Multiple sequence alignment - TraesCS3D01G234600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G234600 chr3D 100.000 3812 0 0 1 3812 323721914 323718103 0.000000e+00 7040
1 TraesCS3D01G234600 chr3B 94.703 2983 87 17 774 3685 395350423 395353405 0.000000e+00 4567
2 TraesCS3D01G234600 chr3B 93.814 97 3 2 3714 3810 395353398 395353491 3.970000e-30 143
3 TraesCS3D01G234600 chr3A 96.388 2215 57 4 844 3037 398736136 398738348 0.000000e+00 3626
4 TraesCS3D01G234600 chr3A 96.707 668 16 6 3023 3685 398740126 398740792 0.000000e+00 1107
5 TraesCS3D01G234600 chr3A 93.814 97 5 1 3714 3810 398740785 398740880 1.100000e-30 145
6 TraesCS3D01G234600 chr5B 83.281 640 74 18 1 635 502142060 502142671 3.330000e-155 558
7 TraesCS3D01G234600 chr5B 87.500 392 35 11 2 391 657161996 657161617 1.260000e-119 440
8 TraesCS3D01G234600 chr5D 83.526 607 77 17 4 602 428234918 428235509 2.590000e-151 545
9 TraesCS3D01G234600 chr1A 85.714 525 59 15 1 516 29807478 29807995 1.200000e-149 540
10 TraesCS3D01G234600 chr1A 82.852 519 59 21 101 610 29807992 29808489 4.520000e-119 438
11 TraesCS3D01G234600 chr2B 79.869 765 90 34 2 727 207732808 207732069 5.690000e-138 501
12 TraesCS3D01G234600 chr2B 85.714 406 44 13 2 401 26193236 26192839 2.120000e-112 416
13 TraesCS3D01G234600 chr7D 81.281 609 89 19 1 602 162844097 162844687 1.600000e-128 470
14 TraesCS3D01G234600 chr6D 77.096 668 112 34 73 727 201537313 201536674 7.840000e-92 348


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G234600 chr3D 323718103 323721914 3811 True 7040 7040 100.000000 1 3812 1 chr3D.!!$R1 3811
1 TraesCS3D01G234600 chr3B 395350423 395353491 3068 False 2355 4567 94.258500 774 3810 2 chr3B.!!$F1 3036
2 TraesCS3D01G234600 chr3A 398736136 398740880 4744 False 1626 3626 95.636333 844 3810 3 chr3A.!!$F1 2966
3 TraesCS3D01G234600 chr5B 502142060 502142671 611 False 558 558 83.281000 1 635 1 chr5B.!!$F1 634
4 TraesCS3D01G234600 chr5D 428234918 428235509 591 False 545 545 83.526000 4 602 1 chr5D.!!$F1 598
5 TraesCS3D01G234600 chr1A 29807478 29808489 1011 False 489 540 84.283000 1 610 2 chr1A.!!$F1 609
6 TraesCS3D01G234600 chr2B 207732069 207732808 739 True 501 501 79.869000 2 727 1 chr2B.!!$R2 725
7 TraesCS3D01G234600 chr7D 162844097 162844687 590 False 470 470 81.281000 1 602 1 chr7D.!!$F1 601
8 TraesCS3D01G234600 chr6D 201536674 201537313 639 True 348 348 77.096000 73 727 1 chr6D.!!$R1 654

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
746 1337 0.249238 GAAATGCACACAAACGGGCA 60.249 50.0 0.00 0.0 41.00 5.36 F
747 1338 0.529555 AAATGCACACAAACGGGCAC 60.530 50.0 0.00 0.0 39.34 5.01 F
1686 2335 1.031571 TTGATGCAATGCCGGAGACC 61.032 55.0 5.05 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1840 2489 0.044092 TGCCTACCCCAATCAGGAGA 59.956 55.0 0.0 0.0 41.22 3.71 R
2531 3180 1.813513 ACCATTTCGAGACAAGCCAG 58.186 50.0 0.0 0.0 0.00 4.85 R
3433 5888 0.960364 ATTGTCGCGCCTTGGATTGT 60.960 50.0 0.0 0.0 0.00 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 6.754675 ACAAAAATGGAAAGGTTCGTACAAAG 59.245 34.615 0.00 0.00 0.00 2.77
43 46 5.740569 GGAAAGGTTCGTACAAAGTGAAAAC 59.259 40.000 0.00 0.00 0.00 2.43
44 47 6.403964 GGAAAGGTTCGTACAAAGTGAAAACT 60.404 38.462 0.00 0.00 0.00 2.66
47 50 7.797038 AGGTTCGTACAAAGTGAAAACTAAT 57.203 32.000 0.00 0.00 0.00 1.73
70 73 6.639632 TCTTGAATTGAGAAAACTTCAGGG 57.360 37.500 0.00 0.00 0.00 4.45
75 78 7.436118 TGAATTGAGAAAACTTCAGGGATTTG 58.564 34.615 0.00 0.00 0.00 2.32
624 1213 3.458163 CGGCGAGCTAGGTCCCAA 61.458 66.667 21.71 0.00 0.00 4.12
635 1224 1.080025 GGTCCCAAGTTCGAGTCGG 60.080 63.158 13.54 0.00 0.00 4.79
649 1240 0.616111 AGTCGGAACCTGCTCCATCT 60.616 55.000 0.00 0.00 34.91 2.90
651 1242 0.324738 TCGGAACCTGCTCCATCTCT 60.325 55.000 0.00 0.00 34.91 3.10
652 1243 0.539051 CGGAACCTGCTCCATCTCTT 59.461 55.000 0.00 0.00 34.91 2.85
681 1272 5.759506 TGCGTTCTAAAAACATGGAAGAA 57.240 34.783 0.00 0.00 0.00 2.52
737 1328 4.776647 GGGGCGCGAAATGCACAC 62.777 66.667 12.10 0.00 46.97 3.82
738 1329 4.036804 GGGCGCGAAATGCACACA 62.037 61.111 12.10 0.00 46.97 3.72
739 1330 2.050533 GGCGCGAAATGCACACAA 60.051 55.556 12.10 0.00 46.97 3.33
740 1331 1.659954 GGCGCGAAATGCACACAAA 60.660 52.632 12.10 0.00 46.97 2.83
741 1332 1.482531 GCGCGAAATGCACACAAAC 59.517 52.632 12.10 0.00 46.97 2.93
742 1333 1.760160 CGCGAAATGCACACAAACG 59.240 52.632 0.00 0.00 46.97 3.60
743 1334 1.595982 CGCGAAATGCACACAAACGG 61.596 55.000 0.00 0.00 46.97 4.44
744 1335 1.274798 GCGAAATGCACACAAACGGG 61.275 55.000 0.00 0.00 45.45 5.28
745 1336 1.274798 CGAAATGCACACAAACGGGC 61.275 55.000 0.00 0.00 0.00 6.13
746 1337 0.249238 GAAATGCACACAAACGGGCA 60.249 50.000 0.00 0.00 41.00 5.36
747 1338 0.529555 AAATGCACACAAACGGGCAC 60.530 50.000 0.00 0.00 39.34 5.01
761 1352 3.471354 GGCACCTACAGCGGTAAAT 57.529 52.632 0.00 0.00 34.94 1.40
762 1353 2.607631 GGCACCTACAGCGGTAAATA 57.392 50.000 0.00 0.00 34.94 1.40
763 1354 2.480845 GGCACCTACAGCGGTAAATAG 58.519 52.381 0.00 0.00 34.94 1.73
764 1355 2.480845 GCACCTACAGCGGTAAATAGG 58.519 52.381 14.15 14.15 40.16 2.57
765 1356 2.101917 GCACCTACAGCGGTAAATAGGA 59.898 50.000 19.92 0.00 38.08 2.94
766 1357 3.431207 GCACCTACAGCGGTAAATAGGAA 60.431 47.826 19.92 0.00 38.08 3.36
767 1358 4.761975 CACCTACAGCGGTAAATAGGAAA 58.238 43.478 19.92 0.00 38.08 3.13
768 1359 4.569564 CACCTACAGCGGTAAATAGGAAAC 59.430 45.833 19.92 0.00 38.08 2.78
769 1360 3.800506 CCTACAGCGGTAAATAGGAAACG 59.199 47.826 11.49 0.00 37.02 3.60
770 1361 2.004733 ACAGCGGTAAATAGGAAACGC 58.995 47.619 0.00 0.00 46.50 4.84
772 1363 1.371595 GCGGTAAATAGGAAACGCCA 58.628 50.000 0.00 0.00 41.02 5.69
818 1409 1.153842 TGCACTCGTGGTATCAGCG 60.154 57.895 0.00 0.00 0.00 5.18
821 1412 1.681327 ACTCGTGGTATCAGCGGGT 60.681 57.895 0.00 0.00 34.20 5.28
830 1421 1.344763 GTATCAGCGGGTAATGGAGCT 59.655 52.381 0.00 0.00 41.07 4.09
844 1435 2.440409 TGGAGCTCATTTCTTTCAGGC 58.560 47.619 17.19 0.00 0.00 4.85
886 1500 9.167311 CAGCTAATATATAAGGCCCAGTAAAAG 57.833 37.037 0.00 0.00 0.00 2.27
1508 2157 1.153329 ACAACTTCGTCGTGCCCAA 60.153 52.632 0.00 0.00 0.00 4.12
1519 2168 2.594303 TGCCCAACGTGCTGAAGG 60.594 61.111 0.00 0.00 0.00 3.46
1589 2238 2.045926 CTGGAAGGCGGGGTTCAG 60.046 66.667 0.00 0.00 0.00 3.02
1653 2302 3.469970 TGCGGCGAGGTGGATGAT 61.470 61.111 12.98 0.00 0.00 2.45
1657 2306 2.106938 GCGAGGTGGATGATGCGA 59.893 61.111 0.00 0.00 0.00 5.10
1678 2327 1.404583 GGGAGGTGTTTGATGCAATGC 60.405 52.381 0.00 0.00 0.00 3.56
1686 2335 1.031571 TTGATGCAATGCCGGAGACC 61.032 55.000 5.05 0.00 0.00 3.85
1689 2338 3.134127 GCAATGCCGGAGACCACC 61.134 66.667 5.05 0.00 0.00 4.61
1729 2378 6.494893 CCATGTTGATGGGGTATATAAACG 57.505 41.667 0.00 0.00 45.11 3.60
1840 2489 1.066002 CTGCATCGGCCGATTTTGAAT 59.934 47.619 37.36 14.25 40.13 2.57
1902 2551 1.451927 TGGCTTGGCGATGGATGTC 60.452 57.895 0.00 0.00 0.00 3.06
1995 2644 1.734465 CAGATGGTTGAAAGAGACGCC 59.266 52.381 0.00 0.00 0.00 5.68
2079 2728 3.820467 TCACTTGTCGAAAAATGCTCCAT 59.180 39.130 0.00 0.00 0.00 3.41
2088 2737 1.772836 AAATGCTCCATTCTGGCCTC 58.227 50.000 3.32 0.00 37.47 4.70
2358 3007 1.836802 GGGATGAGTTCTCAGGCTCTT 59.163 52.381 8.47 0.00 33.22 2.85
2418 3067 3.869272 GCAGCGTGCTGGGATTCG 61.869 66.667 22.22 0.00 43.77 3.34
2531 3180 3.242739 CGCACATGGAGCCTGTTAATAAC 60.243 47.826 0.00 0.00 0.00 1.89
3090 5538 2.441375 TGGGGATTTGTGAGAAGACACA 59.559 45.455 0.00 0.00 46.86 3.72
3122 5570 2.791347 TTTGCTGGGCGGATTACTTA 57.209 45.000 0.00 0.00 0.00 2.24
3192 5643 3.509575 TGCGTCCCTAGAATTGCAAAAAT 59.490 39.130 1.71 0.00 0.00 1.82
3433 5888 1.561076 ACAAGGCATGATGCTCCTACA 59.439 47.619 17.84 0.00 44.28 2.74
3607 6083 1.398390 CGCCTTTCTCTTCAATTCCCG 59.602 52.381 0.00 0.00 0.00 5.14
3697 6174 4.857871 GCGTTGGCTTTTTCTTTTCTTT 57.142 36.364 0.00 0.00 35.83 2.52
3698 6175 5.216566 GCGTTGGCTTTTTCTTTTCTTTT 57.783 34.783 0.00 0.00 35.83 2.27
3699 6176 5.627172 GCGTTGGCTTTTTCTTTTCTTTTT 58.373 33.333 0.00 0.00 35.83 1.94
3792 6271 1.442526 GCGGGAGATCAAGCCATGTG 61.443 60.000 0.00 0.00 0.00 3.21
3793 6272 0.107508 CGGGAGATCAAGCCATGTGT 60.108 55.000 0.00 0.00 0.00 3.72
3810 6289 1.109920 TGTCTCCCCGCATCTAGAGC 61.110 60.000 0.00 1.40 0.00 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.710324 TCACTTTGTACGAACCTTTCCAT 58.290 39.130 0.00 0.00 0.00 3.41
43 46 9.837525 CCTGAAGTTTTCTCAATTCAAGATTAG 57.162 33.333 0.00 0.00 31.70 1.73
44 47 8.796475 CCCTGAAGTTTTCTCAATTCAAGATTA 58.204 33.333 0.00 0.00 31.70 1.75
47 50 6.364701 TCCCTGAAGTTTTCTCAATTCAAGA 58.635 36.000 0.00 0.00 31.70 3.02
68 71 6.993786 TTTTGTGAACTTTTTCCAAATCCC 57.006 33.333 0.00 0.00 34.56 3.85
549 1138 7.910683 GCAGGTTGTAATAAGCTATGACTTTTC 59.089 37.037 0.00 0.00 0.00 2.29
552 1141 6.540189 CAGCAGGTTGTAATAAGCTATGACTT 59.460 38.462 0.00 0.00 0.00 3.01
553 1142 6.051717 CAGCAGGTTGTAATAAGCTATGACT 58.948 40.000 0.00 0.00 0.00 3.41
556 1145 4.319046 CGCAGCAGGTTGTAATAAGCTATG 60.319 45.833 0.00 0.00 0.00 2.23
560 1149 1.737793 ACGCAGCAGGTTGTAATAAGC 59.262 47.619 0.00 0.00 0.00 3.09
566 1155 2.668212 GCCACGCAGCAGGTTGTA 60.668 61.111 3.01 0.00 0.00 2.41
615 1204 1.171308 CGACTCGAACTTGGGACCTA 58.829 55.000 0.00 0.00 0.00 3.08
624 1213 1.179814 AGCAGGTTCCGACTCGAACT 61.180 55.000 0.00 0.00 41.58 3.01
724 1315 1.595982 CCGTTTGTGTGCATTTCGCG 61.596 55.000 0.00 0.00 46.97 5.87
725 1316 1.274798 CCCGTTTGTGTGCATTTCGC 61.275 55.000 0.00 0.00 42.89 4.70
726 1317 1.274798 GCCCGTTTGTGTGCATTTCG 61.275 55.000 0.00 0.00 0.00 3.46
727 1318 0.249238 TGCCCGTTTGTGTGCATTTC 60.249 50.000 0.00 0.00 0.00 2.17
728 1319 0.529555 GTGCCCGTTTGTGTGCATTT 60.530 50.000 0.00 0.00 35.96 2.32
729 1320 1.067250 GTGCCCGTTTGTGTGCATT 59.933 52.632 0.00 0.00 35.96 3.56
730 1321 2.727544 GTGCCCGTTTGTGTGCAT 59.272 55.556 0.00 0.00 35.96 3.96
731 1322 2.610532 TAGGTGCCCGTTTGTGTGCA 62.611 55.000 0.00 0.00 0.00 4.57
732 1323 1.894756 TAGGTGCCCGTTTGTGTGC 60.895 57.895 0.00 0.00 0.00 4.57
733 1324 0.816018 TGTAGGTGCCCGTTTGTGTG 60.816 55.000 0.00 0.00 0.00 3.82
734 1325 0.534203 CTGTAGGTGCCCGTTTGTGT 60.534 55.000 0.00 0.00 0.00 3.72
735 1326 1.852067 GCTGTAGGTGCCCGTTTGTG 61.852 60.000 0.00 0.00 0.00 3.33
736 1327 1.599797 GCTGTAGGTGCCCGTTTGT 60.600 57.895 0.00 0.00 0.00 2.83
737 1328 2.677003 CGCTGTAGGTGCCCGTTTG 61.677 63.158 0.00 0.00 0.00 2.93
738 1329 2.358247 CGCTGTAGGTGCCCGTTT 60.358 61.111 0.00 0.00 0.00 3.60
739 1330 4.388499 CCGCTGTAGGTGCCCGTT 62.388 66.667 0.00 0.00 0.00 4.44
741 1332 2.510064 TTTACCGCTGTAGGTGCCCG 62.510 60.000 7.11 0.00 45.54 6.13
742 1333 0.107361 ATTTACCGCTGTAGGTGCCC 60.107 55.000 7.11 0.00 45.54 5.36
743 1334 2.480845 CTATTTACCGCTGTAGGTGCC 58.519 52.381 7.11 0.00 45.54 5.01
744 1335 2.101917 TCCTATTTACCGCTGTAGGTGC 59.898 50.000 7.11 0.00 45.54 5.01
745 1336 4.395959 TTCCTATTTACCGCTGTAGGTG 57.604 45.455 7.11 0.00 45.54 4.00
747 1338 3.800506 CGTTTCCTATTTACCGCTGTAGG 59.199 47.826 0.00 0.00 35.99 3.18
748 1339 3.244579 GCGTTTCCTATTTACCGCTGTAG 59.755 47.826 0.00 0.00 38.22 2.74
749 1340 3.189285 GCGTTTCCTATTTACCGCTGTA 58.811 45.455 0.00 0.00 38.22 2.74
750 1341 2.004733 GCGTTTCCTATTTACCGCTGT 58.995 47.619 0.00 0.00 38.22 4.40
751 1342 1.329599 GGCGTTTCCTATTTACCGCTG 59.670 52.381 0.00 0.00 40.82 5.18
752 1343 1.065998 TGGCGTTTCCTATTTACCGCT 60.066 47.619 0.00 0.00 40.82 5.52
753 1344 1.371595 TGGCGTTTCCTATTTACCGC 58.628 50.000 0.00 0.00 40.33 5.68
754 1345 4.422546 TTTTGGCGTTTCCTATTTACCG 57.577 40.909 0.00 0.00 35.26 4.02
778 1369 2.116772 ACCTGTGCAATGCTGGCT 59.883 55.556 6.82 0.00 0.00 4.75
802 1393 1.226974 CCCGCTGATACCACGAGTG 60.227 63.158 0.00 0.00 0.00 3.51
818 1409 4.949856 TGAAAGAAATGAGCTCCATTACCC 59.050 41.667 12.15 4.96 44.28 3.69
821 1412 4.641989 GCCTGAAAGAAATGAGCTCCATTA 59.358 41.667 12.15 0.00 44.28 1.90
857 1471 7.996758 ACTGGGCCTTATATATTAGCTGTAT 57.003 36.000 4.53 0.00 0.00 2.29
1589 2238 2.538449 CTCAACACGTATACGCATTCCC 59.462 50.000 24.64 0.00 44.43 3.97
1653 2302 0.321564 CATCAAACACCTCCCTCGCA 60.322 55.000 0.00 0.00 0.00 5.10
1657 2306 2.173519 CATTGCATCAAACACCTCCCT 58.826 47.619 0.00 0.00 0.00 4.20
1686 2335 1.597027 GTTCCAGGTCACCACGGTG 60.597 63.158 10.09 10.09 46.64 4.94
1689 2338 1.004918 GGAGTTCCAGGTCACCACG 60.005 63.158 0.00 0.00 35.64 4.94
1718 2367 6.860080 TCGATTCTCCCATCGTTTATATACC 58.140 40.000 3.22 0.00 45.28 2.73
1729 2378 3.001414 CAGCATCATCGATTCTCCCATC 58.999 50.000 0.00 0.00 0.00 3.51
1804 2453 3.988976 TGCAGACAGAAGGCTAAGAAT 57.011 42.857 0.00 0.00 0.00 2.40
1840 2489 0.044092 TGCCTACCCCAATCAGGAGA 59.956 55.000 0.00 0.00 41.22 3.71
1902 2551 3.702548 TGATGATTGAGCTCCCCAAAATG 59.297 43.478 12.15 0.00 0.00 2.32
1995 2644 6.197655 CAGCAATCATCAAATTCCATGTAACG 59.802 38.462 0.00 0.00 0.00 3.18
2079 2728 2.158475 ACAATCAAACCTGAGGCCAGAA 60.158 45.455 5.01 0.00 43.02 3.02
2088 2737 3.362295 CAACGTCACACAATCAAACCTG 58.638 45.455 0.00 0.00 0.00 4.00
2358 3007 7.938490 TCATGCTGCATCTGATATAAAACCTTA 59.062 33.333 13.10 0.00 0.00 2.69
2418 3067 8.246180 TCATTCTTCATAAAAGCTGAAATGACC 58.754 33.333 4.99 0.00 30.53 4.02
2531 3180 1.813513 ACCATTTCGAGACAAGCCAG 58.186 50.000 0.00 0.00 0.00 4.85
3039 5487 6.258947 GGCCAGAGACTCAAACATTCTAATAC 59.741 42.308 5.02 0.00 0.00 1.89
3090 5538 3.624777 CCCAGCAAATCTAGACCATGTT 58.375 45.455 0.00 0.00 0.00 2.71
3122 5570 6.476378 ACAGTTTGCAGTTATCCTTCAGTAT 58.524 36.000 0.00 0.00 0.00 2.12
3215 5669 7.588488 GCAAGTAAACGTACAAAGCAGAATTTA 59.412 33.333 0.00 0.00 32.12 1.40
3218 5672 5.008217 TGCAAGTAAACGTACAAAGCAGAAT 59.992 36.000 0.00 0.00 32.93 2.40
3433 5888 0.960364 ATTGTCGCGCCTTGGATTGT 60.960 50.000 0.00 0.00 0.00 2.71
3607 6083 1.880675 TCGATCGCTCCAAGATAGGTC 59.119 52.381 11.09 0.00 0.00 3.85
3696 6173 7.148557 CCAGCCAACGTTTTCTAAAAAGAAAAA 60.149 33.333 13.29 0.00 45.62 1.94
3697 6174 6.311690 CCAGCCAACGTTTTCTAAAAAGAAAA 59.688 34.615 0.00 8.77 43.10 2.29
3698 6175 5.808030 CCAGCCAACGTTTTCTAAAAAGAAA 59.192 36.000 0.00 0.00 36.17 2.52
3699 6176 5.105675 ACCAGCCAACGTTTTCTAAAAAGAA 60.106 36.000 0.00 0.00 32.78 2.52
3700 6177 4.399934 ACCAGCCAACGTTTTCTAAAAAGA 59.600 37.500 0.00 0.00 32.78 2.52
3701 6178 4.678622 ACCAGCCAACGTTTTCTAAAAAG 58.321 39.130 0.00 0.46 34.28 2.27
3702 6179 4.722361 ACCAGCCAACGTTTTCTAAAAA 57.278 36.364 0.00 0.00 0.00 1.94
3703 6180 4.722361 AACCAGCCAACGTTTTCTAAAA 57.278 36.364 0.00 0.00 0.00 1.52
3704 6181 4.722361 AAACCAGCCAACGTTTTCTAAA 57.278 36.364 0.00 0.00 0.00 1.85
3705 6182 4.722361 AAAACCAGCCAACGTTTTCTAA 57.278 36.364 0.00 0.00 37.58 2.10
3706 6183 4.722361 AAAAACCAGCCAACGTTTTCTA 57.278 36.364 0.00 0.00 40.39 2.10
3707 6184 3.603158 AAAAACCAGCCAACGTTTTCT 57.397 38.095 0.00 0.00 40.39 2.52
3792 6271 1.663173 GCTCTAGATGCGGGGAGAC 59.337 63.158 0.00 0.00 0.00 3.36
3793 6272 4.182744 GCTCTAGATGCGGGGAGA 57.817 61.111 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.