Multiple sequence alignment - TraesCS3D01G232700
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS3D01G232700
chr3D
100.000
3692
0
0
1
3692
320504227
320507918
0.000000e+00
6818.0
1
TraesCS3D01G232700
chr3D
86.508
126
16
1
3127
3252
589208740
589208616
1.790000e-28
137.0
2
TraesCS3D01G232700
chr3B
94.349
3150
115
36
1
3125
399902994
399899883
0.000000e+00
4772.0
3
TraesCS3D01G232700
chr3B
91.262
412
34
2
3282
3692
399899495
399899085
8.950000e-156
560.0
4
TraesCS3D01G232700
chr3B
87.097
124
15
1
3129
3252
368115420
368115298
4.970000e-29
139.0
5
TraesCS3D01G232700
chr3B
95.775
71
3
0
3514
3584
816745979
816745909
8.380000e-22
115.0
6
TraesCS3D01G232700
chr3B
95.775
71
3
0
3514
3584
828948185
828948115
8.380000e-22
115.0
7
TraesCS3D01G232700
chr3A
94.632
2869
111
25
19
2867
405627863
405625018
0.000000e+00
4405.0
8
TraesCS3D01G232700
chr3A
88.318
214
25
0
3251
3464
405624624
405624411
1.320000e-64
257.0
9
TraesCS3D01G232700
chr3A
88.776
98
10
1
3155
3252
340901856
340901952
6.480000e-23
119.0
10
TraesCS3D01G232700
chr3A
87.379
103
7
5
2860
2961
156232080
156231983
3.010000e-21
113.0
11
TraesCS3D01G232700
chr3A
96.154
52
2
0
3533
3584
746143891
746143840
6.570000e-13
86.1
12
TraesCS3D01G232700
chr5A
93.452
168
11
0
2260
2427
573988380
573988213
2.200000e-62
250.0
13
TraesCS3D01G232700
chr7B
87.692
130
15
1
3126
3255
482820021
482819893
2.300000e-32
150.0
14
TraesCS3D01G232700
chr7B
87.736
106
7
4
2857
2961
419041380
419041480
6.480000e-23
119.0
15
TraesCS3D01G232700
chr7B
94.118
68
4
0
3511
3578
720322031
720322098
1.810000e-18
104.0
16
TraesCS3D01G232700
chr6A
85.714
126
17
1
3126
3251
201366865
201366989
8.320000e-27
132.0
17
TraesCS3D01G232700
chr7A
88.571
105
8
2
2857
2961
466252974
466253074
1.390000e-24
124.0
18
TraesCS3D01G232700
chr7A
85.185
108
12
1
2860
2967
138008555
138008452
1.400000e-19
108.0
19
TraesCS3D01G232700
chr4D
89.109
101
7
3
2860
2960
482704210
482704114
5.010000e-24
122.0
20
TraesCS3D01G232700
chr4B
88.119
101
8
3
2860
2960
612274927
612274831
2.330000e-22
117.0
21
TraesCS3D01G232700
chr4B
87.500
104
9
3
2857
2960
621424693
621424792
2.330000e-22
117.0
22
TraesCS3D01G232700
chr4B
92.958
71
5
0
3514
3584
624645798
624645728
1.810000e-18
104.0
23
TraesCS3D01G232700
chr7D
86.538
104
8
4
2857
2959
407855877
407855975
3.900000e-20
110.0
24
TraesCS3D01G232700
chr5D
89.189
74
3
1
3511
3584
195563302
195563370
1.830000e-13
87.9
25
TraesCS3D01G232700
chr4A
89.831
59
5
1
3193
3251
626689369
626689426
1.420000e-09
75.0
26
TraesCS3D01G232700
chr2D
96.875
32
1
0
3222
3253
459810477
459810446
2.000000e-03
54.7
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS3D01G232700
chr3D
320504227
320507918
3691
False
6818
6818
100.0000
1
3692
1
chr3D.!!$F1
3691
1
TraesCS3D01G232700
chr3B
399899085
399902994
3909
True
2666
4772
92.8055
1
3692
2
chr3B.!!$R4
3691
2
TraesCS3D01G232700
chr3A
405624411
405627863
3452
True
2331
4405
91.4750
19
3464
2
chr3A.!!$R3
3445
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
513
522
1.06861
CGCAAAATGTGTGGTACAGGG
60.069
52.381
0.00
0.0
43.80
4.45
F
1179
1204
0.40404
GATGGGTGTGGTTCCCTCAA
59.596
55.000
2.65
0.0
44.84
3.02
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2196
2221
0.253894
TGTCCCTGTCGTCGGAGATA
59.746
55.0
0.0
0.0
40.67
1.98
R
3149
3428
0.035458
ACTGACCTAACTGCACCTGC
59.965
55.0
0.0
0.0
42.50
4.85
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
83
84
4.990426
GTGAACCCATTTCAATGAAGTTGG
59.010
41.667
15.82
15.82
46.09
3.77
188
189
6.321181
AGAAATAGTCAAAAGCCACAAACTCA
59.679
34.615
0.00
0.00
0.00
3.41
301
309
1.489230
GAAAAGGAGGATAAGCCCCGA
59.511
52.381
0.00
0.00
37.37
5.14
307
315
2.595238
GAGGATAAGCCCCGACTTCTA
58.405
52.381
0.00
0.00
37.37
2.10
315
323
1.390565
CCCCGACTTCTACATCGAGT
58.609
55.000
0.00
0.00
40.86
4.18
316
324
2.569059
CCCCGACTTCTACATCGAGTA
58.431
52.381
0.00
0.00
40.86
2.59
325
333
6.084925
ACTTCTACATCGAGTAAGTTTCACG
58.915
40.000
0.00
0.00
30.92
4.35
513
522
1.068610
CGCAAAATGTGTGGTACAGGG
60.069
52.381
0.00
0.00
43.80
4.45
522
531
1.142060
TGTGGTACAGGGTTGTTGGAG
59.858
52.381
0.00
0.00
41.80
3.86
556
565
1.133976
CATTCGAGATCCAAAGGCCCT
60.134
52.381
0.00
0.00
0.00
5.19
633
642
1.888512
CAAGGTCTTGGGGTTGACATG
59.111
52.381
2.94
0.00
36.95
3.21
639
648
2.571653
TCTTGGGGTTGACATGGTAGAG
59.428
50.000
0.00
0.00
0.00
2.43
641
650
1.286248
GGGGTTGACATGGTAGAGGT
58.714
55.000
0.00
0.00
0.00
3.85
735
754
6.134055
TCTTGCGGGGCATATAGTAGTATAT
58.866
40.000
4.50
4.50
38.76
0.86
778
797
8.624776
CAAAGGTCAGAAAGTTGACTAATTCTT
58.375
33.333
6.17
0.00
45.32
2.52
865
884
4.467438
ACTCATATGGGTGCATGATCGATA
59.533
41.667
7.64
0.00
31.05
2.92
926
945
1.870993
CGCATCTGCATAGCTAGCACA
60.871
52.381
18.83
8.45
42.21
4.57
1117
1142
2.017782
CCTTCGCTCTAGACACTGCTA
58.982
52.381
0.00
0.00
0.00
3.49
1179
1204
0.404040
GATGGGTGTGGTTCCCTCAA
59.596
55.000
2.65
0.00
44.84
3.02
1191
1216
0.536460
TCCCTCAACCTTTCAACCGC
60.536
55.000
0.00
0.00
0.00
5.68
1212
1237
2.673368
CAATTACTCCACCACGAGCTTC
59.327
50.000
0.00
0.00
32.79
3.86
1899
1924
2.702788
TACGCACCGATTCGCTGGA
61.703
57.895
0.00
0.00
0.00
3.86
2059
2084
2.685380
CCTTCCTCCCGTGGCTCT
60.685
66.667
0.00
0.00
0.00
4.09
2400
2425
0.247460
TCCTGTCGTTCCTGATGCAG
59.753
55.000
0.00
0.00
0.00
4.41
2490
2515
0.745845
GAGCCATGGTGACGAGCAAT
60.746
55.000
14.67
0.00
32.09
3.56
2784
2815
8.739972
ACTAAATCAGCTACACTTTATTTTGGG
58.260
33.333
0.00
0.00
0.00
4.12
2794
2825
5.714806
ACACTTTATTTTGGGACGGAATGAT
59.285
36.000
0.00
0.00
0.00
2.45
2869
2902
5.006896
TGGAGTTCTAAGTACTTCCTCCA
57.993
43.478
26.43
26.43
43.40
3.86
2871
2904
6.023603
TGGAGTTCTAAGTACTTCCTCCATT
58.976
40.000
26.43
7.86
41.41
3.16
2876
2909
6.945636
TCTAAGTACTTCCTCCATTCCAAA
57.054
37.500
12.39
0.00
0.00
3.28
2894
2927
8.971321
CATTCCAAAATAAGTGTCTCAACTTTG
58.029
33.333
0.00
0.00
40.77
2.77
2895
2928
7.639113
TCCAAAATAAGTGTCTCAACTTTGT
57.361
32.000
0.00
0.00
40.77
2.83
2896
2929
8.740123
TCCAAAATAAGTGTCTCAACTTTGTA
57.260
30.769
0.00
0.00
40.77
2.41
2897
2930
8.617809
TCCAAAATAAGTGTCTCAACTTTGTAC
58.382
33.333
0.00
0.00
40.77
2.90
2898
2931
7.586300
CCAAAATAAGTGTCTCAACTTTGTACG
59.414
37.037
0.00
0.00
40.77
3.67
2905
2938
7.483307
AGTGTCTCAACTTTGTACGTACTAAA
58.517
34.615
25.12
20.21
0.00
1.85
2937
2970
5.485662
AAGTTGTGCTAAGTTTGAGACAC
57.514
39.130
0.00
0.00
0.00
3.67
2949
2982
7.923414
AAGTTTGAGACACTTATATTGGGAC
57.077
36.000
0.00
0.00
32.48
4.46
2958
2991
4.101119
CACTTATATTGGGACGGAGGAAGT
59.899
45.833
0.00
0.00
0.00
3.01
2959
2992
5.303589
CACTTATATTGGGACGGAGGAAGTA
59.696
44.000
0.00
0.00
0.00
2.24
2964
2997
1.006758
TGGGACGGAGGAAGTATGTCT
59.993
52.381
0.00
0.00
0.00
3.41
3035
3314
5.708736
TCTAGATTCTCTGACTCCTCTGT
57.291
43.478
0.00
0.00
0.00
3.41
3049
3328
7.708051
TGACTCCTCTGTTAGAAATCTATTCG
58.292
38.462
0.00
0.00
0.00
3.34
3120
3399
4.234550
AGATGATATTGCTAGGGTGTGGA
58.765
43.478
0.00
0.00
0.00
4.02
3121
3400
4.660303
AGATGATATTGCTAGGGTGTGGAA
59.340
41.667
0.00
0.00
0.00
3.53
3122
3401
4.853468
TGATATTGCTAGGGTGTGGAAA
57.147
40.909
0.00
0.00
0.00
3.13
3123
3402
4.780815
TGATATTGCTAGGGTGTGGAAAG
58.219
43.478
0.00
0.00
0.00
2.62
3124
3403
4.473196
TGATATTGCTAGGGTGTGGAAAGA
59.527
41.667
0.00
0.00
0.00
2.52
3125
3404
2.859165
TTGCTAGGGTGTGGAAAGAG
57.141
50.000
0.00
0.00
0.00
2.85
3126
3405
0.984230
TGCTAGGGTGTGGAAAGAGG
59.016
55.000
0.00
0.00
0.00
3.69
3127
3406
1.276622
GCTAGGGTGTGGAAAGAGGA
58.723
55.000
0.00
0.00
0.00
3.71
3128
3407
1.066071
GCTAGGGTGTGGAAAGAGGAC
60.066
57.143
0.00
0.00
0.00
3.85
3129
3408
2.541466
CTAGGGTGTGGAAAGAGGACT
58.459
52.381
0.00
0.00
0.00
3.85
3130
3409
1.059913
AGGGTGTGGAAAGAGGACTG
58.940
55.000
0.00
0.00
0.00
3.51
3131
3410
1.056660
GGGTGTGGAAAGAGGACTGA
58.943
55.000
0.00
0.00
0.00
3.41
3132
3411
1.002544
GGGTGTGGAAAGAGGACTGAG
59.997
57.143
0.00
0.00
0.00
3.35
3133
3412
1.609320
GGTGTGGAAAGAGGACTGAGC
60.609
57.143
0.00
0.00
0.00
4.26
3134
3413
1.346068
GTGTGGAAAGAGGACTGAGCT
59.654
52.381
0.00
0.00
0.00
4.09
3135
3414
2.050144
TGTGGAAAGAGGACTGAGCTT
58.950
47.619
0.00
0.00
0.00
3.74
3136
3415
2.439507
TGTGGAAAGAGGACTGAGCTTT
59.560
45.455
0.00
0.00
34.79
3.51
3137
3416
2.810852
GTGGAAAGAGGACTGAGCTTTG
59.189
50.000
0.00
0.00
32.45
2.77
3138
3417
2.224621
TGGAAAGAGGACTGAGCTTTGG
60.225
50.000
0.00
0.00
32.45
3.28
3139
3418
2.224646
GGAAAGAGGACTGAGCTTTGGT
60.225
50.000
0.00
0.00
32.45
3.67
3140
3419
2.557920
AAGAGGACTGAGCTTTGGTG
57.442
50.000
0.00
0.00
0.00
4.17
3141
3420
0.036022
AGAGGACTGAGCTTTGGTGC
59.964
55.000
0.00
0.00
0.00
5.01
3142
3421
0.250467
GAGGACTGAGCTTTGGTGCA
60.250
55.000
8.32
0.00
34.99
4.57
3143
3422
0.183492
AGGACTGAGCTTTGGTGCAA
59.817
50.000
0.00
0.00
34.99
4.08
3144
3423
1.202976
AGGACTGAGCTTTGGTGCAAT
60.203
47.619
0.00
0.00
34.99
3.56
3145
3424
2.040278
AGGACTGAGCTTTGGTGCAATA
59.960
45.455
0.00
0.00
34.99
1.90
3146
3425
2.819608
GGACTGAGCTTTGGTGCAATAA
59.180
45.455
0.00
0.00
34.99
1.40
3147
3426
3.366374
GGACTGAGCTTTGGTGCAATAAC
60.366
47.826
0.00
0.00
34.99
1.89
3148
3427
3.490348
ACTGAGCTTTGGTGCAATAACT
58.510
40.909
0.00
0.00
34.99
2.24
3149
3428
3.254166
ACTGAGCTTTGGTGCAATAACTG
59.746
43.478
0.00
0.00
34.99
3.16
3167
3446
2.846371
GCAGGTGCAGTTAGGTCAG
58.154
57.895
0.00
0.00
41.59
3.51
3168
3447
0.035458
GCAGGTGCAGTTAGGTCAGT
59.965
55.000
0.00
0.00
41.59
3.41
3169
3448
1.800805
CAGGTGCAGTTAGGTCAGTG
58.199
55.000
0.00
0.00
0.00
3.66
3170
3449
1.344438
CAGGTGCAGTTAGGTCAGTGA
59.656
52.381
0.00
0.00
0.00
3.41
3171
3450
1.344763
AGGTGCAGTTAGGTCAGTGAC
59.655
52.381
15.24
15.24
0.00
3.67
3172
3451
1.070134
GGTGCAGTTAGGTCAGTGACA
59.930
52.381
24.20
2.17
33.68
3.58
3173
3452
2.289694
GGTGCAGTTAGGTCAGTGACAT
60.290
50.000
24.20
20.07
33.68
3.06
3174
3453
2.738846
GTGCAGTTAGGTCAGTGACATG
59.261
50.000
24.20
14.38
33.68
3.21
3175
3454
2.368548
TGCAGTTAGGTCAGTGACATGT
59.631
45.455
24.20
10.88
33.68
3.21
3176
3455
2.738846
GCAGTTAGGTCAGTGACATGTG
59.261
50.000
24.20
16.46
33.68
3.21
3177
3456
3.329386
CAGTTAGGTCAGTGACATGTGG
58.671
50.000
24.20
6.04
33.68
4.17
3178
3457
2.303022
AGTTAGGTCAGTGACATGTGGG
59.697
50.000
24.20
0.00
33.68
4.61
3179
3458
0.613260
TAGGTCAGTGACATGTGGGC
59.387
55.000
24.20
5.53
33.68
5.36
3180
3459
1.675641
GGTCAGTGACATGTGGGCC
60.676
63.158
24.20
0.00
33.68
5.80
3181
3460
1.675641
GTCAGTGACATGTGGGCCC
60.676
63.158
17.59
17.59
32.09
5.80
3182
3461
2.152729
TCAGTGACATGTGGGCCCA
61.153
57.895
24.45
24.45
0.00
5.36
3183
3462
1.228521
CAGTGACATGTGGGCCCAA
60.229
57.895
30.64
17.87
0.00
4.12
3184
3463
1.228552
AGTGACATGTGGGCCCAAC
60.229
57.895
30.64
20.66
0.00
3.77
3185
3464
1.530419
GTGACATGTGGGCCCAACA
60.530
57.895
30.64
26.33
0.00
3.33
3186
3465
1.228521
TGACATGTGGGCCCAACAG
60.229
57.895
30.64
21.28
0.00
3.16
3187
3466
1.074775
GACATGTGGGCCCAACAGA
59.925
57.895
30.64
11.67
0.00
3.41
3188
3467
1.228552
ACATGTGGGCCCAACAGAC
60.229
57.895
30.64
15.09
0.00
3.51
3189
3468
2.034066
ATGTGGGCCCAACAGACG
59.966
61.111
30.64
0.00
0.00
4.18
3190
3469
3.567579
ATGTGGGCCCAACAGACGG
62.568
63.158
30.64
0.00
0.00
4.79
3198
3477
4.641645
CAACAGACGGCTGGCCCA
62.642
66.667
24.99
0.00
46.60
5.36
3199
3478
4.643387
AACAGACGGCTGGCCCAC
62.643
66.667
24.99
0.00
46.60
4.61
3201
3480
4.641645
CAGACGGCTGGCCCACAA
62.642
66.667
11.57
0.00
38.51
3.33
3202
3481
3.650950
AGACGGCTGGCCCACAAT
61.651
61.111
0.00
0.00
0.00
2.71
3203
3482
3.443045
GACGGCTGGCCCACAATG
61.443
66.667
0.00
0.00
0.00
2.82
3204
3483
4.284550
ACGGCTGGCCCACAATGT
62.285
61.111
0.00
0.00
0.00
2.71
3205
3484
3.443045
CGGCTGGCCCACAATGTC
61.443
66.667
0.00
0.00
0.00
3.06
3206
3485
2.283101
GGCTGGCCCACAATGTCA
60.283
61.111
0.00
0.00
0.00
3.58
3207
3486
2.639327
GGCTGGCCCACAATGTCAC
61.639
63.158
0.00
0.00
0.00
3.67
3208
3487
1.604593
GCTGGCCCACAATGTCACT
60.605
57.895
0.00
0.00
0.00
3.41
3209
3488
1.870055
GCTGGCCCACAATGTCACTG
61.870
60.000
0.00
0.00
0.00
3.66
3210
3489
0.250858
CTGGCCCACAATGTCACTGA
60.251
55.000
0.00
0.00
0.00
3.41
3211
3490
0.405198
TGGCCCACAATGTCACTGAT
59.595
50.000
0.00
0.00
0.00
2.90
3212
3491
1.098050
GGCCCACAATGTCACTGATC
58.902
55.000
0.00
0.00
0.00
2.92
3213
3492
1.098050
GCCCACAATGTCACTGATCC
58.902
55.000
0.00
0.00
0.00
3.36
3214
3493
1.614051
GCCCACAATGTCACTGATCCA
60.614
52.381
0.00
0.00
0.00
3.41
3215
3494
2.794103
CCCACAATGTCACTGATCCAA
58.206
47.619
0.00
0.00
0.00
3.53
3216
3495
2.489329
CCCACAATGTCACTGATCCAAC
59.511
50.000
0.00
0.00
0.00
3.77
3217
3496
3.415212
CCACAATGTCACTGATCCAACT
58.585
45.455
0.00
0.00
0.00
3.16
3218
3497
4.565444
CCCACAATGTCACTGATCCAACTA
60.565
45.833
0.00
0.00
0.00
2.24
3219
3498
4.393062
CCACAATGTCACTGATCCAACTAC
59.607
45.833
0.00
0.00
0.00
2.73
3220
3499
4.996758
CACAATGTCACTGATCCAACTACA
59.003
41.667
0.00
0.00
0.00
2.74
3221
3500
4.997395
ACAATGTCACTGATCCAACTACAC
59.003
41.667
0.00
0.00
0.00
2.90
3222
3501
3.678056
TGTCACTGATCCAACTACACC
57.322
47.619
0.00
0.00
0.00
4.16
3223
3502
3.239449
TGTCACTGATCCAACTACACCT
58.761
45.455
0.00
0.00
0.00
4.00
3224
3503
3.006859
TGTCACTGATCCAACTACACCTG
59.993
47.826
0.00
0.00
0.00
4.00
3225
3504
2.028112
TCACTGATCCAACTACACCTGC
60.028
50.000
0.00
0.00
0.00
4.85
3226
3505
1.977854
ACTGATCCAACTACACCTGCA
59.022
47.619
0.00
0.00
0.00
4.41
3227
3506
2.027745
ACTGATCCAACTACACCTGCAG
60.028
50.000
6.78
6.78
0.00
4.41
3228
3507
1.977854
TGATCCAACTACACCTGCAGT
59.022
47.619
13.81
0.00
0.00
4.40
3229
3508
2.371841
TGATCCAACTACACCTGCAGTT
59.628
45.455
13.81
0.00
35.38
3.16
3230
3509
3.580895
TGATCCAACTACACCTGCAGTTA
59.419
43.478
13.81
0.00
33.29
2.24
3231
3510
3.396260
TCCAACTACACCTGCAGTTAC
57.604
47.619
13.81
0.00
33.29
2.50
3232
3511
2.066262
CCAACTACACCTGCAGTTACG
58.934
52.381
13.81
0.00
33.29
3.18
3233
3512
2.066262
CAACTACACCTGCAGTTACGG
58.934
52.381
13.81
0.00
33.29
4.02
3234
3513
0.037605
ACTACACCTGCAGTTACGGC
60.038
55.000
13.81
0.00
0.00
5.68
3235
3514
0.037697
CTACACCTGCAGTTACGGCA
60.038
55.000
13.81
10.05
39.32
5.69
3236
3515
0.320073
TACACCTGCAGTTACGGCAC
60.320
55.000
13.81
0.00
36.11
5.01
3237
3516
2.032071
ACCTGCAGTTACGGCACC
59.968
61.111
13.81
0.00
36.11
5.01
3238
3517
3.118454
CCTGCAGTTACGGCACCG
61.118
66.667
13.81
7.71
46.03
4.94
3239
3518
2.048597
CTGCAGTTACGGCACCGA
60.049
61.111
17.40
0.00
42.83
4.69
3240
3519
1.666553
CTGCAGTTACGGCACCGAA
60.667
57.895
17.40
3.00
42.83
4.30
3241
3520
1.626654
CTGCAGTTACGGCACCGAAG
61.627
60.000
17.40
1.68
42.83
3.79
3242
3521
3.023591
GCAGTTACGGCACCGAAGC
62.024
63.158
17.40
8.00
42.83
3.86
3243
3522
1.666553
CAGTTACGGCACCGAAGCA
60.667
57.895
17.40
0.00
42.83
3.91
3244
3523
1.374252
AGTTACGGCACCGAAGCAG
60.374
57.895
17.40
0.02
42.83
4.24
3245
3524
2.740826
TTACGGCACCGAAGCAGC
60.741
61.111
17.40
0.00
42.83
5.25
3253
3532
4.717629
CCGAAGCAGCGTCCGTGA
62.718
66.667
2.43
0.00
0.00
4.35
3298
3942
2.168521
TCCTCTTAGTGAGCAATTCCCG
59.831
50.000
0.00
0.00
41.35
5.14
3304
3948
0.744414
GTGAGCAATTCCCGCAGCTA
60.744
55.000
0.00
0.00
37.48
3.32
3333
3977
8.273780
GCTATATGCAATGAGCCTAAAAGTAT
57.726
34.615
5.94
0.00
44.83
2.12
3343
3987
5.710099
TGAGCCTAAAAGTATTGTTTCCCAG
59.290
40.000
0.00
0.00
0.00
4.45
3346
3990
6.553476
AGCCTAAAAGTATTGTTTCCCAGTTT
59.447
34.615
0.00
0.00
0.00
2.66
3389
4033
6.966534
ACTTCTTCATGACAAGGTTGAATT
57.033
33.333
15.12
0.00
0.00
2.17
3413
4057
5.586243
TCTGAGTTGCTTAATTAGTGGCATC
59.414
40.000
9.50
9.08
34.59
3.91
3426
4070
2.183300
GCATCCGGTGCGTGTCTA
59.817
61.111
12.22
0.00
45.23
2.59
3454
4098
8.508875
GGAAAATTTGCATCTCACAAATGAATT
58.491
29.630
0.00
0.34
44.76
2.17
3488
4132
7.010923
GTCTTATTGATGGTTAGAAGCAGAGTG
59.989
40.741
0.29
0.00
40.07
3.51
3512
4156
4.698304
CACAGGGGCTTAAATAAGAACGAA
59.302
41.667
4.39
0.00
35.33
3.85
3538
4183
6.161381
TCTTTTACGGTGATTGGAGAGTTAC
58.839
40.000
0.00
0.00
0.00
2.50
3539
4184
5.471556
TTTACGGTGATTGGAGAGTTACA
57.528
39.130
0.00
0.00
0.00
2.41
3565
4210
5.789574
TGTAATTTCATGTAACTCCCCCT
57.210
39.130
0.00
0.00
0.00
4.79
3580
4225
6.014771
ACTCCCCCTTTGATTATTTCCTAC
57.985
41.667
0.00
0.00
0.00
3.18
3588
4233
8.440771
CCCTTTGATTATTTCCTACTGTATCCT
58.559
37.037
0.00
0.00
0.00
3.24
3595
4240
6.763715
ATTTCCTACTGTATCCTATTGGCA
57.236
37.500
0.00
0.00
0.00
4.92
3600
4245
0.599991
TGTATCCTATTGGCAGCGCG
60.600
55.000
0.00
0.00
0.00
6.86
3627
4272
1.133407
GACGACTGGATCTGTGAGGAC
59.867
57.143
0.00
0.00
0.00
3.85
3641
4286
6.361433
TCTGTGAGGACATTTCCAAACTAAA
58.639
36.000
0.00
0.00
45.72
1.85
3651
4296
6.659242
ACATTTCCAAACTAAATGACGGATCT
59.341
34.615
13.76
0.00
43.79
2.75
3658
4303
7.041780
CCAAACTAAATGACGGATCTATCCTTG
60.042
40.741
7.39
1.52
44.93
3.61
3672
4317
7.283354
GGATCTATCCTTGGAAAAACTAACTGG
59.717
40.741
1.52
0.00
43.73
4.00
3675
4320
6.650427
ATCCTTGGAAAAACTAACTGGTTC
57.350
37.500
0.00
0.00
0.00
3.62
3684
4329
7.931407
GGAAAAACTAACTGGTTCCATCAAAAT
59.069
33.333
0.00
0.00
38.11
1.82
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
188
189
8.421249
TCCAGTCAAATAGTCAAATTCCAATT
57.579
30.769
0.00
0.00
0.00
2.32
274
279
5.011635
GGGCTTATCCTCCTTTTCAAAAACA
59.988
40.000
0.00
0.00
34.39
2.83
301
309
6.084925
CGTGAAACTTACTCGATGTAGAAGT
58.915
40.000
0.00
0.00
32.08
3.01
307
315
7.088905
AGATTTACGTGAAACTTACTCGATGT
58.911
34.615
0.00
0.00
31.75
3.06
315
323
7.707464
TGTGAGACAAGATTTACGTGAAACTTA
59.293
33.333
13.87
0.00
31.75
2.24
316
324
6.537301
TGTGAGACAAGATTTACGTGAAACTT
59.463
34.615
9.37
9.37
31.75
2.66
452
460
2.159585
TGCATGACGTTTGGCGATTTAG
60.160
45.455
0.00
0.00
44.77
1.85
453
461
1.807142
TGCATGACGTTTGGCGATTTA
59.193
42.857
0.00
0.00
44.77
1.40
513
522
1.676014
CGGGTCAGATCCTCCAACAAC
60.676
57.143
0.00
0.00
0.00
3.32
522
531
1.679680
TCGAATGTACGGGTCAGATCC
59.320
52.381
0.00
0.00
0.00
3.36
556
565
8.359642
CCAATGAAAACTTGGAATCTCTAACAA
58.640
33.333
0.00
0.00
44.95
2.83
633
642
3.187700
CACATTGCGACTAACCTCTACC
58.812
50.000
0.00
0.00
0.00
3.18
639
648
2.988493
TCGTTACACATTGCGACTAACC
59.012
45.455
0.00
0.00
0.00
2.85
641
650
3.544682
CGATCGTTACACATTGCGACTAA
59.455
43.478
7.03
0.00
36.16
2.24
678
690
4.985845
TCGCTGTGAGAATTCGCA
57.014
50.000
7.89
7.89
41.33
5.10
701
713
2.335712
CCCGCAAGAAGGGTGCTTC
61.336
63.158
0.00
0.00
43.89
3.86
702
714
2.282462
CCCGCAAGAAGGGTGCTT
60.282
61.111
0.00
0.00
43.89
3.91
919
938
0.608856
TTGCATGGGTGGTGTGCTAG
60.609
55.000
0.00
0.00
39.52
3.42
926
945
0.396974
ACAACAGTTGCATGGGTGGT
60.397
50.000
13.56
0.00
0.00
4.16
1179
1204
2.817844
GGAGTAATTGCGGTTGAAAGGT
59.182
45.455
0.00
0.00
0.00
3.50
1191
1216
2.386661
AGCTCGTGGTGGAGTAATTG
57.613
50.000
0.00
0.00
36.41
2.32
1543
1568
1.275291
CGCCAGTATATTCCCGATGGT
59.725
52.381
0.00
0.00
0.00
3.55
1671
1696
2.801631
GCCGAGGGACTGGAGGATG
61.802
68.421
0.00
0.00
41.55
3.51
1908
1933
4.385405
GCCCAGAGCAGTGCGAGT
62.385
66.667
10.00
0.00
42.97
4.18
2196
2221
0.253894
TGTCCCTGTCGTCGGAGATA
59.746
55.000
0.00
0.00
40.67
1.98
2235
2260
1.754745
GGTGAAGTCTCCCACTGCA
59.245
57.895
0.00
0.00
38.52
4.41
2490
2515
1.841556
ACGCCCTCCAAGGTTCTCA
60.842
57.895
0.00
0.00
31.93
3.27
2719
2749
7.330946
TGAACGGAGTGAATACTTAACATCAAG
59.669
37.037
0.00
0.00
45.00
3.02
2722
2752
7.591006
TTGAACGGAGTGAATACTTAACATC
57.409
36.000
0.00
0.00
45.00
3.06
2784
2815
8.202745
AGTTCTTTCTTCATAATCATTCCGTC
57.797
34.615
0.00
0.00
0.00
4.79
2869
2902
8.695456
ACAAAGTTGAGACACTTATTTTGGAAT
58.305
29.630
0.00
0.00
35.87
3.01
2871
2904
7.639113
ACAAAGTTGAGACACTTATTTTGGA
57.361
32.000
0.00
0.00
35.87
3.53
2876
2909
8.139989
AGTACGTACAAAGTTGAGACACTTATT
58.860
33.333
26.55
0.00
35.87
1.40
2920
2953
8.391106
CCAATATAAGTGTCTCAAACTTAGCAC
58.609
37.037
2.85
0.00
41.95
4.40
2922
2955
7.769044
TCCCAATATAAGTGTCTCAAACTTAGC
59.231
37.037
2.85
0.00
41.95
3.09
2928
2961
5.188163
TCCGTCCCAATATAAGTGTCTCAAA
59.812
40.000
0.00
0.00
0.00
2.69
2931
2964
4.262079
CCTCCGTCCCAATATAAGTGTCTC
60.262
50.000
0.00
0.00
0.00
3.36
2937
2970
4.957684
ACTTCCTCCGTCCCAATATAAG
57.042
45.455
0.00
0.00
0.00
1.73
2949
2982
5.578005
TGACTTAAGACATACTTCCTCCG
57.422
43.478
10.09
0.00
39.72
4.63
3027
3306
9.243637
CTTTCGAATAGATTTCTAACAGAGGAG
57.756
37.037
0.00
0.00
31.39
3.69
3035
3314
9.938280
TCTTTCACCTTTCGAATAGATTTCTAA
57.062
29.630
0.00
0.00
31.39
2.10
3092
3371
5.426509
CACCCTAGCAATATCATCTATCCCA
59.573
44.000
0.00
0.00
0.00
4.37
3098
3377
4.234550
TCCACACCCTAGCAATATCATCT
58.765
43.478
0.00
0.00
0.00
2.90
3120
3399
2.856222
CACCAAAGCTCAGTCCTCTTT
58.144
47.619
0.00
0.00
0.00
2.52
3121
3400
1.544314
GCACCAAAGCTCAGTCCTCTT
60.544
52.381
0.00
0.00
0.00
2.85
3122
3401
0.036022
GCACCAAAGCTCAGTCCTCT
59.964
55.000
0.00
0.00
0.00
3.69
3123
3402
0.250467
TGCACCAAAGCTCAGTCCTC
60.250
55.000
0.00
0.00
34.99
3.71
3124
3403
0.183492
TTGCACCAAAGCTCAGTCCT
59.817
50.000
0.00
0.00
34.99
3.85
3125
3404
1.251251
ATTGCACCAAAGCTCAGTCC
58.749
50.000
0.00
0.00
34.99
3.85
3126
3405
3.503748
AGTTATTGCACCAAAGCTCAGTC
59.496
43.478
0.00
0.00
34.99
3.51
3127
3406
3.254166
CAGTTATTGCACCAAAGCTCAGT
59.746
43.478
0.00
0.00
34.99
3.41
3128
3407
3.829948
CAGTTATTGCACCAAAGCTCAG
58.170
45.455
0.00
0.00
34.99
3.35
3129
3408
3.921119
CAGTTATTGCACCAAAGCTCA
57.079
42.857
0.00
0.00
34.99
4.26
3149
3428
0.035458
ACTGACCTAACTGCACCTGC
59.965
55.000
0.00
0.00
42.50
4.85
3150
3429
1.344438
TCACTGACCTAACTGCACCTG
59.656
52.381
0.00
0.00
0.00
4.00
3151
3430
1.344763
GTCACTGACCTAACTGCACCT
59.655
52.381
0.00
0.00
0.00
4.00
3152
3431
1.070134
TGTCACTGACCTAACTGCACC
59.930
52.381
6.72
0.00
0.00
5.01
3153
3432
2.526304
TGTCACTGACCTAACTGCAC
57.474
50.000
6.72
0.00
0.00
4.57
3154
3433
2.368548
ACATGTCACTGACCTAACTGCA
59.631
45.455
6.72
0.00
0.00
4.41
3155
3434
2.738846
CACATGTCACTGACCTAACTGC
59.261
50.000
6.72
0.00
0.00
4.40
3156
3435
3.329386
CCACATGTCACTGACCTAACTG
58.671
50.000
6.72
0.28
0.00
3.16
3157
3436
2.303022
CCCACATGTCACTGACCTAACT
59.697
50.000
6.72
0.00
0.00
2.24
3158
3437
2.699954
CCCACATGTCACTGACCTAAC
58.300
52.381
6.72
0.00
0.00
2.34
3159
3438
1.003118
GCCCACATGTCACTGACCTAA
59.997
52.381
6.72
0.00
0.00
2.69
3160
3439
0.613260
GCCCACATGTCACTGACCTA
59.387
55.000
6.72
0.00
0.00
3.08
3161
3440
1.376466
GCCCACATGTCACTGACCT
59.624
57.895
6.72
0.00
0.00
3.85
3162
3441
1.675641
GGCCCACATGTCACTGACC
60.676
63.158
6.72
0.00
0.00
4.02
3163
3442
1.675641
GGGCCCACATGTCACTGAC
60.676
63.158
19.95
1.86
0.00
3.51
3164
3443
1.714011
TTGGGCCCACATGTCACTGA
61.714
55.000
28.70
1.58
0.00
3.41
3165
3444
1.228521
TTGGGCCCACATGTCACTG
60.229
57.895
28.70
0.00
0.00
3.66
3166
3445
1.228552
GTTGGGCCCACATGTCACT
60.229
57.895
28.70
0.00
0.00
3.41
3167
3446
1.526575
CTGTTGGGCCCACATGTCAC
61.527
60.000
28.70
20.12
0.00
3.67
3168
3447
1.228521
CTGTTGGGCCCACATGTCA
60.229
57.895
28.70
17.15
0.00
3.58
3169
3448
1.074775
TCTGTTGGGCCCACATGTC
59.925
57.895
28.70
13.28
0.00
3.06
3170
3449
1.228552
GTCTGTTGGGCCCACATGT
60.229
57.895
28.70
0.00
0.00
3.21
3171
3450
2.334946
CGTCTGTTGGGCCCACATG
61.335
63.158
28.70
17.40
0.00
3.21
3172
3451
2.034066
CGTCTGTTGGGCCCACAT
59.966
61.111
28.70
0.00
0.00
3.21
3173
3452
4.263572
CCGTCTGTTGGGCCCACA
62.264
66.667
28.70
23.95
0.00
4.17
3181
3460
4.641645
TGGGCCAGCCGTCTGTTG
62.642
66.667
0.00
0.00
38.66
3.33
3182
3461
4.643387
GTGGGCCAGCCGTCTGTT
62.643
66.667
6.40
0.00
38.66
3.16
3184
3463
3.925630
ATTGTGGGCCAGCCGTCTG
62.926
63.158
6.40
0.00
40.02
3.51
3185
3464
3.650950
ATTGTGGGCCAGCCGTCT
61.651
61.111
6.40
0.00
36.85
4.18
3186
3465
3.443045
CATTGTGGGCCAGCCGTC
61.443
66.667
6.40
0.00
36.85
4.79
3187
3466
4.284550
ACATTGTGGGCCAGCCGT
62.285
61.111
6.40
0.00
36.85
5.68
3188
3467
3.443045
GACATTGTGGGCCAGCCG
61.443
66.667
6.40
0.00
36.85
5.52
3189
3468
2.283101
TGACATTGTGGGCCAGCC
60.283
61.111
6.40
0.00
0.00
4.85
3190
3469
1.604593
AGTGACATTGTGGGCCAGC
60.605
57.895
6.40
2.28
0.00
4.85
3191
3470
0.250858
TCAGTGACATTGTGGGCCAG
60.251
55.000
6.40
0.00
0.00
4.85
3192
3471
0.405198
ATCAGTGACATTGTGGGCCA
59.595
50.000
0.00
0.00
0.00
5.36
3193
3472
1.098050
GATCAGTGACATTGTGGGCC
58.902
55.000
0.00
0.00
0.00
5.80
3194
3473
1.098050
GGATCAGTGACATTGTGGGC
58.902
55.000
0.00
0.00
0.00
5.36
3195
3474
2.489329
GTTGGATCAGTGACATTGTGGG
59.511
50.000
0.00
0.00
0.00
4.61
3196
3475
3.415212
AGTTGGATCAGTGACATTGTGG
58.585
45.455
0.00
0.00
0.00
4.17
3197
3476
4.996758
TGTAGTTGGATCAGTGACATTGTG
59.003
41.667
0.00
0.00
0.00
3.33
3198
3477
4.997395
GTGTAGTTGGATCAGTGACATTGT
59.003
41.667
0.00
0.00
0.00
2.71
3199
3478
4.393062
GGTGTAGTTGGATCAGTGACATTG
59.607
45.833
0.00
0.00
0.00
2.82
3200
3479
4.287067
AGGTGTAGTTGGATCAGTGACATT
59.713
41.667
0.00
0.00
0.00
2.71
3201
3480
3.840666
AGGTGTAGTTGGATCAGTGACAT
59.159
43.478
0.00
0.00
0.00
3.06
3202
3481
3.006859
CAGGTGTAGTTGGATCAGTGACA
59.993
47.826
0.00
0.00
0.00
3.58
3203
3482
3.589988
CAGGTGTAGTTGGATCAGTGAC
58.410
50.000
0.00
0.00
0.00
3.67
3204
3483
2.028112
GCAGGTGTAGTTGGATCAGTGA
60.028
50.000
0.00
0.00
0.00
3.41
3205
3484
2.289631
TGCAGGTGTAGTTGGATCAGTG
60.290
50.000
0.00
0.00
0.00
3.66
3206
3485
1.977854
TGCAGGTGTAGTTGGATCAGT
59.022
47.619
0.00
0.00
0.00
3.41
3207
3486
2.027745
ACTGCAGGTGTAGTTGGATCAG
60.028
50.000
19.93
0.00
37.74
2.90
3208
3487
1.977854
ACTGCAGGTGTAGTTGGATCA
59.022
47.619
19.93
0.00
37.74
2.92
3209
3488
2.770164
ACTGCAGGTGTAGTTGGATC
57.230
50.000
19.93
0.00
37.74
3.36
3215
3494
0.037605
GCCGTAACTGCAGGTGTAGT
60.038
55.000
16.44
0.00
42.80
2.73
3216
3495
0.037697
TGCCGTAACTGCAGGTGTAG
60.038
55.000
16.44
5.19
34.05
2.74
3217
3496
0.320073
GTGCCGTAACTGCAGGTGTA
60.320
55.000
16.44
1.88
39.87
2.90
3218
3497
1.597027
GTGCCGTAACTGCAGGTGT
60.597
57.895
16.44
2.99
39.87
4.16
3219
3498
2.325082
GGTGCCGTAACTGCAGGTG
61.325
63.158
16.44
0.00
39.87
4.00
3220
3499
2.032071
GGTGCCGTAACTGCAGGT
59.968
61.111
19.93
15.51
39.87
4.00
3221
3500
3.118454
CGGTGCCGTAACTGCAGG
61.118
66.667
19.93
0.79
39.87
4.85
3222
3501
1.626654
CTTCGGTGCCGTAACTGCAG
61.627
60.000
13.48
13.48
39.87
4.41
3223
3502
1.666553
CTTCGGTGCCGTAACTGCA
60.667
57.895
10.60
0.00
40.74
4.41
3224
3503
3.023591
GCTTCGGTGCCGTAACTGC
62.024
63.158
10.60
5.63
40.74
4.40
3225
3504
1.626654
CTGCTTCGGTGCCGTAACTG
61.627
60.000
10.60
0.00
40.74
3.16
3226
3505
1.374252
CTGCTTCGGTGCCGTAACT
60.374
57.895
10.60
0.00
40.74
2.24
3227
3506
3.023591
GCTGCTTCGGTGCCGTAAC
62.024
63.158
10.60
0.00
40.74
2.50
3228
3507
2.740826
GCTGCTTCGGTGCCGTAA
60.741
61.111
10.60
3.41
40.74
3.18
3236
3515
4.717629
TCACGGACGCTGCTTCGG
62.718
66.667
11.28
11.28
0.00
4.30
3237
3516
1.827315
TTTTCACGGACGCTGCTTCG
61.827
55.000
0.00
1.36
0.00
3.79
3238
3517
0.110644
CTTTTCACGGACGCTGCTTC
60.111
55.000
0.00
0.00
0.00
3.86
3239
3518
0.531974
TCTTTTCACGGACGCTGCTT
60.532
50.000
0.00
0.00
0.00
3.91
3240
3519
1.069090
TCTTTTCACGGACGCTGCT
59.931
52.632
0.00
0.00
0.00
4.24
3241
3520
1.204312
GTCTTTTCACGGACGCTGC
59.796
57.895
0.00
0.00
0.00
5.25
3242
3521
0.784778
GAGTCTTTTCACGGACGCTG
59.215
55.000
0.00
0.00
37.52
5.18
3243
3522
0.319641
GGAGTCTTTTCACGGACGCT
60.320
55.000
0.00
0.00
37.52
5.07
3244
3523
1.289800
GGGAGTCTTTTCACGGACGC
61.290
60.000
0.00
0.00
37.52
5.19
3245
3524
0.317479
AGGGAGTCTTTTCACGGACG
59.683
55.000
0.00
0.00
37.52
4.79
3246
3525
2.224209
TGAAGGGAGTCTTTTCACGGAC
60.224
50.000
5.96
0.00
35.50
4.79
3247
3526
2.043992
TGAAGGGAGTCTTTTCACGGA
58.956
47.619
5.96
0.00
35.50
4.69
3248
3527
2.543777
TGAAGGGAGTCTTTTCACGG
57.456
50.000
5.96
0.00
35.50
4.94
3249
3528
4.184629
CCTATGAAGGGAGTCTTTTCACG
58.815
47.826
10.61
6.64
39.48
4.35
3250
3529
3.942115
GCCTATGAAGGGAGTCTTTTCAC
59.058
47.826
10.61
0.00
43.87
3.18
3251
3530
3.587061
TGCCTATGAAGGGAGTCTTTTCA
59.413
43.478
10.74
10.74
43.87
2.69
3252
3531
4.222124
TGCCTATGAAGGGAGTCTTTTC
57.778
45.455
0.00
0.00
43.87
2.29
3253
3532
4.593956
CTTGCCTATGAAGGGAGTCTTTT
58.406
43.478
0.00
0.00
45.07
2.27
3326
3970
6.155393
TGGTGAAACTGGGAAACAATACTTTT
59.845
34.615
0.00
0.00
36.74
2.27
3333
3977
3.374042
TCTGGTGAAACTGGGAAACAA
57.626
42.857
0.00
0.00
36.74
2.83
3346
3990
4.717877
AGTTGTTCACATTGATCTGGTGA
58.282
39.130
9.58
9.58
39.60
4.02
3389
4033
4.905429
TGCCACTAATTAAGCAACTCAGA
58.095
39.130
2.83
0.00
30.97
3.27
3413
4057
0.390603
TTTCCATAGACACGCACCGG
60.391
55.000
0.00
0.00
0.00
5.28
3426
4070
7.162761
TCATTTGTGAGATGCAAATTTTCCAT
58.837
30.769
0.00
1.71
42.54
3.41
3488
4132
3.181500
CGTTCTTATTTAAGCCCCTGTGC
60.181
47.826
0.00
0.00
33.40
4.57
3496
4140
9.247562
CGTAAAAGAGTTCGTTCTTATTTAAGC
57.752
33.333
1.27
0.00
36.42
3.09
3512
4156
4.283722
ACTCTCCAATCACCGTAAAAGAGT
59.716
41.667
0.00
0.00
37.87
3.24
3538
4183
7.763985
GGGGGAGTTACATGAAATTACATTTTG
59.236
37.037
0.00
0.00
31.47
2.44
3539
4184
7.678171
AGGGGGAGTTACATGAAATTACATTTT
59.322
33.333
0.00
0.00
31.47
1.82
3561
4206
7.665974
GGATACAGTAGGAAATAATCAAAGGGG
59.334
40.741
0.00
0.00
0.00
4.79
3580
4225
1.151668
GCGCTGCCAATAGGATACAG
58.848
55.000
0.00
0.00
41.41
2.74
3600
4245
1.139095
GATCCAGTCGTCACGTCCC
59.861
63.158
0.00
0.00
0.00
4.46
3606
4251
1.177401
CCTCACAGATCCAGTCGTCA
58.823
55.000
0.00
0.00
0.00
4.35
3627
4272
7.088589
AGATCCGTCATTTAGTTTGGAAATG
57.911
36.000
2.39
2.39
42.94
2.32
3651
4296
6.717997
GGAACCAGTTAGTTTTTCCAAGGATA
59.282
38.462
0.00
0.00
36.51
2.59
3658
4303
6.399639
TTGATGGAACCAGTTAGTTTTTCC
57.600
37.500
0.00
0.00
36.95
3.13
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.