Multiple sequence alignment - TraesCS3D01G233600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G233600 chr3D 100.000 4801 0 0 1 4801 322062964 322067764 0.000000e+00 8866.0
1 TraesCS3D01G233600 chr3D 97.222 36 1 0 2819 2854 322065749 322065784 1.440000e-05 62.1
2 TraesCS3D01G233600 chr3D 97.222 36 1 0 2786 2821 322065782 322065817 1.440000e-05 62.1
3 TraesCS3D01G233600 chr3B 97.360 1894 44 4 934 2821 397370537 397372430 0.000000e+00 3216.0
4 TraesCS3D01G233600 chr3B 93.556 1350 41 10 2819 4131 397372395 397373735 0.000000e+00 1969.0
5 TraesCS3D01G233600 chr3B 88.131 337 23 10 4347 4676 397374179 397374505 7.540000e-103 385.0
6 TraesCS3D01G233600 chr3B 95.200 125 6 0 4226 4350 397373734 397373858 1.050000e-46 198.0
7 TraesCS3D01G233600 chr3A 97.247 1889 43 5 938 2821 401713280 401711396 0.000000e+00 3192.0
8 TraesCS3D01G233600 chr3A 95.152 1320 42 9 2822 4131 401711428 401710121 0.000000e+00 2063.0
9 TraesCS3D01G233600 chr3A 92.279 272 21 0 4226 4497 401710122 401709851 2.100000e-103 387.0
10 TraesCS3D01G233600 chr3A 83.333 102 8 7 4130 4227 8698013 8697917 8.560000e-13 86.1
11 TraesCS3D01G233600 chr2D 89.796 784 69 5 1 783 555236417 555237190 0.000000e+00 994.0
12 TraesCS3D01G233600 chr2D 86.416 876 87 17 1 867 630678144 630678996 0.000000e+00 929.0
13 TraesCS3D01G233600 chr2D 84.175 891 103 22 1 868 367964667 367963792 0.000000e+00 830.0
14 TraesCS3D01G233600 chr2D 86.289 547 48 17 2866 3391 648540016 648540556 1.940000e-158 569.0
15 TraesCS3D01G233600 chr2D 90.709 409 32 4 2416 2818 648539417 648539825 1.520000e-149 540.0
16 TraesCS3D01G233600 chr7D 86.036 888 93 19 1 867 562386216 562387093 0.000000e+00 924.0
17 TraesCS3D01G233600 chr1D 86.889 839 89 11 1 836 389461984 389461164 0.000000e+00 920.0
18 TraesCS3D01G233600 chr5A 86.615 777 95 7 1 775 483704990 483704221 0.000000e+00 850.0
19 TraesCS3D01G233600 chr5A 92.727 55 4 0 4177 4231 627015309 627015255 3.980000e-11 80.5
20 TraesCS3D01G233600 chr5A 86.765 68 4 4 4168 4230 468871930 468871863 2.400000e-08 71.3
21 TraesCS3D01G233600 chr1B 83.977 855 114 16 4 844 384247149 384246304 0.000000e+00 798.0
22 TraesCS3D01G233600 chr7B 83.649 844 114 16 12 841 263665459 263666292 0.000000e+00 773.0
23 TraesCS3D01G233600 chr6B 83.216 852 119 20 2 843 617985920 617985083 0.000000e+00 760.0
24 TraesCS3D01G233600 chr6D 86.654 547 46 18 2866 3391 104075203 104075743 8.960000e-162 580.0
25 TraesCS3D01G233600 chr6D 86.289 547 50 16 2866 3391 45522190 45521648 5.390000e-159 571.0
26 TraesCS3D01G233600 chr6D 90.954 409 31 4 2416 2818 45522790 45522382 3.270000e-151 545.0
27 TraesCS3D01G233600 chr6D 90.709 409 32 4 2416 2818 104074603 104075011 1.520000e-149 540.0
28 TraesCS3D01G233600 chr6D 90.964 332 26 4 2016 2345 104074137 104074466 1.230000e-120 444.0
29 TraesCS3D01G233600 chr6D 90.120 334 29 4 2014 2345 45523258 45522927 9.550000e-117 431.0
30 TraesCS3D01G233600 chr6D 100.000 31 0 0 4149 4179 356602673 356602643 1.870000e-04 58.4
31 TraesCS3D01G233600 chr6D 100.000 31 0 0 4149 4179 461390485 461390455 1.870000e-04 58.4
32 TraesCS3D01G233600 chr7A 91.932 409 27 4 2416 2818 47927951 47927543 6.970000e-158 568.0
33 TraesCS3D01G233600 chr7A 91.018 334 26 4 2014 2345 47928421 47928090 9.480000e-122 448.0
34 TraesCS3D01G233600 chr7A 86.461 421 32 16 2992 3391 47927089 47926673 5.700000e-119 438.0
35 TraesCS3D01G233600 chr7A 90.909 55 3 2 4176 4228 64735542 64735596 6.670000e-09 73.1
36 TraesCS3D01G233600 chr6A 91.932 409 27 4 2416 2818 52030166 52030574 6.970000e-158 568.0
37 TraesCS3D01G233600 chr6A 86.055 545 51 16 2866 3389 52030766 52031306 3.240000e-156 562.0
38 TraesCS3D01G233600 chr6A 90.719 334 27 4 2014 2345 52029696 52030027 4.410000e-120 442.0
39 TraesCS3D01G233600 chr2A 91.932 409 27 4 2416 2818 86679081 86679489 6.970000e-158 568.0
40 TraesCS3D01G233600 chr2A 83.704 540 42 17 2866 3389 86679681 86680190 7.280000e-128 468.0
41 TraesCS3D01G233600 chr2A 91.018 334 26 4 2014 2345 86678611 86678942 9.480000e-122 448.0
42 TraesCS3D01G233600 chr2A 82.075 106 8 10 4130 4230 502869066 502868967 3.980000e-11 80.5
43 TraesCS3D01G233600 chr4D 91.139 79 5 1 4146 4224 355816398 355816474 6.570000e-19 106.0
44 TraesCS3D01G233600 chr4B 81.982 111 8 10 4124 4229 405090255 405090358 3.080000e-12 84.2
45 TraesCS3D01G233600 chr2B 81.982 111 9 9 4127 4232 796952255 796952359 3.080000e-12 84.2
46 TraesCS3D01G233600 chr1A 90.909 55 3 2 4178 4230 25124148 25124094 6.670000e-09 73.1
47 TraesCS3D01G233600 chr1A 100.000 31 0 0 4149 4179 83819903 83819933 1.870000e-04 58.4
48 TraesCS3D01G233600 chr1A 100.000 31 0 0 4149 4179 423909832 423909862 1.870000e-04 58.4
49 TraesCS3D01G233600 chr1A 100.000 31 0 0 4149 4179 516777146 516777116 1.870000e-04 58.4
50 TraesCS3D01G233600 chr5D 100.000 31 0 0 4149 4179 29498159 29498129 1.870000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G233600 chr3D 322062964 322067764 4800 False 2996.733333 8866 98.148000 1 4801 3 chr3D.!!$F1 4800
1 TraesCS3D01G233600 chr3B 397370537 397374505 3968 False 1442.000000 3216 93.561750 934 4676 4 chr3B.!!$F1 3742
2 TraesCS3D01G233600 chr3A 401709851 401713280 3429 True 1880.666667 3192 94.892667 938 4497 3 chr3A.!!$R2 3559
3 TraesCS3D01G233600 chr2D 555236417 555237190 773 False 994.000000 994 89.796000 1 783 1 chr2D.!!$F1 782
4 TraesCS3D01G233600 chr2D 630678144 630678996 852 False 929.000000 929 86.416000 1 867 1 chr2D.!!$F2 866
5 TraesCS3D01G233600 chr2D 367963792 367964667 875 True 830.000000 830 84.175000 1 868 1 chr2D.!!$R1 867
6 TraesCS3D01G233600 chr2D 648539417 648540556 1139 False 554.500000 569 88.499000 2416 3391 2 chr2D.!!$F3 975
7 TraesCS3D01G233600 chr7D 562386216 562387093 877 False 924.000000 924 86.036000 1 867 1 chr7D.!!$F1 866
8 TraesCS3D01G233600 chr1D 389461164 389461984 820 True 920.000000 920 86.889000 1 836 1 chr1D.!!$R1 835
9 TraesCS3D01G233600 chr5A 483704221 483704990 769 True 850.000000 850 86.615000 1 775 1 chr5A.!!$R2 774
10 TraesCS3D01G233600 chr1B 384246304 384247149 845 True 798.000000 798 83.977000 4 844 1 chr1B.!!$R1 840
11 TraesCS3D01G233600 chr7B 263665459 263666292 833 False 773.000000 773 83.649000 12 841 1 chr7B.!!$F1 829
12 TraesCS3D01G233600 chr6B 617985083 617985920 837 True 760.000000 760 83.216000 2 843 1 chr6B.!!$R1 841
13 TraesCS3D01G233600 chr6D 104074137 104075743 1606 False 521.333333 580 89.442333 2016 3391 3 chr6D.!!$F1 1375
14 TraesCS3D01G233600 chr6D 45521648 45523258 1610 True 515.666667 571 89.121000 2014 3391 3 chr6D.!!$R3 1377
15 TraesCS3D01G233600 chr7A 47926673 47928421 1748 True 484.666667 568 89.803667 2014 3391 3 chr7A.!!$R1 1377
16 TraesCS3D01G233600 chr6A 52029696 52031306 1610 False 524.000000 568 89.568667 2014 3389 3 chr6A.!!$F1 1375
17 TraesCS3D01G233600 chr2A 86678611 86680190 1579 False 494.666667 568 88.884667 2014 3389 3 chr2A.!!$F1 1375

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
906 956 0.103390 GAGAAGCCTACGAAGCCCTC 59.897 60.000 0.0 0.0 0.00 4.30 F
1288 1338 0.039180 GTCCCGTTCCCCCAGAAATT 59.961 55.000 0.0 0.0 35.85 1.82 F
2820 2974 1.200948 GGATGTTTGAAGCAGCAGGTC 59.799 52.381 0.0 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2836 2990 0.106769 TGGACCTGCTGCTTCAAACA 60.107 50.0 0.0 0.0 0.0 2.83 R
2839 2993 0.106769 TTGTGGACCTGCTGCTTCAA 60.107 50.0 0.0 0.0 0.0 2.69 R
4127 4725 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.0 0.0 0.0 0.0 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 93 4.752879 GCCGGCGCTGGAAGTACA 62.753 66.667 39.24 0.00 35.30 2.90
96 99 2.663196 GCTGGAAGTACACCGCCT 59.337 61.111 0.00 0.00 35.30 5.52
294 297 4.108299 ATGGCGCCGGGATGTTCA 62.108 61.111 23.90 0.00 0.00 3.18
301 304 1.026718 GCCGGGATGTTCACCTCAAG 61.027 60.000 2.18 0.00 0.00 3.02
414 427 2.285743 GGCTTGGGGAGAGAGGGT 60.286 66.667 0.00 0.00 0.00 4.34
423 440 2.629909 GGGGAGAGAGGGTAGGAACATT 60.630 54.545 0.00 0.00 0.00 2.71
454 472 4.154347 CACGGGGAGAGAGGCAGC 62.154 72.222 0.00 0.00 0.00 5.25
502 522 4.787280 CAGAGGCGAGGAGGGGGT 62.787 72.222 0.00 0.00 0.00 4.95
777 819 3.381045 GCCAGTTTCAACTTAAACCAGC 58.619 45.455 0.00 0.00 39.66 4.85
794 836 2.882137 CCAGCAAAAACGACCTCCTAAA 59.118 45.455 0.00 0.00 0.00 1.85
802 844 1.067354 ACGACCTCCTAAAAACGCGAT 60.067 47.619 15.93 0.00 0.00 4.58
806 848 2.289819 ACCTCCTAAAAACGCGATTGGA 60.290 45.455 15.93 9.91 0.00 3.53
817 859 1.268265 GCGATTGGACCGATTTTTGC 58.732 50.000 0.00 0.00 0.00 3.68
836 878 4.453183 CGCCGGCGCAAAAATCGA 62.453 61.111 38.48 0.00 34.03 3.59
838 880 2.867472 CCGGCGCAAAAATCGACT 59.133 55.556 10.83 0.00 31.67 4.18
839 881 1.511887 CCGGCGCAAAAATCGACTG 60.512 57.895 10.83 0.00 31.67 3.51
844 886 1.215382 GCAAAAATCGACTGGGGGC 59.785 57.895 0.00 0.00 0.00 5.80
845 887 1.250840 GCAAAAATCGACTGGGGGCT 61.251 55.000 0.00 0.00 0.00 5.19
846 888 1.256812 CAAAAATCGACTGGGGGCTT 58.743 50.000 0.00 0.00 0.00 4.35
868 918 0.938637 CGCGGCTGAAGATGCTCTAG 60.939 60.000 0.00 0.00 0.00 2.43
869 919 1.220817 GCGGCTGAAGATGCTCTAGC 61.221 60.000 0.00 0.00 42.50 3.42
870 920 0.388659 CGGCTGAAGATGCTCTAGCT 59.611 55.000 3.26 0.00 42.66 3.32
871 921 1.868469 GGCTGAAGATGCTCTAGCTG 58.132 55.000 0.00 0.00 42.66 4.24
872 922 1.138661 GGCTGAAGATGCTCTAGCTGT 59.861 52.381 0.00 0.00 42.66 4.40
873 923 2.203401 GCTGAAGATGCTCTAGCTGTG 58.797 52.381 0.00 0.00 42.66 3.66
874 924 2.203401 CTGAAGATGCTCTAGCTGTGC 58.797 52.381 0.00 0.00 42.66 4.57
876 926 1.932511 GAAGATGCTCTAGCTGTGCAC 59.067 52.381 10.75 10.75 46.07 4.57
877 927 1.193323 AGATGCTCTAGCTGTGCACT 58.807 50.000 19.41 0.00 46.07 4.40
878 928 1.134759 AGATGCTCTAGCTGTGCACTG 60.135 52.381 19.41 18.94 46.07 3.66
879 929 0.743701 ATGCTCTAGCTGTGCACTGC 60.744 55.000 33.86 33.86 46.07 4.40
880 930 1.375140 GCTCTAGCTGTGCACTGCA 60.375 57.895 38.96 26.87 42.33 4.41
881 931 0.952497 GCTCTAGCTGTGCACTGCAA 60.952 55.000 38.96 26.30 42.33 4.08
882 932 1.516161 CTCTAGCTGTGCACTGCAAA 58.484 50.000 38.96 28.34 41.47 3.68
883 933 1.875514 CTCTAGCTGTGCACTGCAAAA 59.124 47.619 38.96 26.33 41.47 2.44
884 934 1.603802 TCTAGCTGTGCACTGCAAAAC 59.396 47.619 38.96 17.91 41.47 2.43
885 935 1.334556 CTAGCTGTGCACTGCAAAACA 59.665 47.619 38.96 22.15 41.47 2.83
903 953 4.838046 GGAGAAGCCTACGAAGCC 57.162 61.111 0.00 0.00 0.00 4.35
904 954 1.144276 GGAGAAGCCTACGAAGCCC 59.856 63.158 0.00 0.00 0.00 5.19
905 955 1.331399 GGAGAAGCCTACGAAGCCCT 61.331 60.000 0.00 0.00 0.00 5.19
906 956 0.103390 GAGAAGCCTACGAAGCCCTC 59.897 60.000 0.00 0.00 0.00 4.30
907 957 0.614979 AGAAGCCTACGAAGCCCTCA 60.615 55.000 0.00 0.00 0.00 3.86
908 958 0.249398 GAAGCCTACGAAGCCCTCAA 59.751 55.000 0.00 0.00 0.00 3.02
909 959 0.690762 AAGCCTACGAAGCCCTCAAA 59.309 50.000 0.00 0.00 0.00 2.69
910 960 0.690762 AGCCTACGAAGCCCTCAAAA 59.309 50.000 0.00 0.00 0.00 2.44
911 961 1.073284 AGCCTACGAAGCCCTCAAAAA 59.927 47.619 0.00 0.00 0.00 1.94
959 1009 1.272490 CAGAAGCCTACGAGAACCACA 59.728 52.381 0.00 0.00 0.00 4.17
1150 1200 1.460273 TTTGCCGCCTCCTTTGTTCC 61.460 55.000 0.00 0.00 0.00 3.62
1288 1338 0.039180 GTCCCGTTCCCCCAGAAATT 59.961 55.000 0.00 0.00 35.85 1.82
1303 1353 4.038402 CCAGAAATTTATAAGCCCTGGCAG 59.962 45.833 11.38 7.75 44.88 4.85
1408 1458 5.224888 GCGACGAAACTGGGATATGTATTA 58.775 41.667 0.00 0.00 0.00 0.98
1727 1781 4.583073 TGACCGCACTACATCTACATGTAT 59.417 41.667 5.91 0.00 43.29 2.29
2116 2172 5.643348 CAGTATCAATTGCTTGTGACAGGTA 59.357 40.000 0.00 0.00 33.87 3.08
2295 2352 3.982475 TCAGTCGGCATATCTTAGCAAG 58.018 45.455 0.00 0.00 0.00 4.01
2296 2353 3.636764 TCAGTCGGCATATCTTAGCAAGA 59.363 43.478 0.00 1.85 42.69 3.02
2297 2354 4.099419 TCAGTCGGCATATCTTAGCAAGAA 59.901 41.667 0.00 0.00 41.63 2.52
2309 2369 4.937620 TCTTAGCAAGAACATGTCATGGAC 59.062 41.667 17.08 9.97 33.83 4.02
2348 2408 5.095145 TCTCAATTCTTCATCACTCTGGG 57.905 43.478 0.00 0.00 0.00 4.45
2384 2444 5.063438 GTGCAAAATGAGCGTGAGTAGATTA 59.937 40.000 0.00 0.00 33.85 1.75
2410 2470 6.583562 AGGAGTATGTTGCTTATAAGTGGTC 58.416 40.000 13.91 3.88 0.00 4.02
2492 2640 3.004839 GGGTTTCCAGTTTCTTCAGAAGC 59.995 47.826 5.15 0.00 35.21 3.86
2743 2897 6.648725 GCACAGAGTATTGGAGATAAGGAATC 59.351 42.308 0.00 0.00 34.52 2.52
2814 2968 4.778534 ATTGTCAGGATGTTTGAAGCAG 57.221 40.909 0.00 0.00 37.40 4.24
2815 2969 1.881973 TGTCAGGATGTTTGAAGCAGC 59.118 47.619 0.00 0.00 37.40 5.25
2816 2970 1.881973 GTCAGGATGTTTGAAGCAGCA 59.118 47.619 0.00 0.00 37.40 4.41
2817 2971 2.095364 GTCAGGATGTTTGAAGCAGCAG 60.095 50.000 0.00 0.00 37.40 4.24
2818 2972 1.201647 CAGGATGTTTGAAGCAGCAGG 59.798 52.381 0.00 0.00 0.00 4.85
2819 2973 1.202976 AGGATGTTTGAAGCAGCAGGT 60.203 47.619 0.00 0.00 0.00 4.00
2820 2974 1.200948 GGATGTTTGAAGCAGCAGGTC 59.799 52.381 0.00 0.00 0.00 3.85
2821 2975 2.157738 GATGTTTGAAGCAGCAGGTCT 58.842 47.619 0.00 0.00 0.00 3.85
2822 2976 2.057137 TGTTTGAAGCAGCAGGTCTT 57.943 45.000 0.00 0.00 0.00 3.01
2823 2977 2.378038 TGTTTGAAGCAGCAGGTCTTT 58.622 42.857 0.00 0.00 0.00 2.52
2824 2978 3.550820 TGTTTGAAGCAGCAGGTCTTTA 58.449 40.909 0.00 0.00 0.00 1.85
2825 2979 3.951037 TGTTTGAAGCAGCAGGTCTTTAA 59.049 39.130 0.00 0.00 0.00 1.52
2826 2980 4.400884 TGTTTGAAGCAGCAGGTCTTTAAA 59.599 37.500 0.00 0.00 0.00 1.52
2827 2981 5.068987 TGTTTGAAGCAGCAGGTCTTTAAAT 59.931 36.000 0.00 0.00 32.82 1.40
2828 2982 5.789643 TTGAAGCAGCAGGTCTTTAAATT 57.210 34.783 0.00 0.00 0.00 1.82
2829 2983 5.125100 TGAAGCAGCAGGTCTTTAAATTG 57.875 39.130 0.00 0.00 0.00 2.32
2830 2984 4.584325 TGAAGCAGCAGGTCTTTAAATTGT 59.416 37.500 0.00 0.00 0.00 2.71
2831 2985 4.773323 AGCAGCAGGTCTTTAAATTGTC 57.227 40.909 0.00 0.00 0.00 3.18
2832 2986 4.144297 AGCAGCAGGTCTTTAAATTGTCA 58.856 39.130 0.00 0.00 0.00 3.58
2833 2987 4.217118 AGCAGCAGGTCTTTAAATTGTCAG 59.783 41.667 0.00 0.00 0.00 3.51
2834 2988 4.616835 GCAGCAGGTCTTTAAATTGTCAGG 60.617 45.833 0.00 0.00 0.00 3.86
2835 2989 4.761739 CAGCAGGTCTTTAAATTGTCAGGA 59.238 41.667 0.00 0.00 0.00 3.86
2836 2990 5.416952 CAGCAGGTCTTTAAATTGTCAGGAT 59.583 40.000 0.00 0.00 0.00 3.24
2837 2991 5.416952 AGCAGGTCTTTAAATTGTCAGGATG 59.583 40.000 0.00 0.00 37.54 3.51
2838 2992 5.183904 GCAGGTCTTTAAATTGTCAGGATGT 59.816 40.000 0.00 0.00 37.40 3.06
2839 2993 6.294731 GCAGGTCTTTAAATTGTCAGGATGTT 60.295 38.462 0.00 0.00 37.40 2.71
2840 2994 7.661040 CAGGTCTTTAAATTGTCAGGATGTTT 58.339 34.615 0.00 0.00 37.40 2.83
2841 2995 7.596248 CAGGTCTTTAAATTGTCAGGATGTTTG 59.404 37.037 0.00 0.00 37.40 2.93
2842 2996 7.505585 AGGTCTTTAAATTGTCAGGATGTTTGA 59.494 33.333 0.00 0.00 37.40 2.69
2843 2997 8.141268 GGTCTTTAAATTGTCAGGATGTTTGAA 58.859 33.333 0.00 0.00 37.40 2.69
2844 2998 9.185192 GTCTTTAAATTGTCAGGATGTTTGAAG 57.815 33.333 0.00 0.00 37.40 3.02
2845 2999 7.867403 TCTTTAAATTGTCAGGATGTTTGAAGC 59.133 33.333 0.00 0.00 37.40 3.86
2846 3000 5.534207 AAATTGTCAGGATGTTTGAAGCA 57.466 34.783 0.00 0.00 37.40 3.91
2857 3058 0.106769 TTTGAAGCAGCAGGTCCACA 60.107 50.000 0.00 0.00 0.00 4.17
2864 3195 1.885887 GCAGCAGGTCCACAAATGTAA 59.114 47.619 0.00 0.00 0.00 2.41
3016 3349 2.035961 TCCTTCTTGACACTTGTCCTCG 59.964 50.000 6.91 0.00 44.15 4.63
3038 3371 6.722301 TCGTAATGAGTAGGAATGTACTTCG 58.278 40.000 0.00 0.00 33.18 3.79
3226 3771 7.912719 ACATCTAAAGTAAGGCTCTTCTCTTT 58.087 34.615 15.11 15.11 0.00 2.52
3379 3931 5.762218 AGAACCTTGAAATGTCTTCACTGAG 59.238 40.000 0.00 0.00 0.00 3.35
3633 4186 3.250744 TCAGGAAGCTACGTTTTGATCG 58.749 45.455 0.00 0.00 0.00 3.69
3753 4307 2.466846 TGCTGGGTAATAGTCTGAGCA 58.533 47.619 0.00 0.00 32.73 4.26
3774 4328 2.193536 GCGGTTGTGGCTCCTTTGT 61.194 57.895 0.00 0.00 0.00 2.83
3777 4331 1.111277 GGTTGTGGCTCCTTTGTTGT 58.889 50.000 0.00 0.00 0.00 3.32
3996 4584 0.319555 TTTCACCGAGCTTGAGGACG 60.320 55.000 1.22 0.00 0.00 4.79
4028 4617 1.736586 CTGACGGCCTAGCAGGTAG 59.263 63.158 0.00 0.00 37.80 3.18
4032 4621 1.962100 GACGGCCTAGCAGGTAGTATT 59.038 52.381 0.00 0.00 37.80 1.89
4033 4622 3.152341 GACGGCCTAGCAGGTAGTATTA 58.848 50.000 0.00 0.00 37.80 0.98
4034 4623 2.889678 ACGGCCTAGCAGGTAGTATTAC 59.110 50.000 0.00 0.00 37.80 1.89
4065 4654 0.172578 GGGTGCGTCCAAAATAAGGC 59.827 55.000 0.37 0.00 38.11 4.35
4087 4684 0.739462 CATGTACGGCCGAAGCTCAA 60.739 55.000 35.90 10.04 39.73 3.02
4100 4697 4.446371 CGAAGCTCAACCTTTGGATCTAT 58.554 43.478 0.00 0.00 0.00 1.98
4125 4723 4.910458 AGCATATACCAATACCAGTCCC 57.090 45.455 0.00 0.00 0.00 4.46
4127 4725 4.663120 AGCATATACCAATACCAGTCCCAA 59.337 41.667 0.00 0.00 0.00 4.12
4128 4726 5.003804 GCATATACCAATACCAGTCCCAAG 58.996 45.833 0.00 0.00 0.00 3.61
4129 4727 5.456186 GCATATACCAATACCAGTCCCAAGT 60.456 44.000 0.00 0.00 0.00 3.16
4130 4728 6.239772 GCATATACCAATACCAGTCCCAAGTA 60.240 42.308 0.00 0.00 0.00 2.24
4131 4729 3.994931 ACCAATACCAGTCCCAAGTAC 57.005 47.619 0.00 0.00 0.00 2.73
4132 4730 3.527937 ACCAATACCAGTCCCAAGTACT 58.472 45.455 0.00 0.00 0.00 2.73
4133 4731 3.518303 ACCAATACCAGTCCCAAGTACTC 59.482 47.826 0.00 0.00 0.00 2.59
4134 4732 3.118371 CCAATACCAGTCCCAAGTACTCC 60.118 52.174 0.00 0.00 0.00 3.85
4135 4733 2.242882 TACCAGTCCCAAGTACTCCC 57.757 55.000 0.00 0.00 0.00 4.30
4136 4734 0.492276 ACCAGTCCCAAGTACTCCCT 59.508 55.000 0.00 0.00 0.00 4.20
4137 4735 1.196012 CCAGTCCCAAGTACTCCCTC 58.804 60.000 0.00 0.00 0.00 4.30
4138 4736 1.196012 CAGTCCCAAGTACTCCCTCC 58.804 60.000 0.00 0.00 0.00 4.30
4139 4737 0.324460 AGTCCCAAGTACTCCCTCCG 60.324 60.000 0.00 0.00 0.00 4.63
4140 4738 0.614134 GTCCCAAGTACTCCCTCCGT 60.614 60.000 0.00 0.00 0.00 4.69
4141 4739 0.324091 TCCCAAGTACTCCCTCCGTC 60.324 60.000 0.00 0.00 0.00 4.79
4142 4740 1.328430 CCCAAGTACTCCCTCCGTCC 61.328 65.000 0.00 0.00 0.00 4.79
4143 4741 1.328430 CCAAGTACTCCCTCCGTCCC 61.328 65.000 0.00 0.00 0.00 4.46
4144 4742 0.613853 CAAGTACTCCCTCCGTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
4145 4743 0.115745 AAGTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
4146 4744 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
4147 4745 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
4148 4746 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
4149 4747 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
4150 4748 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
4151 4749 2.645797 ACTCCCTCCGTCCCAAAATAAA 59.354 45.455 0.00 0.00 0.00 1.40
4152 4750 3.074836 ACTCCCTCCGTCCCAAAATAAAA 59.925 43.478 0.00 0.00 0.00 1.52
4153 4751 3.423749 TCCCTCCGTCCCAAAATAAAAC 58.576 45.455 0.00 0.00 0.00 2.43
4154 4752 3.074836 TCCCTCCGTCCCAAAATAAAACT 59.925 43.478 0.00 0.00 0.00 2.66
4155 4753 4.289148 TCCCTCCGTCCCAAAATAAAACTA 59.711 41.667 0.00 0.00 0.00 2.24
4156 4754 4.638865 CCCTCCGTCCCAAAATAAAACTAG 59.361 45.833 0.00 0.00 0.00 2.57
4157 4755 5.250982 CCTCCGTCCCAAAATAAAACTAGT 58.749 41.667 0.00 0.00 0.00 2.57
4158 4756 6.408869 CCTCCGTCCCAAAATAAAACTAGTA 58.591 40.000 0.00 0.00 0.00 1.82
4159 4757 6.314648 CCTCCGTCCCAAAATAAAACTAGTAC 59.685 42.308 0.00 0.00 0.00 2.73
4160 4758 6.767456 TCCGTCCCAAAATAAAACTAGTACA 58.233 36.000 0.00 0.00 0.00 2.90
4161 4759 7.222872 TCCGTCCCAAAATAAAACTAGTACAA 58.777 34.615 0.00 0.00 0.00 2.41
4162 4760 7.718753 TCCGTCCCAAAATAAAACTAGTACAAA 59.281 33.333 0.00 0.00 0.00 2.83
4163 4761 8.019094 CCGTCCCAAAATAAAACTAGTACAAAG 58.981 37.037 0.00 0.00 0.00 2.77
4164 4762 8.562052 CGTCCCAAAATAAAACTAGTACAAAGT 58.438 33.333 0.00 0.00 0.00 2.66
4174 4772 8.788325 AAAACTAGTACAAAGTTGAGTCACTT 57.212 30.769 12.72 0.00 38.74 3.16
4175 4773 9.880157 AAAACTAGTACAAAGTTGAGTCACTTA 57.120 29.630 12.72 0.00 35.87 2.24
4180 4778 8.732746 AGTACAAAGTTGAGTCACTTATTTGT 57.267 30.769 19.63 19.63 41.03 2.83
4181 4779 9.826574 AGTACAAAGTTGAGTCACTTATTTGTA 57.173 29.630 18.31 18.31 39.39 2.41
4213 4811 9.965824 AGTACAAAGTTGAGTCATTTATTTTGG 57.034 29.630 12.94 0.78 0.00 3.28
4214 4812 9.191995 GTACAAAGTTGAGTCATTTATTTTGGG 57.808 33.333 12.94 0.00 0.00 4.12
4215 4813 8.017418 ACAAAGTTGAGTCATTTATTTTGGGA 57.983 30.769 12.94 0.00 0.00 4.37
4216 4814 8.650490 ACAAAGTTGAGTCATTTATTTTGGGAT 58.350 29.630 12.94 0.00 0.00 3.85
4217 4815 8.928733 CAAAGTTGAGTCATTTATTTTGGGATG 58.071 33.333 0.00 0.00 0.00 3.51
4218 4816 7.174107 AGTTGAGTCATTTATTTTGGGATGG 57.826 36.000 0.00 0.00 0.00 3.51
4219 4817 6.953520 AGTTGAGTCATTTATTTTGGGATGGA 59.046 34.615 0.00 0.00 0.00 3.41
4220 4818 7.123247 AGTTGAGTCATTTATTTTGGGATGGAG 59.877 37.037 0.00 0.00 0.00 3.86
4221 4819 5.893255 TGAGTCATTTATTTTGGGATGGAGG 59.107 40.000 0.00 0.00 0.00 4.30
4222 4820 5.211201 AGTCATTTATTTTGGGATGGAGGG 58.789 41.667 0.00 0.00 0.00 4.30
4223 4821 5.043432 AGTCATTTATTTTGGGATGGAGGGA 60.043 40.000 0.00 0.00 0.00 4.20
4224 4822 5.660864 GTCATTTATTTTGGGATGGAGGGAA 59.339 40.000 0.00 0.00 0.00 3.97
4231 4829 5.599048 TTTGGGATGGAGGGAATATTAGG 57.401 43.478 0.00 0.00 0.00 2.69
4319 4917 5.427157 TGAGGCCCAGTTAGTAATGTGATAA 59.573 40.000 0.00 0.00 0.00 1.75
4360 5282 8.918116 AGTGTAATGTGATACTATGTGATGACT 58.082 33.333 0.00 0.00 0.00 3.41
4378 5300 3.868661 TGACTTATCGTATTGCGTGCAAT 59.131 39.130 22.20 22.20 46.85 3.56
4509 5437 8.184192 GTGTCCATCATTTTACTCGATCATTTT 58.816 33.333 0.00 0.00 0.00 1.82
4526 5454 2.163818 TTTCGAGAAACACATCGCCT 57.836 45.000 0.00 0.00 38.79 5.52
4538 5466 3.189287 ACACATCGCCTTCACTTCATTTC 59.811 43.478 0.00 0.00 0.00 2.17
4540 5468 1.821216 TCGCCTTCACTTCATTTCCC 58.179 50.000 0.00 0.00 0.00 3.97
4563 5491 0.744771 GTGATCTCGCTCCCCCAAAC 60.745 60.000 0.00 0.00 0.00 2.93
4580 5508 8.217799 TCCCCCAAACATTCTAACATTCTATAG 58.782 37.037 0.00 0.00 0.00 1.31
4652 5580 0.536006 GTGACCTGCAAACTGAGCCT 60.536 55.000 0.00 0.00 0.00 4.58
4653 5581 1.055849 TGACCTGCAAACTGAGCCTA 58.944 50.000 0.00 0.00 0.00 3.93
4654 5582 1.002430 TGACCTGCAAACTGAGCCTAG 59.998 52.381 0.00 0.00 0.00 3.02
4655 5583 0.322008 ACCTGCAAACTGAGCCTAGC 60.322 55.000 0.00 0.00 0.00 3.42
4656 5584 0.035630 CCTGCAAACTGAGCCTAGCT 60.036 55.000 0.00 0.00 43.88 3.32
4666 5594 2.829741 GAGCCTAGCTCGGATGATTT 57.170 50.000 8.81 0.00 45.85 2.17
4667 5595 3.944055 GAGCCTAGCTCGGATGATTTA 57.056 47.619 8.81 0.00 45.85 1.40
4668 5596 3.843999 GAGCCTAGCTCGGATGATTTAG 58.156 50.000 8.81 0.00 45.85 1.85
4669 5597 3.501349 AGCCTAGCTCGGATGATTTAGA 58.499 45.455 8.81 0.00 30.62 2.10
4670 5598 4.093011 AGCCTAGCTCGGATGATTTAGAT 58.907 43.478 8.81 0.00 30.62 1.98
4671 5599 4.530161 AGCCTAGCTCGGATGATTTAGATT 59.470 41.667 8.81 0.00 30.62 2.40
4672 5600 5.012561 AGCCTAGCTCGGATGATTTAGATTT 59.987 40.000 8.81 0.00 30.62 2.17
4673 5601 5.350091 GCCTAGCTCGGATGATTTAGATTTC 59.650 44.000 8.81 0.00 0.00 2.17
4674 5602 6.696411 CCTAGCTCGGATGATTTAGATTTCT 58.304 40.000 0.00 0.00 0.00 2.52
4675 5603 7.158021 CCTAGCTCGGATGATTTAGATTTCTT 58.842 38.462 0.00 0.00 0.00 2.52
4676 5604 8.307483 CCTAGCTCGGATGATTTAGATTTCTTA 58.693 37.037 0.00 0.00 0.00 2.10
4677 5605 7.954788 AGCTCGGATGATTTAGATTTCTTAC 57.045 36.000 0.00 0.00 0.00 2.34
4678 5606 6.931840 AGCTCGGATGATTTAGATTTCTTACC 59.068 38.462 0.00 0.00 0.00 2.85
4679 5607 6.128795 GCTCGGATGATTTAGATTTCTTACCG 60.129 42.308 0.00 0.00 37.37 4.02
4680 5608 7.046292 TCGGATGATTTAGATTTCTTACCGA 57.954 36.000 0.00 0.00 41.49 4.69
4681 5609 7.145985 TCGGATGATTTAGATTTCTTACCGAG 58.854 38.462 0.00 0.00 39.48 4.63
4682 5610 6.924060 CGGATGATTTAGATTTCTTACCGAGT 59.076 38.462 0.00 0.00 38.09 4.18
4683 5611 7.115095 CGGATGATTTAGATTTCTTACCGAGTC 59.885 40.741 0.00 0.00 38.09 3.36
4707 5635 8.516234 GTCTAGCTCGGATGATTAGATTTCTTA 58.484 37.037 0.00 0.00 0.00 2.10
4708 5636 9.249053 TCTAGCTCGGATGATTAGATTTCTTAT 57.751 33.333 0.00 0.00 0.00 1.73
4709 5637 9.299963 CTAGCTCGGATGATTAGATTTCTTATG 57.700 37.037 0.00 0.00 0.00 1.90
4710 5638 7.102346 AGCTCGGATGATTAGATTTCTTATGG 58.898 38.462 0.00 0.00 0.00 2.74
4711 5639 7.038729 AGCTCGGATGATTAGATTTCTTATGGA 60.039 37.037 0.00 0.00 0.00 3.41
4712 5640 7.277539 GCTCGGATGATTAGATTTCTTATGGAG 59.722 40.741 0.00 0.00 0.00 3.86
4713 5641 8.195165 TCGGATGATTAGATTTCTTATGGAGT 57.805 34.615 0.00 0.00 0.00 3.85
4714 5642 8.307483 TCGGATGATTAGATTTCTTATGGAGTC 58.693 37.037 0.00 0.00 0.00 3.36
4715 5643 8.310382 CGGATGATTAGATTTCTTATGGAGTCT 58.690 37.037 0.00 0.00 0.00 3.24
4719 5647 9.373450 TGATTAGATTTCTTATGGAGTCTAGCT 57.627 33.333 0.00 0.00 30.41 3.32
4720 5648 9.855021 GATTAGATTTCTTATGGAGTCTAGCTC 57.145 37.037 0.00 5.83 43.39 4.09
4721 5649 6.325919 AGATTTCTTATGGAGTCTAGCTCG 57.674 41.667 0.00 0.00 45.03 5.03
4722 5650 4.920640 TTTCTTATGGAGTCTAGCTCGG 57.079 45.455 0.00 0.00 45.03 4.63
4723 5651 3.859061 TCTTATGGAGTCTAGCTCGGA 57.141 47.619 0.00 0.00 45.03 4.55
4724 5652 4.374689 TCTTATGGAGTCTAGCTCGGAT 57.625 45.455 0.00 5.75 45.03 4.18
4725 5653 4.730966 TCTTATGGAGTCTAGCTCGGATT 58.269 43.478 0.00 0.00 45.03 3.01
4726 5654 5.877491 TCTTATGGAGTCTAGCTCGGATTA 58.123 41.667 0.00 0.00 45.03 1.75
4727 5655 6.486056 TCTTATGGAGTCTAGCTCGGATTAT 58.514 40.000 0.00 0.00 45.03 1.28
4728 5656 6.948886 TCTTATGGAGTCTAGCTCGGATTATT 59.051 38.462 0.00 0.00 45.03 1.40
4729 5657 8.107729 TCTTATGGAGTCTAGCTCGGATTATTA 58.892 37.037 0.00 0.00 45.03 0.98
4730 5658 6.767524 ATGGAGTCTAGCTCGGATTATTAG 57.232 41.667 0.00 0.00 45.03 1.73
4731 5659 5.877491 TGGAGTCTAGCTCGGATTATTAGA 58.123 41.667 0.00 0.00 45.03 2.10
4732 5660 6.486056 TGGAGTCTAGCTCGGATTATTAGAT 58.514 40.000 0.00 0.00 45.03 1.98
4733 5661 6.948886 TGGAGTCTAGCTCGGATTATTAGATT 59.051 38.462 0.00 0.00 45.03 2.40
4734 5662 7.451877 TGGAGTCTAGCTCGGATTATTAGATTT 59.548 37.037 0.00 0.00 45.03 2.17
4735 5663 7.971722 GGAGTCTAGCTCGGATTATTAGATTTC 59.028 40.741 0.00 0.00 45.03 2.17
4736 5664 7.832769 AGTCTAGCTCGGATTATTAGATTTCC 58.167 38.462 0.00 0.00 0.00 3.13
4737 5665 7.672239 AGTCTAGCTCGGATTATTAGATTTCCT 59.328 37.037 0.00 0.00 0.00 3.36
4738 5666 8.958506 GTCTAGCTCGGATTATTAGATTTCCTA 58.041 37.037 0.00 0.00 0.00 2.94
4739 5667 9.702253 TCTAGCTCGGATTATTAGATTTCCTAT 57.298 33.333 0.00 0.00 0.00 2.57
4755 5683 9.343539 AGATTTCCTATAATAAAACCAGCTCAC 57.656 33.333 0.00 0.00 0.00 3.51
4756 5684 9.120538 GATTTCCTATAATAAAACCAGCTCACA 57.879 33.333 0.00 0.00 0.00 3.58
4757 5685 8.871629 TTTCCTATAATAAAACCAGCTCACAA 57.128 30.769 0.00 0.00 0.00 3.33
4758 5686 8.506168 TTCCTATAATAAAACCAGCTCACAAG 57.494 34.615 0.00 0.00 0.00 3.16
4759 5687 7.054124 TCCTATAATAAAACCAGCTCACAAGG 58.946 38.462 0.00 0.00 0.00 3.61
4760 5688 7.054124 CCTATAATAAAACCAGCTCACAAGGA 58.946 38.462 0.00 0.00 0.00 3.36
4761 5689 7.721399 CCTATAATAAAACCAGCTCACAAGGAT 59.279 37.037 0.00 0.00 0.00 3.24
4762 5690 7.961326 ATAATAAAACCAGCTCACAAGGATT 57.039 32.000 0.00 0.00 0.00 3.01
4763 5691 5.904362 ATAAAACCAGCTCACAAGGATTC 57.096 39.130 0.00 0.00 0.00 2.52
4764 5692 2.957402 AACCAGCTCACAAGGATTCA 57.043 45.000 0.00 0.00 0.00 2.57
4765 5693 2.957402 ACCAGCTCACAAGGATTCAA 57.043 45.000 0.00 0.00 0.00 2.69
4766 5694 2.787994 ACCAGCTCACAAGGATTCAAG 58.212 47.619 0.00 0.00 0.00 3.02
4767 5695 2.107204 ACCAGCTCACAAGGATTCAAGT 59.893 45.455 0.00 0.00 0.00 3.16
4768 5696 3.327757 ACCAGCTCACAAGGATTCAAGTA 59.672 43.478 0.00 0.00 0.00 2.24
4769 5697 3.686726 CCAGCTCACAAGGATTCAAGTAC 59.313 47.826 0.00 0.00 0.00 2.73
4770 5698 4.318332 CAGCTCACAAGGATTCAAGTACA 58.682 43.478 0.00 0.00 0.00 2.90
4771 5699 4.391216 CAGCTCACAAGGATTCAAGTACAG 59.609 45.833 0.00 0.00 0.00 2.74
4772 5700 4.284490 AGCTCACAAGGATTCAAGTACAGA 59.716 41.667 0.00 0.00 0.00 3.41
4773 5701 4.390297 GCTCACAAGGATTCAAGTACAGAC 59.610 45.833 0.00 0.00 0.00 3.51
4774 5702 5.788450 CTCACAAGGATTCAAGTACAGACT 58.212 41.667 0.00 0.00 37.59 3.24
4785 5713 2.688507 AGTACAGACTTGACATTGGCG 58.311 47.619 0.00 0.00 28.61 5.69
4786 5714 2.037251 AGTACAGACTTGACATTGGCGT 59.963 45.455 0.00 0.00 28.61 5.68
4787 5715 1.967319 ACAGACTTGACATTGGCGTT 58.033 45.000 0.00 0.00 0.00 4.84
4788 5716 1.873591 ACAGACTTGACATTGGCGTTC 59.126 47.619 0.00 0.00 0.00 3.95
4789 5717 1.872952 CAGACTTGACATTGGCGTTCA 59.127 47.619 0.00 0.00 0.00 3.18
4790 5718 1.873591 AGACTTGACATTGGCGTTCAC 59.126 47.619 0.00 0.00 0.00 3.18
4791 5719 0.951558 ACTTGACATTGGCGTTCACC 59.048 50.000 0.00 0.00 0.00 4.02
4792 5720 1.238439 CTTGACATTGGCGTTCACCT 58.762 50.000 0.00 0.00 0.00 4.00
4793 5721 1.608590 CTTGACATTGGCGTTCACCTT 59.391 47.619 0.00 0.00 0.00 3.50
4794 5722 1.686355 TGACATTGGCGTTCACCTTT 58.314 45.000 0.00 0.00 0.00 3.11
4795 5723 2.028130 TGACATTGGCGTTCACCTTTT 58.972 42.857 0.00 0.00 0.00 2.27
4796 5724 2.428890 TGACATTGGCGTTCACCTTTTT 59.571 40.909 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.430367 GTGGGGGCGTCAAGAACT 59.570 61.111 0.00 0.00 0.00 3.01
90 93 3.437795 CCACGAGTCGTAGGCGGT 61.438 66.667 19.43 0.00 38.32 5.68
170 173 2.567049 CTCTTCGCCGTCGAGGTT 59.433 61.111 4.18 0.00 46.34 3.50
217 220 3.782443 GTGGCGTCCCGATTCCCT 61.782 66.667 0.00 0.00 0.00 4.20
294 297 0.320697 GCGTACCTGTTCCTTGAGGT 59.679 55.000 0.00 0.00 45.01 3.85
379 382 4.889856 CATCCGCGACGATGGCCA 62.890 66.667 8.56 8.56 36.74 5.36
392 400 1.694169 TCTCTCCCCAAGCCCATCC 60.694 63.158 0.00 0.00 0.00 3.51
414 427 2.124901 CCGCCGCCAATGTTCCTA 60.125 61.111 0.00 0.00 0.00 2.94
436 454 2.681778 CTGCCTCTCTCCCCGTGT 60.682 66.667 0.00 0.00 0.00 4.49
566 591 2.309755 AGCCTTCCATTGATTCCTCACA 59.690 45.455 0.00 0.00 0.00 3.58
637 668 3.878519 CTCGCCTCGTCGTCCTCC 61.879 72.222 0.00 0.00 0.00 4.30
754 795 3.018149 TGGTTTAAGTTGAAACTGGCGT 58.982 40.909 0.00 0.00 39.66 5.68
777 819 3.727227 GCGTTTTTAGGAGGTCGTTTTTG 59.273 43.478 0.00 0.00 0.00 2.44
794 836 1.161843 AAATCGGTCCAATCGCGTTT 58.838 45.000 5.77 0.00 0.00 3.60
802 844 1.081774 CGCGCAAAAATCGGTCCAA 60.082 52.632 8.75 0.00 0.00 3.53
806 848 4.752142 CGGCGCGCAAAAATCGGT 62.752 61.111 34.42 0.00 0.00 4.69
844 886 2.821366 ATCTTCAGCCGCGCCAAG 60.821 61.111 0.00 0.00 0.00 3.61
845 887 3.126879 CATCTTCAGCCGCGCCAA 61.127 61.111 0.00 0.00 0.00 4.52
868 918 0.872881 CCTGTTTTGCAGTGCACAGC 60.873 55.000 25.69 25.69 43.55 4.40
869 919 0.740149 TCCTGTTTTGCAGTGCACAG 59.260 50.000 19.58 20.76 43.55 3.66
870 920 0.740149 CTCCTGTTTTGCAGTGCACA 59.260 50.000 19.58 9.03 43.55 4.57
871 921 1.024271 TCTCCTGTTTTGCAGTGCAC 58.976 50.000 19.58 9.40 43.55 4.57
872 922 1.677576 CTTCTCCTGTTTTGCAGTGCA 59.322 47.619 15.37 15.37 43.55 4.57
873 923 1.601412 GCTTCTCCTGTTTTGCAGTGC 60.601 52.381 8.58 8.58 43.55 4.40
874 924 1.000938 GGCTTCTCCTGTTTTGCAGTG 60.001 52.381 0.00 0.00 43.55 3.66
875 925 1.133668 AGGCTTCTCCTGTTTTGCAGT 60.134 47.619 0.00 0.00 45.54 4.40
876 926 1.613836 AGGCTTCTCCTGTTTTGCAG 58.386 50.000 0.00 0.00 45.54 4.41
877 927 2.504367 GTAGGCTTCTCCTGTTTTGCA 58.496 47.619 0.00 0.00 46.98 4.08
878 928 1.464997 CGTAGGCTTCTCCTGTTTTGC 59.535 52.381 0.00 0.00 46.98 3.68
879 929 3.040147 TCGTAGGCTTCTCCTGTTTTG 57.960 47.619 0.00 0.00 46.98 2.44
880 930 3.665190 CTTCGTAGGCTTCTCCTGTTTT 58.335 45.455 0.00 0.00 46.98 2.43
881 931 2.613223 GCTTCGTAGGCTTCTCCTGTTT 60.613 50.000 0.00 0.00 46.98 2.83
882 932 1.066787 GCTTCGTAGGCTTCTCCTGTT 60.067 52.381 0.00 0.00 46.98 3.16
883 933 0.533032 GCTTCGTAGGCTTCTCCTGT 59.467 55.000 0.00 0.00 46.98 4.00
884 934 0.179097 GGCTTCGTAGGCTTCTCCTG 60.179 60.000 8.41 0.00 46.98 3.86
886 936 1.144276 GGGCTTCGTAGGCTTCTCC 59.856 63.158 15.05 0.00 45.78 3.71
887 937 0.103390 GAGGGCTTCGTAGGCTTCTC 59.897 60.000 17.90 11.90 45.87 2.87
888 938 2.203806 GAGGGCTTCGTAGGCTTCT 58.796 57.895 17.90 7.20 45.87 2.85
889 939 4.838046 GAGGGCTTCGTAGGCTTC 57.162 61.111 15.05 13.23 45.78 3.86
890 940 0.690762 TTTGAGGGCTTCGTAGGCTT 59.309 50.000 15.05 7.80 45.78 4.35
891 941 0.690762 TTTTGAGGGCTTCGTAGGCT 59.309 50.000 15.05 0.00 45.78 4.58
892 942 1.530323 TTTTTGAGGGCTTCGTAGGC 58.470 50.000 7.09 7.09 45.78 3.93
919 969 8.446273 GCTTCTGCTTTCTTTTTCTTTTTCTTT 58.554 29.630 0.00 0.00 36.03 2.52
920 970 7.065085 GGCTTCTGCTTTCTTTTTCTTTTTCTT 59.935 33.333 0.00 0.00 39.59 2.52
921 971 6.536582 GGCTTCTGCTTTCTTTTTCTTTTTCT 59.463 34.615 0.00 0.00 39.59 2.52
922 972 6.536582 AGGCTTCTGCTTTCTTTTTCTTTTTC 59.463 34.615 0.00 0.00 39.59 2.29
923 973 6.409704 AGGCTTCTGCTTTCTTTTTCTTTTT 58.590 32.000 0.00 0.00 39.59 1.94
924 974 5.982356 AGGCTTCTGCTTTCTTTTTCTTTT 58.018 33.333 0.00 0.00 39.59 2.27
925 975 5.604758 AGGCTTCTGCTTTCTTTTTCTTT 57.395 34.783 0.00 0.00 39.59 2.52
926 976 5.278022 CGTAGGCTTCTGCTTTCTTTTTCTT 60.278 40.000 0.00 0.00 39.59 2.52
927 977 4.214332 CGTAGGCTTCTGCTTTCTTTTTCT 59.786 41.667 0.00 0.00 39.59 2.52
928 978 4.213482 TCGTAGGCTTCTGCTTTCTTTTTC 59.787 41.667 0.00 0.00 39.59 2.29
929 979 4.134563 TCGTAGGCTTCTGCTTTCTTTTT 58.865 39.130 0.00 0.00 39.59 1.94
930 980 3.740115 TCGTAGGCTTCTGCTTTCTTTT 58.260 40.909 0.00 0.00 39.59 2.27
931 981 3.006967 TCTCGTAGGCTTCTGCTTTCTTT 59.993 43.478 0.00 0.00 39.59 2.52
932 982 2.563179 TCTCGTAGGCTTCTGCTTTCTT 59.437 45.455 0.00 0.00 39.59 2.52
933 983 2.171840 TCTCGTAGGCTTCTGCTTTCT 58.828 47.619 0.00 0.00 39.59 2.52
934 984 2.656560 TCTCGTAGGCTTCTGCTTTC 57.343 50.000 0.00 0.00 39.59 2.62
935 985 2.613223 GGTTCTCGTAGGCTTCTGCTTT 60.613 50.000 0.00 0.00 39.59 3.51
936 986 1.066787 GGTTCTCGTAGGCTTCTGCTT 60.067 52.381 0.00 0.00 39.59 3.91
1150 1200 2.125106 GCAAGGGAGTACCGCTGG 60.125 66.667 0.00 1.32 46.96 4.85
1288 1338 2.092429 CCAAGTCTGCCAGGGCTTATAA 60.092 50.000 12.19 0.00 42.51 0.98
1303 1353 2.937149 GGTTTTCGCCTAGATCCAAGTC 59.063 50.000 0.00 0.00 0.00 3.01
1727 1781 3.500448 TTCCCTGCAGTGACATAACAA 57.500 42.857 13.81 0.00 0.00 2.83
1846 1900 4.640771 TGTCAAAAGGAAGCTACTCCAT 57.359 40.909 7.20 0.00 38.02 3.41
1852 1906 4.700213 GCAGGTAATGTCAAAAGGAAGCTA 59.300 41.667 0.00 0.00 0.00 3.32
2116 2172 4.080695 AGCAACTGGTCATGTGTATCAGAT 60.081 41.667 0.43 0.00 0.00 2.90
2295 2352 6.315393 ACGTAAATAAGGTCCATGACATGTTC 59.685 38.462 14.26 6.62 33.68 3.18
2296 2353 6.177610 ACGTAAATAAGGTCCATGACATGTT 58.822 36.000 14.26 4.69 33.68 2.71
2297 2354 5.741011 ACGTAAATAAGGTCCATGACATGT 58.259 37.500 14.26 0.00 33.68 3.21
2348 2408 2.252976 TTTTGCACATTTTGGGGCTC 57.747 45.000 0.00 0.00 0.00 4.70
2384 2444 7.402862 ACCACTTATAAGCAACATACTCCTTT 58.597 34.615 12.54 0.00 0.00 3.11
2410 2470 4.389687 GGTGCTTGGCAAACTCATATTTTG 59.610 41.667 0.00 0.00 41.47 2.44
2492 2640 1.344763 ACTGTCTCCTGAAGTTTCCCG 59.655 52.381 0.00 0.00 0.00 5.14
2743 2897 3.823281 AGTCAGAGATGATGGCTGAAG 57.177 47.619 0.00 0.00 40.05 3.02
2814 2968 5.183904 ACATCCTGACAATTTAAAGACCTGC 59.816 40.000 0.00 0.00 0.00 4.85
2815 2969 6.824305 ACATCCTGACAATTTAAAGACCTG 57.176 37.500 0.00 0.00 0.00 4.00
2816 2970 7.505585 TCAAACATCCTGACAATTTAAAGACCT 59.494 33.333 0.00 0.00 0.00 3.85
2817 2971 7.657336 TCAAACATCCTGACAATTTAAAGACC 58.343 34.615 0.00 0.00 0.00 3.85
2818 2972 9.185192 CTTCAAACATCCTGACAATTTAAAGAC 57.815 33.333 0.00 0.00 0.00 3.01
2819 2973 7.867403 GCTTCAAACATCCTGACAATTTAAAGA 59.133 33.333 0.00 0.00 0.00 2.52
2820 2974 7.652909 TGCTTCAAACATCCTGACAATTTAAAG 59.347 33.333 0.00 0.00 0.00 1.85
2821 2975 7.495901 TGCTTCAAACATCCTGACAATTTAAA 58.504 30.769 0.00 0.00 0.00 1.52
2822 2976 7.048629 TGCTTCAAACATCCTGACAATTTAA 57.951 32.000 0.00 0.00 0.00 1.52
2823 2977 6.647334 TGCTTCAAACATCCTGACAATTTA 57.353 33.333 0.00 0.00 0.00 1.40
2824 2978 5.534207 TGCTTCAAACATCCTGACAATTT 57.466 34.783 0.00 0.00 0.00 1.82
2825 2979 4.560108 GCTGCTTCAAACATCCTGACAATT 60.560 41.667 0.00 0.00 0.00 2.32
2826 2980 3.057033 GCTGCTTCAAACATCCTGACAAT 60.057 43.478 0.00 0.00 0.00 2.71
2827 2981 2.294233 GCTGCTTCAAACATCCTGACAA 59.706 45.455 0.00 0.00 0.00 3.18
2828 2982 1.881973 GCTGCTTCAAACATCCTGACA 59.118 47.619 0.00 0.00 0.00 3.58
2829 2983 1.881973 TGCTGCTTCAAACATCCTGAC 59.118 47.619 0.00 0.00 0.00 3.51
2830 2984 2.156917 CTGCTGCTTCAAACATCCTGA 58.843 47.619 0.00 0.00 0.00 3.86
2831 2985 1.201647 CCTGCTGCTTCAAACATCCTG 59.798 52.381 0.00 0.00 0.00 3.86
2832 2986 1.202976 ACCTGCTGCTTCAAACATCCT 60.203 47.619 0.00 0.00 0.00 3.24
2833 2987 1.200948 GACCTGCTGCTTCAAACATCC 59.799 52.381 0.00 0.00 0.00 3.51
2834 2988 1.200948 GGACCTGCTGCTTCAAACATC 59.799 52.381 0.00 0.00 0.00 3.06
2835 2989 1.251251 GGACCTGCTGCTTCAAACAT 58.749 50.000 0.00 0.00 0.00 2.71
2836 2990 0.106769 TGGACCTGCTGCTTCAAACA 60.107 50.000 0.00 0.00 0.00 2.83
2837 2991 0.312102 GTGGACCTGCTGCTTCAAAC 59.688 55.000 0.00 0.00 0.00 2.93
2838 2992 0.106769 TGTGGACCTGCTGCTTCAAA 60.107 50.000 0.00 0.00 0.00 2.69
2839 2993 0.106769 TTGTGGACCTGCTGCTTCAA 60.107 50.000 0.00 0.00 0.00 2.69
2840 2994 0.106769 TTTGTGGACCTGCTGCTTCA 60.107 50.000 0.00 0.00 0.00 3.02
2841 2995 1.068055 CATTTGTGGACCTGCTGCTTC 60.068 52.381 0.00 0.00 0.00 3.86
2842 2996 0.963962 CATTTGTGGACCTGCTGCTT 59.036 50.000 0.00 0.00 0.00 3.91
2843 2997 0.178981 ACATTTGTGGACCTGCTGCT 60.179 50.000 0.00 0.00 0.00 4.24
2844 2998 1.533625 TACATTTGTGGACCTGCTGC 58.466 50.000 0.00 0.00 0.00 5.25
2845 2999 4.789012 AATTACATTTGTGGACCTGCTG 57.211 40.909 0.00 0.00 0.00 4.41
2846 3000 4.832266 TGAAATTACATTTGTGGACCTGCT 59.168 37.500 0.00 0.00 31.47 4.24
2857 3058 3.758554 AGAGTGGCGCTGAAATTACATTT 59.241 39.130 4.71 0.00 34.64 2.32
2864 3195 3.550437 AATAGAGAGTGGCGCTGAAAT 57.450 42.857 4.71 0.00 0.00 2.17
3016 3349 5.690857 GCCGAAGTACATTCCTACTCATTAC 59.309 44.000 0.00 0.00 34.10 1.89
3038 3371 4.718940 AAGGTAGCAAAACATGTATGCC 57.281 40.909 24.90 14.85 40.93 4.40
3279 3825 6.683974 AGGAATCGTGAAAATAATGAGGTG 57.316 37.500 0.00 0.00 0.00 4.00
3329 3881 2.038557 TGGAACTGGTTTGAGGCTCTAC 59.961 50.000 16.72 13.16 0.00 2.59
3334 3886 2.693074 TCTTTTGGAACTGGTTTGAGGC 59.307 45.455 0.00 0.00 0.00 4.70
3379 3931 2.538512 AAACCGTAGACCCAACTCAC 57.461 50.000 0.00 0.00 0.00 3.51
3455 4008 9.973450 GCTATGAATCATAAGAGAACAGAAGTA 57.027 33.333 4.37 0.00 0.00 2.24
3553 4106 5.578727 CACTTACTGTTGTCTGAGGCTTATC 59.421 44.000 0.00 0.00 0.00 1.75
3633 4186 8.514594 TCTTTCACATTTTACTGGATGAATCAC 58.485 33.333 0.00 0.00 0.00 3.06
3753 4307 0.328258 AAAGGAGCCACAACCGCTAT 59.672 50.000 0.00 0.00 36.48 2.97
3774 4328 2.076100 CTCGGCAAACAGATAGCACAA 58.924 47.619 0.00 0.00 0.00 3.33
3777 4331 1.275010 TGTCTCGGCAAACAGATAGCA 59.725 47.619 0.00 0.00 0.00 3.49
4011 4599 0.256752 TACTACCTGCTAGGCCGTCA 59.743 55.000 0.00 0.00 39.63 4.35
4028 4617 4.504858 CACCCACCTCTTCACTGTAATAC 58.495 47.826 0.00 0.00 0.00 1.89
4032 4621 0.685097 GCACCCACCTCTTCACTGTA 59.315 55.000 0.00 0.00 0.00 2.74
4033 4622 1.451936 GCACCCACCTCTTCACTGT 59.548 57.895 0.00 0.00 0.00 3.55
4034 4623 1.669115 CGCACCCACCTCTTCACTG 60.669 63.158 0.00 0.00 0.00 3.66
4087 4684 8.322091 GGTATATGCTACAATAGATCCAAAGGT 58.678 37.037 0.00 0.00 0.00 3.50
4100 4697 6.239772 GGGACTGGTATTGGTATATGCTACAA 60.240 42.308 0.00 0.00 0.00 2.41
4125 4723 0.613853 TGGGACGGAGGGAGTACTTG 60.614 60.000 0.00 0.00 0.00 3.16
4127 4725 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
4128 4726 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
4129 4727 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
4130 4728 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
4131 4729 3.359695 TTTATTTTGGGACGGAGGGAG 57.640 47.619 0.00 0.00 0.00 4.30
4132 4730 3.074836 AGTTTTATTTTGGGACGGAGGGA 59.925 43.478 0.00 0.00 0.00 4.20
4133 4731 3.427573 AGTTTTATTTTGGGACGGAGGG 58.572 45.455 0.00 0.00 0.00 4.30
4134 4732 5.250982 ACTAGTTTTATTTTGGGACGGAGG 58.749 41.667 0.00 0.00 0.00 4.30
4135 4733 6.875195 TGTACTAGTTTTATTTTGGGACGGAG 59.125 38.462 0.00 0.00 0.00 4.63
4136 4734 6.767456 TGTACTAGTTTTATTTTGGGACGGA 58.233 36.000 0.00 0.00 0.00 4.69
4137 4735 7.437793 TTGTACTAGTTTTATTTTGGGACGG 57.562 36.000 0.00 0.00 0.00 4.79
4138 4736 8.562052 ACTTTGTACTAGTTTTATTTTGGGACG 58.438 33.333 0.00 0.00 0.00 4.79
4148 4746 9.880157 AAGTGACTCAACTTTGTACTAGTTTTA 57.120 29.630 0.00 3.52 37.05 1.52
4149 4747 8.788325 AAGTGACTCAACTTTGTACTAGTTTT 57.212 30.769 0.00 1.05 37.05 2.43
4154 4752 9.826574 ACAAATAAGTGACTCAACTTTGTACTA 57.173 29.630 10.82 0.00 40.77 1.82
4155 4753 8.732746 ACAAATAAGTGACTCAACTTTGTACT 57.267 30.769 10.82 0.00 40.77 2.73
4187 4785 9.965824 CCAAAATAAATGACTCAACTTTGTACT 57.034 29.630 0.00 0.00 0.00 2.73
4188 4786 9.191995 CCCAAAATAAATGACTCAACTTTGTAC 57.808 33.333 0.00 0.00 0.00 2.90
4189 4787 9.137459 TCCCAAAATAAATGACTCAACTTTGTA 57.863 29.630 0.00 0.00 0.00 2.41
4190 4788 8.017418 TCCCAAAATAAATGACTCAACTTTGT 57.983 30.769 0.00 0.00 0.00 2.83
4191 4789 8.928733 CATCCCAAAATAAATGACTCAACTTTG 58.071 33.333 0.00 0.00 0.00 2.77
4192 4790 8.096414 CCATCCCAAAATAAATGACTCAACTTT 58.904 33.333 0.00 0.00 0.00 2.66
4193 4791 7.454380 TCCATCCCAAAATAAATGACTCAACTT 59.546 33.333 0.00 0.00 0.00 2.66
4194 4792 6.953520 TCCATCCCAAAATAAATGACTCAACT 59.046 34.615 0.00 0.00 0.00 3.16
4195 4793 7.169158 TCCATCCCAAAATAAATGACTCAAC 57.831 36.000 0.00 0.00 0.00 3.18
4196 4794 6.380846 CCTCCATCCCAAAATAAATGACTCAA 59.619 38.462 0.00 0.00 0.00 3.02
4197 4795 5.893255 CCTCCATCCCAAAATAAATGACTCA 59.107 40.000 0.00 0.00 0.00 3.41
4198 4796 5.302823 CCCTCCATCCCAAAATAAATGACTC 59.697 44.000 0.00 0.00 0.00 3.36
4199 4797 5.043432 TCCCTCCATCCCAAAATAAATGACT 60.043 40.000 0.00 0.00 0.00 3.41
4200 4798 5.208121 TCCCTCCATCCCAAAATAAATGAC 58.792 41.667 0.00 0.00 0.00 3.06
4201 4799 5.480058 TCCCTCCATCCCAAAATAAATGA 57.520 39.130 0.00 0.00 0.00 2.57
4202 4800 6.752285 ATTCCCTCCATCCCAAAATAAATG 57.248 37.500 0.00 0.00 0.00 2.32
4204 4802 9.600432 CTAATATTCCCTCCATCCCAAAATAAA 57.400 33.333 0.00 0.00 0.00 1.40
4205 4803 8.176780 CCTAATATTCCCTCCATCCCAAAATAA 58.823 37.037 0.00 0.00 0.00 1.40
4206 4804 7.257751 CCCTAATATTCCCTCCATCCCAAAATA 60.258 40.741 0.00 0.00 0.00 1.40
4207 4805 6.470717 CCCTAATATTCCCTCCATCCCAAAAT 60.471 42.308 0.00 0.00 0.00 1.82
4208 4806 5.162881 CCCTAATATTCCCTCCATCCCAAAA 60.163 44.000 0.00 0.00 0.00 2.44
4209 4807 4.356794 CCCTAATATTCCCTCCATCCCAAA 59.643 45.833 0.00 0.00 0.00 3.28
4210 4808 3.922778 CCCTAATATTCCCTCCATCCCAA 59.077 47.826 0.00 0.00 0.00 4.12
4211 4809 3.541548 CCCTAATATTCCCTCCATCCCA 58.458 50.000 0.00 0.00 0.00 4.37
4212 4810 2.853077 CCCCTAATATTCCCTCCATCCC 59.147 54.545 0.00 0.00 0.00 3.85
4213 4811 3.523972 GACCCCTAATATTCCCTCCATCC 59.476 52.174 0.00 0.00 0.00 3.51
4214 4812 3.197983 CGACCCCTAATATTCCCTCCATC 59.802 52.174 0.00 0.00 0.00 3.51
4215 4813 3.181399 TCGACCCCTAATATTCCCTCCAT 60.181 47.826 0.00 0.00 0.00 3.41
4216 4814 2.180529 TCGACCCCTAATATTCCCTCCA 59.819 50.000 0.00 0.00 0.00 3.86
4217 4815 2.566279 GTCGACCCCTAATATTCCCTCC 59.434 54.545 3.51 0.00 0.00 4.30
4218 4816 2.566279 GGTCGACCCCTAATATTCCCTC 59.434 54.545 24.75 0.00 0.00 4.30
4219 4817 2.181642 AGGTCGACCCCTAATATTCCCT 59.818 50.000 30.82 4.52 36.42 4.20
4220 4818 2.566279 GAGGTCGACCCCTAATATTCCC 59.434 54.545 30.82 0.86 34.03 3.97
4221 4819 3.258622 CAGAGGTCGACCCCTAATATTCC 59.741 52.174 30.82 1.09 34.03 3.01
4222 4820 3.306156 GCAGAGGTCGACCCCTAATATTC 60.306 52.174 30.82 18.38 34.03 1.75
4223 4821 2.633481 GCAGAGGTCGACCCCTAATATT 59.367 50.000 30.82 9.91 34.03 1.28
4224 4822 2.158295 AGCAGAGGTCGACCCCTAATAT 60.158 50.000 30.82 10.74 34.03 1.28
4231 4829 0.951040 CACAAAGCAGAGGTCGACCC 60.951 60.000 30.82 21.26 36.42 4.46
4245 4843 0.257328 TGTGGAGTGGAAGGCACAAA 59.743 50.000 0.00 0.00 0.00 2.83
4319 4917 6.038050 CACATTACACTTGCCCAAAACAAAAT 59.962 34.615 0.00 0.00 0.00 1.82
4328 4926 4.568072 AGTATCACATTACACTTGCCCA 57.432 40.909 0.00 0.00 0.00 5.36
4360 5282 6.017852 TCCATTTATTGCACGCAATACGATAA 60.018 34.615 21.03 14.15 45.23 1.75
4378 5300 6.156602 AGTGGGATTTGATTTGCATCCATTTA 59.843 34.615 2.86 0.00 38.66 1.40
4442 5370 5.126384 CACAGGGGTTGAACAGAAACTTTTA 59.874 40.000 0.00 0.00 0.00 1.52
4509 5437 1.000394 TGAAGGCGATGTGTTTCTCGA 60.000 47.619 0.00 0.00 37.05 4.04
4540 5468 3.917760 GGGAGCGAGATCACGGGG 61.918 72.222 14.41 0.00 0.00 5.73
4604 5532 6.989169 GCACCTCTGAATTGTATAGAATGTCT 59.011 38.462 0.00 0.00 0.00 3.41
4605 5533 6.763135 TGCACCTCTGAATTGTATAGAATGTC 59.237 38.462 0.00 0.00 0.00 3.06
4606 5534 6.653020 TGCACCTCTGAATTGTATAGAATGT 58.347 36.000 0.00 0.00 0.00 2.71
4607 5535 7.359849 CGATGCACCTCTGAATTGTATAGAATG 60.360 40.741 0.00 0.00 0.00 2.67
4608 5536 6.648310 CGATGCACCTCTGAATTGTATAGAAT 59.352 38.462 0.00 0.00 0.00 2.40
4610 5538 5.069119 ACGATGCACCTCTGAATTGTATAGA 59.931 40.000 0.00 0.00 0.00 1.98
4611 5539 5.176406 CACGATGCACCTCTGAATTGTATAG 59.824 44.000 0.00 0.00 0.00 1.31
4625 5553 2.358615 TGCAGGTCACGATGCACC 60.359 61.111 2.29 0.00 46.97 5.01
4652 5580 8.088981 GGTAAGAAATCTAAATCATCCGAGCTA 58.911 37.037 0.00 0.00 0.00 3.32
4653 5581 6.931840 GGTAAGAAATCTAAATCATCCGAGCT 59.068 38.462 0.00 0.00 0.00 4.09
4654 5582 6.128795 CGGTAAGAAATCTAAATCATCCGAGC 60.129 42.308 0.00 0.00 35.94 5.03
4655 5583 7.145985 TCGGTAAGAAATCTAAATCATCCGAG 58.854 38.462 0.00 0.00 37.60 4.63
4656 5584 7.046292 TCGGTAAGAAATCTAAATCATCCGA 57.954 36.000 0.00 0.00 39.62 4.55
4657 5585 6.924060 ACTCGGTAAGAAATCTAAATCATCCG 59.076 38.462 0.00 0.00 35.35 4.18
4658 5586 8.145122 AGACTCGGTAAGAAATCTAAATCATCC 58.855 37.037 0.00 0.00 0.00 3.51
4661 5589 8.136165 GCTAGACTCGGTAAGAAATCTAAATCA 58.864 37.037 0.00 0.00 30.60 2.57
4662 5590 8.354426 AGCTAGACTCGGTAAGAAATCTAAATC 58.646 37.037 0.00 0.00 30.60 2.17
4663 5591 8.240267 AGCTAGACTCGGTAAGAAATCTAAAT 57.760 34.615 0.00 0.00 30.60 1.40
4664 5592 7.642082 AGCTAGACTCGGTAAGAAATCTAAA 57.358 36.000 0.00 0.00 30.60 1.85
4665 5593 7.261829 GAGCTAGACTCGGTAAGAAATCTAA 57.738 40.000 0.00 0.00 35.18 2.10
4666 5594 6.864360 GAGCTAGACTCGGTAAGAAATCTA 57.136 41.667 0.00 0.00 35.18 1.98
4667 5595 5.761165 GAGCTAGACTCGGTAAGAAATCT 57.239 43.478 0.00 0.00 35.18 2.40
4679 5607 6.509418 AATCTAATCATCCGAGCTAGACTC 57.491 41.667 0.00 0.00 42.47 3.36
4680 5608 6.719370 AGAAATCTAATCATCCGAGCTAGACT 59.281 38.462 0.00 0.00 0.00 3.24
4681 5609 6.919721 AGAAATCTAATCATCCGAGCTAGAC 58.080 40.000 0.00 0.00 0.00 2.59
4682 5610 7.531857 AAGAAATCTAATCATCCGAGCTAGA 57.468 36.000 0.00 0.00 0.00 2.43
4683 5611 9.299963 CATAAGAAATCTAATCATCCGAGCTAG 57.700 37.037 0.00 0.00 0.00 3.42
4695 5623 8.519526 CGAGCTAGACTCCATAAGAAATCTAAT 58.480 37.037 0.00 0.00 43.01 1.73
4707 5635 6.486056 TCTAATAATCCGAGCTAGACTCCAT 58.514 40.000 0.00 0.00 43.01 3.41
4708 5636 5.877491 TCTAATAATCCGAGCTAGACTCCA 58.123 41.667 0.00 0.00 43.01 3.86
4709 5637 7.399245 AATCTAATAATCCGAGCTAGACTCC 57.601 40.000 0.00 0.00 43.01 3.85
4710 5638 7.971722 GGAAATCTAATAATCCGAGCTAGACTC 59.028 40.741 0.00 0.00 42.47 3.36
4711 5639 7.672239 AGGAAATCTAATAATCCGAGCTAGACT 59.328 37.037 0.00 0.00 37.05 3.24
4712 5640 7.832769 AGGAAATCTAATAATCCGAGCTAGAC 58.167 38.462 0.00 0.00 37.05 2.59
4713 5641 9.702253 ATAGGAAATCTAATAATCCGAGCTAGA 57.298 33.333 0.00 0.00 37.05 2.43
4729 5657 9.343539 GTGAGCTGGTTTTATTATAGGAAATCT 57.656 33.333 0.00 0.00 0.00 2.40
4730 5658 9.120538 TGTGAGCTGGTTTTATTATAGGAAATC 57.879 33.333 0.00 0.00 0.00 2.17
4731 5659 9.474313 TTGTGAGCTGGTTTTATTATAGGAAAT 57.526 29.630 0.00 0.00 0.00 2.17
4732 5660 8.871629 TTGTGAGCTGGTTTTATTATAGGAAA 57.128 30.769 0.00 0.00 0.00 3.13
4733 5661 7.556275 CCTTGTGAGCTGGTTTTATTATAGGAA 59.444 37.037 0.00 0.00 0.00 3.36
4734 5662 7.054124 CCTTGTGAGCTGGTTTTATTATAGGA 58.946 38.462 0.00 0.00 0.00 2.94
4735 5663 7.054124 TCCTTGTGAGCTGGTTTTATTATAGG 58.946 38.462 0.00 0.00 0.00 2.57
4736 5664 8.682936 ATCCTTGTGAGCTGGTTTTATTATAG 57.317 34.615 0.00 0.00 0.00 1.31
4737 5665 9.120538 GAATCCTTGTGAGCTGGTTTTATTATA 57.879 33.333 0.00 0.00 0.00 0.98
4738 5666 7.615365 TGAATCCTTGTGAGCTGGTTTTATTAT 59.385 33.333 0.00 0.00 0.00 1.28
4739 5667 6.945435 TGAATCCTTGTGAGCTGGTTTTATTA 59.055 34.615 0.00 0.00 0.00 0.98
4740 5668 5.774690 TGAATCCTTGTGAGCTGGTTTTATT 59.225 36.000 0.00 0.00 0.00 1.40
4741 5669 5.324409 TGAATCCTTGTGAGCTGGTTTTAT 58.676 37.500 0.00 0.00 0.00 1.40
4742 5670 4.724399 TGAATCCTTGTGAGCTGGTTTTA 58.276 39.130 0.00 0.00 0.00 1.52
4743 5671 3.565307 TGAATCCTTGTGAGCTGGTTTT 58.435 40.909 0.00 0.00 0.00 2.43
4744 5672 3.228188 TGAATCCTTGTGAGCTGGTTT 57.772 42.857 0.00 0.00 0.00 3.27
4745 5673 2.957402 TGAATCCTTGTGAGCTGGTT 57.043 45.000 0.00 0.00 0.00 3.67
4746 5674 2.107204 ACTTGAATCCTTGTGAGCTGGT 59.893 45.455 0.00 0.00 0.00 4.00
4747 5675 2.787994 ACTTGAATCCTTGTGAGCTGG 58.212 47.619 0.00 0.00 0.00 4.85
4748 5676 4.318332 TGTACTTGAATCCTTGTGAGCTG 58.682 43.478 0.00 0.00 0.00 4.24
4749 5677 4.284490 TCTGTACTTGAATCCTTGTGAGCT 59.716 41.667 0.00 0.00 0.00 4.09
4750 5678 4.390297 GTCTGTACTTGAATCCTTGTGAGC 59.610 45.833 0.00 0.00 0.00 4.26
4751 5679 5.788450 AGTCTGTACTTGAATCCTTGTGAG 58.212 41.667 0.00 0.00 29.00 3.51
4752 5680 5.808366 AGTCTGTACTTGAATCCTTGTGA 57.192 39.130 0.00 0.00 29.00 3.58
4765 5693 2.037251 ACGCCAATGTCAAGTCTGTACT 59.963 45.455 0.00 0.00 37.65 2.73
4766 5694 2.413837 ACGCCAATGTCAAGTCTGTAC 58.586 47.619 0.00 0.00 0.00 2.90
4767 5695 2.831685 ACGCCAATGTCAAGTCTGTA 57.168 45.000 0.00 0.00 0.00 2.74
4768 5696 1.873591 GAACGCCAATGTCAAGTCTGT 59.126 47.619 0.00 0.00 0.00 3.41
4769 5697 1.872952 TGAACGCCAATGTCAAGTCTG 59.127 47.619 0.00 0.00 0.00 3.51
4770 5698 1.873591 GTGAACGCCAATGTCAAGTCT 59.126 47.619 0.00 0.00 0.00 3.24
4771 5699 1.069227 GGTGAACGCCAATGTCAAGTC 60.069 52.381 0.00 0.00 0.00 3.01
4772 5700 0.951558 GGTGAACGCCAATGTCAAGT 59.048 50.000 0.00 0.00 0.00 3.16
4773 5701 1.238439 AGGTGAACGCCAATGTCAAG 58.762 50.000 7.16 0.00 0.00 3.02
4774 5702 1.686355 AAGGTGAACGCCAATGTCAA 58.314 45.000 7.16 0.00 0.00 3.18
4775 5703 1.686355 AAAGGTGAACGCCAATGTCA 58.314 45.000 7.16 0.00 0.00 3.58
4776 5704 2.793278 AAAAGGTGAACGCCAATGTC 57.207 45.000 7.16 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.