Multiple sequence alignment - TraesCS3D01G235200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G235200 chr3D 100.000 4336 0 0 3460 7795 325139732 325144067 0.000000e+00 8008.0
1 TraesCS3D01G235200 chr3D 100.000 3160 0 0 1 3160 325136273 325139432 0.000000e+00 5836.0
2 TraesCS3D01G235200 chr3D 76.615 325 46 16 101 402 49486182 49486499 1.350000e-32 152.0
3 TraesCS3D01G235200 chr3D 89.344 122 10 3 1 121 366733681 366733562 4.870000e-32 150.0
4 TraesCS3D01G235200 chr3D 87.963 108 11 2 7149 7255 603017170 603017276 8.210000e-25 126.0
5 TraesCS3D01G235200 chr3D 87.778 90 9 2 7004 7092 603017068 603017156 3.850000e-18 104.0
6 TraesCS3D01G235200 chr3B 92.564 2730 141 29 103 2820 422550188 422552867 0.000000e+00 3860.0
7 TraesCS3D01G235200 chr3B 92.206 1437 55 20 5713 7122 422558395 422559801 0.000000e+00 1980.0
8 TraesCS3D01G235200 chr3B 90.644 1507 112 16 3768 5259 422555252 422556744 0.000000e+00 1975.0
9 TraesCS3D01G235200 chr3B 88.820 483 25 12 5256 5720 422556856 422557327 4.080000e-157 566.0
10 TraesCS3D01G235200 chr3B 90.909 297 19 2 3460 3756 422553388 422553676 7.330000e-105 392.0
11 TraesCS3D01G235200 chr3B 87.755 343 29 3 2818 3160 422553010 422553339 9.490000e-104 388.0
12 TraesCS3D01G235200 chr3B 84.177 158 23 2 4887 5044 669572513 669572358 1.350000e-32 152.0
13 TraesCS3D01G235200 chr3A 92.082 2286 110 32 297 2533 440502643 440500380 0.000000e+00 3153.0
14 TraesCS3D01G235200 chr3A 91.963 1518 60 22 5333 6798 440496217 440494710 0.000000e+00 2071.0
15 TraesCS3D01G235200 chr3A 88.623 1046 74 20 4318 5332 440497489 440496458 0.000000e+00 1230.0
16 TraesCS3D01G235200 chr3A 91.870 615 40 5 2549 3160 440498560 440497953 0.000000e+00 850.0
17 TraesCS3D01G235200 chr3A 92.308 559 34 9 297 851 440511408 440510855 0.000000e+00 785.0
18 TraesCS3D01G235200 chr3A 93.082 477 23 2 7318 7784 440490627 440490151 0.000000e+00 689.0
19 TraesCS3D01G235200 chr3A 91.434 502 29 7 6831 7329 440494704 440494214 0.000000e+00 676.0
20 TraesCS3D01G235200 chr3A 96.825 63 0 1 840 900 440505439 440505377 3.850000e-18 104.0
21 TraesCS3D01G235200 chr5A 86.676 713 86 2 7004 7707 539904702 539903990 0.000000e+00 782.0
22 TraesCS3D01G235200 chr2A 86.519 497 54 4 7223 7707 10640747 10640252 1.150000e-147 534.0
23 TraesCS3D01G235200 chr2A 88.987 227 22 3 7004 7227 10724473 10724247 2.140000e-70 278.0
24 TraesCS3D01G235200 chr2A 80.864 162 28 3 4881 5041 377255277 377255436 2.950000e-24 124.0
25 TraesCS3D01G235200 chr2B 92.308 221 15 2 7004 7222 683169734 683169954 5.870000e-81 313.0
26 TraesCS3D01G235200 chr2B 89.024 246 22 4 7008 7250 13918099 13918342 4.570000e-77 300.0
27 TraesCS3D01G235200 chr2B 90.678 118 8 3 1 117 625434338 625434223 3.770000e-33 154.0
28 TraesCS3D01G235200 chr5D 78.730 315 40 17 106 402 412944040 412944345 1.340000e-42 185.0
29 TraesCS3D01G235200 chr5D 92.727 110 7 1 1 110 326510879 326510987 2.910000e-34 158.0
30 TraesCS3D01G235200 chr5D 89.344 122 9 4 1 121 89458822 89458704 4.870000e-32 150.0
31 TraesCS3D01G235200 chr4A 93.636 110 5 2 1 110 499267046 499266939 6.260000e-36 163.0
32 TraesCS3D01G235200 chr4A 83.212 137 19 2 4905 5041 429845843 429845975 1.060000e-23 122.0
33 TraesCS3D01G235200 chr4A 83.077 65 10 1 3945 4008 219787156 219787092 3.040000e-04 58.4
34 TraesCS3D01G235200 chr1D 92.035 113 7 2 1 113 293398997 293398887 2.910000e-34 158.0
35 TraesCS3D01G235200 chr1D 89.344 122 10 3 1 122 138233798 138233680 4.870000e-32 150.0
36 TraesCS3D01G235200 chr1D 82.143 168 26 4 433 598 483257576 483257411 2.930000e-29 141.0
37 TraesCS3D01G235200 chr1D 100.000 29 0 0 3971 3999 354518002 354517974 4.000000e-03 54.7
38 TraesCS3D01G235200 chr6A 89.431 123 10 3 1 122 202315688 202315568 1.350000e-32 152.0
39 TraesCS3D01G235200 chr7A 80.612 196 36 2 403 596 55017987 55018182 4.870000e-32 150.0
40 TraesCS3D01G235200 chr7A 79.781 183 35 2 416 596 55009127 55009309 1.760000e-26 132.0
41 TraesCS3D01G235200 chr7D 87.597 129 12 4 1 129 66055378 66055254 6.300000e-31 147.0
42 TraesCS3D01G235200 chr6D 86.364 132 14 4 4912 5041 325311595 325311466 2.930000e-29 141.0
43 TraesCS3D01G235200 chr6D 82.803 157 23 4 4887 5041 226833770 226833616 3.790000e-28 137.0
44 TraesCS3D01G235200 chr6D 81.290 155 26 3 4887 5041 154510046 154509895 1.060000e-23 122.0
45 TraesCS3D01G235200 chr6B 81.290 155 26 3 4887 5041 301469679 301469528 1.060000e-23 122.0
46 TraesCS3D01G235200 chr1A 94.286 35 2 0 565 599 234817981 234818015 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G235200 chr3D 325136273 325144067 7794 False 6922.000000 8008 100.000000 1 7795 2 chr3D.!!$F2 7794
1 TraesCS3D01G235200 chr3B 422550188 422559801 9613 False 1526.833333 3860 90.483000 103 7122 6 chr3B.!!$F1 7019
2 TraesCS3D01G235200 chr3A 440490151 440505439 15288 True 1253.285714 3153 92.268429 297 7784 7 chr3A.!!$R2 7487
3 TraesCS3D01G235200 chr3A 440510855 440511408 553 True 785.000000 785 92.308000 297 851 1 chr3A.!!$R1 554
4 TraesCS3D01G235200 chr5A 539903990 539904702 712 True 782.000000 782 86.676000 7004 7707 1 chr5A.!!$R1 703

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
56 57 0.097674 CGCTACTTTGCTGCATCACC 59.902 55.000 1.84 0.00 0.00 4.02 F
87 88 0.319813 AAGGAAAAACCAGCGCATGC 60.320 50.000 11.47 7.91 42.04 4.06 F
1426 3951 0.389426 GTCAGAAACGAAGGCCGCTA 60.389 55.000 0.00 0.00 43.32 4.26 F
2117 4667 0.464452 GGGGTCGGTGATGGTAGAAG 59.536 60.000 0.00 0.00 0.00 2.85 F
3529 8042 0.108396 AAGGGTGCCCAAAAATGTGC 59.892 50.000 10.26 0.00 38.92 4.57 F
4075 10152 0.179000 CCCAAGGGACCTCGAATCTG 59.821 60.000 0.00 0.00 37.50 2.90 F
4387 10481 0.247735 GCGCACGTACACACAACAAA 60.248 50.000 0.30 0.00 0.00 2.83 F
4754 10851 0.729116 CACGACCACATCATTGAGCC 59.271 55.000 0.00 0.00 0.00 4.70 F
5391 11870 1.451567 CTGCAGGTGATGAGGGCAG 60.452 63.158 5.57 0.00 44.91 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1837 4367 0.031721 ACCACTCGTCGTCAAGGAAC 59.968 55.000 0.00 0.00 0.00 3.62 R
2061 4611 0.727122 GCGAGTGCATTTGTCTGTGC 60.727 55.000 0.00 0.00 42.15 4.57 R
3139 7652 0.031585 ACTCTGTGCGCGAAGTAACA 59.968 50.000 12.10 4.50 0.00 2.41 R
3686 8199 0.249398 AGTCTTACATGCCGGTCCAC 59.751 55.000 1.90 0.00 0.00 4.02 R
5522 12016 0.031178 CTCGTTATTCCCCGTACCCG 59.969 60.000 0.00 0.00 0.00 5.28 R
5523 12017 0.249615 GCTCGTTATTCCCCGTACCC 60.250 60.000 0.00 0.00 0.00 3.69 R
5525 12019 0.381801 TCGCTCGTTATTCCCCGTAC 59.618 55.000 0.00 0.00 0.00 3.67 R
5774 13347 1.068588 GCAGGTACACCGATGCATCTA 59.931 52.381 23.73 7.18 42.08 1.98 R
6798 14407 1.047801 ATGTTCCACCCTTTGTTGGC 58.952 50.000 0.00 0.00 0.00 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.494893 TGATACCTTGATTCTCAAAAACCG 57.505 37.500 0.00 0.00 35.73 4.44
25 26 6.371548 TGATACCTTGATTCTCAAAAACCGAG 59.628 38.462 0.00 0.00 35.73 4.63
26 27 4.714632 ACCTTGATTCTCAAAAACCGAGA 58.285 39.130 0.00 0.00 35.73 4.04
37 38 9.940166 TTCTCAAAAACCGAGAAAAATACTTAC 57.060 29.630 0.26 0.00 44.46 2.34
38 39 8.277713 TCTCAAAAACCGAGAAAAATACTTACG 58.722 33.333 0.00 0.00 36.59 3.18
39 40 6.852345 TCAAAAACCGAGAAAAATACTTACGC 59.148 34.615 0.00 0.00 0.00 4.42
40 41 6.549912 AAAACCGAGAAAAATACTTACGCT 57.450 33.333 0.00 0.00 0.00 5.07
43 44 5.958955 ACCGAGAAAAATACTTACGCTACT 58.041 37.500 0.00 0.00 0.00 2.57
44 45 6.393171 ACCGAGAAAAATACTTACGCTACTT 58.607 36.000 0.00 0.00 0.00 2.24
45 46 6.870439 ACCGAGAAAAATACTTACGCTACTTT 59.130 34.615 0.00 0.00 0.00 2.66
46 47 7.148689 ACCGAGAAAAATACTTACGCTACTTTG 60.149 37.037 0.00 0.00 0.00 2.77
47 48 6.677411 CGAGAAAAATACTTACGCTACTTTGC 59.323 38.462 0.00 0.00 0.00 3.68
48 49 7.411588 CGAGAAAAATACTTACGCTACTTTGCT 60.412 37.037 0.00 0.00 0.00 3.91
49 50 7.519002 AGAAAAATACTTACGCTACTTTGCTG 58.481 34.615 0.00 0.00 0.00 4.41
50 51 4.859629 AATACTTACGCTACTTTGCTGC 57.140 40.909 0.00 0.00 0.00 5.25
52 53 2.699954 ACTTACGCTACTTTGCTGCAT 58.300 42.857 1.84 0.00 0.00 3.96
53 54 2.673368 ACTTACGCTACTTTGCTGCATC 59.327 45.455 1.84 0.00 0.00 3.91
54 55 2.378445 TACGCTACTTTGCTGCATCA 57.622 45.000 1.84 0.00 0.00 3.07
55 56 0.798776 ACGCTACTTTGCTGCATCAC 59.201 50.000 1.84 0.00 0.00 3.06
56 57 0.097674 CGCTACTTTGCTGCATCACC 59.902 55.000 1.84 0.00 0.00 4.02
58 59 1.747355 GCTACTTTGCTGCATCACCAT 59.253 47.619 1.84 0.00 0.00 3.55
59 60 2.165030 GCTACTTTGCTGCATCACCATT 59.835 45.455 1.84 0.00 0.00 3.16
60 61 3.367703 GCTACTTTGCTGCATCACCATTT 60.368 43.478 1.84 0.00 0.00 2.32
61 62 3.308438 ACTTTGCTGCATCACCATTTC 57.692 42.857 1.84 0.00 0.00 2.17
62 63 2.028748 ACTTTGCTGCATCACCATTTCC 60.029 45.455 1.84 0.00 0.00 3.13
64 65 1.466856 TGCTGCATCACCATTTCCTC 58.533 50.000 0.00 0.00 0.00 3.71
65 66 1.005097 TGCTGCATCACCATTTCCTCT 59.995 47.619 0.00 0.00 0.00 3.69
66 67 2.097825 GCTGCATCACCATTTCCTCTT 58.902 47.619 0.00 0.00 0.00 2.85
67 68 2.098770 GCTGCATCACCATTTCCTCTTC 59.901 50.000 0.00 0.00 0.00 2.87
69 70 3.760151 CTGCATCACCATTTCCTCTTCAA 59.240 43.478 0.00 0.00 0.00 2.69
70 71 3.760151 TGCATCACCATTTCCTCTTCAAG 59.240 43.478 0.00 0.00 0.00 3.02
84 85 1.066908 CTTCAAGGAAAAACCAGCGCA 59.933 47.619 11.47 0.00 42.04 6.09
86 87 1.000385 TCAAGGAAAAACCAGCGCATG 60.000 47.619 11.47 4.88 42.04 4.06
87 88 0.319813 AAGGAAAAACCAGCGCATGC 60.320 50.000 11.47 7.91 42.04 4.06
97 98 3.583383 GCGCATGCTTCAAGAGGT 58.417 55.556 17.13 0.00 38.39 3.85
98 99 2.767536 GCGCATGCTTCAAGAGGTA 58.232 52.632 17.13 0.00 38.39 3.08
99 100 0.654683 GCGCATGCTTCAAGAGGTAG 59.345 55.000 17.13 0.00 38.39 3.18
100 101 0.654683 CGCATGCTTCAAGAGGTAGC 59.345 55.000 17.13 0.00 35.50 3.58
104 105 3.243002 GCATGCTTCAAGAGGTAGCAATC 60.243 47.826 11.37 0.00 46.78 2.67
140 141 5.661056 AAGATGAACAAGGTGATAGACGA 57.339 39.130 0.00 0.00 0.00 4.20
181 182 8.891720 ACACAACATTGCAAATAAAATTTCTGT 58.108 25.926 1.71 0.00 0.00 3.41
193 194 9.435688 AAATAAAATTTCTGTAACAATGGCCTC 57.564 29.630 3.32 0.00 0.00 4.70
207 208 3.940209 TGGCCTCTGTTGCAAAAATAG 57.060 42.857 3.32 0.00 0.00 1.73
211 212 2.095059 CCTCTGTTGCAAAAATAGCGCT 60.095 45.455 17.26 17.26 33.85 5.92
252 253 2.468777 GTGTTTTGCAACGAAGCTCATG 59.531 45.455 0.00 0.00 35.40 3.07
323 2825 6.820656 ACACATGTTTTGAGGATATCTGACTC 59.179 38.462 0.00 1.81 0.00 3.36
324 2826 7.046652 CACATGTTTTGAGGATATCTGACTCT 58.953 38.462 0.00 0.00 32.58 3.24
325 2827 7.011202 CACATGTTTTGAGGATATCTGACTCTG 59.989 40.741 0.00 0.00 32.58 3.35
379 2882 6.162777 CGGTGGATGTTTTTGTTTTATCCAT 58.837 36.000 7.44 0.00 46.26 3.41
384 2887 5.461032 TGTTTTTGTTTTATCCATCGGCT 57.539 34.783 0.00 0.00 0.00 5.52
392 2895 2.677573 TATCCATCGGCTGACGCGTG 62.678 60.000 20.70 3.71 43.86 5.34
411 2914 1.035139 GGCATCGCCCTTTTCATGAT 58.965 50.000 0.00 0.00 44.06 2.45
431 2934 8.443160 TCATGATGATTTCTTTGTACGACTTTC 58.557 33.333 0.00 0.00 0.00 2.62
617 3121 4.993905 CCTAAAAACGGCAATCTTTAGGG 58.006 43.478 14.38 2.54 43.37 3.53
814 3320 2.064014 GGAAATCTCGTTTCGTCGGTT 58.936 47.619 0.00 0.00 45.79 4.44
838 3344 2.345244 CCACCTGCAAGCGAGAGT 59.655 61.111 0.00 0.00 0.00 3.24
927 3437 2.627945 CCGCACCTTATAAAGCTCACA 58.372 47.619 0.00 0.00 0.00 3.58
928 3438 3.006940 CCGCACCTTATAAAGCTCACAA 58.993 45.455 0.00 0.00 0.00 3.33
929 3439 3.627577 CCGCACCTTATAAAGCTCACAAT 59.372 43.478 0.00 0.00 0.00 2.71
930 3440 4.260784 CCGCACCTTATAAAGCTCACAATC 60.261 45.833 0.00 0.00 0.00 2.67
931 3441 4.260784 CGCACCTTATAAAGCTCACAATCC 60.261 45.833 0.00 0.00 0.00 3.01
1242 3756 1.443872 CAGCTGGGTGTACGACGAC 60.444 63.158 5.57 0.00 0.00 4.34
1317 3831 3.771160 CAGAAGTACGGCCGCCCT 61.771 66.667 28.58 18.88 0.00 5.19
1377 3891 2.017559 GCGAGCTCCCGAGGTATGTT 62.018 60.000 8.47 0.00 39.57 2.71
1380 3894 1.480954 GAGCTCCCGAGGTATGTTTGA 59.519 52.381 0.87 0.00 39.57 2.69
1401 3926 2.412112 CGAGTCCGGGACCGATTC 59.588 66.667 23.21 13.09 42.83 2.52
1426 3951 0.389426 GTCAGAAACGAAGGCCGCTA 60.389 55.000 0.00 0.00 43.32 4.26
1432 3957 1.012486 AACGAAGGCCGCTAACGAAG 61.012 55.000 14.37 0.00 43.93 3.79
1496 4021 4.060038 TTCGACGGGCGGGACTTC 62.060 66.667 2.16 0.00 41.33 3.01
1646 4171 1.299620 CGTCTCCACCGTCACGTTT 60.300 57.895 0.00 0.00 0.00 3.60
1766 4296 1.879380 TGTAGTGCACAACATTCTGGC 59.121 47.619 21.04 0.00 32.95 4.85
1775 4305 2.093235 ACAACATTCTGGCTAGGCTCTC 60.093 50.000 18.18 0.00 0.00 3.20
1832 4362 2.670905 GCCAAACTGTTTTGTTGACACC 59.329 45.455 2.41 0.00 40.61 4.16
1833 4363 2.920490 CCAAACTGTTTTGTTGACACCG 59.080 45.455 2.41 0.00 40.61 4.94
1837 4367 2.940410 ACTGTTTTGTTGACACCGGTAG 59.060 45.455 6.87 4.38 0.00 3.18
2041 4588 1.562575 CGTAGTGCCAAACCCACGAC 61.563 60.000 0.00 0.00 39.09 4.34
2059 4609 2.751837 CCGCTTCCTTCCCTTGCC 60.752 66.667 0.00 0.00 0.00 4.52
2060 4610 2.352805 CGCTTCCTTCCCTTGCCT 59.647 61.111 0.00 0.00 0.00 4.75
2061 4611 2.042831 CGCTTCCTTCCCTTGCCTG 61.043 63.158 0.00 0.00 0.00 4.85
2062 4612 2.346541 GCTTCCTTCCCTTGCCTGC 61.347 63.158 0.00 0.00 0.00 4.85
2063 4613 1.075482 CTTCCTTCCCTTGCCTGCA 59.925 57.895 0.00 0.00 0.00 4.41
2064 4614 1.228552 TTCCTTCCCTTGCCTGCAC 60.229 57.895 0.00 0.00 0.00 4.57
2065 4615 2.005606 TTCCTTCCCTTGCCTGCACA 62.006 55.000 0.00 0.00 0.00 4.57
2066 4616 1.975407 CCTTCCCTTGCCTGCACAG 60.975 63.158 0.00 0.00 0.00 3.66
2067 4617 1.073722 CTTCCCTTGCCTGCACAGA 59.926 57.895 0.00 0.00 0.00 3.41
2068 4618 1.228245 TTCCCTTGCCTGCACAGAC 60.228 57.895 0.00 0.00 0.00 3.51
2069 4619 1.993701 TTCCCTTGCCTGCACAGACA 61.994 55.000 0.00 0.00 0.00 3.41
2070 4620 1.529010 CCCTTGCCTGCACAGACAA 60.529 57.895 0.00 0.00 30.22 3.18
2071 4621 1.108727 CCCTTGCCTGCACAGACAAA 61.109 55.000 0.00 0.00 30.57 2.83
2117 4667 0.464452 GGGGTCGGTGATGGTAGAAG 59.536 60.000 0.00 0.00 0.00 2.85
2332 4889 7.717568 TCTTTTTCTATAGACTCCAGATTCCG 58.282 38.462 0.67 0.00 0.00 4.30
2352 4909 0.843309 TTTGGGAGAGACTTGGCACA 59.157 50.000 0.00 0.00 0.00 4.57
2422 4979 1.726791 GACTTGTAGGCACACGTGATG 59.273 52.381 25.01 17.22 37.28 3.07
2459 5016 9.803315 CAAGAAACTACAGCATATTAGTACTCA 57.197 33.333 0.00 0.00 0.00 3.41
2484 5044 2.831526 AGGTTGTTTGCTGGTTGAAAGT 59.168 40.909 0.00 0.00 0.00 2.66
2651 7015 4.954118 AGGTGTGTGGCCCTCGGA 62.954 66.667 0.00 0.00 0.00 4.55
2654 7018 2.112297 TGTGTGGCCCTCGGAAAC 59.888 61.111 0.00 0.00 0.00 2.78
2678 7042 2.617274 GCAAGTCGGCACCCAACTC 61.617 63.158 0.00 0.00 0.00 3.01
2777 7142 4.628074 TCTTGACTTTTTCTACACCTCCG 58.372 43.478 0.00 0.00 0.00 4.63
2814 7179 3.057526 GGCAATGTTTTCTACACCTCCAC 60.058 47.826 0.00 0.00 40.19 4.02
2836 7346 7.289549 TCCACCATTATAATCATTGGCAATTGA 59.710 33.333 10.65 11.81 32.26 2.57
2917 7427 6.811665 TGATTTACGATGTGTCCACTAGAAAG 59.188 38.462 0.00 0.00 0.00 2.62
2953 7463 0.610232 AGGCCATGAAAGAGGTGCAC 60.610 55.000 8.80 8.80 0.00 4.57
3000 7510 5.163723 CGACAATTGGACTATTGAGCACATT 60.164 40.000 10.83 0.00 38.56 2.71
3033 7543 0.909133 CCCTTTGGGTCCAATTGGGG 60.909 60.000 24.29 14.70 41.77 4.96
3057 7567 6.935208 GGTGAGGTTTATCTCATTATGGGTAC 59.065 42.308 0.00 0.00 44.43 3.34
3076 7589 3.893326 ACGGAGAATGACATCACATGA 57.107 42.857 0.00 0.00 0.00 3.07
3086 7599 3.622612 TGACATCACATGAAAGCATACGG 59.377 43.478 0.00 0.00 32.27 4.02
3139 7652 2.568623 AGGTGCGATTTCTTGTCCTT 57.431 45.000 0.00 0.00 0.00 3.36
3141 7654 1.880027 GGTGCGATTTCTTGTCCTTGT 59.120 47.619 0.00 0.00 0.00 3.16
3490 8003 8.195436 TGGGTATCTAAAATAGAGTTTCGACTG 58.805 37.037 0.00 0.00 38.38 3.51
3524 8037 3.441500 AAAAACAAGGGTGCCCAAAAA 57.558 38.095 10.26 0.00 38.92 1.94
3525 8038 3.660970 AAAACAAGGGTGCCCAAAAAT 57.339 38.095 10.26 0.00 38.92 1.82
3526 8039 2.636647 AACAAGGGTGCCCAAAAATG 57.363 45.000 10.26 3.27 38.92 2.32
3527 8040 1.506025 ACAAGGGTGCCCAAAAATGT 58.494 45.000 10.26 3.85 38.92 2.71
3528 8041 1.140652 ACAAGGGTGCCCAAAAATGTG 59.859 47.619 10.26 0.00 38.92 3.21
3529 8042 0.108396 AAGGGTGCCCAAAAATGTGC 59.892 50.000 10.26 0.00 38.92 4.57
3533 8046 0.884259 GTGCCCAAAAATGTGCCACC 60.884 55.000 0.00 0.00 0.00 4.61
3567 8080 4.785301 CAAGAGGGAGCCTGAATTCATTA 58.215 43.478 8.96 0.00 31.76 1.90
3571 8084 5.133322 AGAGGGAGCCTGAATTCATTAATCA 59.867 40.000 8.96 0.00 31.76 2.57
3616 8129 7.074653 TCACCATTAGGATTTAGGGTATGAC 57.925 40.000 0.00 0.00 38.69 3.06
3645 8158 1.202746 GGCTCCATCTCCACTCCATTC 60.203 57.143 0.00 0.00 0.00 2.67
3656 8169 2.240667 CCACTCCATTCACCCTTCATCT 59.759 50.000 0.00 0.00 0.00 2.90
3700 8213 1.298340 CTTGGTGGACCGGCATGTA 59.702 57.895 0.00 0.00 39.43 2.29
3701 8214 0.322098 CTTGGTGGACCGGCATGTAA 60.322 55.000 0.00 0.00 39.43 2.41
3723 8236 7.609146 TGTAAGACTCTTATCGACCTAACAGAA 59.391 37.037 1.77 0.00 0.00 3.02
3747 8260 3.391296 GGTCATGGCTTCCCTAACTATGA 59.609 47.826 0.00 0.00 0.00 2.15
3756 8269 6.042666 GGCTTCCCTAACTATGATCTCTTCTT 59.957 42.308 0.00 0.00 0.00 2.52
3757 8270 6.928492 GCTTCCCTAACTATGATCTCTTCTTG 59.072 42.308 0.00 0.00 0.00 3.02
3759 8272 5.841237 TCCCTAACTATGATCTCTTCTTGGG 59.159 44.000 0.00 0.00 0.00 4.12
3761 8274 6.239458 CCCTAACTATGATCTCTTCTTGGGTC 60.239 46.154 0.00 0.00 0.00 4.46
3762 8275 6.325028 CCTAACTATGATCTCTTCTTGGGTCA 59.675 42.308 0.00 0.00 0.00 4.02
3763 8276 6.821616 AACTATGATCTCTTCTTGGGTCAT 57.178 37.500 0.00 0.00 0.00 3.06
3764 8277 6.821616 ACTATGATCTCTTCTTGGGTCATT 57.178 37.500 0.00 0.00 0.00 2.57
3765 8278 7.205515 ACTATGATCTCTTCTTGGGTCATTT 57.794 36.000 0.00 0.00 0.00 2.32
3766 8279 7.278875 ACTATGATCTCTTCTTGGGTCATTTC 58.721 38.462 0.00 0.00 0.00 2.17
3767 8280 5.768980 TGATCTCTTCTTGGGTCATTTCT 57.231 39.130 0.00 0.00 0.00 2.52
3768 8281 5.738909 TGATCTCTTCTTGGGTCATTTCTC 58.261 41.667 0.00 0.00 0.00 2.87
3769 8282 5.249163 TGATCTCTTCTTGGGTCATTTCTCA 59.751 40.000 0.00 0.00 0.00 3.27
3782 9859 3.125146 TCATTTCTCATTTGGAACGAGCG 59.875 43.478 0.00 0.00 0.00 5.03
3791 9868 0.669619 TGGAACGAGCGTAACTCACA 59.330 50.000 0.00 0.00 46.63 3.58
3801 9878 2.030185 GCGTAACTCACAGGTCTTCTGA 60.030 50.000 0.00 0.00 46.18 3.27
3810 9887 2.103263 ACAGGTCTTCTGACACAAGTCC 59.897 50.000 0.00 0.00 46.18 3.85
3838 9915 3.310954 ACCACCAATCCTACTCTCCATCT 60.311 47.826 0.00 0.00 0.00 2.90
3843 9920 5.130145 ACCAATCCTACTCTCCATCTTCAAG 59.870 44.000 0.00 0.00 0.00 3.02
3866 9943 4.323868 GGAAGAGGTTGCTCTTTGGTCTAT 60.324 45.833 0.00 0.00 43.03 1.98
3886 9963 4.789012 ATTGCAGGTGTCTAACATTTGG 57.211 40.909 0.00 0.00 0.00 3.28
3896 9973 9.369672 AGGTGTCTAACATTTGGGTAAATTAAA 57.630 29.630 0.00 0.00 34.34 1.52
3904 9981 8.122472 ACATTTGGGTAAATTAAAGTCAGGAG 57.878 34.615 0.00 0.00 34.34 3.69
3920 9997 0.318762 GGAGGGTGAGACTGTGTGTC 59.681 60.000 0.00 0.00 45.67 3.67
3927 10004 2.483714 GTGAGACTGTGTGTCACCATGT 60.484 50.000 14.48 0.00 46.56 3.21
3965 10042 9.741647 CCCTCTAAATTTCTTCTTAATCAATGC 57.258 33.333 0.00 0.00 0.00 3.56
3993 10070 5.482686 GCAAATCTTTTGCCTTTGTTTCA 57.517 34.783 12.74 0.00 39.38 2.69
4051 10128 2.048603 GGATGAGTGCCACAAGCCC 61.049 63.158 0.00 0.00 42.71 5.19
4052 10129 2.360350 ATGAGTGCCACAAGCCCG 60.360 61.111 0.00 0.00 42.71 6.13
4074 10151 1.627297 GCCCAAGGGACCTCGAATCT 61.627 60.000 9.92 0.00 37.50 2.40
4075 10152 0.179000 CCCAAGGGACCTCGAATCTG 59.821 60.000 0.00 0.00 37.50 2.90
4076 10153 0.462759 CCAAGGGACCTCGAATCTGC 60.463 60.000 0.00 0.00 0.00 4.26
4077 10154 0.462759 CAAGGGACCTCGAATCTGCC 60.463 60.000 0.00 0.00 0.00 4.85
4080 10157 0.759436 GGGACCTCGAATCTGCCCTA 60.759 60.000 0.00 0.00 32.78 3.53
4088 10165 2.094182 TCGAATCTGCCCTAGACACAAC 60.094 50.000 0.00 0.00 38.49 3.32
4095 10172 1.407025 GCCCTAGACACAACTAAGGGC 60.407 57.143 14.47 14.47 42.86 5.19
4104 10181 1.348036 ACAACTAAGGGCTCACTCACC 59.652 52.381 0.00 0.00 0.00 4.02
4111 10188 1.077993 AGGGCTCACTCACCTAAGACT 59.922 52.381 0.00 0.00 31.53 3.24
4112 10189 2.312140 AGGGCTCACTCACCTAAGACTA 59.688 50.000 0.00 0.00 31.53 2.59
4113 10190 3.097614 GGGCTCACTCACCTAAGACTAA 58.902 50.000 0.00 0.00 0.00 2.24
4114 10191 3.707102 GGGCTCACTCACCTAAGACTAAT 59.293 47.826 0.00 0.00 0.00 1.73
4115 10192 4.894114 GGGCTCACTCACCTAAGACTAATA 59.106 45.833 0.00 0.00 0.00 0.98
4116 10193 5.540719 GGGCTCACTCACCTAAGACTAATAT 59.459 44.000 0.00 0.00 0.00 1.28
4142 10219 2.125512 CCCGCCTTCTTCCACTCG 60.126 66.667 0.00 0.00 0.00 4.18
4165 10256 2.325484 TGTTCTCTACAACTGCTCCCA 58.675 47.619 0.00 0.00 32.64 4.37
4185 10279 4.262549 CCCATGAGAGAGCTATTCCTGAAG 60.263 50.000 0.00 0.00 0.00 3.02
4191 10285 2.032620 GAGCTATTCCTGAAGACCCGA 58.967 52.381 0.00 0.00 0.00 5.14
4205 10299 5.878116 TGAAGACCCGACAATTTATTTCGAT 59.122 36.000 0.00 0.00 34.62 3.59
4241 10335 1.079503 GTGCAAAGGATCACCGAGTC 58.920 55.000 0.00 0.00 41.83 3.36
4244 10338 1.734465 GCAAAGGATCACCGAGTCAAG 59.266 52.381 0.00 0.00 41.83 3.02
4254 10348 0.721718 CCGAGTCAAGACATTTCCGC 59.278 55.000 2.72 0.00 0.00 5.54
4269 10363 1.281419 TCCGCAGTTTTGGAGGGATA 58.719 50.000 0.00 0.00 0.00 2.59
4274 10368 2.906354 CAGTTTTGGAGGGATAGTCGG 58.094 52.381 0.00 0.00 0.00 4.79
4284 10378 1.446366 GATAGTCGGTTGGAGGGCC 59.554 63.158 0.00 0.00 0.00 5.80
4298 10392 2.358737 GGCCGACCACCACAAGAG 60.359 66.667 0.00 0.00 35.26 2.85
4337 10431 0.674895 GGAGCACGATTTGGCAGTCT 60.675 55.000 0.00 0.00 0.00 3.24
4342 10436 2.625737 CACGATTTGGCAGTCTGATCT 58.374 47.619 3.32 0.00 0.00 2.75
4358 10452 4.056740 CTGATCTGTCATAGCACATCACC 58.943 47.826 0.00 0.00 32.98 4.02
4387 10481 0.247735 GCGCACGTACACACAACAAA 60.248 50.000 0.30 0.00 0.00 2.83
4405 10499 6.931840 ACAACAAACCACTGTTTAACAACATT 59.068 30.769 0.00 0.00 42.73 2.71
4453 10548 6.322712 AGTTACAATGGGTTTTAGTTCTTGCA 59.677 34.615 0.00 0.00 0.00 4.08
4526 10622 4.466370 TGGTCCTCGAAAGATCACATAAGT 59.534 41.667 0.00 0.00 40.84 2.24
4613 10710 7.648510 CCGTAGAAGGAAGAACTACATTCATAC 59.351 40.741 0.00 0.00 40.09 2.39
4631 10728 2.696989 ACGATCAGCACAATGATGGA 57.303 45.000 5.84 0.00 40.02 3.41
4648 10745 1.143481 TGGATGATCACCGGCATGATT 59.857 47.619 8.81 0.00 39.48 2.57
4649 10746 2.233271 GGATGATCACCGGCATGATTT 58.767 47.619 8.81 1.06 39.48 2.17
4651 10748 3.820467 GGATGATCACCGGCATGATTTAA 59.180 43.478 8.81 0.10 39.48 1.52
4747 10844 1.349357 TGGGAATTCACGACCACATCA 59.651 47.619 7.93 0.00 0.00 3.07
4754 10851 0.729116 CACGACCACATCATTGAGCC 59.271 55.000 0.00 0.00 0.00 4.70
4765 10862 5.014858 ACATCATTGAGCCTGAGATGTTTT 58.985 37.500 0.00 0.00 44.86 2.43
4799 10896 7.220030 TCTTATATGTCTTTTGAGATGGCCTC 58.780 38.462 3.32 0.00 42.30 4.70
4815 10912 1.679032 GCCTCGTGGTCTAATGGCTTT 60.679 52.381 5.26 0.00 37.58 3.51
5043 11141 5.047092 AGGTTTGTGCATTATGCTTAAGCTT 60.047 36.000 26.90 22.60 45.31 3.74
5391 11870 1.451567 CTGCAGGTGATGAGGGCAG 60.452 63.158 5.57 0.00 44.91 4.85
5422 11903 3.947834 CTCGTTTCCTGGGCAATAATCTT 59.052 43.478 0.00 0.00 0.00 2.40
5423 11904 5.105567 TCGTTTCCTGGGCAATAATCTTA 57.894 39.130 0.00 0.00 0.00 2.10
5472 11965 3.114616 CTCACTCCCTTGTGCGCG 61.115 66.667 0.00 0.00 37.81 6.86
5478 11971 2.214181 CTCCCTTGTGCGCGACTAGT 62.214 60.000 12.10 0.00 0.00 2.57
5499 11993 1.479709 CCAACCCATAATTTCCGGCA 58.520 50.000 0.00 0.00 0.00 5.69
5522 12016 1.944234 AAAATGAATGACGCGGGGCC 61.944 55.000 12.47 0.00 0.00 5.80
5602 12098 1.806542 CGGTGCTTTGCAGTTCACTAT 59.193 47.619 12.04 0.00 40.08 2.12
5607 12103 4.023707 GTGCTTTGCAGTTCACTATCTTGT 60.024 41.667 6.94 0.00 40.08 3.16
5640 12136 4.931601 GGCAATTTGGAAAAGGAATCACTC 59.068 41.667 0.00 0.00 0.00 3.51
5734 13307 4.502263 CGATGACATCGCACCTGT 57.498 55.556 23.70 0.00 46.55 4.00
5786 13382 0.179073 GCACAGGTAGATGCATCGGT 60.179 55.000 20.67 12.06 41.65 4.69
5837 13433 3.682885 TCGGCGCCGACAGGTTTA 61.683 61.111 45.37 23.24 44.01 2.01
5859 13455 0.675633 AACTTGTGCAGGTTGATGGC 59.324 50.000 0.00 0.00 0.00 4.40
5893 13491 3.555956 GTGCATGGAGGAGTAATTACGTG 59.444 47.826 9.91 0.00 0.00 4.49
5897 13495 2.190981 GGAGGAGTAATTACGTGCGTG 58.809 52.381 9.91 0.00 0.00 5.34
5929 13528 4.467084 ACGGCGCGATCCACCAAT 62.467 61.111 12.10 0.00 0.00 3.16
5932 13531 2.709475 GCGCGATCCACCAATGTC 59.291 61.111 12.10 0.00 0.00 3.06
6352 13954 1.997874 GGCCAGATGGGTGGACTCT 60.998 63.158 0.00 0.00 43.21 3.24
6428 14030 0.322546 CAAGTAAGCCCACACCCCTC 60.323 60.000 0.00 0.00 0.00 4.30
6487 14089 7.274686 CGTTTAAAAACACTGACCTGTTCAAAT 59.725 33.333 6.41 0.00 38.81 2.32
6779 14388 0.030908 GGAACCAGATCCTCTACGCG 59.969 60.000 3.53 3.53 36.50 6.01
6798 14407 2.111878 CGCTCCTTGCATAGGGGG 59.888 66.667 14.31 6.65 45.61 5.40
6813 14422 2.200092 GGGCCAACAAAGGGTGGA 59.800 61.111 4.39 0.00 0.00 4.02
6816 14425 1.045911 GGCCAACAAAGGGTGGAACA 61.046 55.000 2.31 0.00 39.98 3.18
6906 14516 7.382218 GGTGAGTGTTTAAATTGGTGATTCAAG 59.618 37.037 0.00 0.00 0.00 3.02
6928 14538 1.353022 GGTGTTCAATACCAGGGTGGA 59.647 52.381 0.00 0.00 40.96 4.02
6929 14539 2.224917 GGTGTTCAATACCAGGGTGGAA 60.225 50.000 0.00 0.00 40.96 3.53
6930 14540 2.817844 GTGTTCAATACCAGGGTGGAAC 59.182 50.000 17.94 17.94 40.96 3.62
6932 14542 3.117474 TGTTCAATACCAGGGTGGAACAA 60.117 43.478 21.94 12.32 44.16 2.83
6933 14543 4.086457 GTTCAATACCAGGGTGGAACAAT 58.914 43.478 19.01 0.00 44.16 2.71
6934 14544 3.963129 TCAATACCAGGGTGGAACAATC 58.037 45.455 0.06 0.00 44.16 2.67
6937 14547 2.765689 ACCAGGGTGGAACAATCAAA 57.234 45.000 0.00 0.00 44.16 2.69
6938 14548 2.316108 ACCAGGGTGGAACAATCAAAC 58.684 47.619 0.00 0.00 44.16 2.93
6939 14549 1.618343 CCAGGGTGGAACAATCAAACC 59.382 52.381 0.00 0.00 44.16 3.27
6940 14550 1.269448 CAGGGTGGAACAATCAAACCG 59.731 52.381 0.00 0.00 44.16 4.44
6941 14551 1.144093 AGGGTGGAACAATCAAACCGA 59.856 47.619 0.00 0.00 44.16 4.69
6989 14600 7.250569 TCACAATTCAAGTTGACAGTCTTTTC 58.749 34.615 4.68 0.00 33.37 2.29
6999 14610 9.974980 AAGTTGACAGTCTTTTCTTTTAAAACA 57.025 25.926 1.31 0.00 0.00 2.83
7232 14845 1.963338 GCTATGTCCGAGCCCATGC 60.963 63.158 0.00 0.00 33.60 4.06
7241 14854 1.026584 CGAGCCCATGCAATCATCAA 58.973 50.000 0.00 0.00 41.13 2.57
7304 14917 4.789012 ATAATGACTTTGTTGCACCCAG 57.211 40.909 0.00 0.00 0.00 4.45
7309 14922 2.427095 GACTTTGTTGCACCCAGTTCTT 59.573 45.455 0.00 0.00 0.00 2.52
7314 14927 0.550914 TTGCACCCAGTTCTTCCTGT 59.449 50.000 0.00 0.00 0.00 4.00
7349 18560 4.609113 CGTTTCGTATCGCGGTAATCTCTA 60.609 45.833 6.13 0.00 41.72 2.43
7389 18600 4.141505 TGAGTGTGAAAGGAACCAAGATGA 60.142 41.667 0.00 0.00 0.00 2.92
7412 18623 2.899900 GCAGGAATGAAGTTTCCCCTTT 59.100 45.455 0.00 0.00 45.32 3.11
7417 18628 4.772100 GGAATGAAGTTTCCCCTTTCATCA 59.228 41.667 0.05 0.00 39.82 3.07
7431 18642 1.968017 CATCACGGGCAACAGCACT 60.968 57.895 0.00 0.00 39.74 4.40
7432 18643 1.228245 ATCACGGGCAACAGCACTT 60.228 52.632 0.00 0.00 39.74 3.16
7581 18800 2.254459 CGAGGACTTTGATCGACACAG 58.746 52.381 0.00 0.00 38.72 3.66
7630 18849 1.330521 CCCTTTCATATGTTGACGCCG 59.669 52.381 1.90 0.00 32.84 6.46
7671 18890 4.774124 TGATGCAACCAAAACCAATTCAA 58.226 34.783 0.00 0.00 0.00 2.69
7690 18909 0.107831 ACAGTTTGCAAGCCCTCGTA 59.892 50.000 9.92 0.00 0.00 3.43
7718 18937 2.251818 CCGATCCTGTCACATCCCTAT 58.748 52.381 0.00 0.00 0.00 2.57
7727 18946 7.815383 TCCTGTCACATCCCTATAATCATTTT 58.185 34.615 0.00 0.00 0.00 1.82
7735 18954 7.290714 ACATCCCTATAATCATTTTGTGCCAAT 59.709 33.333 0.00 0.00 0.00 3.16
7790 19009 8.735692 TGAGCATCATGTAATATTTGTCAAGA 57.264 30.769 0.00 0.00 42.56 3.02
7791 19010 8.615211 TGAGCATCATGTAATATTTGTCAAGAC 58.385 33.333 0.00 0.00 42.56 3.01
7792 19011 7.934457 AGCATCATGTAATATTTGTCAAGACC 58.066 34.615 0.00 0.00 0.00 3.85
7793 19012 7.013655 AGCATCATGTAATATTTGTCAAGACCC 59.986 37.037 0.00 0.00 0.00 4.46
7794 19013 6.918892 TCATGTAATATTTGTCAAGACCCG 57.081 37.500 0.00 0.00 0.00 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 8.277713 CGTAAGTATTTTTCTCGGTTTTTGAGA 58.722 33.333 0.00 0.00 40.59 3.27
13 14 7.059147 GCGTAAGTATTTTTCTCGGTTTTTGAG 59.941 37.037 0.00 0.00 41.68 3.02
14 15 6.852345 GCGTAAGTATTTTTCTCGGTTTTTGA 59.148 34.615 0.00 0.00 41.68 2.69
16 17 6.962686 AGCGTAAGTATTTTTCTCGGTTTTT 58.037 32.000 0.00 0.00 41.68 1.94
17 18 6.549912 AGCGTAAGTATTTTTCTCGGTTTT 57.450 33.333 0.00 0.00 41.68 2.43
19 20 6.393171 AGTAGCGTAAGTATTTTTCTCGGTT 58.607 36.000 0.00 0.00 41.68 4.44
21 22 6.882458 AAGTAGCGTAAGTATTTTTCTCGG 57.118 37.500 0.00 0.00 41.68 4.63
22 23 6.677411 GCAAAGTAGCGTAAGTATTTTTCTCG 59.323 38.462 0.00 0.00 41.68 4.04
23 24 7.688578 CAGCAAAGTAGCGTAAGTATTTTTCTC 59.311 37.037 0.00 0.00 40.15 2.87
25 26 6.248629 GCAGCAAAGTAGCGTAAGTATTTTTC 59.751 38.462 0.00 0.00 40.15 2.29
26 27 6.084277 GCAGCAAAGTAGCGTAAGTATTTTT 58.916 36.000 0.00 0.00 40.15 1.94
28 29 4.693566 TGCAGCAAAGTAGCGTAAGTATTT 59.306 37.500 0.00 0.00 40.15 1.40
29 30 4.250464 TGCAGCAAAGTAGCGTAAGTATT 58.750 39.130 0.00 0.00 40.15 1.89
30 31 3.857052 TGCAGCAAAGTAGCGTAAGTAT 58.143 40.909 0.00 0.00 40.15 2.12
31 32 3.306917 TGCAGCAAAGTAGCGTAAGTA 57.693 42.857 0.00 0.00 40.15 2.24
32 33 2.163818 TGCAGCAAAGTAGCGTAAGT 57.836 45.000 0.00 0.00 40.15 2.24
33 34 2.672874 TGATGCAGCAAAGTAGCGTAAG 59.327 45.455 0.00 0.00 40.15 2.34
34 35 2.415168 GTGATGCAGCAAAGTAGCGTAA 59.585 45.455 6.05 0.00 40.15 3.18
35 36 1.999735 GTGATGCAGCAAAGTAGCGTA 59.000 47.619 6.05 0.00 40.15 4.42
37 38 0.097674 GGTGATGCAGCAAAGTAGCG 59.902 55.000 6.05 0.00 40.15 4.26
38 39 1.167851 TGGTGATGCAGCAAAGTAGC 58.832 50.000 6.05 0.00 38.96 3.58
39 40 4.418392 GAAATGGTGATGCAGCAAAGTAG 58.582 43.478 6.05 0.00 44.96 2.57
40 41 3.193267 GGAAATGGTGATGCAGCAAAGTA 59.807 43.478 6.05 0.00 44.96 2.24
43 44 2.231964 GAGGAAATGGTGATGCAGCAAA 59.768 45.455 6.05 0.00 44.96 3.68
44 45 1.820519 GAGGAAATGGTGATGCAGCAA 59.179 47.619 6.05 0.00 44.96 3.91
45 46 1.005097 AGAGGAAATGGTGATGCAGCA 59.995 47.619 0.00 0.00 45.85 4.41
46 47 1.760192 AGAGGAAATGGTGATGCAGC 58.240 50.000 0.00 0.00 0.00 5.25
47 48 3.349927 TGAAGAGGAAATGGTGATGCAG 58.650 45.455 0.00 0.00 0.00 4.41
48 49 3.438216 TGAAGAGGAAATGGTGATGCA 57.562 42.857 0.00 0.00 0.00 3.96
49 50 4.367386 CTTGAAGAGGAAATGGTGATGC 57.633 45.455 0.00 0.00 0.00 3.91
62 63 2.605580 GCGCTGGTTTTTCCTTGAAGAG 60.606 50.000 0.00 0.00 37.07 2.85
64 65 1.066908 TGCGCTGGTTTTTCCTTGAAG 59.933 47.619 9.73 0.00 37.07 3.02
65 66 1.107114 TGCGCTGGTTTTTCCTTGAA 58.893 45.000 9.73 0.00 37.07 2.69
66 67 1.000385 CATGCGCTGGTTTTTCCTTGA 60.000 47.619 9.73 0.00 37.07 3.02
67 68 1.421382 CATGCGCTGGTTTTTCCTTG 58.579 50.000 9.73 0.00 37.07 3.61
69 70 1.290009 GCATGCGCTGGTTTTTCCT 59.710 52.632 9.73 0.00 37.07 3.36
70 71 3.860717 GCATGCGCTGGTTTTTCC 58.139 55.556 9.73 0.00 34.30 3.13
80 81 0.654683 CTACCTCTTGAAGCATGCGC 59.345 55.000 13.01 9.39 38.99 6.09
81 82 0.654683 GCTACCTCTTGAAGCATGCG 59.345 55.000 13.01 0.00 36.26 4.73
84 85 4.226427 TGATTGCTACCTCTTGAAGCAT 57.774 40.909 0.00 0.00 45.09 3.79
86 87 4.450053 AGATGATTGCTACCTCTTGAAGC 58.550 43.478 0.00 0.00 36.77 3.86
87 88 7.215789 ACATAGATGATTGCTACCTCTTGAAG 58.784 38.462 0.00 0.00 0.00 3.02
88 89 7.129457 ACATAGATGATTGCTACCTCTTGAA 57.871 36.000 0.00 0.00 0.00 2.69
90 91 6.293298 GCAACATAGATGATTGCTACCTCTTG 60.293 42.308 16.09 1.81 39.46 3.02
91 92 5.762218 GCAACATAGATGATTGCTACCTCTT 59.238 40.000 16.09 0.00 39.46 2.85
93 94 5.059161 TGCAACATAGATGATTGCTACCTC 58.941 41.667 20.37 0.00 41.24 3.85
95 96 5.756195 TTGCAACATAGATGATTGCTACC 57.244 39.130 20.37 4.03 41.24 3.18
97 98 7.628769 TCTTTTGCAACATAGATGATTGCTA 57.371 32.000 20.37 14.73 41.24 3.49
98 99 6.519679 TCTTTTGCAACATAGATGATTGCT 57.480 33.333 20.37 0.00 41.24 3.91
99 100 6.976349 TCATCTTTTGCAACATAGATGATTGC 59.024 34.615 27.68 16.33 44.75 3.56
104 105 7.274904 CCTTGTTCATCTTTTGCAACATAGATG 59.725 37.037 25.35 25.35 43.30 2.90
181 182 2.284754 TGCAACAGAGGCCATTGTTA 57.715 45.000 20.37 7.44 35.86 2.41
184 185 2.529780 TTTTGCAACAGAGGCCATTG 57.470 45.000 5.01 5.04 0.00 2.82
185 186 3.775261 ATTTTTGCAACAGAGGCCATT 57.225 38.095 5.01 0.00 0.00 3.16
193 194 4.324402 CCTTAAGCGCTATTTTTGCAACAG 59.676 41.667 12.05 0.00 0.00 3.16
207 208 3.400505 AAAGCGTATTTCCTTAAGCGC 57.599 42.857 12.99 12.99 41.39 5.92
211 212 5.807909 ACACCCTAAAGCGTATTTCCTTAA 58.192 37.500 0.00 0.00 0.00 1.85
286 287 1.225855 ACATGTGTGTCGCGAATTGT 58.774 45.000 12.06 5.70 31.41 2.71
323 2825 5.088739 GCCATCTGATTGACGTAAAAACAG 58.911 41.667 13.67 13.67 0.00 3.16
324 2826 4.759693 AGCCATCTGATTGACGTAAAAACA 59.240 37.500 0.00 0.00 0.00 2.83
325 2827 5.296813 AGCCATCTGATTGACGTAAAAAC 57.703 39.130 0.00 0.00 0.00 2.43
406 2909 7.693951 GGAAAGTCGTACAAAGAAATCATCATG 59.306 37.037 0.00 0.00 0.00 3.07
409 2912 7.129109 TGGAAAGTCGTACAAAGAAATCATC 57.871 36.000 0.00 0.00 0.00 2.92
411 2914 7.333423 CCTATGGAAAGTCGTACAAAGAAATCA 59.667 37.037 0.00 0.00 0.00 2.57
431 2934 5.243954 TGAGTGGATACGAGAAATCCTATGG 59.756 44.000 3.93 0.00 42.94 2.74
492 2995 4.036262 CAGGGTTTTGATTTGTTCGACTGA 59.964 41.667 0.00 0.00 0.00 3.41
814 3320 2.115910 CTTGCAGGTGGGGCTTGA 59.884 61.111 0.00 0.00 0.00 3.02
838 3344 1.410517 CTCGGGCTAGATTCTTGCTCA 59.589 52.381 18.05 6.42 32.55 4.26
927 3437 2.159085 GCTAGCTAACCAGTGACGGATT 60.159 50.000 7.70 0.00 0.00 3.01
928 3438 1.409427 GCTAGCTAACCAGTGACGGAT 59.591 52.381 7.70 0.00 0.00 4.18
929 3439 0.815734 GCTAGCTAACCAGTGACGGA 59.184 55.000 7.70 0.00 0.00 4.69
930 3440 0.818296 AGCTAGCTAACCAGTGACGG 59.182 55.000 17.69 0.00 0.00 4.79
931 3441 1.472878 TGAGCTAGCTAACCAGTGACG 59.527 52.381 19.38 0.00 0.00 4.35
1317 3831 3.510360 GGTACTTGAGGTAGAGCTTGTCA 59.490 47.826 0.00 0.00 0.00 3.58
1377 3891 3.296836 TCCCGGACTCGCGTTCAA 61.297 61.111 0.73 0.00 34.56 2.69
1426 3951 2.187599 GAGCAATGCGCCACTTCGTT 62.188 55.000 4.18 0.00 44.04 3.85
1496 4021 0.984961 TCCCCTTCCATCTGCTCAGG 60.985 60.000 0.00 0.00 0.00 3.86
1775 4305 9.790389 CTTTCACAAGTTATCACTACTACTAGG 57.210 37.037 0.00 0.00 30.68 3.02
1832 4362 0.518636 TCGTCGTCAAGGAACTACCG 59.481 55.000 0.00 0.00 44.74 4.02
1833 4363 1.538950 ACTCGTCGTCAAGGAACTACC 59.461 52.381 0.00 0.00 38.49 3.18
1837 4367 0.031721 ACCACTCGTCGTCAAGGAAC 59.968 55.000 0.00 0.00 0.00 3.62
2041 4588 2.751837 GCAAGGGAAGGAAGCGGG 60.752 66.667 0.00 0.00 0.00 6.13
2061 4611 0.727122 GCGAGTGCATTTGTCTGTGC 60.727 55.000 0.00 0.00 42.15 4.57
2062 4612 3.373020 GCGAGTGCATTTGTCTGTG 57.627 52.632 0.00 0.00 42.15 3.66
2142 4693 0.806102 CATGGCGTCTAGTTCCCACG 60.806 60.000 0.00 0.00 36.60 4.94
2332 4889 1.239347 GTGCCAAGTCTCTCCCAAAC 58.761 55.000 0.00 0.00 0.00 2.93
2352 4909 3.245371 TGGTGGAGCCAAGAAATTCTCAT 60.245 43.478 0.00 0.00 45.94 2.90
2422 4979 4.755411 TGTAGTTTCTTGACCATCGATCC 58.245 43.478 0.00 0.00 0.00 3.36
2459 5016 3.561143 TCAACCAGCAAACAACCTACAT 58.439 40.909 0.00 0.00 0.00 2.29
2636 7000 2.112297 TTTCCGAGGGCCACACAC 59.888 61.111 6.18 0.00 0.00 3.82
2637 7001 2.112297 GTTTCCGAGGGCCACACA 59.888 61.111 6.18 0.00 0.00 3.72
2651 7015 1.001378 GTGCCGACTTGCAGATTGTTT 60.001 47.619 0.00 0.00 43.02 2.83
2654 7018 1.503542 GGTGCCGACTTGCAGATTG 59.496 57.895 0.00 0.00 43.02 2.67
2678 7042 3.068873 TCTTTCCATTCCAACCGGTTTTG 59.931 43.478 19.55 12.36 0.00 2.44
2738 7102 2.306341 AGATCTGCGTCATCACAAGG 57.694 50.000 0.00 0.00 0.00 3.61
2739 7103 3.061831 GTCAAGATCTGCGTCATCACAAG 59.938 47.826 0.00 0.00 0.00 3.16
2740 7104 2.995939 GTCAAGATCTGCGTCATCACAA 59.004 45.455 0.00 0.00 0.00 3.33
2800 7165 8.096621 TGATTATAATGGTGGAGGTGTAGAAA 57.903 34.615 1.78 0.00 0.00 2.52
2814 7179 7.544566 GCTCTCAATTGCCAATGATTATAATGG 59.455 37.037 1.78 0.34 36.00 3.16
2836 7346 0.036010 CCCAGAAATGTGTCCGCTCT 60.036 55.000 0.00 0.00 0.00 4.09
2917 7427 0.955919 CCTCGGCCACTTTCCACTTC 60.956 60.000 2.24 0.00 0.00 3.01
2944 7454 3.386237 GGAGAGCCGTGCACCTCT 61.386 66.667 21.26 21.26 40.93 3.69
2953 7463 0.453390 GGCTTGATTTTGGAGAGCCG 59.547 55.000 0.00 0.00 42.91 5.52
3000 7510 0.323629 AAAGGGAGACGATTTGGCGA 59.676 50.000 0.00 0.00 34.83 5.54
3033 7543 6.645415 CGTACCCATAATGAGATAAACCTCAC 59.355 42.308 0.00 0.00 44.93 3.51
3057 7567 4.495349 GCTTTCATGTGATGTCATTCTCCG 60.495 45.833 0.00 0.00 0.00 4.63
3086 7599 1.723870 CAGAGTATTGCCCGCAAGC 59.276 57.895 8.27 3.80 39.47 4.01
3139 7652 0.031585 ACTCTGTGCGCGAAGTAACA 59.968 50.000 12.10 4.50 0.00 2.41
3141 7654 3.580904 AACTCTGTGCGCGAAGTAA 57.419 47.368 12.10 0.00 0.00 2.24
3465 7978 7.169476 GCAGTCGAAACTCTATTTTAGATACCC 59.831 40.741 0.00 0.00 33.66 3.69
3467 7980 8.747666 CAGCAGTCGAAACTCTATTTTAGATAC 58.252 37.037 0.00 0.00 33.66 2.24
3472 7985 8.683615 TCTATCAGCAGTCGAAACTCTATTTTA 58.316 33.333 0.00 0.00 31.71 1.52
3515 8028 1.053264 AGGTGGCACATTTTTGGGCA 61.053 50.000 20.82 0.00 44.52 5.36
3521 8034 0.831711 GGGGACAGGTGGCACATTTT 60.832 55.000 20.82 0.75 44.52 1.82
3522 8035 1.228862 GGGGACAGGTGGCACATTT 60.229 57.895 20.82 5.03 44.52 2.32
3523 8036 1.729267 AAGGGGACAGGTGGCACATT 61.729 55.000 20.82 3.79 44.52 2.71
3524 8037 1.729267 AAAGGGGACAGGTGGCACAT 61.729 55.000 20.82 10.11 44.52 3.21
3525 8038 2.391130 AAAGGGGACAGGTGGCACA 61.391 57.895 20.82 0.00 0.00 4.57
3526 8039 1.903404 CAAAGGGGACAGGTGGCAC 60.903 63.158 9.70 9.70 0.00 5.01
3527 8040 2.520458 CAAAGGGGACAGGTGGCA 59.480 61.111 0.00 0.00 0.00 4.92
3528 8041 2.991540 GCAAAGGGGACAGGTGGC 60.992 66.667 0.00 0.00 0.00 5.01
3529 8042 1.152567 TTGCAAAGGGGACAGGTGG 60.153 57.895 0.00 0.00 0.00 4.61
3571 8084 6.429385 GGTGAAACATCACTTGAAGAAGAGAT 59.571 38.462 0.00 0.00 39.34 2.75
3590 8103 7.996644 GTCATACCCTAAATCCTAATGGTGAAA 59.003 37.037 0.00 0.00 34.23 2.69
3602 8115 6.741801 GCCACTCCTTAGTCATACCCTAAATC 60.742 46.154 0.00 0.00 31.97 2.17
3645 8158 1.457346 GTGCTCCAAGATGAAGGGTG 58.543 55.000 0.00 0.00 0.00 4.61
3686 8199 0.249398 AGTCTTACATGCCGGTCCAC 59.751 55.000 1.90 0.00 0.00 4.02
3700 8213 7.363094 CCTTTCTGTTAGGTCGATAAGAGTCTT 60.363 40.741 10.87 10.87 30.25 3.01
3701 8214 6.095720 CCTTTCTGTTAGGTCGATAAGAGTCT 59.904 42.308 0.00 0.00 30.25 3.24
3723 8236 2.279173 AGTTAGGGAAGCCATGACCTT 58.721 47.619 0.00 0.00 34.59 3.50
3747 8260 5.768980 TGAGAAATGACCCAAGAAGAGAT 57.231 39.130 0.00 0.00 0.00 2.75
3756 8269 3.505680 CGTTCCAAATGAGAAATGACCCA 59.494 43.478 0.00 0.00 0.00 4.51
3757 8270 3.756434 TCGTTCCAAATGAGAAATGACCC 59.244 43.478 0.00 0.00 0.00 4.46
3759 8272 4.406943 GCTCGTTCCAAATGAGAAATGAC 58.593 43.478 12.03 0.00 45.39 3.06
3761 8274 3.120199 ACGCTCGTTCCAAATGAGAAATG 60.120 43.478 12.03 2.61 45.39 2.32
3762 8275 3.074412 ACGCTCGTTCCAAATGAGAAAT 58.926 40.909 12.03 0.00 45.39 2.17
3763 8276 2.489971 ACGCTCGTTCCAAATGAGAAA 58.510 42.857 12.03 0.00 45.39 2.52
3764 8277 2.163818 ACGCTCGTTCCAAATGAGAA 57.836 45.000 12.03 0.00 45.39 2.87
3765 8278 2.991190 GTTACGCTCGTTCCAAATGAGA 59.009 45.455 12.03 0.00 45.39 3.27
3766 8279 2.993899 AGTTACGCTCGTTCCAAATGAG 59.006 45.455 0.00 4.84 45.34 2.90
3767 8280 2.991190 GAGTTACGCTCGTTCCAAATGA 59.009 45.455 0.00 0.00 34.13 2.57
3768 8281 3.369835 GAGTTACGCTCGTTCCAAATG 57.630 47.619 0.00 0.00 34.13 2.32
3782 9859 4.202121 TGTGTCAGAAGACCTGTGAGTTAC 60.202 45.833 0.00 0.00 44.33 2.50
3791 9868 2.103263 GTGGACTTGTGTCAGAAGACCT 59.897 50.000 24.39 2.60 44.33 3.85
3801 9878 2.203153 GGTGGCGTGGACTTGTGT 60.203 61.111 0.00 0.00 0.00 3.72
3810 9887 1.024579 GTAGGATTGGTGGTGGCGTG 61.025 60.000 0.00 0.00 0.00 5.34
3866 9943 2.890311 CCCAAATGTTAGACACCTGCAA 59.110 45.455 0.00 0.00 0.00 4.08
3886 9963 5.812286 TCACCCTCCTGACTTTAATTTACC 58.188 41.667 0.00 0.00 0.00 2.85
3896 9973 0.485099 ACAGTCTCACCCTCCTGACT 59.515 55.000 0.00 0.00 39.98 3.41
3904 9981 0.249911 GGTGACACACAGTCTCACCC 60.250 60.000 11.96 0.00 42.88 4.61
3920 9997 2.031508 GGGTGTTACAAACGACATGGTG 60.032 50.000 0.00 0.00 0.00 4.17
3927 10004 6.993902 AGAAATTTAGAGGGTGTTACAAACGA 59.006 34.615 0.00 0.00 0.00 3.85
3965 10042 2.826277 GCAAAAGATTTGCCCCGTG 58.174 52.632 15.12 0.00 39.38 4.94
4027 10104 1.896220 TGTGGCACTCATCCTCAAAC 58.104 50.000 19.83 0.00 0.00 2.93
4051 10128 4.785453 GAGGTCCCTTGGGCTGCG 62.785 72.222 0.00 0.00 0.00 5.18
4052 10129 4.785453 CGAGGTCCCTTGGGCTGC 62.785 72.222 0.00 0.00 0.00 5.25
4055 10132 1.153147 GATTCGAGGTCCCTTGGGC 60.153 63.158 0.00 0.00 0.00 5.36
4074 10151 1.906574 CCCTTAGTTGTGTCTAGGGCA 59.093 52.381 0.00 0.00 36.32 5.36
4075 10152 1.407025 GCCCTTAGTTGTGTCTAGGGC 60.407 57.143 14.09 14.09 41.80 5.19
4076 10153 2.168728 GAGCCCTTAGTTGTGTCTAGGG 59.831 54.545 0.00 0.00 37.05 3.53
4077 10154 2.832129 TGAGCCCTTAGTTGTGTCTAGG 59.168 50.000 0.00 0.00 0.00 3.02
4080 10157 2.300437 GAGTGAGCCCTTAGTTGTGTCT 59.700 50.000 0.00 0.00 0.00 3.41
4088 10165 3.131400 GTCTTAGGTGAGTGAGCCCTTAG 59.869 52.174 0.00 0.00 0.00 2.18
4104 10181 8.718734 GGCGGGAAACATTAATATTAGTCTTAG 58.281 37.037 0.00 0.00 0.00 2.18
4111 10188 7.229907 GGAAGAAGGCGGGAAACATTAATATTA 59.770 37.037 0.00 0.00 0.00 0.98
4112 10189 6.040504 GGAAGAAGGCGGGAAACATTAATATT 59.959 38.462 0.00 0.00 0.00 1.28
4113 10190 5.535030 GGAAGAAGGCGGGAAACATTAATAT 59.465 40.000 0.00 0.00 0.00 1.28
4114 10191 4.885325 GGAAGAAGGCGGGAAACATTAATA 59.115 41.667 0.00 0.00 0.00 0.98
4115 10192 3.699538 GGAAGAAGGCGGGAAACATTAAT 59.300 43.478 0.00 0.00 0.00 1.40
4116 10193 3.086282 GGAAGAAGGCGGGAAACATTAA 58.914 45.455 0.00 0.00 0.00 1.40
4142 10219 3.935828 GGGAGCAGTTGTAGAGAACATTC 59.064 47.826 0.00 0.00 38.10 2.67
4165 10256 4.588528 GGTCTTCAGGAATAGCTCTCTCAT 59.411 45.833 0.00 0.00 0.00 2.90
4185 10279 5.986004 AGATCGAAATAAATTGTCGGGTC 57.014 39.130 0.00 0.00 35.51 4.46
4205 10299 7.500892 TCCTTTGCACTTTTTGTTGTATCTAGA 59.499 33.333 0.00 0.00 0.00 2.43
4217 10311 2.955660 TCGGTGATCCTTTGCACTTTTT 59.044 40.909 0.00 0.00 35.43 1.94
4241 10335 3.052036 CCAAAACTGCGGAAATGTCTTG 58.948 45.455 0.00 0.00 0.00 3.02
4244 10338 2.351738 CCTCCAAAACTGCGGAAATGTC 60.352 50.000 0.00 0.00 0.00 3.06
4254 10348 2.236395 ACCGACTATCCCTCCAAAACTG 59.764 50.000 0.00 0.00 0.00 3.16
4274 10368 4.717313 GGTGGTCGGCCCTCCAAC 62.717 72.222 14.11 13.18 44.87 3.77
4284 10378 0.608130 TGATCCTCTTGTGGTGGTCG 59.392 55.000 0.00 0.00 0.00 4.79
4285 10379 1.347707 TGTGATCCTCTTGTGGTGGTC 59.652 52.381 0.00 0.00 0.00 4.02
4289 10383 3.766591 CTCTAGTGTGATCCTCTTGTGGT 59.233 47.826 0.00 0.00 0.00 4.16
4298 10392 2.879646 CCGAGTACCTCTAGTGTGATCC 59.120 54.545 0.00 0.00 0.00 3.36
4337 10431 3.181462 GGGTGATGTGCTATGACAGATCA 60.181 47.826 5.77 5.77 45.13 2.92
4342 10436 1.284313 TGGGGTGATGTGCTATGACA 58.716 50.000 0.00 0.00 0.00 3.58
4405 10499 4.976224 TGACGAAAGACGAGATATTCCA 57.024 40.909 0.00 0.00 45.77 3.53
4412 10507 5.868043 TGTAACTATGACGAAAGACGAGA 57.132 39.130 0.00 0.00 45.77 4.04
4453 10548 1.805428 GCCGACCCATGCAACACTTT 61.805 55.000 0.00 0.00 0.00 2.66
4526 10622 3.411446 CCTGCTTGTGGTTGTTGATCTA 58.589 45.455 0.00 0.00 0.00 1.98
4613 10710 3.135994 TCATCCATCATTGTGCTGATCG 58.864 45.455 0.00 0.00 33.59 3.69
4631 10728 4.219070 CCATTAAATCATGCCGGTGATCAT 59.781 41.667 7.93 0.00 37.85 2.45
4648 10745 4.408921 CACCCTCACCACTATCTCCATTAA 59.591 45.833 0.00 0.00 0.00 1.40
4649 10746 3.967326 CACCCTCACCACTATCTCCATTA 59.033 47.826 0.00 0.00 0.00 1.90
4651 10748 2.293184 ACACCCTCACCACTATCTCCAT 60.293 50.000 0.00 0.00 0.00 3.41
4683 10780 0.099082 GGCGTCCTAGTCGAAGTCTG 59.901 60.000 8.41 0.00 0.00 3.51
4747 10844 3.057033 GCACAAAACATCTCAGGCTCAAT 60.057 43.478 0.00 0.00 0.00 2.57
4754 10851 5.980698 AGATATCGCACAAAACATCTCAG 57.019 39.130 0.00 0.00 0.00 3.35
4765 10862 9.196552 CTCAAAAGACATATAAGATATCGCACA 57.803 33.333 0.00 0.00 0.00 4.57
4787 10884 0.904865 AGACCACGAGGCCATCTCAA 60.905 55.000 5.01 0.00 42.55 3.02
4793 10890 1.904771 CCATTAGACCACGAGGCCA 59.095 57.895 5.01 0.00 39.06 5.36
4799 10896 0.096976 CGCAAAGCCATTAGACCACG 59.903 55.000 0.00 0.00 0.00 4.94
4871 10968 9.619316 CGAACCATAAAACACATTGAAAATAGA 57.381 29.630 0.00 0.00 0.00 1.98
4872 10969 9.405587 ACGAACCATAAAACACATTGAAAATAG 57.594 29.630 0.00 0.00 0.00 1.73
4879 10976 8.909708 ATATTCACGAACCATAAAACACATTG 57.090 30.769 0.00 0.00 0.00 2.82
4891 10988 3.426787 ACCCACAATATTCACGAACCA 57.573 42.857 0.00 0.00 0.00 3.67
5079 11177 9.442047 GTATTGGATATTATCTTTCACTCCCTG 57.558 37.037 3.77 0.00 0.00 4.45
5120 11218 3.262405 TGCGGGAAAAGTCAAGGTAGTAT 59.738 43.478 0.00 0.00 0.00 2.12
5169 11289 2.097629 CGACCGGCGATACATAGATGAT 59.902 50.000 9.30 0.00 44.57 2.45
5170 11290 1.467342 CGACCGGCGATACATAGATGA 59.533 52.381 9.30 0.00 44.57 2.92
5241 11362 4.458295 GCTGCAAGTAGTATCTATACCCGA 59.542 45.833 0.00 0.00 35.30 5.14
5243 11364 5.715070 CTGCTGCAAGTAGTATCTATACCC 58.285 45.833 3.02 0.00 42.18 3.69
5290 11529 4.399303 GGACCATCTTTTTCCATCGAATGT 59.601 41.667 0.00 0.00 0.00 2.71
5301 11540 6.418057 TTTAATGCACTGGACCATCTTTTT 57.582 33.333 0.00 0.00 0.00 1.94
5369 11848 1.748122 CCTCATCACCTGCAGTGCC 60.748 63.158 13.72 0.00 46.81 5.01
5388 11867 1.129437 GGAAACGAGTGATTGAGCTGC 59.871 52.381 0.00 0.00 0.00 5.25
5391 11870 1.734465 CCAGGAAACGAGTGATTGAGC 59.266 52.381 0.00 0.00 0.00 4.26
5472 11965 4.338400 GGAAATTATGGGTTGGCACTAGTC 59.662 45.833 0.00 0.00 0.00 2.59
5478 11971 1.479709 CCGGAAATTATGGGTTGGCA 58.520 50.000 0.00 0.00 0.00 4.92
5522 12016 0.031178 CTCGTTATTCCCCGTACCCG 59.969 60.000 0.00 0.00 0.00 5.28
5523 12017 0.249615 GCTCGTTATTCCCCGTACCC 60.250 60.000 0.00 0.00 0.00 3.69
5524 12018 0.595825 CGCTCGTTATTCCCCGTACC 60.596 60.000 0.00 0.00 0.00 3.34
5525 12019 0.381801 TCGCTCGTTATTCCCCGTAC 59.618 55.000 0.00 0.00 0.00 3.67
5526 12020 0.381801 GTCGCTCGTTATTCCCCGTA 59.618 55.000 0.00 0.00 0.00 4.02
5527 12021 1.140375 GTCGCTCGTTATTCCCCGT 59.860 57.895 0.00 0.00 0.00 5.28
5602 12098 2.623878 TTGCCCGTGACTTTACAAGA 57.376 45.000 0.00 0.00 0.00 3.02
5607 12103 2.865079 TCCAAATTGCCCGTGACTTTA 58.135 42.857 0.00 0.00 0.00 1.85
5640 12136 6.238648 ACCATTGTTTTAGGACTCCTACTTG 58.761 40.000 4.08 0.13 35.63 3.16
5734 13307 2.028763 GCGCTGAATAACGATGAAACGA 59.971 45.455 0.00 0.00 37.03 3.85
5773 13346 2.743938 CAGGTACACCGATGCATCTAC 58.256 52.381 23.73 17.74 42.08 2.59
5774 13347 1.068588 GCAGGTACACCGATGCATCTA 59.931 52.381 23.73 7.18 42.08 1.98
5837 13433 2.624838 CCATCAACCTGCACAAGTTTCT 59.375 45.455 0.00 0.00 0.00 2.52
5850 13446 1.077787 TCACATCGGGCCATCAACC 60.078 57.895 4.39 0.00 0.00 3.77
5859 13455 2.125147 ATGCACGGTCACATCGGG 60.125 61.111 0.00 0.00 0.00 5.14
5897 13495 2.503375 CGTGCACCTCGACGTACC 60.503 66.667 12.15 0.00 0.00 3.34
6428 14030 2.978452 CTATGCGGGAGTTGGGCTCG 62.978 65.000 0.00 0.00 45.03 5.03
6487 14089 3.365264 CGCTCCACTGTGTAGTACGTAAA 60.365 47.826 7.08 0.00 34.74 2.01
6798 14407 1.047801 ATGTTCCACCCTTTGTTGGC 58.952 50.000 0.00 0.00 0.00 4.52
6906 14516 2.159382 CACCCTGGTATTGAACACCAC 58.841 52.381 0.00 0.00 41.17 4.16
6940 14550 4.421058 GGGACAGCCGAAACATATTTTTC 58.579 43.478 4.54 4.54 33.83 2.29
6941 14551 3.194755 GGGGACAGCCGAAACATATTTTT 59.805 43.478 0.00 0.00 33.83 1.94
7024 14635 8.402472 CCTTGTAAATGACCTTGCGATTATTTA 58.598 33.333 0.00 0.00 0.00 1.40
7147 14759 1.151221 ATATGCCATTGCCTGCGGA 59.849 52.632 0.00 0.00 36.33 5.54
7161 14773 6.869913 ACTGGACTTTGCAAATGTTTCATATG 59.130 34.615 13.23 0.00 34.00 1.78
7232 14845 2.090967 CGGCGCAAAAAGTTGATGATTG 59.909 45.455 10.83 0.00 36.83 2.67
7241 14854 2.604174 CGGAGTCGGCGCAAAAAGT 61.604 57.895 10.83 0.00 0.00 2.66
7304 14917 6.401394 ACGGTTTATACCTAACAGGAAGAAC 58.599 40.000 0.00 0.00 42.66 3.01
7309 14922 5.047377 ACGAAACGGTTTATACCTAACAGGA 60.047 40.000 6.03 0.00 42.66 3.86
7314 14927 5.685511 GCGATACGAAACGGTTTATACCTAA 59.314 40.000 6.03 0.00 42.66 2.69
7349 18560 3.804325 CACTCAAGTTGTGTTGACTCGAT 59.196 43.478 7.83 0.00 32.88 3.59
7374 18585 3.094572 CCTGCATCATCTTGGTTCCTTT 58.905 45.455 0.00 0.00 0.00 3.11
7389 18600 2.043526 AGGGGAAACTTCATTCCTGCAT 59.956 45.455 6.08 0.00 46.66 3.96
7412 18623 1.965930 GTGCTGTTGCCCGTGATGA 60.966 57.895 0.00 0.00 38.71 2.92
7417 18628 2.124320 ACAAGTGCTGTTGCCCGT 60.124 55.556 0.00 0.00 32.99 5.28
7431 18642 0.598562 GACACTCTCAGGAGCGACAA 59.401 55.000 0.00 0.00 42.98 3.18
7432 18643 0.250945 AGACACTCTCAGGAGCGACA 60.251 55.000 0.00 0.00 42.98 4.35
7458 18669 6.635166 AAATTAACGTTGACGCAACTTTTT 57.365 29.167 11.99 10.62 41.62 1.94
7581 18800 0.310854 CAAACCCCTGAAACGAGTGC 59.689 55.000 0.00 0.00 0.00 4.40
7630 18849 1.406539 CATGGTTTATCTGGTGGCAGC 59.593 52.381 10.30 10.30 0.00 5.25
7671 18890 0.107831 TACGAGGGCTTGCAAACTGT 59.892 50.000 0.00 3.83 0.00 3.55
7690 18909 0.976641 TGACAGGATCGGTTCAGCTT 59.023 50.000 0.00 0.00 0.00 3.74
7764 18983 8.615211 TCTTGACAAATATTACATGATGCTCAC 58.385 33.333 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.