Multiple sequence alignment - TraesCS3D01G232700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G232700 chr3D 100.000 3692 0 0 1 3692 320504227 320507918 0.000000e+00 6818.0
1 TraesCS3D01G232700 chr3D 86.508 126 16 1 3127 3252 589208740 589208616 1.790000e-28 137.0
2 TraesCS3D01G232700 chr3B 94.349 3150 115 36 1 3125 399902994 399899883 0.000000e+00 4772.0
3 TraesCS3D01G232700 chr3B 91.262 412 34 2 3282 3692 399899495 399899085 8.950000e-156 560.0
4 TraesCS3D01G232700 chr3B 87.097 124 15 1 3129 3252 368115420 368115298 4.970000e-29 139.0
5 TraesCS3D01G232700 chr3B 95.775 71 3 0 3514 3584 816745979 816745909 8.380000e-22 115.0
6 TraesCS3D01G232700 chr3B 95.775 71 3 0 3514 3584 828948185 828948115 8.380000e-22 115.0
7 TraesCS3D01G232700 chr3A 94.632 2869 111 25 19 2867 405627863 405625018 0.000000e+00 4405.0
8 TraesCS3D01G232700 chr3A 88.318 214 25 0 3251 3464 405624624 405624411 1.320000e-64 257.0
9 TraesCS3D01G232700 chr3A 88.776 98 10 1 3155 3252 340901856 340901952 6.480000e-23 119.0
10 TraesCS3D01G232700 chr3A 87.379 103 7 5 2860 2961 156232080 156231983 3.010000e-21 113.0
11 TraesCS3D01G232700 chr3A 96.154 52 2 0 3533 3584 746143891 746143840 6.570000e-13 86.1
12 TraesCS3D01G232700 chr5A 93.452 168 11 0 2260 2427 573988380 573988213 2.200000e-62 250.0
13 TraesCS3D01G232700 chr7B 87.692 130 15 1 3126 3255 482820021 482819893 2.300000e-32 150.0
14 TraesCS3D01G232700 chr7B 87.736 106 7 4 2857 2961 419041380 419041480 6.480000e-23 119.0
15 TraesCS3D01G232700 chr7B 94.118 68 4 0 3511 3578 720322031 720322098 1.810000e-18 104.0
16 TraesCS3D01G232700 chr6A 85.714 126 17 1 3126 3251 201366865 201366989 8.320000e-27 132.0
17 TraesCS3D01G232700 chr7A 88.571 105 8 2 2857 2961 466252974 466253074 1.390000e-24 124.0
18 TraesCS3D01G232700 chr7A 85.185 108 12 1 2860 2967 138008555 138008452 1.400000e-19 108.0
19 TraesCS3D01G232700 chr4D 89.109 101 7 3 2860 2960 482704210 482704114 5.010000e-24 122.0
20 TraesCS3D01G232700 chr4B 88.119 101 8 3 2860 2960 612274927 612274831 2.330000e-22 117.0
21 TraesCS3D01G232700 chr4B 87.500 104 9 3 2857 2960 621424693 621424792 2.330000e-22 117.0
22 TraesCS3D01G232700 chr4B 92.958 71 5 0 3514 3584 624645798 624645728 1.810000e-18 104.0
23 TraesCS3D01G232700 chr7D 86.538 104 8 4 2857 2959 407855877 407855975 3.900000e-20 110.0
24 TraesCS3D01G232700 chr5D 89.189 74 3 1 3511 3584 195563302 195563370 1.830000e-13 87.9
25 TraesCS3D01G232700 chr4A 89.831 59 5 1 3193 3251 626689369 626689426 1.420000e-09 75.0
26 TraesCS3D01G232700 chr2D 96.875 32 1 0 3222 3253 459810477 459810446 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G232700 chr3D 320504227 320507918 3691 False 6818 6818 100.0000 1 3692 1 chr3D.!!$F1 3691
1 TraesCS3D01G232700 chr3B 399899085 399902994 3909 True 2666 4772 92.8055 1 3692 2 chr3B.!!$R4 3691
2 TraesCS3D01G232700 chr3A 405624411 405627863 3452 True 2331 4405 91.4750 19 3464 2 chr3A.!!$R3 3445


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
513 522 1.06861 CGCAAAATGTGTGGTACAGGG 60.069 52.381 0.00 0.0 43.80 4.45 F
1179 1204 0.40404 GATGGGTGTGGTTCCCTCAA 59.596 55.000 2.65 0.0 44.84 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2196 2221 0.253894 TGTCCCTGTCGTCGGAGATA 59.746 55.0 0.0 0.0 40.67 1.98 R
3149 3428 0.035458 ACTGACCTAACTGCACCTGC 59.965 55.0 0.0 0.0 42.50 4.85 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 4.990426 GTGAACCCATTTCAATGAAGTTGG 59.010 41.667 15.82 15.82 46.09 3.77
188 189 6.321181 AGAAATAGTCAAAAGCCACAAACTCA 59.679 34.615 0.00 0.00 0.00 3.41
301 309 1.489230 GAAAAGGAGGATAAGCCCCGA 59.511 52.381 0.00 0.00 37.37 5.14
307 315 2.595238 GAGGATAAGCCCCGACTTCTA 58.405 52.381 0.00 0.00 37.37 2.10
315 323 1.390565 CCCCGACTTCTACATCGAGT 58.609 55.000 0.00 0.00 40.86 4.18
316 324 2.569059 CCCCGACTTCTACATCGAGTA 58.431 52.381 0.00 0.00 40.86 2.59
325 333 6.084925 ACTTCTACATCGAGTAAGTTTCACG 58.915 40.000 0.00 0.00 30.92 4.35
513 522 1.068610 CGCAAAATGTGTGGTACAGGG 60.069 52.381 0.00 0.00 43.80 4.45
522 531 1.142060 TGTGGTACAGGGTTGTTGGAG 59.858 52.381 0.00 0.00 41.80 3.86
556 565 1.133976 CATTCGAGATCCAAAGGCCCT 60.134 52.381 0.00 0.00 0.00 5.19
633 642 1.888512 CAAGGTCTTGGGGTTGACATG 59.111 52.381 2.94 0.00 36.95 3.21
639 648 2.571653 TCTTGGGGTTGACATGGTAGAG 59.428 50.000 0.00 0.00 0.00 2.43
641 650 1.286248 GGGGTTGACATGGTAGAGGT 58.714 55.000 0.00 0.00 0.00 3.85
735 754 6.134055 TCTTGCGGGGCATATAGTAGTATAT 58.866 40.000 4.50 4.50 38.76 0.86
778 797 8.624776 CAAAGGTCAGAAAGTTGACTAATTCTT 58.375 33.333 6.17 0.00 45.32 2.52
865 884 4.467438 ACTCATATGGGTGCATGATCGATA 59.533 41.667 7.64 0.00 31.05 2.92
926 945 1.870993 CGCATCTGCATAGCTAGCACA 60.871 52.381 18.83 8.45 42.21 4.57
1117 1142 2.017782 CCTTCGCTCTAGACACTGCTA 58.982 52.381 0.00 0.00 0.00 3.49
1179 1204 0.404040 GATGGGTGTGGTTCCCTCAA 59.596 55.000 2.65 0.00 44.84 3.02
1191 1216 0.536460 TCCCTCAACCTTTCAACCGC 60.536 55.000 0.00 0.00 0.00 5.68
1212 1237 2.673368 CAATTACTCCACCACGAGCTTC 59.327 50.000 0.00 0.00 32.79 3.86
1899 1924 2.702788 TACGCACCGATTCGCTGGA 61.703 57.895 0.00 0.00 0.00 3.86
2059 2084 2.685380 CCTTCCTCCCGTGGCTCT 60.685 66.667 0.00 0.00 0.00 4.09
2400 2425 0.247460 TCCTGTCGTTCCTGATGCAG 59.753 55.000 0.00 0.00 0.00 4.41
2490 2515 0.745845 GAGCCATGGTGACGAGCAAT 60.746 55.000 14.67 0.00 32.09 3.56
2784 2815 8.739972 ACTAAATCAGCTACACTTTATTTTGGG 58.260 33.333 0.00 0.00 0.00 4.12
2794 2825 5.714806 ACACTTTATTTTGGGACGGAATGAT 59.285 36.000 0.00 0.00 0.00 2.45
2869 2902 5.006896 TGGAGTTCTAAGTACTTCCTCCA 57.993 43.478 26.43 26.43 43.40 3.86
2871 2904 6.023603 TGGAGTTCTAAGTACTTCCTCCATT 58.976 40.000 26.43 7.86 41.41 3.16
2876 2909 6.945636 TCTAAGTACTTCCTCCATTCCAAA 57.054 37.500 12.39 0.00 0.00 3.28
2894 2927 8.971321 CATTCCAAAATAAGTGTCTCAACTTTG 58.029 33.333 0.00 0.00 40.77 2.77
2895 2928 7.639113 TCCAAAATAAGTGTCTCAACTTTGT 57.361 32.000 0.00 0.00 40.77 2.83
2896 2929 8.740123 TCCAAAATAAGTGTCTCAACTTTGTA 57.260 30.769 0.00 0.00 40.77 2.41
2897 2930 8.617809 TCCAAAATAAGTGTCTCAACTTTGTAC 58.382 33.333 0.00 0.00 40.77 2.90
2898 2931 7.586300 CCAAAATAAGTGTCTCAACTTTGTACG 59.414 37.037 0.00 0.00 40.77 3.67
2905 2938 7.483307 AGTGTCTCAACTTTGTACGTACTAAA 58.517 34.615 25.12 20.21 0.00 1.85
2937 2970 5.485662 AAGTTGTGCTAAGTTTGAGACAC 57.514 39.130 0.00 0.00 0.00 3.67
2949 2982 7.923414 AAGTTTGAGACACTTATATTGGGAC 57.077 36.000 0.00 0.00 32.48 4.46
2958 2991 4.101119 CACTTATATTGGGACGGAGGAAGT 59.899 45.833 0.00 0.00 0.00 3.01
2959 2992 5.303589 CACTTATATTGGGACGGAGGAAGTA 59.696 44.000 0.00 0.00 0.00 2.24
2964 2997 1.006758 TGGGACGGAGGAAGTATGTCT 59.993 52.381 0.00 0.00 0.00 3.41
3035 3314 5.708736 TCTAGATTCTCTGACTCCTCTGT 57.291 43.478 0.00 0.00 0.00 3.41
3049 3328 7.708051 TGACTCCTCTGTTAGAAATCTATTCG 58.292 38.462 0.00 0.00 0.00 3.34
3120 3399 4.234550 AGATGATATTGCTAGGGTGTGGA 58.765 43.478 0.00 0.00 0.00 4.02
3121 3400 4.660303 AGATGATATTGCTAGGGTGTGGAA 59.340 41.667 0.00 0.00 0.00 3.53
3122 3401 4.853468 TGATATTGCTAGGGTGTGGAAA 57.147 40.909 0.00 0.00 0.00 3.13
3123 3402 4.780815 TGATATTGCTAGGGTGTGGAAAG 58.219 43.478 0.00 0.00 0.00 2.62
3124 3403 4.473196 TGATATTGCTAGGGTGTGGAAAGA 59.527 41.667 0.00 0.00 0.00 2.52
3125 3404 2.859165 TTGCTAGGGTGTGGAAAGAG 57.141 50.000 0.00 0.00 0.00 2.85
3126 3405 0.984230 TGCTAGGGTGTGGAAAGAGG 59.016 55.000 0.00 0.00 0.00 3.69
3127 3406 1.276622 GCTAGGGTGTGGAAAGAGGA 58.723 55.000 0.00 0.00 0.00 3.71
3128 3407 1.066071 GCTAGGGTGTGGAAAGAGGAC 60.066 57.143 0.00 0.00 0.00 3.85
3129 3408 2.541466 CTAGGGTGTGGAAAGAGGACT 58.459 52.381 0.00 0.00 0.00 3.85
3130 3409 1.059913 AGGGTGTGGAAAGAGGACTG 58.940 55.000 0.00 0.00 0.00 3.51
3131 3410 1.056660 GGGTGTGGAAAGAGGACTGA 58.943 55.000 0.00 0.00 0.00 3.41
3132 3411 1.002544 GGGTGTGGAAAGAGGACTGAG 59.997 57.143 0.00 0.00 0.00 3.35
3133 3412 1.609320 GGTGTGGAAAGAGGACTGAGC 60.609 57.143 0.00 0.00 0.00 4.26
3134 3413 1.346068 GTGTGGAAAGAGGACTGAGCT 59.654 52.381 0.00 0.00 0.00 4.09
3135 3414 2.050144 TGTGGAAAGAGGACTGAGCTT 58.950 47.619 0.00 0.00 0.00 3.74
3136 3415 2.439507 TGTGGAAAGAGGACTGAGCTTT 59.560 45.455 0.00 0.00 34.79 3.51
3137 3416 2.810852 GTGGAAAGAGGACTGAGCTTTG 59.189 50.000 0.00 0.00 32.45 2.77
3138 3417 2.224621 TGGAAAGAGGACTGAGCTTTGG 60.225 50.000 0.00 0.00 32.45 3.28
3139 3418 2.224646 GGAAAGAGGACTGAGCTTTGGT 60.225 50.000 0.00 0.00 32.45 3.67
3140 3419 2.557920 AAGAGGACTGAGCTTTGGTG 57.442 50.000 0.00 0.00 0.00 4.17
3141 3420 0.036022 AGAGGACTGAGCTTTGGTGC 59.964 55.000 0.00 0.00 0.00 5.01
3142 3421 0.250467 GAGGACTGAGCTTTGGTGCA 60.250 55.000 8.32 0.00 34.99 4.57
3143 3422 0.183492 AGGACTGAGCTTTGGTGCAA 59.817 50.000 0.00 0.00 34.99 4.08
3144 3423 1.202976 AGGACTGAGCTTTGGTGCAAT 60.203 47.619 0.00 0.00 34.99 3.56
3145 3424 2.040278 AGGACTGAGCTTTGGTGCAATA 59.960 45.455 0.00 0.00 34.99 1.90
3146 3425 2.819608 GGACTGAGCTTTGGTGCAATAA 59.180 45.455 0.00 0.00 34.99 1.40
3147 3426 3.366374 GGACTGAGCTTTGGTGCAATAAC 60.366 47.826 0.00 0.00 34.99 1.89
3148 3427 3.490348 ACTGAGCTTTGGTGCAATAACT 58.510 40.909 0.00 0.00 34.99 2.24
3149 3428 3.254166 ACTGAGCTTTGGTGCAATAACTG 59.746 43.478 0.00 0.00 34.99 3.16
3167 3446 2.846371 GCAGGTGCAGTTAGGTCAG 58.154 57.895 0.00 0.00 41.59 3.51
3168 3447 0.035458 GCAGGTGCAGTTAGGTCAGT 59.965 55.000 0.00 0.00 41.59 3.41
3169 3448 1.800805 CAGGTGCAGTTAGGTCAGTG 58.199 55.000 0.00 0.00 0.00 3.66
3170 3449 1.344438 CAGGTGCAGTTAGGTCAGTGA 59.656 52.381 0.00 0.00 0.00 3.41
3171 3450 1.344763 AGGTGCAGTTAGGTCAGTGAC 59.655 52.381 15.24 15.24 0.00 3.67
3172 3451 1.070134 GGTGCAGTTAGGTCAGTGACA 59.930 52.381 24.20 2.17 33.68 3.58
3173 3452 2.289694 GGTGCAGTTAGGTCAGTGACAT 60.290 50.000 24.20 20.07 33.68 3.06
3174 3453 2.738846 GTGCAGTTAGGTCAGTGACATG 59.261 50.000 24.20 14.38 33.68 3.21
3175 3454 2.368548 TGCAGTTAGGTCAGTGACATGT 59.631 45.455 24.20 10.88 33.68 3.21
3176 3455 2.738846 GCAGTTAGGTCAGTGACATGTG 59.261 50.000 24.20 16.46 33.68 3.21
3177 3456 3.329386 CAGTTAGGTCAGTGACATGTGG 58.671 50.000 24.20 6.04 33.68 4.17
3178 3457 2.303022 AGTTAGGTCAGTGACATGTGGG 59.697 50.000 24.20 0.00 33.68 4.61
3179 3458 0.613260 TAGGTCAGTGACATGTGGGC 59.387 55.000 24.20 5.53 33.68 5.36
3180 3459 1.675641 GGTCAGTGACATGTGGGCC 60.676 63.158 24.20 0.00 33.68 5.80
3181 3460 1.675641 GTCAGTGACATGTGGGCCC 60.676 63.158 17.59 17.59 32.09 5.80
3182 3461 2.152729 TCAGTGACATGTGGGCCCA 61.153 57.895 24.45 24.45 0.00 5.36
3183 3462 1.228521 CAGTGACATGTGGGCCCAA 60.229 57.895 30.64 17.87 0.00 4.12
3184 3463 1.228552 AGTGACATGTGGGCCCAAC 60.229 57.895 30.64 20.66 0.00 3.77
3185 3464 1.530419 GTGACATGTGGGCCCAACA 60.530 57.895 30.64 26.33 0.00 3.33
3186 3465 1.228521 TGACATGTGGGCCCAACAG 60.229 57.895 30.64 21.28 0.00 3.16
3187 3466 1.074775 GACATGTGGGCCCAACAGA 59.925 57.895 30.64 11.67 0.00 3.41
3188 3467 1.228552 ACATGTGGGCCCAACAGAC 60.229 57.895 30.64 15.09 0.00 3.51
3189 3468 2.034066 ATGTGGGCCCAACAGACG 59.966 61.111 30.64 0.00 0.00 4.18
3190 3469 3.567579 ATGTGGGCCCAACAGACGG 62.568 63.158 30.64 0.00 0.00 4.79
3198 3477 4.641645 CAACAGACGGCTGGCCCA 62.642 66.667 24.99 0.00 46.60 5.36
3199 3478 4.643387 AACAGACGGCTGGCCCAC 62.643 66.667 24.99 0.00 46.60 4.61
3201 3480 4.641645 CAGACGGCTGGCCCACAA 62.642 66.667 11.57 0.00 38.51 3.33
3202 3481 3.650950 AGACGGCTGGCCCACAAT 61.651 61.111 0.00 0.00 0.00 2.71
3203 3482 3.443045 GACGGCTGGCCCACAATG 61.443 66.667 0.00 0.00 0.00 2.82
3204 3483 4.284550 ACGGCTGGCCCACAATGT 62.285 61.111 0.00 0.00 0.00 2.71
3205 3484 3.443045 CGGCTGGCCCACAATGTC 61.443 66.667 0.00 0.00 0.00 3.06
3206 3485 2.283101 GGCTGGCCCACAATGTCA 60.283 61.111 0.00 0.00 0.00 3.58
3207 3486 2.639327 GGCTGGCCCACAATGTCAC 61.639 63.158 0.00 0.00 0.00 3.67
3208 3487 1.604593 GCTGGCCCACAATGTCACT 60.605 57.895 0.00 0.00 0.00 3.41
3209 3488 1.870055 GCTGGCCCACAATGTCACTG 61.870 60.000 0.00 0.00 0.00 3.66
3210 3489 0.250858 CTGGCCCACAATGTCACTGA 60.251 55.000 0.00 0.00 0.00 3.41
3211 3490 0.405198 TGGCCCACAATGTCACTGAT 59.595 50.000 0.00 0.00 0.00 2.90
3212 3491 1.098050 GGCCCACAATGTCACTGATC 58.902 55.000 0.00 0.00 0.00 2.92
3213 3492 1.098050 GCCCACAATGTCACTGATCC 58.902 55.000 0.00 0.00 0.00 3.36
3214 3493 1.614051 GCCCACAATGTCACTGATCCA 60.614 52.381 0.00 0.00 0.00 3.41
3215 3494 2.794103 CCCACAATGTCACTGATCCAA 58.206 47.619 0.00 0.00 0.00 3.53
3216 3495 2.489329 CCCACAATGTCACTGATCCAAC 59.511 50.000 0.00 0.00 0.00 3.77
3217 3496 3.415212 CCACAATGTCACTGATCCAACT 58.585 45.455 0.00 0.00 0.00 3.16
3218 3497 4.565444 CCCACAATGTCACTGATCCAACTA 60.565 45.833 0.00 0.00 0.00 2.24
3219 3498 4.393062 CCACAATGTCACTGATCCAACTAC 59.607 45.833 0.00 0.00 0.00 2.73
3220 3499 4.996758 CACAATGTCACTGATCCAACTACA 59.003 41.667 0.00 0.00 0.00 2.74
3221 3500 4.997395 ACAATGTCACTGATCCAACTACAC 59.003 41.667 0.00 0.00 0.00 2.90
3222 3501 3.678056 TGTCACTGATCCAACTACACC 57.322 47.619 0.00 0.00 0.00 4.16
3223 3502 3.239449 TGTCACTGATCCAACTACACCT 58.761 45.455 0.00 0.00 0.00 4.00
3224 3503 3.006859 TGTCACTGATCCAACTACACCTG 59.993 47.826 0.00 0.00 0.00 4.00
3225 3504 2.028112 TCACTGATCCAACTACACCTGC 60.028 50.000 0.00 0.00 0.00 4.85
3226 3505 1.977854 ACTGATCCAACTACACCTGCA 59.022 47.619 0.00 0.00 0.00 4.41
3227 3506 2.027745 ACTGATCCAACTACACCTGCAG 60.028 50.000 6.78 6.78 0.00 4.41
3228 3507 1.977854 TGATCCAACTACACCTGCAGT 59.022 47.619 13.81 0.00 0.00 4.40
3229 3508 2.371841 TGATCCAACTACACCTGCAGTT 59.628 45.455 13.81 0.00 35.38 3.16
3230 3509 3.580895 TGATCCAACTACACCTGCAGTTA 59.419 43.478 13.81 0.00 33.29 2.24
3231 3510 3.396260 TCCAACTACACCTGCAGTTAC 57.604 47.619 13.81 0.00 33.29 2.50
3232 3511 2.066262 CCAACTACACCTGCAGTTACG 58.934 52.381 13.81 0.00 33.29 3.18
3233 3512 2.066262 CAACTACACCTGCAGTTACGG 58.934 52.381 13.81 0.00 33.29 4.02
3234 3513 0.037605 ACTACACCTGCAGTTACGGC 60.038 55.000 13.81 0.00 0.00 5.68
3235 3514 0.037697 CTACACCTGCAGTTACGGCA 60.038 55.000 13.81 10.05 39.32 5.69
3236 3515 0.320073 TACACCTGCAGTTACGGCAC 60.320 55.000 13.81 0.00 36.11 5.01
3237 3516 2.032071 ACCTGCAGTTACGGCACC 59.968 61.111 13.81 0.00 36.11 5.01
3238 3517 3.118454 CCTGCAGTTACGGCACCG 61.118 66.667 13.81 7.71 46.03 4.94
3239 3518 2.048597 CTGCAGTTACGGCACCGA 60.049 61.111 17.40 0.00 42.83 4.69
3240 3519 1.666553 CTGCAGTTACGGCACCGAA 60.667 57.895 17.40 3.00 42.83 4.30
3241 3520 1.626654 CTGCAGTTACGGCACCGAAG 61.627 60.000 17.40 1.68 42.83 3.79
3242 3521 3.023591 GCAGTTACGGCACCGAAGC 62.024 63.158 17.40 8.00 42.83 3.86
3243 3522 1.666553 CAGTTACGGCACCGAAGCA 60.667 57.895 17.40 0.00 42.83 3.91
3244 3523 1.374252 AGTTACGGCACCGAAGCAG 60.374 57.895 17.40 0.02 42.83 4.24
3245 3524 2.740826 TTACGGCACCGAAGCAGC 60.741 61.111 17.40 0.00 42.83 5.25
3253 3532 4.717629 CCGAAGCAGCGTCCGTGA 62.718 66.667 2.43 0.00 0.00 4.35
3298 3942 2.168521 TCCTCTTAGTGAGCAATTCCCG 59.831 50.000 0.00 0.00 41.35 5.14
3304 3948 0.744414 GTGAGCAATTCCCGCAGCTA 60.744 55.000 0.00 0.00 37.48 3.32
3333 3977 8.273780 GCTATATGCAATGAGCCTAAAAGTAT 57.726 34.615 5.94 0.00 44.83 2.12
3343 3987 5.710099 TGAGCCTAAAAGTATTGTTTCCCAG 59.290 40.000 0.00 0.00 0.00 4.45
3346 3990 6.553476 AGCCTAAAAGTATTGTTTCCCAGTTT 59.447 34.615 0.00 0.00 0.00 2.66
3389 4033 6.966534 ACTTCTTCATGACAAGGTTGAATT 57.033 33.333 15.12 0.00 0.00 2.17
3413 4057 5.586243 TCTGAGTTGCTTAATTAGTGGCATC 59.414 40.000 9.50 9.08 34.59 3.91
3426 4070 2.183300 GCATCCGGTGCGTGTCTA 59.817 61.111 12.22 0.00 45.23 2.59
3454 4098 8.508875 GGAAAATTTGCATCTCACAAATGAATT 58.491 29.630 0.00 0.34 44.76 2.17
3488 4132 7.010923 GTCTTATTGATGGTTAGAAGCAGAGTG 59.989 40.741 0.29 0.00 40.07 3.51
3512 4156 4.698304 CACAGGGGCTTAAATAAGAACGAA 59.302 41.667 4.39 0.00 35.33 3.85
3538 4183 6.161381 TCTTTTACGGTGATTGGAGAGTTAC 58.839 40.000 0.00 0.00 0.00 2.50
3539 4184 5.471556 TTTACGGTGATTGGAGAGTTACA 57.528 39.130 0.00 0.00 0.00 2.41
3565 4210 5.789574 TGTAATTTCATGTAACTCCCCCT 57.210 39.130 0.00 0.00 0.00 4.79
3580 4225 6.014771 ACTCCCCCTTTGATTATTTCCTAC 57.985 41.667 0.00 0.00 0.00 3.18
3588 4233 8.440771 CCCTTTGATTATTTCCTACTGTATCCT 58.559 37.037 0.00 0.00 0.00 3.24
3595 4240 6.763715 ATTTCCTACTGTATCCTATTGGCA 57.236 37.500 0.00 0.00 0.00 4.92
3600 4245 0.599991 TGTATCCTATTGGCAGCGCG 60.600 55.000 0.00 0.00 0.00 6.86
3627 4272 1.133407 GACGACTGGATCTGTGAGGAC 59.867 57.143 0.00 0.00 0.00 3.85
3641 4286 6.361433 TCTGTGAGGACATTTCCAAACTAAA 58.639 36.000 0.00 0.00 45.72 1.85
3651 4296 6.659242 ACATTTCCAAACTAAATGACGGATCT 59.341 34.615 13.76 0.00 43.79 2.75
3658 4303 7.041780 CCAAACTAAATGACGGATCTATCCTTG 60.042 40.741 7.39 1.52 44.93 3.61
3672 4317 7.283354 GGATCTATCCTTGGAAAAACTAACTGG 59.717 40.741 1.52 0.00 43.73 4.00
3675 4320 6.650427 ATCCTTGGAAAAACTAACTGGTTC 57.350 37.500 0.00 0.00 0.00 3.62
3684 4329 7.931407 GGAAAAACTAACTGGTTCCATCAAAAT 59.069 33.333 0.00 0.00 38.11 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
188 189 8.421249 TCCAGTCAAATAGTCAAATTCCAATT 57.579 30.769 0.00 0.00 0.00 2.32
274 279 5.011635 GGGCTTATCCTCCTTTTCAAAAACA 59.988 40.000 0.00 0.00 34.39 2.83
301 309 6.084925 CGTGAAACTTACTCGATGTAGAAGT 58.915 40.000 0.00 0.00 32.08 3.01
307 315 7.088905 AGATTTACGTGAAACTTACTCGATGT 58.911 34.615 0.00 0.00 31.75 3.06
315 323 7.707464 TGTGAGACAAGATTTACGTGAAACTTA 59.293 33.333 13.87 0.00 31.75 2.24
316 324 6.537301 TGTGAGACAAGATTTACGTGAAACTT 59.463 34.615 9.37 9.37 31.75 2.66
452 460 2.159585 TGCATGACGTTTGGCGATTTAG 60.160 45.455 0.00 0.00 44.77 1.85
453 461 1.807142 TGCATGACGTTTGGCGATTTA 59.193 42.857 0.00 0.00 44.77 1.40
513 522 1.676014 CGGGTCAGATCCTCCAACAAC 60.676 57.143 0.00 0.00 0.00 3.32
522 531 1.679680 TCGAATGTACGGGTCAGATCC 59.320 52.381 0.00 0.00 0.00 3.36
556 565 8.359642 CCAATGAAAACTTGGAATCTCTAACAA 58.640 33.333 0.00 0.00 44.95 2.83
633 642 3.187700 CACATTGCGACTAACCTCTACC 58.812 50.000 0.00 0.00 0.00 3.18
639 648 2.988493 TCGTTACACATTGCGACTAACC 59.012 45.455 0.00 0.00 0.00 2.85
641 650 3.544682 CGATCGTTACACATTGCGACTAA 59.455 43.478 7.03 0.00 36.16 2.24
678 690 4.985845 TCGCTGTGAGAATTCGCA 57.014 50.000 7.89 7.89 41.33 5.10
701 713 2.335712 CCCGCAAGAAGGGTGCTTC 61.336 63.158 0.00 0.00 43.89 3.86
702 714 2.282462 CCCGCAAGAAGGGTGCTT 60.282 61.111 0.00 0.00 43.89 3.91
919 938 0.608856 TTGCATGGGTGGTGTGCTAG 60.609 55.000 0.00 0.00 39.52 3.42
926 945 0.396974 ACAACAGTTGCATGGGTGGT 60.397 50.000 13.56 0.00 0.00 4.16
1179 1204 2.817844 GGAGTAATTGCGGTTGAAAGGT 59.182 45.455 0.00 0.00 0.00 3.50
1191 1216 2.386661 AGCTCGTGGTGGAGTAATTG 57.613 50.000 0.00 0.00 36.41 2.32
1543 1568 1.275291 CGCCAGTATATTCCCGATGGT 59.725 52.381 0.00 0.00 0.00 3.55
1671 1696 2.801631 GCCGAGGGACTGGAGGATG 61.802 68.421 0.00 0.00 41.55 3.51
1908 1933 4.385405 GCCCAGAGCAGTGCGAGT 62.385 66.667 10.00 0.00 42.97 4.18
2196 2221 0.253894 TGTCCCTGTCGTCGGAGATA 59.746 55.000 0.00 0.00 40.67 1.98
2235 2260 1.754745 GGTGAAGTCTCCCACTGCA 59.245 57.895 0.00 0.00 38.52 4.41
2490 2515 1.841556 ACGCCCTCCAAGGTTCTCA 60.842 57.895 0.00 0.00 31.93 3.27
2719 2749 7.330946 TGAACGGAGTGAATACTTAACATCAAG 59.669 37.037 0.00 0.00 45.00 3.02
2722 2752 7.591006 TTGAACGGAGTGAATACTTAACATC 57.409 36.000 0.00 0.00 45.00 3.06
2784 2815 8.202745 AGTTCTTTCTTCATAATCATTCCGTC 57.797 34.615 0.00 0.00 0.00 4.79
2869 2902 8.695456 ACAAAGTTGAGACACTTATTTTGGAAT 58.305 29.630 0.00 0.00 35.87 3.01
2871 2904 7.639113 ACAAAGTTGAGACACTTATTTTGGA 57.361 32.000 0.00 0.00 35.87 3.53
2876 2909 8.139989 AGTACGTACAAAGTTGAGACACTTATT 58.860 33.333 26.55 0.00 35.87 1.40
2920 2953 8.391106 CCAATATAAGTGTCTCAAACTTAGCAC 58.609 37.037 2.85 0.00 41.95 4.40
2922 2955 7.769044 TCCCAATATAAGTGTCTCAAACTTAGC 59.231 37.037 2.85 0.00 41.95 3.09
2928 2961 5.188163 TCCGTCCCAATATAAGTGTCTCAAA 59.812 40.000 0.00 0.00 0.00 2.69
2931 2964 4.262079 CCTCCGTCCCAATATAAGTGTCTC 60.262 50.000 0.00 0.00 0.00 3.36
2937 2970 4.957684 ACTTCCTCCGTCCCAATATAAG 57.042 45.455 0.00 0.00 0.00 1.73
2949 2982 5.578005 TGACTTAAGACATACTTCCTCCG 57.422 43.478 10.09 0.00 39.72 4.63
3027 3306 9.243637 CTTTCGAATAGATTTCTAACAGAGGAG 57.756 37.037 0.00 0.00 31.39 3.69
3035 3314 9.938280 TCTTTCACCTTTCGAATAGATTTCTAA 57.062 29.630 0.00 0.00 31.39 2.10
3092 3371 5.426509 CACCCTAGCAATATCATCTATCCCA 59.573 44.000 0.00 0.00 0.00 4.37
3098 3377 4.234550 TCCACACCCTAGCAATATCATCT 58.765 43.478 0.00 0.00 0.00 2.90
3120 3399 2.856222 CACCAAAGCTCAGTCCTCTTT 58.144 47.619 0.00 0.00 0.00 2.52
3121 3400 1.544314 GCACCAAAGCTCAGTCCTCTT 60.544 52.381 0.00 0.00 0.00 2.85
3122 3401 0.036022 GCACCAAAGCTCAGTCCTCT 59.964 55.000 0.00 0.00 0.00 3.69
3123 3402 0.250467 TGCACCAAAGCTCAGTCCTC 60.250 55.000 0.00 0.00 34.99 3.71
3124 3403 0.183492 TTGCACCAAAGCTCAGTCCT 59.817 50.000 0.00 0.00 34.99 3.85
3125 3404 1.251251 ATTGCACCAAAGCTCAGTCC 58.749 50.000 0.00 0.00 34.99 3.85
3126 3405 3.503748 AGTTATTGCACCAAAGCTCAGTC 59.496 43.478 0.00 0.00 34.99 3.51
3127 3406 3.254166 CAGTTATTGCACCAAAGCTCAGT 59.746 43.478 0.00 0.00 34.99 3.41
3128 3407 3.829948 CAGTTATTGCACCAAAGCTCAG 58.170 45.455 0.00 0.00 34.99 3.35
3129 3408 3.921119 CAGTTATTGCACCAAAGCTCA 57.079 42.857 0.00 0.00 34.99 4.26
3149 3428 0.035458 ACTGACCTAACTGCACCTGC 59.965 55.000 0.00 0.00 42.50 4.85
3150 3429 1.344438 TCACTGACCTAACTGCACCTG 59.656 52.381 0.00 0.00 0.00 4.00
3151 3430 1.344763 GTCACTGACCTAACTGCACCT 59.655 52.381 0.00 0.00 0.00 4.00
3152 3431 1.070134 TGTCACTGACCTAACTGCACC 59.930 52.381 6.72 0.00 0.00 5.01
3153 3432 2.526304 TGTCACTGACCTAACTGCAC 57.474 50.000 6.72 0.00 0.00 4.57
3154 3433 2.368548 ACATGTCACTGACCTAACTGCA 59.631 45.455 6.72 0.00 0.00 4.41
3155 3434 2.738846 CACATGTCACTGACCTAACTGC 59.261 50.000 6.72 0.00 0.00 4.40
3156 3435 3.329386 CCACATGTCACTGACCTAACTG 58.671 50.000 6.72 0.28 0.00 3.16
3157 3436 2.303022 CCCACATGTCACTGACCTAACT 59.697 50.000 6.72 0.00 0.00 2.24
3158 3437 2.699954 CCCACATGTCACTGACCTAAC 58.300 52.381 6.72 0.00 0.00 2.34
3159 3438 1.003118 GCCCACATGTCACTGACCTAA 59.997 52.381 6.72 0.00 0.00 2.69
3160 3439 0.613260 GCCCACATGTCACTGACCTA 59.387 55.000 6.72 0.00 0.00 3.08
3161 3440 1.376466 GCCCACATGTCACTGACCT 59.624 57.895 6.72 0.00 0.00 3.85
3162 3441 1.675641 GGCCCACATGTCACTGACC 60.676 63.158 6.72 0.00 0.00 4.02
3163 3442 1.675641 GGGCCCACATGTCACTGAC 60.676 63.158 19.95 1.86 0.00 3.51
3164 3443 1.714011 TTGGGCCCACATGTCACTGA 61.714 55.000 28.70 1.58 0.00 3.41
3165 3444 1.228521 TTGGGCCCACATGTCACTG 60.229 57.895 28.70 0.00 0.00 3.66
3166 3445 1.228552 GTTGGGCCCACATGTCACT 60.229 57.895 28.70 0.00 0.00 3.41
3167 3446 1.526575 CTGTTGGGCCCACATGTCAC 61.527 60.000 28.70 20.12 0.00 3.67
3168 3447 1.228521 CTGTTGGGCCCACATGTCA 60.229 57.895 28.70 17.15 0.00 3.58
3169 3448 1.074775 TCTGTTGGGCCCACATGTC 59.925 57.895 28.70 13.28 0.00 3.06
3170 3449 1.228552 GTCTGTTGGGCCCACATGT 60.229 57.895 28.70 0.00 0.00 3.21
3171 3450 2.334946 CGTCTGTTGGGCCCACATG 61.335 63.158 28.70 17.40 0.00 3.21
3172 3451 2.034066 CGTCTGTTGGGCCCACAT 59.966 61.111 28.70 0.00 0.00 3.21
3173 3452 4.263572 CCGTCTGTTGGGCCCACA 62.264 66.667 28.70 23.95 0.00 4.17
3181 3460 4.641645 TGGGCCAGCCGTCTGTTG 62.642 66.667 0.00 0.00 38.66 3.33
3182 3461 4.643387 GTGGGCCAGCCGTCTGTT 62.643 66.667 6.40 0.00 38.66 3.16
3184 3463 3.925630 ATTGTGGGCCAGCCGTCTG 62.926 63.158 6.40 0.00 40.02 3.51
3185 3464 3.650950 ATTGTGGGCCAGCCGTCT 61.651 61.111 6.40 0.00 36.85 4.18
3186 3465 3.443045 CATTGTGGGCCAGCCGTC 61.443 66.667 6.40 0.00 36.85 4.79
3187 3466 4.284550 ACATTGTGGGCCAGCCGT 62.285 61.111 6.40 0.00 36.85 5.68
3188 3467 3.443045 GACATTGTGGGCCAGCCG 61.443 66.667 6.40 0.00 36.85 5.52
3189 3468 2.283101 TGACATTGTGGGCCAGCC 60.283 61.111 6.40 0.00 0.00 4.85
3190 3469 1.604593 AGTGACATTGTGGGCCAGC 60.605 57.895 6.40 2.28 0.00 4.85
3191 3470 0.250858 TCAGTGACATTGTGGGCCAG 60.251 55.000 6.40 0.00 0.00 4.85
3192 3471 0.405198 ATCAGTGACATTGTGGGCCA 59.595 50.000 0.00 0.00 0.00 5.36
3193 3472 1.098050 GATCAGTGACATTGTGGGCC 58.902 55.000 0.00 0.00 0.00 5.80
3194 3473 1.098050 GGATCAGTGACATTGTGGGC 58.902 55.000 0.00 0.00 0.00 5.36
3195 3474 2.489329 GTTGGATCAGTGACATTGTGGG 59.511 50.000 0.00 0.00 0.00 4.61
3196 3475 3.415212 AGTTGGATCAGTGACATTGTGG 58.585 45.455 0.00 0.00 0.00 4.17
3197 3476 4.996758 TGTAGTTGGATCAGTGACATTGTG 59.003 41.667 0.00 0.00 0.00 3.33
3198 3477 4.997395 GTGTAGTTGGATCAGTGACATTGT 59.003 41.667 0.00 0.00 0.00 2.71
3199 3478 4.393062 GGTGTAGTTGGATCAGTGACATTG 59.607 45.833 0.00 0.00 0.00 2.82
3200 3479 4.287067 AGGTGTAGTTGGATCAGTGACATT 59.713 41.667 0.00 0.00 0.00 2.71
3201 3480 3.840666 AGGTGTAGTTGGATCAGTGACAT 59.159 43.478 0.00 0.00 0.00 3.06
3202 3481 3.006859 CAGGTGTAGTTGGATCAGTGACA 59.993 47.826 0.00 0.00 0.00 3.58
3203 3482 3.589988 CAGGTGTAGTTGGATCAGTGAC 58.410 50.000 0.00 0.00 0.00 3.67
3204 3483 2.028112 GCAGGTGTAGTTGGATCAGTGA 60.028 50.000 0.00 0.00 0.00 3.41
3205 3484 2.289631 TGCAGGTGTAGTTGGATCAGTG 60.290 50.000 0.00 0.00 0.00 3.66
3206 3485 1.977854 TGCAGGTGTAGTTGGATCAGT 59.022 47.619 0.00 0.00 0.00 3.41
3207 3486 2.027745 ACTGCAGGTGTAGTTGGATCAG 60.028 50.000 19.93 0.00 37.74 2.90
3208 3487 1.977854 ACTGCAGGTGTAGTTGGATCA 59.022 47.619 19.93 0.00 37.74 2.92
3209 3488 2.770164 ACTGCAGGTGTAGTTGGATC 57.230 50.000 19.93 0.00 37.74 3.36
3215 3494 0.037605 GCCGTAACTGCAGGTGTAGT 60.038 55.000 16.44 0.00 42.80 2.73
3216 3495 0.037697 TGCCGTAACTGCAGGTGTAG 60.038 55.000 16.44 5.19 34.05 2.74
3217 3496 0.320073 GTGCCGTAACTGCAGGTGTA 60.320 55.000 16.44 1.88 39.87 2.90
3218 3497 1.597027 GTGCCGTAACTGCAGGTGT 60.597 57.895 16.44 2.99 39.87 4.16
3219 3498 2.325082 GGTGCCGTAACTGCAGGTG 61.325 63.158 16.44 0.00 39.87 4.00
3220 3499 2.032071 GGTGCCGTAACTGCAGGT 59.968 61.111 19.93 15.51 39.87 4.00
3221 3500 3.118454 CGGTGCCGTAACTGCAGG 61.118 66.667 19.93 0.79 39.87 4.85
3222 3501 1.626654 CTTCGGTGCCGTAACTGCAG 61.627 60.000 13.48 13.48 39.87 4.41
3223 3502 1.666553 CTTCGGTGCCGTAACTGCA 60.667 57.895 10.60 0.00 40.74 4.41
3224 3503 3.023591 GCTTCGGTGCCGTAACTGC 62.024 63.158 10.60 5.63 40.74 4.40
3225 3504 1.626654 CTGCTTCGGTGCCGTAACTG 61.627 60.000 10.60 0.00 40.74 3.16
3226 3505 1.374252 CTGCTTCGGTGCCGTAACT 60.374 57.895 10.60 0.00 40.74 2.24
3227 3506 3.023591 GCTGCTTCGGTGCCGTAAC 62.024 63.158 10.60 0.00 40.74 2.50
3228 3507 2.740826 GCTGCTTCGGTGCCGTAA 60.741 61.111 10.60 3.41 40.74 3.18
3236 3515 4.717629 TCACGGACGCTGCTTCGG 62.718 66.667 11.28 11.28 0.00 4.30
3237 3516 1.827315 TTTTCACGGACGCTGCTTCG 61.827 55.000 0.00 1.36 0.00 3.79
3238 3517 0.110644 CTTTTCACGGACGCTGCTTC 60.111 55.000 0.00 0.00 0.00 3.86
3239 3518 0.531974 TCTTTTCACGGACGCTGCTT 60.532 50.000 0.00 0.00 0.00 3.91
3240 3519 1.069090 TCTTTTCACGGACGCTGCT 59.931 52.632 0.00 0.00 0.00 4.24
3241 3520 1.204312 GTCTTTTCACGGACGCTGC 59.796 57.895 0.00 0.00 0.00 5.25
3242 3521 0.784778 GAGTCTTTTCACGGACGCTG 59.215 55.000 0.00 0.00 37.52 5.18
3243 3522 0.319641 GGAGTCTTTTCACGGACGCT 60.320 55.000 0.00 0.00 37.52 5.07
3244 3523 1.289800 GGGAGTCTTTTCACGGACGC 61.290 60.000 0.00 0.00 37.52 5.19
3245 3524 0.317479 AGGGAGTCTTTTCACGGACG 59.683 55.000 0.00 0.00 37.52 4.79
3246 3525 2.224209 TGAAGGGAGTCTTTTCACGGAC 60.224 50.000 5.96 0.00 35.50 4.79
3247 3526 2.043992 TGAAGGGAGTCTTTTCACGGA 58.956 47.619 5.96 0.00 35.50 4.69
3248 3527 2.543777 TGAAGGGAGTCTTTTCACGG 57.456 50.000 5.96 0.00 35.50 4.94
3249 3528 4.184629 CCTATGAAGGGAGTCTTTTCACG 58.815 47.826 10.61 6.64 39.48 4.35
3250 3529 3.942115 GCCTATGAAGGGAGTCTTTTCAC 59.058 47.826 10.61 0.00 43.87 3.18
3251 3530 3.587061 TGCCTATGAAGGGAGTCTTTTCA 59.413 43.478 10.74 10.74 43.87 2.69
3252 3531 4.222124 TGCCTATGAAGGGAGTCTTTTC 57.778 45.455 0.00 0.00 43.87 2.29
3253 3532 4.593956 CTTGCCTATGAAGGGAGTCTTTT 58.406 43.478 0.00 0.00 45.07 2.27
3326 3970 6.155393 TGGTGAAACTGGGAAACAATACTTTT 59.845 34.615 0.00 0.00 36.74 2.27
3333 3977 3.374042 TCTGGTGAAACTGGGAAACAA 57.626 42.857 0.00 0.00 36.74 2.83
3346 3990 4.717877 AGTTGTTCACATTGATCTGGTGA 58.282 39.130 9.58 9.58 39.60 4.02
3389 4033 4.905429 TGCCACTAATTAAGCAACTCAGA 58.095 39.130 2.83 0.00 30.97 3.27
3413 4057 0.390603 TTTCCATAGACACGCACCGG 60.391 55.000 0.00 0.00 0.00 5.28
3426 4070 7.162761 TCATTTGTGAGATGCAAATTTTCCAT 58.837 30.769 0.00 1.71 42.54 3.41
3488 4132 3.181500 CGTTCTTATTTAAGCCCCTGTGC 60.181 47.826 0.00 0.00 33.40 4.57
3496 4140 9.247562 CGTAAAAGAGTTCGTTCTTATTTAAGC 57.752 33.333 1.27 0.00 36.42 3.09
3512 4156 4.283722 ACTCTCCAATCACCGTAAAAGAGT 59.716 41.667 0.00 0.00 37.87 3.24
3538 4183 7.763985 GGGGGAGTTACATGAAATTACATTTTG 59.236 37.037 0.00 0.00 31.47 2.44
3539 4184 7.678171 AGGGGGAGTTACATGAAATTACATTTT 59.322 33.333 0.00 0.00 31.47 1.82
3561 4206 7.665974 GGATACAGTAGGAAATAATCAAAGGGG 59.334 40.741 0.00 0.00 0.00 4.79
3580 4225 1.151668 GCGCTGCCAATAGGATACAG 58.848 55.000 0.00 0.00 41.41 2.74
3600 4245 1.139095 GATCCAGTCGTCACGTCCC 59.861 63.158 0.00 0.00 0.00 4.46
3606 4251 1.177401 CCTCACAGATCCAGTCGTCA 58.823 55.000 0.00 0.00 0.00 4.35
3627 4272 7.088589 AGATCCGTCATTTAGTTTGGAAATG 57.911 36.000 2.39 2.39 42.94 2.32
3651 4296 6.717997 GGAACCAGTTAGTTTTTCCAAGGATA 59.282 38.462 0.00 0.00 36.51 2.59
3658 4303 6.399639 TTGATGGAACCAGTTAGTTTTTCC 57.600 37.500 0.00 0.00 36.95 3.13



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.