATTTGAC 58.358 43.478 0.00 0.00 0.00 3.18
94 95 4.346709 TGACCACAGTTAGACCAGATTTGA 59.653 41.667 0.00 0.00 0.00 2.69
95 96 4.641396 TGACCACAGTTAGACCAGATTTG 58.359 43.478 0.00 0.00 0.00 2.32
96 97 4.974645 TGACCACAGTTAGACCAGATTT 57.025 40.909 0.00 0.00 0.00 2.17
97 98 4.974645 TTGACCACAGTTAGACCAGATT 57.025 40.909 0.00 0.00 0.00 2.40
98 99 4.348168 AGTTTGACCACAGTTAGACCAGAT 59.652 41.667 0.00 0.00 0.00 2.90
99 100 3.709653 AGTTTGACCACAGTTAGACCAGA 59.290 43.478 0.00 0.00 0.00 3.86
100 101 3.809832 CAGTTTGACCACAGTTAGACCAG 59.190 47.826 0.00 0.00 0.00 4.00
101 102 3.199071 ACAGTTTGACCACAGTTAGACCA 59.801 43.478 0.00 0.00 0.00 4.02
102 103 3.560068 CACAGTTTGACCACAGTTAGACC 59.440 47.826 0.00 0.00 0.00 3.85
103 104 3.560068 CCACAGTTTGACCACAGTTAGAC 59.440 47.826 0.00 0.00 0.00 2.59
104 105 3.199071 ACCACAGTTTGACCACAGTTAGA 59.801 43.478 0.00 0.00 0.00 2.10
105 106 3.541632 ACCACAGTTTGACCACAGTTAG 58.458 45.455 0.00 0.00 0.00 2.34
106 107 3.637911 ACCACAGTTTGACCACAGTTA 57.362 42.857 0.00 0.00 0.00 2.24
107 108 2.507407 ACCACAGTTTGACCACAGTT 57.493 45.000 0.00 0.00 0.00 3.16
108 109 2.507407 AACCACAGTTTGACCACAGT 57.493 45.000 0.00 0.00 29.61 3.55
109 110 4.398044 AGTTTAACCACAGTTTGACCACAG 59.602 41.667 0.00 0.00 37.42 3.66
110 111 4.337145 AGTTTAACCACAGTTTGACCACA 58.663 39.130 0.00 0.00 37.42 4.17
111 112 4.976224 AGTTTAACCACAGTTTGACCAC 57.024 40.909 0.00 0.00 37.42 4.16
112 113 5.533154 CCATAGTTTAACCACAGTTTGACCA 59.467 40.000 0.00 0.00 37.42 4.02
113 114 5.533528 ACCATAGTTTAACCACAGTTTGACC 59.466 40.000 0.00 0.00 37.42 4.02
114 115 6.261381 TGACCATAGTTTAACCACAGTTTGAC 59.739 38.462 0.00 0.00 37.42 3.18
115 116 6.358178 TGACCATAGTTTAACCACAGTTTGA 58.642 36.000 0.00 0.00 37.42 2.69
116 117 6.627395 TGACCATAGTTTAACCACAGTTTG 57.373 37.500 0.00 0.00 37.42 2.93
117 118 7.340999 AGTTTGACCATAGTTTAACCACAGTTT 59.659 33.333 0.00 0.00 37.42 2.66
118 119 6.831868 AGTTTGACCATAGTTTAACCACAGTT 59.168 34.615 0.00 0.00 40.15 3.16
119 120 6.362248 AGTTTGACCATAGTTTAACCACAGT 58.638 36.000 0.00 0.00 0.00 3.55
120 121 6.877611 AGTTTGACCATAGTTTAACCACAG 57.122 37.500 0.00 0.00 0.00 3.66
121 122 7.511268 AGTAGTTTGACCATAGTTTAACCACA 58.489 34.615 0.00 0.00 0.00 4.17
122 123 7.974482 AGTAGTTTGACCATAGTTTAACCAC 57.026 36.000 0.00 0.00 0.00 4.16
189 190 8.739972 ACTGTTTGAGTTTGAAACTATTGTTCT 58.260 29.630 11.01 0.00 43.03 3.01
190 191 8.798153 CACTGTTTGAGTTTGAAACTATTGTTC 58.202 33.333 11.01 0.00 43.03 3.18
191 192 8.519526 TCACTGTTTGAGTTTGAAACTATTGTT 58.480 29.630 11.01 0.00 43.03 2.83
192 193 8.050778 TCACTGTTTGAGTTTGAAACTATTGT 57.949 30.769 11.01 2.32 43.03 2.71
193 194 8.909708 TTCACTGTTTGAGTTTGAAACTATTG 57.090 30.769 11.01 0.13 43.03 1.90
197 198 9.520204 CATATTTCACTGTTTGAGTTTGAAACT 57.480 29.630 10.82 10.82 46.38 2.66
198 199 9.301153 ACATATTTCACTGTTTGAGTTTGAAAC 57.699 29.630 0.00 0.00 32.33 2.78
199 200 9.299963 CACATATTTCACTGTTTGAGTTTGAAA 57.700 29.630 0.00 0.00 34.94 2.69
200 201 8.681806 TCACATATTTCACTGTTTGAGTTTGAA 58.318 29.630 0.00 0.00 34.94 2.69
201 202 8.128582 GTCACATATTTCACTGTTTGAGTTTGA 58.871 33.333 0.00 0.00 34.94 2.69
202 203 8.131100 AGTCACATATTTCACTGTTTGAGTTTG 58.869 33.333 0.00 0.00 34.94 2.93
203 204 8.225603 AGTCACATATTTCACTGTTTGAGTTT 57.774 30.769 0.00 0.00 34.94 2.66
204 205 7.807977 AGTCACATATTTCACTGTTTGAGTT 57.192 32.000 0.00 0.00 34.94 3.01
205 206 7.498900 TGAAGTCACATATTTCACTGTTTGAGT 59.501 33.333 0.00 0.00 34.94 3.41
206 207 7.864686 TGAAGTCACATATTTCACTGTTTGAG 58.135 34.615 0.00 0.00 34.94 3.02
207 208 7.800155 TGAAGTCACATATTTCACTGTTTGA 57.200 32.000 0.00 0.00 29.59 2.69
208 209 7.061441 GCATGAAGTCACATATTTCACTGTTTG 59.939 37.037 0.00 0.00 36.73 2.93
209 210 7.040201 AGCATGAAGTCACATATTTCACTGTTT 60.040 33.333 0.00 0.00 36.73 2.83
210 211 6.432162 AGCATGAAGTCACATATTTCACTGTT 59.568 34.615 0.00 0.00 36.73 3.16
211 212 5.942236 AGCATGAAGTCACATATTTCACTGT 59.058 36.000 0.00 0.00 36.73 3.55
212 213 6.093082 TGAGCATGAAGTCACATATTTCACTG 59.907 38.462 0.00 0.00 36.73 3.66
213 214 6.175471 TGAGCATGAAGTCACATATTTCACT 58.825 36.000 0.00 0.00 36.73 3.41
214 215 6.426980 TGAGCATGAAGTCACATATTTCAC 57.573 37.500 0.00 0.00 36.73 3.18
215 216 6.403964 GCTTGAGCATGAAGTCACATATTTCA 60.404 38.462 0.00 0.00 38.10 2.69
216 217 5.970023 GCTTGAGCATGAAGTCACATATTTC 59.030 40.000 0.00 0.00 41.59 2.17
217 218 5.651139 AGCTTGAGCATGAAGTCACATATTT 59.349 36.000 5.70 0.00 45.16 1.40
218 219 5.191426 AGCTTGAGCATGAAGTCACATATT 58.809 37.500 5.70 0.00 45.16 1.28
219 220 4.778579 AGCTTGAGCATGAAGTCACATAT 58.221 39.130 5.70 0.00 45.16 1.78
220 221 4.212143 AGCTTGAGCATGAAGTCACATA 57.788 40.909 5.70 0.00 45.16 2.29
221 222 3.069079 AGCTTGAGCATGAAGTCACAT 57.931 42.857 5.70 0.00 45.16 3.21
222 223 2.556144 AGCTTGAGCATGAAGTCACA 57.444 45.000 5.70 0.00 45.16 3.58
223 224 5.557891 ATTTAGCTTGAGCATGAAGTCAC 57.442 39.130 5.70 0.00 45.16 3.67
224 225 5.124457 GGAATTTAGCTTGAGCATGAAGTCA 59.876 40.000 5.70 0.00 45.16 3.41
225 226 5.356470 AGGAATTTAGCTTGAGCATGAAGTC 59.644 40.000 5.70 5.57 45.16 3.01
226 227 5.125097 CAGGAATTTAGCTTGAGCATGAAGT 59.875 40.000 5.70 0.00 45.16 3.01
227 228 5.356190 TCAGGAATTTAGCTTGAGCATGAAG 59.644 40.000 5.70 0.00 45.16 3.02
228 229 5.255687 TCAGGAATTTAGCTTGAGCATGAA 58.744 37.500 5.70 0.00 45.16 2.57
229 230 4.847198 TCAGGAATTTAGCTTGAGCATGA 58.153 39.130 5.70 0.00 45.16 3.07
230 231 4.036498 CCTCAGGAATTTAGCTTGAGCATG 59.964 45.833 5.70 0.00 45.16 4.06
231 232 4.205587 CCTCAGGAATTTAGCTTGAGCAT 58.794 43.478 5.70 0.00 45.16 3.79
232 233 3.614092 CCTCAGGAATTTAGCTTGAGCA 58.386 45.455 5.70 0.00 45.16 4.26
233 234 2.948315 CCCTCAGGAATTTAGCTTGAGC 59.052 50.000 0.00 0.00 37.93 4.26
234 235 4.227864 ACCCTCAGGAATTTAGCTTGAG 57.772 45.455 0.00 0.00 38.69 3.02
235 236 4.657814 AACCCTCAGGAATTTAGCTTGA 57.342 40.909 0.00 0.00 36.73 3.02
236 237 7.229506 CCTATTAACCCTCAGGAATTTAGCTTG 59.770 40.741 0.00 0.00 36.73 4.01
237 238 7.128883 TCCTATTAACCCTCAGGAATTTAGCTT 59.871 37.037 0.00 0.00 34.25 3.74
238 239 6.619852 TCCTATTAACCCTCAGGAATTTAGCT 59.380 38.462 0.00 0.00 34.25 3.32
239 240 6.838382 TCCTATTAACCCTCAGGAATTTAGC 58.162 40.000 0.00 0.00 34.25 3.09
242 243 9.642343 GTTAATCCTATTAACCCTCAGGAATTT 57.358 33.333 10.18 0.00 40.48 1.82
243 244 8.787818 TGTTAATCCTATTAACCCTCAGGAATT 58.212 33.333 16.09 0.00 40.48 2.17
244 245 8.344939 TGTTAATCCTATTAACCCTCAGGAAT 57.655 34.615 16.09 0.00 40.48 3.01
245 246 7.758820 TGTTAATCCTATTAACCCTCAGGAA 57.241 36.000 16.09 0.00 40.48 3.36
246 247 7.794683 AGATGTTAATCCTATTAACCCTCAGGA 59.205 37.037 16.09 0.00 41.31 3.86
247 248 7.978925 AGATGTTAATCCTATTAACCCTCAGG 58.021 38.462 16.09 0.00 34.81 3.86
260 261 9.213777 TCCTGACAATAGTAAGATGTTAATCCT 57.786 33.333 0.00 0.00 32.77 3.24
261 262 9.832445 TTCCTGACAATAGTAAGATGTTAATCC 57.168 33.333 0.00 0.00 32.77 3.01
266 267 8.918202 TGTTTTCCTGACAATAGTAAGATGTT 57.082 30.769 0.00 0.00 0.00 2.71
267 268 8.784043 GTTGTTTTCCTGACAATAGTAAGATGT 58.216 33.333 0.00 0.00 39.03 3.06
268 269 8.783093 TGTTGTTTTCCTGACAATAGTAAGATG 58.217 33.333 0.00 0.00 39.03 2.90
269 270 8.918202 TGTTGTTTTCCTGACAATAGTAAGAT 57.082 30.769 0.00 0.00 39.03 2.40
270 271 8.740123 TTGTTGTTTTCCTGACAATAGTAAGA 57.260 30.769 0.00 0.00 39.03 2.10
271 272 8.621286 ACTTGTTGTTTTCCTGACAATAGTAAG 58.379 33.333 0.00 0.00 39.03 2.34
272 273 8.402472 CACTTGTTGTTTTCCTGACAATAGTAA 58.598 33.333 0.00 0.00 39.03 2.24
273 274 7.468084 GCACTTGTTGTTTTCCTGACAATAGTA 60.468 37.037 0.00 0.00 39.03 1.82
274 275 6.680378 GCACTTGTTGTTTTCCTGACAATAGT 60.680 38.462 0.00 0.00 39.03 2.12
275 276 5.687285 GCACTTGTTGTTTTCCTGACAATAG 59.313 40.000 0.00 0.00 39.03 1.73
276 277 5.126222 TGCACTTGTTGTTTTCCTGACAATA 59.874 36.000 0.00 0.00 39.03 1.90
277 278 4.081752 TGCACTTGTTGTTTTCCTGACAAT 60.082 37.500 0.00 0.00 39.03 2.71
278 279 3.256879 TGCACTTGTTGTTTTCCTGACAA 59.743 39.130 0.00 0.00 34.83 3.18
279 280 2.822561 TGCACTTGTTGTTTTCCTGACA 59.177 40.909 0.00 0.00 0.00 3.58
280 281 3.128589 TCTGCACTTGTTGTTTTCCTGAC 59.871 43.478 0.00 0.00 0.00 3.51
281 282 3.128589 GTCTGCACTTGTTGTTTTCCTGA 59.871 43.478 0.00 0.00 0.00 3.86
282 283 3.129287 AGTCTGCACTTGTTGTTTTCCTG 59.871 43.478 0.00 0.00 0.00 3.86
283 284 3.356290 AGTCTGCACTTGTTGTTTTCCT 58.644 40.909 0.00 0.00 0.00 3.36
284 285 3.782889 AGTCTGCACTTGTTGTTTTCC 57.217 42.857 0.00 0.00 0.00 3.13
294 295 2.614057 CCTCGTTTTCAAGTCTGCACTT 59.386 45.455 0.00 0.00 44.26 3.16
295 296 2.213499 CCTCGTTTTCAAGTCTGCACT 58.787 47.619 0.00 0.00 0.00 4.40
296 297 1.264288 CCCTCGTTTTCAAGTCTGCAC 59.736 52.381 0.00 0.00 0.00 4.57
297 298 1.140052 TCCCTCGTTTTCAAGTCTGCA 59.860 47.619 0.00 0.00 0.00 4.41
298 299 1.801178 CTCCCTCGTTTTCAAGTCTGC 59.199 52.381 0.00 0.00 0.00 4.26
299 300 3.386768 TCTCCCTCGTTTTCAAGTCTG 57.613 47.619 0.00 0.00 0.00 3.51
300 301 4.625607 ATTCTCCCTCGTTTTCAAGTCT 57.374 40.909 0.00 0.00 0.00 3.24
301 302 5.480205 ACTATTCTCCCTCGTTTTCAAGTC 58.520 41.667 0.00 0.00 0.00 3.01
302 303 5.485209 ACTATTCTCCCTCGTTTTCAAGT 57.515 39.130 0.00 0.00 0.00 3.16
303 304 5.811100 GGTACTATTCTCCCTCGTTTTCAAG 59.189 44.000 0.00 0.00 0.00 3.02
304 305 5.337813 GGGTACTATTCTCCCTCGTTTTCAA 60.338 44.000 0.00 0.00 38.29 2.69
305 306 4.161001 GGGTACTATTCTCCCTCGTTTTCA 59.839 45.833 0.00 0.00 38.29 2.69
306 307 4.691175 GGGTACTATTCTCCCTCGTTTTC 58.309 47.826 0.00 0.00 38.29 2.29
307 308 3.131755 CGGGTACTATTCTCCCTCGTTTT 59.868 47.826 0.00 0.00 39.10 2.43
308 309 2.692041 CGGGTACTATTCTCCCTCGTTT 59.308 50.000 0.00 0.00 39.10 3.60
309 310 2.305009 CGGGTACTATTCTCCCTCGTT 58.695 52.381 0.00 0.00 39.10 3.85
310 311 1.478288 CCGGGTACTATTCTCCCTCGT 60.478 57.143 0.00 0.00 39.10 4.18
311 312 1.202855 TCCGGGTACTATTCTCCCTCG 60.203 57.143 0.00 0.00 39.10 4.63
312 313 2.671896 TCCGGGTACTATTCTCCCTC 57.328 55.000 0.00 0.00 39.10 4.30
313 314 2.246849 ACTTCCGGGTACTATTCTCCCT 59.753 50.000 0.00 0.00 39.10 4.20
314 315 2.675583 ACTTCCGGGTACTATTCTCCC 58.324 52.381 0.00 0.00 37.98 4.30
315 316 5.738495 GCTTAACTTCCGGGTACTATTCTCC 60.738 48.000 0.00 0.00 0.00 3.71
316 317 5.288015 GCTTAACTTCCGGGTACTATTCTC 58.712 45.833 0.00 0.00 0.00 2.87
317 318 4.202090 CGCTTAACTTCCGGGTACTATTCT 60.202 45.833 0.00 0.00 0.00 2.40
318 319 4.047142 CGCTTAACTTCCGGGTACTATTC 58.953 47.826 0.00 0.00 0.00 1.75
319 320 3.448660 ACGCTTAACTTCCGGGTACTATT 59.551 43.478 0.00 0.00 0.00 1.73
320 321 3.026694 ACGCTTAACTTCCGGGTACTAT 58.973 45.455 0.00 0.00 0.00 2.12
321 322 2.164219 CACGCTTAACTTCCGGGTACTA 59.836 50.000 0.00 0.00 0.00 1.82
322 323 1.067354 CACGCTTAACTTCCGGGTACT 60.067 52.381 0.00 0.00 0.00 2.73
323 324 1.353076 CACGCTTAACTTCCGGGTAC 58.647 55.000 0.00 0.00 0.00 3.34
324 325 0.390209 GCACGCTTAACTTCCGGGTA 60.390 55.000 0.00 0.00 0.00 3.69
325 326 1.670083 GCACGCTTAACTTCCGGGT 60.670 57.895 0.00 0.00 0.00 5.28
326 327 1.359459 GAGCACGCTTAACTTCCGGG 61.359 60.000 0.00 0.00 0.00 5.73
327 328 0.669318 TGAGCACGCTTAACTTCCGG 60.669 55.000 0.00 0.00 0.00 5.14
328 329 0.716108 CTGAGCACGCTTAACTTCCG 59.284 55.000 0.00 0.00 0.00 4.30
329 330 1.079503 CCTGAGCACGCTTAACTTCC 58.920 55.000 0.00 0.00 0.00 3.46
330 331 0.444260 GCCTGAGCACGCTTAACTTC 59.556 55.000 0.00 0.00 39.53 3.01
331 332 0.035458 AGCCTGAGCACGCTTAACTT 59.965 50.000 0.00 0.00 43.56 2.66
332 333 0.671781 CAGCCTGAGCACGCTTAACT 60.672 55.000 0.00 0.00 43.56 2.24
333 334 1.639298 CCAGCCTGAGCACGCTTAAC 61.639 60.000 0.00 0.00 43.56 2.01
334 335 1.375908 CCAGCCTGAGCACGCTTAA 60.376 57.895 0.00 0.00 43.56 1.85
335 336 2.230994 CTCCAGCCTGAGCACGCTTA 62.231 60.000 0.00 0.00 43.56 3.09
336 337 3.602513 CTCCAGCCTGAGCACGCTT 62.603 63.158 0.00 0.00 43.56 4.68
337 338 4.079850 CTCCAGCCTGAGCACGCT 62.080 66.667 0.00 0.00 43.56 5.07
338 339 2.897641 CTACTCCAGCCTGAGCACGC 62.898 65.000 0.00 0.00 43.56 5.34
339 340 1.140589 CTACTCCAGCCTGAGCACG 59.859 63.158 0.00 0.00 43.56 5.34
340 341 0.108424 CACTACTCCAGCCTGAGCAC 60.108 60.000 0.00 0.00 43.56 4.40
341 342 0.251787 TCACTACTCCAGCCTGAGCA 60.252 55.000 0.00 0.00 43.56 4.26
342 343 0.459489 CTCACTACTCCAGCCTGAGC 59.541 60.000 0.00 0.00 35.72 4.26
343 344 2.136298 TCTCACTACTCCAGCCTGAG 57.864 55.000 0.00 0.00 38.37 3.35
344 345 2.024941 TCATCTCACTACTCCAGCCTGA 60.025 50.000 0.00 0.00 0.00 3.86
345 346 2.382882 TCATCTCACTACTCCAGCCTG 58.617 52.381 0.00 0.00 0.00 4.85
346 347 2.836636 TCATCTCACTACTCCAGCCT 57.163 50.000 0.00 0.00 0.00 4.58
347 348 2.036992 CCATCATCTCACTACTCCAGCC 59.963 54.545 0.00 0.00 0.00 4.85
348 349 2.036992 CCCATCATCTCACTACTCCAGC 59.963 54.545 0.00 0.00 0.00 4.85
349 350 3.069300 CACCCATCATCTCACTACTCCAG 59.931 52.174 0.00 0.00 0.00 3.86
350 351 3.033909 CACCCATCATCTCACTACTCCA 58.966 50.000 0.00 0.00 0.00 3.86
351 352 3.068873 GTCACCCATCATCTCACTACTCC 59.931 52.174 0.00 0.00 0.00 3.85
352 353 3.068873 GGTCACCCATCATCTCACTACTC 59.931 52.174 0.00 0.00 0.00 2.59
353 354 3.034635 GGTCACCCATCATCTCACTACT 58.965 50.000 0.00 0.00 0.00 2.57
354 355 2.223829 CGGTCACCCATCATCTCACTAC 60.224 54.545 0.00 0.00 0.00 2.73
355 356 2.031870 CGGTCACCCATCATCTCACTA 58.968 52.381 0.00 0.00 0.00 2.74
356 357 0.826715 CGGTCACCCATCATCTCACT 59.173 55.000 0.00 0.00 0.00 3.41
357 358 0.537188 ACGGTCACCCATCATCTCAC 59.463 55.000 0.00 0.00 0.00 3.51
358 359 0.536724 CACGGTCACCCATCATCTCA 59.463 55.000 0.00 0.00 0.00 3.27
359 360 0.811616 GCACGGTCACCCATCATCTC 60.812 60.000 0.00 0.00 0.00 2.75
360 361 1.221840 GCACGGTCACCCATCATCT 59.778 57.895 0.00 0.00 0.00 2.90
361 362 0.392998 AAGCACGGTCACCCATCATC 60.393 55.000 0.00 0.00 0.00 2.92
362 363 0.038166 AAAGCACGGTCACCCATCAT 59.962 50.000 0.00 0.00 0.00 2.45
363 364 0.687920 TAAAGCACGGTCACCCATCA 59.312 50.000 0.00 0.00 0.00 3.07
364 365 1.338769 ACTAAAGCACGGTCACCCATC 60.339 52.381 0.00 0.00 0.00 3.51
365 366 0.690762 ACTAAAGCACGGTCACCCAT 59.309 50.000 0.00 0.00 0.00 4.00
366 367 1.340088 TACTAAAGCACGGTCACCCA 58.660 50.000 0.00 0.00 0.00 4.51
367 368 2.071540 GTTACTAAAGCACGGTCACCC 58.928 52.381 0.00 0.00 0.00 4.61
368 369 1.723003 CGTTACTAAAGCACGGTCACC 59.277 52.381 0.00 0.00 0.00 4.02
369 370 2.406357 GTCGTTACTAAAGCACGGTCAC 59.594 50.000 3.31 0.00 34.61 3.67
370 371 2.607771 GGTCGTTACTAAAGCACGGTCA 60.608 50.000 3.31 0.00 34.61 4.02
371 372 1.988467 GGTCGTTACTAAAGCACGGTC 59.012 52.381 3.31 0.00 34.61 4.79
372 373 1.615392 AGGTCGTTACTAAAGCACGGT 59.385 47.619 3.31 0.00 34.61 4.83
373 374 2.358939 AGGTCGTTACTAAAGCACGG 57.641 50.000 3.31 0.00 34.61 4.94
374 375 4.919754 ACTAAAGGTCGTTACTAAAGCACG 59.080 41.667 0.00 0.00 35.18 5.34
375 376 5.347093 GGACTAAAGGTCGTTACTAAAGCAC 59.653 44.000 0.00 0.00 45.35 4.40
376 377 5.244626 AGGACTAAAGGTCGTTACTAAAGCA 59.755 40.000 0.00 0.00 45.35 3.91
377 378 5.575995 CAGGACTAAAGGTCGTTACTAAAGC 59.424 44.000 0.00 0.00 45.35 3.51
378 379 6.098017 CCAGGACTAAAGGTCGTTACTAAAG 58.902 44.000 0.00 0.00 45.35 1.85
379 380 5.567423 GCCAGGACTAAAGGTCGTTACTAAA 60.567 44.000 0.00 0.00 45.35 1.85
380 381 4.082026 GCCAGGACTAAAGGTCGTTACTAA 60.082 45.833 0.00 0.00 45.35 2.24
381 382 3.445096 GCCAGGACTAAAGGTCGTTACTA 59.555 47.826 0.00 0.00 45.35 1.82
382 383 2.233186 GCCAGGACTAAAGGTCGTTACT 59.767 50.000 0.00 0.00 45.35 2.24
383 384 2.614779 GCCAGGACTAAAGGTCGTTAC 58.385 52.381 0.00 0.00 45.35 2.50
384 385 1.551883 GGCCAGGACTAAAGGTCGTTA 59.448 52.381 0.00 0.00 45.35 3.18
385 386 0.323957 GGCCAGGACTAAAGGTCGTT 59.676 55.000 0.00 0.00 45.35 3.85
386 387 1.551019 GGGCCAGGACTAAAGGTCGT 61.551 60.000 4.39 0.00 45.35 4.34
387 388 1.221021 GGGCCAGGACTAAAGGTCG 59.779 63.158 4.39 0.00 45.35 4.79
388 389 0.992695 AAGGGCCAGGACTAAAGGTC 59.007 55.000 6.18 0.00 43.79 3.85
389 390 1.456919 AAAGGGCCAGGACTAAAGGT 58.543 50.000 6.18 0.00 0.00 3.50
390 391 2.604912 AAAAGGGCCAGGACTAAAGG 57.395 50.000 6.18 0.00 0.00 3.11
391 392 3.767711 AGAAAAAGGGCCAGGACTAAAG 58.232 45.455 6.18 0.00 0.00 1.85
392 393 3.895704 AGAAAAAGGGCCAGGACTAAA 57.104 42.857 6.18 0.00 0.00 1.85
393 394 3.914435 AGTAGAAAAAGGGCCAGGACTAA 59.086 43.478 6.18 0.00 0.00 2.24
394 395 3.527937 AGTAGAAAAAGGGCCAGGACTA 58.472 45.455 6.18 0.00 0.00 2.59
395 396 2.349445 AGTAGAAAAAGGGCCAGGACT 58.651 47.619 6.18 0.68 0.00 3.85
396 397 2.881111 AGTAGAAAAAGGGCCAGGAC 57.119 50.000 6.18 0.00 0.00 3.85
397 398 3.263425 CACTAGTAGAAAAAGGGCCAGGA 59.737 47.826 6.18 0.00 0.00 3.86
398 399 3.009143 ACACTAGTAGAAAAAGGGCCAGG 59.991 47.826 6.18 0.00 0.00 4.45
399 400 4.003648 CACACTAGTAGAAAAAGGGCCAG 58.996 47.826 6.18 0.00 0.00 4.85
400 401 3.393278 ACACACTAGTAGAAAAAGGGCCA 59.607 43.478 6.18 0.00 0.00 5.36
401 402 4.001652 GACACACTAGTAGAAAAAGGGCC 58.998 47.826 3.59 0.00 0.00 5.80
402 403 4.895961 AGACACACTAGTAGAAAAAGGGC 58.104 43.478 3.59 0.00 0.00 5.19
403 404 6.097915 TGAGACACACTAGTAGAAAAAGGG 57.902 41.667 3.59 0.00 0.00 3.95
404 405 6.750148 ACTGAGACACACTAGTAGAAAAAGG 58.250 40.000 3.59 0.00 0.00 3.11
405 406 7.426410 TGACTGAGACACACTAGTAGAAAAAG 58.574 38.462 3.59 0.00 0.00 2.27
406 407 7.342769 TGACTGAGACACACTAGTAGAAAAA 57.657 36.000 3.59 0.00 0.00 1.94
407 408 6.954487 TGACTGAGACACACTAGTAGAAAA 57.046 37.500 3.59 0.00 0.00 2.29
408 409 7.337184 CCTATGACTGAGACACACTAGTAGAAA 59.663 40.741 3.59 0.00 0.00 2.52
409 410 6.824196 CCTATGACTGAGACACACTAGTAGAA 59.176 42.308 3.59 0.00 0.00 2.10
410 411 6.070136 ACCTATGACTGAGACACACTAGTAGA 60.070 42.308 3.59 0.00 0.00 2.59
411 412 6.116806 ACCTATGACTGAGACACACTAGTAG 58.883 44.000 0.00 0.00 0.00 2.57
412 413 6.063496 ACCTATGACTGAGACACACTAGTA 57.937 41.667 0.00 0.00 0.00 1.82
413 414 4.924625 ACCTATGACTGAGACACACTAGT 58.075 43.478 0.00 0.00 0.00 2.57
414 415 4.034626 CGACCTATGACTGAGACACACTAG 59.965 50.000 0.00 0.00 0.00 2.57
415 416 3.939592 CGACCTATGACTGAGACACACTA 59.060 47.826 0.00 0.00 0.00 2.74
416 417 2.750166 CGACCTATGACTGAGACACACT 59.250 50.000 0.00 0.00 0.00 3.55
417 418 2.488545 ACGACCTATGACTGAGACACAC 59.511 50.000 0.00 0.00 0.00 3.82
418 419 2.488153 CACGACCTATGACTGAGACACA 59.512 50.000 0.00 0.00 0.00 3.72
419 420 2.732597 GCACGACCTATGACTGAGACAC 60.733 54.545 0.00 0.00 0.00 3.67
420 421 1.472878 GCACGACCTATGACTGAGACA 59.527 52.381 0.00 0.00 0.00 3.41
421 422 1.202313 GGCACGACCTATGACTGAGAC 60.202 57.143 0.00 0.00 34.51 3.36
422 423 1.103803 GGCACGACCTATGACTGAGA 58.896 55.000 0.00 0.00 34.51 3.27
423 424 3.650409 GGCACGACCTATGACTGAG 57.350 57.895 0.00 0.00 34.51 3.35
462 463 0.181114 GAGGTAGCATGTCCATGGCA 59.819 55.000 6.96 9.20 39.16 4.92
516 520 2.189594 TTCCACAACAGAGGCATCAG 57.810 50.000 0.00 0.00 0.00 2.90
559 563 1.280710 TGCTACCCATTTGACACGGAT 59.719 47.619 0.00 0.00 0.00 4.18
590 605 4.735132 ATGTGTGTCCGGACGGCG 62.735 66.667 28.70 4.80 34.68 6.46
591 606 3.118454 CATGTGTGTCCGGACGGC 61.118 66.667 28.70 23.14 34.68 5.68
615 630 0.250124 ATTTGGTCGCTTCGTGGACA 60.250 50.000 0.00 0.00 34.87 4.02
677 692 2.207229 GGGCAACTCCAACCCAACC 61.207 63.158 0.00 0.00 43.64 3.77
678 693 0.759060 AAGGGCAACTCCAACCCAAC 60.759 55.000 0.00 0.00 46.88 3.77
679 694 0.854218 TAAGGGCAACTCCAACCCAA 59.146 50.000 0.00 0.00 46.88 4.12
680 695 0.111639 GTAAGGGCAACTCCAACCCA 59.888 55.000 0.00 0.00 46.88 4.51
681 696 0.958876 CGTAAGGGCAACTCCAACCC 60.959 60.000 0.00 0.00 44.62 4.11
718 733 0.975887 TCTGCACTGCACAGACCATA 59.024 50.000 4.31 0.00 39.21 2.74
719 734 0.109153 TTCTGCACTGCACAGACCAT 59.891 50.000 4.31 0.00 43.64 3.55
906 936 0.038251 TCTGCTCGTGTGGTGATCAC 60.038 55.000 17.91 17.91 46.23 3.06
922 952 3.857549 TCAATGAGAACTCCGTCTCTG 57.142 47.619 4.03 0.00 43.82 3.35
924 954 3.065510 TCGATCAATGAGAACTCCGTCTC 59.934 47.826 0.00 0.00 43.75 3.36
932 995 3.152261 ACGGAGTCGATCAATGAGAAC 57.848 47.619 0.00 0.00 29.74 3.01
953 1016 2.184322 GACGAGCCTGCGGATGAA 59.816 61.111 0.00 0.00 35.12 2.57
1025 1088 2.432628 CCCTCAGTTCCGACGCAC 60.433 66.667 0.00 0.00 0.00 5.34
1137 1200 3.844090 GGGAGCGTCAGGAGGAGC 61.844 72.222 0.00 0.00 0.00 4.70
1145 1208 1.945354 GATGAAGACGGGGAGCGTCA 61.945 60.000 0.00 0.00 38.68 4.35
1415 1478 1.671901 GAGGCCGGTGAGGAAGAGAG 61.672 65.000 1.90 0.00 45.00 3.20
1989 2052 1.376812 CCTAACCAACTCCACCGCC 60.377 63.158 0.00 0.00 0.00 6.13
2125 2191 3.025262 ACCTAGTAAGAAGAGCCCGAAG 58.975 50.000 0.00 0.00 0.00 3.79
2126 2192 3.097342 ACCTAGTAAGAAGAGCCCGAA 57.903 47.619 0.00 0.00 0.00 4.30
2127 2193 2.822707 ACCTAGTAAGAAGAGCCCGA 57.177 50.000 0.00 0.00 0.00 5.14
2128 2194 3.553904 AGTACCTAGTAAGAAGAGCCCG 58.446 50.000 0.00 0.00 0.00 6.13
2129 2195 8.330993 AGATATAGTACCTAGTAAGAAGAGCCC 58.669 40.741 0.00 0.00 0.00 5.19
2130 2196 9.169592 CAGATATAGTACCTAGTAAGAAGAGCC 57.830 40.741 0.00 0.00 0.00 4.70
2131 2197 9.729281 ACAGATATAGTACCTAGTAAGAAGAGC 57.271 37.037 0.00 0.00 0.00 4.09
2134 2200 8.732531 GCCACAGATATAGTACCTAGTAAGAAG 58.267 40.741 0.00 0.00 0.00 2.85
2135 2201 7.668886 GGCCACAGATATAGTACCTAGTAAGAA 59.331 40.741 0.00 0.00 0.00 2.52
2136 2202 7.173722 GGCCACAGATATAGTACCTAGTAAGA 58.826 42.308 0.00 0.00 0.00 2.10
2137 2203 6.093771 CGGCCACAGATATAGTACCTAGTAAG 59.906 46.154 2.24 0.00 0.00 2.34
2138 2204 5.942236 CGGCCACAGATATAGTACCTAGTAA 59.058 44.000 2.24 0.00 0.00 2.24
2139 2205 5.494724 CGGCCACAGATATAGTACCTAGTA 58.505 45.833 2.24 0.00 0.00 1.82
2140 2206 4.333690 CGGCCACAGATATAGTACCTAGT 58.666 47.826 2.24 0.00 0.00 2.57
2141 2207 3.128938 GCGGCCACAGATATAGTACCTAG 59.871 52.174 2.24 0.00 0.00 3.02
2142 2208 3.087031 GCGGCCACAGATATAGTACCTA 58.913 50.000 2.24 0.00 0.00 3.08
2143 2209 1.893801 GCGGCCACAGATATAGTACCT 59.106 52.381 2.24 0.00 0.00 3.08
2144 2210 1.893801 AGCGGCCACAGATATAGTACC 59.106 52.381 2.24 0.00 0.00 3.34
2145 2211 2.094649 GGAGCGGCCACAGATATAGTAC 60.095 54.545 2.24 0.00 36.34 2.73
2146 2212 2.168496 GGAGCGGCCACAGATATAGTA 58.832 52.381 2.24 0.00 36.34 1.82
2147 2213 0.969894 GGAGCGGCCACAGATATAGT 59.030 55.000 2.24 0.00 36.34 2.12
2148 2214 0.247736 GGGAGCGGCCACAGATATAG 59.752 60.000 2.24 0.00 38.95 1.31
2149 2215 1.192146 GGGGAGCGGCCACAGATATA 61.192 60.000 2.24 0.00 41.00 0.86
2150 2216 2.520536 GGGGAGCGGCCACAGATAT 61.521 63.158 2.24 0.00 41.00 1.63
2151 2217 2.306715 TAGGGGAGCGGCCACAGATA 62.307 60.000 2.24 0.00 45.20 1.98
2165 2231 3.282374 AAACCAAGCCGGCTAGGGG 62.282 63.158 36.57 33.33 41.48 4.79
2166 2232 1.749258 GAAACCAAGCCGGCTAGGG 60.749 63.158 34.00 34.00 41.48 3.53
2167 2233 0.322546 AAGAAACCAAGCCGGCTAGG 60.323 55.000 33.07 24.60 44.97 3.02
2170 2236 0.690762 TAGAAGAAACCAAGCCGGCT 59.309 50.000 27.08 27.08 39.03 5.52
2171 2237 1.751437 ATAGAAGAAACCAAGCCGGC 58.249 50.000 21.89 21.89 39.03 6.13
2172 2238 4.380550 GGAAAATAGAAGAAACCAAGCCGG 60.381 45.833 0.00 0.00 42.50 6.13
2173 2239 4.459337 AGGAAAATAGAAGAAACCAAGCCG 59.541 41.667 0.00 0.00 0.00 5.52
2174 2240 5.476945 TCAGGAAAATAGAAGAAACCAAGCC 59.523 40.000 0.00 0.00 0.00 4.35
2209 2275 3.910989 ACCTTTCCTTAGCTTGTTTGGT 58.089 40.909 0.00 0.00 0.00 3.67
2219 2285 9.893305 CAACAACAATACTAAACCTTTCCTTAG 57.107 33.333 0.00 0.00 0.00 2.18
2245 2311 0.037605 ATGTTCGTCGAACCCTCACC 60.038 55.000 29.85 8.79 41.35 4.02
2742 2808 0.810031 CGGCGATGAGGAAAACCGAT 60.810 55.000 0.00 0.00 43.19 4.18
2796 2862 3.147595 CGACCTGCGAGGATGGGA 61.148 66.667 8.91 0.00 44.57 4.37
2872 2938 2.354539 CCAAAGCAACAACCGGCG 60.355 61.111 0.00 0.00 34.54 6.46
2877 2943 2.100749 AGCTACAACCCAAAGCAACAAC 59.899 45.455 0.00 0.00 38.75 3.32
2968 3034 1.268032 GCTACATCCATTCAAACGGCG 60.268 52.381 4.80 4.80 0.00 6.46
3002 3068 8.179615 GCAACCGTAGTTTAATTTTGCTACTAT 58.820 33.333 0.00 0.00 32.45 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.