Multiple sequence alignment - TraesCS3D01G231600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G231600 chr3D 100.000 4339 0 0 1 4339 317197816 317202154 0.000000e+00 8013.0
1 TraesCS3D01G231600 chr3D 100.000 3831 0 0 4727 8557 317202542 317206372 0.000000e+00 7075.0
2 TraesCS3D01G231600 chr3D 93.564 202 13 0 5580 5781 586958967 586959168 1.400000e-77 302.0
3 TraesCS3D01G231600 chr3D 96.648 179 4 2 7887 8065 563837750 563837574 6.490000e-76 296.0
4 TraesCS3D01G231600 chr3A 94.032 3770 139 28 603 4335 410114985 410111265 0.000000e+00 5637.0
5 TraesCS3D01G231600 chr3A 92.951 2128 78 27 5782 7870 410110139 410108045 0.000000e+00 3033.0
6 TraesCS3D01G231600 chr3A 97.552 858 20 1 4727 5583 410111237 410110380 0.000000e+00 1467.0
7 TraesCS3D01G231600 chr3A 91.991 462 19 6 8055 8505 410108032 410107578 4.360000e-177 632.0
8 TraesCS3D01G231600 chr3A 81.879 447 72 8 66 508 526856582 526857023 1.360000e-97 368.0
9 TraesCS3D01G231600 chr3A 82.567 413 65 6 53 462 444285391 444285799 2.940000e-94 357.0
10 TraesCS3D01G231600 chr3B 94.238 2204 85 10 620 2807 401810359 401808182 0.000000e+00 3328.0
11 TraesCS3D01G231600 chr3B 93.551 1349 55 12 3002 4337 401808178 401806849 0.000000e+00 1980.0
12 TraesCS3D01G231600 chr3B 95.223 1256 38 10 5782 7020 401805739 401804489 0.000000e+00 1967.0
13 TraesCS3D01G231600 chr3B 97.322 859 21 1 4727 5583 401806838 401805980 0.000000e+00 1458.0
14 TraesCS3D01G231600 chr3B 96.038 530 16 2 7074 7603 401804490 401803966 0.000000e+00 857.0
15 TraesCS3D01G231600 chr3B 79.428 909 156 26 1325 2223 406649934 406650821 1.580000e-171 614.0
16 TraesCS3D01G231600 chr3B 90.909 462 19 6 8055 8505 401803747 401803298 4.420000e-167 599.0
17 TraesCS3D01G231600 chr3B 85.398 226 11 8 7648 7870 401803966 401803760 1.870000e-51 215.0
18 TraesCS3D01G231600 chr4D 79.621 3008 369 142 714 3597 96912259 96909372 0.000000e+00 1934.0
19 TraesCS3D01G231600 chr4D 90.371 862 76 6 4737 5592 96908425 96907565 0.000000e+00 1125.0
20 TraesCS3D01G231600 chr4D 79.315 701 99 30 3641 4313 96909379 96908697 4.710000e-122 449.0
21 TraesCS3D01G231600 chr4D 96.517 201 7 0 5579 5779 258893655 258893455 4.950000e-87 333.0
22 TraesCS3D01G231600 chr4D 97.191 178 3 2 7879 8055 113186974 113187150 5.020000e-77 300.0
23 TraesCS3D01G231600 chr4D 95.238 189 5 4 7878 8065 420144051 420143866 6.490000e-76 296.0
24 TraesCS3D01G231600 chr4D 94.709 189 7 3 7865 8052 509818854 509819040 3.020000e-74 291.0
25 TraesCS3D01G231600 chr4A 81.337 2438 298 90 1247 3591 479412044 479414417 0.000000e+00 1836.0
26 TraesCS3D01G231600 chr4A 90.743 821 69 6 4769 5583 479416367 479417186 0.000000e+00 1088.0
27 TraesCS3D01G231600 chr4A 86.986 876 87 12 4730 5592 497815650 497814789 0.000000e+00 961.0
28 TraesCS3D01G231600 chr4A 83.455 550 79 6 55 603 200056288 200055750 1.280000e-137 501.0
29 TraesCS3D01G231600 chr4A 79.571 700 98 27 3641 4310 479414416 479415100 7.830000e-125 459.0
30 TraesCS3D01G231600 chr4A 92.883 281 20 0 53 333 516586135 516585855 8.000000e-110 409.0
31 TraesCS3D01G231600 chr4A 77.312 692 107 35 2923 3597 497819876 497819218 6.310000e-96 363.0
32 TraesCS3D01G231600 chr4A 80.255 471 66 13 3641 4090 497819216 497818752 6.400000e-86 329.0
33 TraesCS3D01G231600 chr4A 85.217 115 16 1 3477 3591 479415141 479415254 5.430000e-22 117.0
34 TraesCS3D01G231600 chr4A 94.000 50 3 0 6959 7008 497814516 497814467 9.210000e-10 76.8
35 TraesCS3D01G231600 chr4A 85.938 64 7 2 8483 8546 101515665 101515604 5.540000e-07 67.6
36 TraesCS3D01G231600 chr4B 79.225 1704 233 71 1971 3597 138305553 138303894 0.000000e+00 1074.0
37 TraesCS3D01G231600 chr4B 90.363 799 70 6 4800 5592 138302844 138302047 0.000000e+00 1042.0
38 TraesCS3D01G231600 chr4B 79.919 1240 141 65 714 1908 138306744 138305568 0.000000e+00 811.0
39 TraesCS3D01G231600 chr4B 79.627 1232 170 51 6407 7588 138301117 138299917 0.000000e+00 809.0
40 TraesCS3D01G231600 chr4B 84.142 618 76 17 1235 1840 119858920 119859527 5.760000e-161 579.0
41 TraesCS3D01G231600 chr4B 91.228 57 4 1 8500 8556 581066330 581066385 9.210000e-10 76.8
42 TraesCS3D01G231600 chr7B 85.814 860 111 10 4731 5583 665542936 665542081 0.000000e+00 902.0
43 TraesCS3D01G231600 chr7B 91.176 272 23 1 333 603 107926339 107926068 1.360000e-97 368.0
44 TraesCS3D01G231600 chr7B 94.340 53 3 0 8504 8556 488352249 488352301 1.980000e-11 82.4
45 TraesCS3D01G231600 chr7B 89.286 56 6 0 8501 8556 83536237 83536292 4.290000e-08 71.3
46 TraesCS3D01G231600 chr5B 84.890 867 112 14 4728 5583 93459332 93460190 0.000000e+00 857.0
47 TraesCS3D01G231600 chr2A 84.755 551 83 1 54 603 693643025 693642475 1.260000e-152 551.0
48 TraesCS3D01G231600 chr5A 84.139 517 71 7 4739 5245 684629502 684628987 2.780000e-134 490.0
49 TraesCS3D01G231600 chr5A 93.659 205 12 1 5576 5779 688698211 688698415 1.080000e-78 305.0
50 TraesCS3D01G231600 chr5A 94.444 198 10 1 5583 5779 357050962 357050765 3.880000e-78 303.0
51 TraesCS3D01G231600 chr6A 81.555 553 84 12 55 603 421221864 421221326 2.840000e-119 440.0
52 TraesCS3D01G231600 chr6A 95.122 41 2 0 2092 2132 549539526 549539486 1.990000e-06 65.8
53 TraesCS3D01G231600 chr2D 82.724 492 74 10 54 539 339196798 339196312 2.210000e-115 427.0
54 TraesCS3D01G231600 chr2D 94.554 202 11 0 5578 5779 647674604 647674805 6.450000e-81 313.0
55 TraesCS3D01G231600 chr2D 96.133 181 6 1 7874 8054 252715232 252715053 2.340000e-75 294.0
56 TraesCS3D01G231600 chr2D 96.154 52 0 2 8505 8556 5909192 5909241 5.500000e-12 84.2
57 TraesCS3D01G231600 chr1B 92.908 282 20 0 52 333 558919895 558919614 2.220000e-110 411.0
58 TraesCS3D01G231600 chr1B 92.657 286 20 1 51 336 660674443 660674727 2.220000e-110 411.0
59 TraesCS3D01G231600 chr1B 79.342 547 104 9 57 598 612399941 612400483 8.110000e-100 375.0
60 TraesCS3D01G231600 chr7D 93.382 272 17 1 333 603 583442202 583441931 1.340000e-107 401.0
61 TraesCS3D01G231600 chr7D 92.336 274 20 1 331 603 123368358 123368085 1.040000e-103 388.0
62 TraesCS3D01G231600 chr7D 90.842 273 24 1 329 600 326122829 326123101 1.760000e-96 364.0
63 TraesCS3D01G231600 chr7D 95.918 49 1 1 8505 8553 295151127 295151080 2.560000e-10 78.7
64 TraesCS3D01G231600 chr7D 91.071 56 5 0 8501 8556 340233596 340233651 9.210000e-10 76.8
65 TraesCS3D01G231600 chr6D 91.176 272 23 1 333 603 183017157 183016886 1.360000e-97 368.0
66 TraesCS3D01G231600 chr6D 94.554 202 10 1 5583 5784 181729733 181729533 2.320000e-80 311.0
67 TraesCS3D01G231600 chr6D 96.154 182 5 2 7879 8060 115783102 115782923 6.490000e-76 296.0
68 TraesCS3D01G231600 chr6D 95.122 41 2 0 2092 2132 403066780 403066740 1.990000e-06 65.8
69 TraesCS3D01G231600 chr7A 94.146 205 9 2 5580 5784 504221549 504221348 8.340000e-80 309.0
70 TraesCS3D01G231600 chr7A 95.833 48 2 0 8503 8550 571270589 571270542 2.560000e-10 78.7
71 TraesCS3D01G231600 chr5D 91.593 226 15 4 5568 5791 362579277 362579500 8.340000e-80 309.0
72 TraesCS3D01G231600 chr5D 96.610 177 6 0 7877 8053 466142342 466142518 2.340000e-75 294.0
73 TraesCS3D01G231600 chr5D 96.629 178 4 2 7887 8063 486175133 486175309 2.340000e-75 294.0
74 TraesCS3D01G231600 chr5D 95.604 182 6 2 7871 8052 508629017 508629196 3.020000e-74 291.0
75 TraesCS3D01G231600 chr6B 91.943 211 15 2 5576 5785 347750841 347751050 2.340000e-75 294.0
76 TraesCS3D01G231600 chr6B 85.714 70 6 4 2092 2159 604109806 604109739 4.290000e-08 71.3
77 TraesCS3D01G231600 chrUn 93.103 58 4 0 1 58 314145583 314145526 1.530000e-12 86.1
78 TraesCS3D01G231600 chr2B 97.917 48 1 0 8503 8550 140746874 140746827 5.500000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G231600 chr3D 317197816 317206372 8556 False 7544.000000 8013 100.000000 1 8557 2 chr3D.!!$F2 8556
1 TraesCS3D01G231600 chr3A 410107578 410114985 7407 True 2692.250000 5637 94.131500 603 8505 4 chr3A.!!$R1 7902
2 TraesCS3D01G231600 chr3B 401803298 401810359 7061 True 1486.285714 3328 93.239857 620 8505 7 chr3B.!!$R1 7885
3 TraesCS3D01G231600 chr3B 406649934 406650821 887 False 614.000000 614 79.428000 1325 2223 1 chr3B.!!$F1 898
4 TraesCS3D01G231600 chr4D 96907565 96912259 4694 True 1169.333333 1934 83.102333 714 5592 3 chr4D.!!$R3 4878
5 TraesCS3D01G231600 chr4A 479412044 479417186 5142 False 875.000000 1836 84.217000 1247 5583 4 chr4A.!!$F1 4336
6 TraesCS3D01G231600 chr4A 200055750 200056288 538 True 501.000000 501 83.455000 55 603 1 chr4A.!!$R2 548
7 TraesCS3D01G231600 chr4A 497814467 497819876 5409 True 432.450000 961 84.638250 2923 7008 4 chr4A.!!$R4 4085
8 TraesCS3D01G231600 chr4B 138299917 138306744 6827 True 934.000000 1074 82.283500 714 7588 4 chr4B.!!$R1 6874
9 TraesCS3D01G231600 chr4B 119858920 119859527 607 False 579.000000 579 84.142000 1235 1840 1 chr4B.!!$F1 605
10 TraesCS3D01G231600 chr7B 665542081 665542936 855 True 902.000000 902 85.814000 4731 5583 1 chr7B.!!$R2 852
11 TraesCS3D01G231600 chr5B 93459332 93460190 858 False 857.000000 857 84.890000 4728 5583 1 chr5B.!!$F1 855
12 TraesCS3D01G231600 chr2A 693642475 693643025 550 True 551.000000 551 84.755000 54 603 1 chr2A.!!$R1 549
13 TraesCS3D01G231600 chr5A 684628987 684629502 515 True 490.000000 490 84.139000 4739 5245 1 chr5A.!!$R2 506
14 TraesCS3D01G231600 chr6A 421221326 421221864 538 True 440.000000 440 81.555000 55 603 1 chr6A.!!$R1 548
15 TraesCS3D01G231600 chr1B 612399941 612400483 542 False 375.000000 375 79.342000 57 598 1 chr1B.!!$F1 541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
356 357 3.104512 CTGGTCATAGTGGGGAGTAACA 58.895 50.000 0.00 0.00 0.00 2.41 F
1119 1151 4.021981 GCAATTTACTGCCTTTGTTCTCCT 60.022 41.667 0.00 0.00 36.25 3.69 F
2174 2248 0.040157 TTGATGAACTTGCTGTGCGC 60.040 50.000 0.00 0.00 39.77 6.09 F
2492 2595 0.676782 AATGGACGTTACTGGCCAGC 60.677 55.000 33.06 15.65 33.26 4.85 F
4017 4983 1.295792 GTTCCGAGCACTGTTGTCAA 58.704 50.000 0.00 0.00 0.00 3.18 F
5678 9262 0.107831 TTTGTACAGGGCAGACGCTT 59.892 50.000 0.00 0.00 36.86 4.68 F
5679 9263 0.970640 TTGTACAGGGCAGACGCTTA 59.029 50.000 0.00 0.00 36.86 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1448 1498 0.323360 CCTTCTGGGGGCAAAATCGA 60.323 55.000 0.00 0.00 0.00 3.59 R
2478 2581 0.248289 AATACGCTGGCCAGTAACGT 59.752 50.000 30.74 30.74 40.53 3.99 R
3939 4900 0.172578 TCAGAATCCCACACGCGTAG 59.827 55.000 13.44 9.47 0.00 3.51 R
4211 7771 1.266718 TGTTGTCCGAGAGCAAAATGC 59.733 47.619 0.00 0.00 45.46 3.56 R
5746 9330 0.042731 TGCTAGGTGCTTAGGGAGGT 59.957 55.000 0.00 0.00 43.37 3.85 R
6722 10679 2.277084 CACTACTCCACGGGCAAATAC 58.723 52.381 0.00 0.00 0.00 1.89 R
7627 11645 2.309162 TGGATAATCCAACGAAACCCCA 59.691 45.455 0.00 0.00 45.00 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.686683 ATAACATTTTAATCCTTACAGTCTGCT 57.313 29.630 0.00 0.00 0.00 4.24
31 32 7.168219 ACATTTTAATCCTTACAGTCTGCTGA 58.832 34.615 0.00 0.00 45.28 4.26
32 33 7.119846 ACATTTTAATCCTTACAGTCTGCTGAC 59.880 37.037 15.36 15.36 45.28 3.51
45 46 5.838531 GTCTGCTGACTGTACCTTACTAT 57.161 43.478 15.81 0.00 39.94 2.12
46 47 6.939132 GTCTGCTGACTGTACCTTACTATA 57.061 41.667 15.81 0.00 39.94 1.31
47 48 6.727215 GTCTGCTGACTGTACCTTACTATAC 58.273 44.000 15.81 0.00 39.94 1.47
48 49 6.543100 GTCTGCTGACTGTACCTTACTATACT 59.457 42.308 15.81 0.00 39.94 2.12
49 50 7.067251 GTCTGCTGACTGTACCTTACTATACTT 59.933 40.741 15.81 0.00 39.94 2.24
50 51 7.067129 TCTGCTGACTGTACCTTACTATACTTG 59.933 40.741 0.00 0.00 0.00 3.16
51 52 5.978322 GCTGACTGTACCTTACTATACTTGC 59.022 44.000 0.00 0.00 0.00 4.01
52 53 6.183360 GCTGACTGTACCTTACTATACTTGCT 60.183 42.308 0.00 0.00 0.00 3.91
61 62 7.296098 ACCTTACTATACTTGCTCTTAGGCTA 58.704 38.462 0.00 0.00 0.00 3.93
64 65 8.763984 TTACTATACTTGCTCTTAGGCTAGTT 57.236 34.615 12.57 6.33 43.35 2.24
200 201 8.462016 ACATTATAGACTCATTTTGCTTTGGAC 58.538 33.333 0.00 0.00 0.00 4.02
258 259 6.370166 CCAAACACTTCTCTCCTCATTAACTC 59.630 42.308 0.00 0.00 0.00 3.01
259 260 6.926630 AACACTTCTCTCCTCATTAACTCT 57.073 37.500 0.00 0.00 0.00 3.24
276 277 9.831737 CATTAACTCTATGCCATATAAGCAAAC 57.168 33.333 5.05 0.00 44.83 2.93
277 278 6.884280 AACTCTATGCCATATAAGCAAACC 57.116 37.500 5.05 0.00 44.83 3.27
312 313 7.827819 TGTGCTATGTTACTTGCTAAGTTAG 57.172 36.000 5.47 5.47 42.81 2.34
315 316 7.760340 GTGCTATGTTACTTGCTAAGTTAGTCT 59.240 37.037 11.51 0.00 42.81 3.24
328 329 7.124298 TGCTAAGTTAGTCTCATTATGACCAGT 59.876 37.037 11.51 0.00 35.21 4.00
356 357 3.104512 CTGGTCATAGTGGGGAGTAACA 58.895 50.000 0.00 0.00 0.00 2.41
394 395 9.750125 CATGCATATGACACTAGTCTAAGTTAA 57.250 33.333 6.97 0.00 45.20 2.01
540 541 7.690256 ACCTCTTTCCTCATTAACTACATGTT 58.310 34.615 2.30 0.00 42.31 2.71
557 558 9.677567 ACTACATGTTACATAAGCAAAGTTTTG 57.322 29.630 2.30 0.28 41.03 2.44
592 593 8.632679 CGGTATGTTACTACCTAAGTTATTCCA 58.367 37.037 8.54 0.00 39.26 3.53
601 602 9.139734 ACTACCTAAGTTATTCCATTATGACGA 57.860 33.333 0.00 0.00 33.35 4.20
602 603 9.627395 CTACCTAAGTTATTCCATTATGACGAG 57.373 37.037 0.00 0.00 0.00 4.18
603 604 8.246430 ACCTAAGTTATTCCATTATGACGAGA 57.754 34.615 0.00 0.00 0.00 4.04
604 605 8.701895 ACCTAAGTTATTCCATTATGACGAGAA 58.298 33.333 0.00 0.00 0.00 2.87
605 606 9.542462 CCTAAGTTATTCCATTATGACGAGAAA 57.458 33.333 0.00 0.00 0.00 2.52
608 609 8.438676 AGTTATTCCATTATGACGAGAAAAGG 57.561 34.615 0.00 0.00 0.00 3.11
609 610 8.047310 AGTTATTCCATTATGACGAGAAAAGGT 58.953 33.333 0.00 0.00 0.00 3.50
610 611 9.321562 GTTATTCCATTATGACGAGAAAAGGTA 57.678 33.333 0.00 0.00 0.00 3.08
611 612 9.542462 TTATTCCATTATGACGAGAAAAGGTAG 57.458 33.333 0.00 0.00 0.00 3.18
612 613 6.540438 TCCATTATGACGAGAAAAGGTAGT 57.460 37.500 0.00 0.00 0.00 2.73
613 614 7.649533 TCCATTATGACGAGAAAAGGTAGTA 57.350 36.000 0.00 0.00 0.00 1.82
614 615 7.713750 TCCATTATGACGAGAAAAGGTAGTAG 58.286 38.462 0.00 0.00 0.00 2.57
615 616 7.341256 TCCATTATGACGAGAAAAGGTAGTAGT 59.659 37.037 0.00 0.00 0.00 2.73
616 617 8.627403 CCATTATGACGAGAAAAGGTAGTAGTA 58.373 37.037 0.00 0.00 0.00 1.82
617 618 9.448294 CATTATGACGAGAAAAGGTAGTAGTAC 57.552 37.037 0.00 0.00 0.00 2.73
618 619 8.798859 TTATGACGAGAAAAGGTAGTAGTACT 57.201 34.615 8.14 8.14 0.00 2.73
1119 1151 4.021981 GCAATTTACTGCCTTTGTTCTCCT 60.022 41.667 0.00 0.00 36.25 3.69
1448 1498 0.249955 GCTTGAAGGAGCAGCTCTCT 59.750 55.000 21.99 14.09 42.25 3.10
1544 1594 4.457257 GGAAAAGACTATGCTTGCTTCTGT 59.543 41.667 0.00 0.00 0.00 3.41
1553 1603 1.266989 GCTTGCTTCTGTAACGCCTTT 59.733 47.619 0.00 0.00 0.00 3.11
1586 1648 4.207891 TCACTTTGAGGCAGAAGGATAC 57.792 45.455 0.00 0.00 0.00 2.24
1612 1674 4.101448 GGACTGGGAGGCACGCAT 62.101 66.667 1.65 0.00 40.52 4.73
1627 1689 2.814604 CATGCATCGAGGGTCGGA 59.185 61.111 0.00 0.00 40.88 4.55
1628 1690 1.368950 CATGCATCGAGGGTCGGAT 59.631 57.895 0.00 0.00 40.88 4.18
1629 1691 0.668706 CATGCATCGAGGGTCGGATC 60.669 60.000 0.00 0.00 40.88 3.36
1655 1717 3.451894 GGATGGGTTGCAAGGGCG 61.452 66.667 0.00 0.00 45.35 6.13
1862 1924 3.499918 CCAACTCACTTGACAAGGTGATC 59.500 47.826 19.16 0.00 40.90 2.92
1914 1977 6.089249 ACAATGATGGTTTGTTTCCTTCTC 57.911 37.500 0.00 0.00 33.64 2.87
1918 1981 5.200483 TGATGGTTTGTTTCCTTCTCTTGT 58.800 37.500 0.00 0.00 32.56 3.16
1924 1987 6.531594 GGTTTGTTTCCTTCTCTTGTTCTTTG 59.468 38.462 0.00 0.00 0.00 2.77
1943 2006 8.784043 GTTCTTTGTATGTTCTGTTCTTATGGT 58.216 33.333 0.00 0.00 0.00 3.55
1944 2007 8.918202 TCTTTGTATGTTCTGTTCTTATGGTT 57.082 30.769 0.00 0.00 0.00 3.67
1945 2008 8.999431 TCTTTGTATGTTCTGTTCTTATGGTTC 58.001 33.333 0.00 0.00 0.00 3.62
1947 2010 8.918202 TTGTATGTTCTGTTCTTATGGTTCTT 57.082 30.769 0.00 0.00 0.00 2.52
1948 2011 8.322906 TGTATGTTCTGTTCTTATGGTTCTTG 57.677 34.615 0.00 0.00 0.00 3.02
2082 2156 6.212934 CTCGTAAGCATTCTCAGATGATTG 57.787 41.667 0.00 0.00 36.43 2.67
2111 2185 1.110442 ATCAGAGGCTCCGTTCAGAG 58.890 55.000 11.71 0.00 36.92 3.35
2174 2248 0.040157 TTGATGAACTTGCTGTGCGC 60.040 50.000 0.00 0.00 39.77 6.09
2324 2398 7.648908 TGATTGTTTCTGTGCTTCTTTTACATG 59.351 33.333 0.00 0.00 0.00 3.21
2441 2543 7.063191 CACGATTCAATTCATGCCACATTTTTA 59.937 33.333 0.00 0.00 0.00 1.52
2492 2595 0.676782 AATGGACGTTACTGGCCAGC 60.677 55.000 33.06 15.65 33.26 4.85
2592 2717 7.502226 TCATCCACTCTTGTTTATCTTGTGTTT 59.498 33.333 0.00 0.00 0.00 2.83
2593 2718 7.639113 TCCACTCTTGTTTATCTTGTGTTTT 57.361 32.000 0.00 0.00 0.00 2.43
2636 2765 2.216881 TCCCCAATTCTCCACCATCAT 58.783 47.619 0.00 0.00 0.00 2.45
2659 2788 6.472686 TGTAACTTTAAATGTGGGTTGCTT 57.527 33.333 6.82 0.00 0.00 3.91
2668 2797 5.705609 AATGTGGGTTGCTTGTACTTAAG 57.294 39.130 0.00 0.00 0.00 1.85
2726 2855 7.350744 TCTAATGCAAATATCATGCCTTTGT 57.649 32.000 10.07 1.50 43.16 2.83
2738 2867 2.101783 TGCCTTTGTATGCTTCCATGG 58.898 47.619 4.97 4.97 32.85 3.66
2809 2938 8.744652 GCATACGATTATCTGGGCTATATCTAT 58.255 37.037 0.00 0.00 0.00 1.98
2821 2950 7.977818 TGGGCTATATCTATGTTCAAGATTGT 58.022 34.615 0.00 0.00 35.36 2.71
2963 3097 6.754209 TGAATTTACTTTTGCAACAATGACGT 59.246 30.769 0.00 0.00 0.00 4.34
3072 3211 9.161629 CATGTCTTGTATGTTGTCCTTATACAA 57.838 33.333 0.00 0.00 42.04 2.41
3118 3260 7.068839 TCCAATCTACCACTTATCTGTCTCTTC 59.931 40.741 0.00 0.00 0.00 2.87
3120 3262 9.126151 CAATCTACCACTTATCTGTCTCTTCTA 57.874 37.037 0.00 0.00 0.00 2.10
3128 3272 4.589216 ATCTGTCTCTTCTATCTGCTGC 57.411 45.455 0.00 0.00 0.00 5.25
3247 3406 9.928236 GCTCTTCTATCAGATTTACACAATTTC 57.072 33.333 0.00 0.00 0.00 2.17
3293 3452 8.592809 AGTCTGATTTTACCAAAATAAATGCCA 58.407 29.630 0.00 0.00 40.97 4.92
3364 3523 7.013559 CCATCCATCAAAATAATCTGTGTAGCA 59.986 37.037 0.00 0.00 0.00 3.49
3574 3734 2.937799 GTTCGGTCGAGATCTACTGACT 59.062 50.000 17.07 0.00 30.82 3.41
3648 4594 2.827322 TGTAGTAGCCCGCTTTCTTGTA 59.173 45.455 0.00 0.00 0.00 2.41
3720 4671 8.365399 TGATCGGTTTGACATTACTATTCATC 57.635 34.615 0.00 0.00 0.00 2.92
3724 4675 7.277760 TCGGTTTGACATTACTATTCATCTGTG 59.722 37.037 0.00 0.00 0.00 3.66
3742 4693 3.657634 TGTGCTCTGCTCAAAGTTCTAG 58.342 45.455 0.00 0.00 0.00 2.43
3810 4768 5.191722 TGCTGTTTCCTAATTGGACTCCTAT 59.808 40.000 0.00 0.00 46.14 2.57
3930 4889 8.607441 ATGATTCAAGCGTAAATGCTCTTATA 57.393 30.769 0.00 0.00 46.60 0.98
3939 4900 8.989980 AGCGTAAATGCTCTTATATTTTAGGAC 58.010 33.333 0.00 0.00 42.95 3.85
4017 4983 1.295792 GTTCCGAGCACTGTTGTCAA 58.704 50.000 0.00 0.00 0.00 3.18
4098 5075 5.836347 TGTTGATGAATCTCTATCGACCAG 58.164 41.667 0.00 0.00 37.05 4.00
4104 5082 6.715347 TGAATCTCTATCGACCAGATTTCA 57.285 37.500 13.72 14.03 40.66 2.69
4134 7687 2.293677 TGATGGATCTTCACCGTTCG 57.706 50.000 0.00 0.00 0.00 3.95
4135 7688 1.822371 TGATGGATCTTCACCGTTCGA 59.178 47.619 0.00 0.00 0.00 3.71
4337 7898 2.080693 CAGGTACAAAATGTAGGCGCA 58.919 47.619 10.83 0.00 32.84 6.09
4780 8348 4.449743 TGTTGTGGTTTATACAGAACGAGC 59.550 41.667 0.00 0.00 42.87 5.03
4941 8519 3.253188 TGCCTTACTGTGCTGAAAATGAC 59.747 43.478 0.00 0.00 0.00 3.06
5439 9023 7.823149 ATAAAATGTCAAAAGAAGATGCAGC 57.177 32.000 0.00 0.00 0.00 5.25
5453 9037 3.890674 CAGCCGTTACTGCTTCCC 58.109 61.111 0.00 0.00 36.81 3.97
5583 9167 6.486253 TTTATGCACTTGCTGTTCTCTAAG 57.514 37.500 2.33 0.00 42.66 2.18
5584 9168 2.771089 TGCACTTGCTGTTCTCTAAGG 58.229 47.619 2.33 0.00 42.66 2.69
5593 9177 3.306780 GCTGTTCTCTAAGGCCTTGTACA 60.307 47.826 28.77 18.65 0.00 2.90
5594 9178 4.802918 GCTGTTCTCTAAGGCCTTGTACAA 60.803 45.833 28.77 12.43 0.00 2.41
5598 9182 3.263170 TCTCTAAGGCCTTGTACAATGCA 59.737 43.478 29.20 13.85 34.30 3.96
5599 9183 4.009675 CTCTAAGGCCTTGTACAATGCAA 58.990 43.478 29.20 16.92 34.30 4.08
5600 9184 4.009675 TCTAAGGCCTTGTACAATGCAAG 58.990 43.478 29.20 23.00 42.00 4.01
5603 9187 2.756760 AGGCCTTGTACAATGCAAGATG 59.243 45.455 29.20 8.77 44.29 2.90
5604 9188 2.533266 GCCTTGTACAATGCAAGATGC 58.467 47.619 25.28 8.66 44.29 3.91
5605 9189 2.165030 GCCTTGTACAATGCAAGATGCT 59.835 45.455 25.28 0.00 45.31 3.79
5606 9190 3.367703 GCCTTGTACAATGCAAGATGCTT 60.368 43.478 25.28 0.00 45.31 3.91
5607 9191 4.142403 GCCTTGTACAATGCAAGATGCTTA 60.142 41.667 25.28 0.00 45.31 3.09
5609 9193 5.449588 CCTTGTACAATGCAAGATGCTTAGG 60.450 44.000 9.13 0.00 45.31 2.69
5610 9194 4.842574 TGTACAATGCAAGATGCTTAGGA 58.157 39.130 3.78 0.00 45.31 2.94
5611 9195 4.877823 TGTACAATGCAAGATGCTTAGGAG 59.122 41.667 3.78 0.00 45.31 3.69
5613 9197 4.197750 ACAATGCAAGATGCTTAGGAGAG 58.802 43.478 3.78 0.00 45.31 3.20
5614 9198 2.996249 TGCAAGATGCTTAGGAGAGG 57.004 50.000 3.78 0.00 45.31 3.69
5617 9201 2.559440 CAAGATGCTTAGGAGAGGTGC 58.441 52.381 0.00 0.00 0.00 5.01
5620 9204 2.170187 AGATGCTTAGGAGAGGTGCTTG 59.830 50.000 0.00 0.00 0.00 4.01
5621 9205 0.615331 TGCTTAGGAGAGGTGCTTGG 59.385 55.000 0.00 0.00 0.00 3.61
5622 9206 0.905357 GCTTAGGAGAGGTGCTTGGA 59.095 55.000 0.00 0.00 0.00 3.53
5623 9207 1.134551 GCTTAGGAGAGGTGCTTGGAG 60.135 57.143 0.00 0.00 0.00 3.86
5627 9211 2.273619 AGGAGAGGTGCTTGGAGAAAT 58.726 47.619 0.00 0.00 0.00 2.17
5628 9212 3.454858 AGGAGAGGTGCTTGGAGAAATA 58.545 45.455 0.00 0.00 0.00 1.40
5629 9213 3.846588 AGGAGAGGTGCTTGGAGAAATAA 59.153 43.478 0.00 0.00 0.00 1.40
5630 9214 4.289672 AGGAGAGGTGCTTGGAGAAATAAA 59.710 41.667 0.00 0.00 0.00 1.40
5631 9215 4.396478 GGAGAGGTGCTTGGAGAAATAAAC 59.604 45.833 0.00 0.00 0.00 2.01
5632 9216 4.336280 AGAGGTGCTTGGAGAAATAAACC 58.664 43.478 0.00 0.00 0.00 3.27
5634 9218 4.082125 AGGTGCTTGGAGAAATAAACCAG 58.918 43.478 0.00 0.00 35.08 4.00
5636 9220 3.510388 GCTTGGAGAAATAAACCAGGC 57.490 47.619 0.00 0.00 46.05 4.85
5639 9223 5.728637 CTTGGAGAAATAAACCAGGCTTT 57.271 39.130 0.00 0.00 35.08 3.51
5643 9227 4.772624 GGAGAAATAAACCAGGCTTTCCTT 59.227 41.667 0.00 0.00 41.93 3.36
5644 9228 5.949952 GGAGAAATAAACCAGGCTTTCCTTA 59.050 40.000 0.00 0.00 41.93 2.69
5645 9229 6.436218 GGAGAAATAAACCAGGCTTTCCTTAA 59.564 38.462 0.00 0.00 41.93 1.85
5646 9230 7.363007 GGAGAAATAAACCAGGCTTTCCTTAAG 60.363 40.741 0.00 0.00 41.93 1.85
5667 9251 3.740044 CACCGGTGCTTATTTGTACAG 57.260 47.619 24.02 0.00 0.00 2.74
5668 9252 2.418628 CACCGGTGCTTATTTGTACAGG 59.581 50.000 24.02 0.00 41.71 4.00
5669 9253 2.014128 CCGGTGCTTATTTGTACAGGG 58.986 52.381 0.00 0.00 35.20 4.45
5670 9254 1.400494 CGGTGCTTATTTGTACAGGGC 59.600 52.381 0.00 0.00 0.00 5.19
5671 9255 2.442413 GGTGCTTATTTGTACAGGGCA 58.558 47.619 0.00 1.26 0.00 5.36
5672 9256 2.423538 GGTGCTTATTTGTACAGGGCAG 59.576 50.000 0.00 0.00 0.00 4.85
5674 9258 3.127030 GTGCTTATTTGTACAGGGCAGAC 59.873 47.826 0.00 0.00 0.00 3.51
5675 9259 2.351726 GCTTATTTGTACAGGGCAGACG 59.648 50.000 0.00 0.00 0.00 4.18
5676 9260 2.018542 TATTTGTACAGGGCAGACGC 57.981 50.000 0.00 0.00 37.44 5.19
5678 9262 0.107831 TTTGTACAGGGCAGACGCTT 59.892 50.000 0.00 0.00 36.86 4.68
5679 9263 0.970640 TTGTACAGGGCAGACGCTTA 59.029 50.000 0.00 0.00 36.86 3.09
5681 9265 1.553248 TGTACAGGGCAGACGCTTAAT 59.447 47.619 0.00 0.00 36.86 1.40
5682 9266 2.027561 TGTACAGGGCAGACGCTTAATT 60.028 45.455 0.00 0.00 36.86 1.40
5684 9268 2.906354 ACAGGGCAGACGCTTAATTAG 58.094 47.619 0.00 0.00 36.86 1.73
5685 9269 2.213499 CAGGGCAGACGCTTAATTAGG 58.787 52.381 0.00 0.00 36.86 2.69
5694 9278 2.395654 CGCTTAATTAGGCGTCTCTCC 58.604 52.381 28.00 0.00 45.15 3.71
5695 9279 2.034812 CGCTTAATTAGGCGTCTCTCCT 59.965 50.000 28.00 0.00 45.15 3.69
5696 9280 3.385577 GCTTAATTAGGCGTCTCTCCTG 58.614 50.000 3.59 0.00 35.21 3.86
5697 9281 3.181474 GCTTAATTAGGCGTCTCTCCTGT 60.181 47.826 3.59 0.00 35.21 4.00
5698 9282 4.037684 GCTTAATTAGGCGTCTCTCCTGTA 59.962 45.833 3.59 0.00 35.21 2.74
5699 9283 5.764131 CTTAATTAGGCGTCTCTCCTGTAG 58.236 45.833 0.00 0.00 35.21 2.74
5701 9285 3.361281 TTAGGCGTCTCTCCTGTAGAA 57.639 47.619 0.00 0.00 35.21 2.10
5702 9286 2.217510 AGGCGTCTCTCCTGTAGAAA 57.782 50.000 0.00 0.00 32.46 2.52
5704 9288 3.899726 AGGCGTCTCTCCTGTAGAAATA 58.100 45.455 0.00 0.00 32.46 1.40
5705 9289 4.279145 AGGCGTCTCTCCTGTAGAAATAA 58.721 43.478 0.00 0.00 32.46 1.40
5706 9290 4.339814 AGGCGTCTCTCCTGTAGAAATAAG 59.660 45.833 0.00 0.00 32.46 1.73
5707 9291 4.045783 GCGTCTCTCCTGTAGAAATAAGC 58.954 47.826 0.00 0.00 32.46 3.09
5709 9293 5.038033 CGTCTCTCCTGTAGAAATAAGCAC 58.962 45.833 0.00 0.00 32.46 4.40
5711 9295 6.039616 GTCTCTCCTGTAGAAATAAGCACTG 58.960 44.000 0.00 0.00 32.46 3.66
5712 9296 5.127845 TCTCTCCTGTAGAAATAAGCACTGG 59.872 44.000 0.00 0.00 32.46 4.00
5713 9297 4.777896 TCTCCTGTAGAAATAAGCACTGGT 59.222 41.667 0.00 0.00 33.23 4.00
5714 9298 4.832248 TCCTGTAGAAATAAGCACTGGTG 58.168 43.478 0.00 0.00 33.23 4.17
5729 9313 2.554032 ACTGGTGCTTCAGAAAAATCCG 59.446 45.455 12.54 0.00 38.11 4.18
5731 9315 1.886542 GGTGCTTCAGAAAAATCCGGT 59.113 47.619 0.00 0.00 0.00 5.28
5733 9317 3.243737 GGTGCTTCAGAAAAATCCGGTTT 60.244 43.478 0.00 0.00 0.00 3.27
5734 9318 4.022676 GGTGCTTCAGAAAAATCCGGTTTA 60.023 41.667 0.00 0.00 0.00 2.01
5736 9320 6.156519 GTGCTTCAGAAAAATCCGGTTTATT 58.843 36.000 0.00 0.00 0.00 1.40
5739 9323 7.713073 TGCTTCAGAAAAATCCGGTTTATTTTT 59.287 29.630 19.49 19.49 44.88 1.94
5748 9332 9.701098 AAAATCCGGTTTATTTTTCTAAGAACC 57.299 29.630 0.00 0.00 33.78 3.62
5749 9333 8.645814 AATCCGGTTTATTTTTCTAAGAACCT 57.354 30.769 0.00 0.00 35.54 3.50
5750 9334 7.677454 TCCGGTTTATTTTTCTAAGAACCTC 57.323 36.000 0.00 0.00 35.54 3.85
5751 9335 6.656270 TCCGGTTTATTTTTCTAAGAACCTCC 59.344 38.462 0.00 0.00 35.54 4.30
5752 9336 6.127814 CCGGTTTATTTTTCTAAGAACCTCCC 60.128 42.308 0.00 0.00 35.54 4.30
5754 9338 7.825761 CGGTTTATTTTTCTAAGAACCTCCCTA 59.174 37.037 0.00 0.00 35.54 3.53
5755 9339 9.524496 GGTTTATTTTTCTAAGAACCTCCCTAA 57.476 33.333 0.00 0.00 34.99 2.69
5757 9341 8.803397 TTATTTTTCTAAGAACCTCCCTAAGC 57.197 34.615 0.00 0.00 0.00 3.09
5758 9342 5.836024 TTTTCTAAGAACCTCCCTAAGCA 57.164 39.130 0.00 0.00 0.00 3.91
5759 9343 4.820894 TTCTAAGAACCTCCCTAAGCAC 57.179 45.455 0.00 0.00 0.00 4.40
5761 9345 2.046280 AAGAACCTCCCTAAGCACCT 57.954 50.000 0.00 0.00 0.00 4.00
5763 9347 2.753247 AGAACCTCCCTAAGCACCTAG 58.247 52.381 0.00 0.00 0.00 3.02
5791 9417 6.837312 TGTACAAGGCCTAATAGCATGTAAT 58.163 36.000 5.16 0.00 37.92 1.89
5807 9433 7.201145 AGCATGTAATCTTGAGCAATCAATTC 58.799 34.615 0.00 0.00 0.00 2.17
5815 9441 2.821378 TGAGCAATCAATTCCACAGTGG 59.179 45.455 14.19 14.19 39.43 4.00
5816 9442 2.821969 GAGCAATCAATTCCACAGTGGT 59.178 45.455 19.65 0.00 39.03 4.16
5837 9463 4.329801 GGTTTTTCTGTTCTGCAAACCTTG 59.670 41.667 4.30 0.00 42.11 3.61
6016 9663 6.360370 TCAACTGTAGGTAGCAAGAGAAAT 57.640 37.500 0.00 0.00 0.00 2.17
6142 9825 5.785423 CCCATCTATTACATCCTTGGTCCTA 59.215 44.000 0.00 0.00 0.00 2.94
6148 9831 9.615660 TCTATTACATCCTTGGTCCTACATTAT 57.384 33.333 0.00 0.00 0.00 1.28
6191 9874 5.047377 GGAAACCAAGAAACAATCAGCCATA 60.047 40.000 0.00 0.00 0.00 2.74
6193 9876 5.391312 ACCAAGAAACAATCAGCCATAAC 57.609 39.130 0.00 0.00 0.00 1.89
6203 9886 1.070914 TCAGCCATAACGTGTCACCAA 59.929 47.619 0.00 0.00 0.00 3.67
6526 10480 3.733443 AAGCAACATTGTTGAGTTCCC 57.267 42.857 29.04 12.71 0.00 3.97
6527 10481 1.963515 AGCAACATTGTTGAGTTCCCC 59.036 47.619 29.04 12.08 0.00 4.81
6556 10510 6.090763 GGCAAAACTTTATGTTGATGTTAGCC 59.909 38.462 0.00 0.00 39.13 3.93
6638 10593 4.577875 ACTTGCTTTCTTCCATCTCTGAG 58.422 43.478 0.00 0.00 0.00 3.35
6722 10679 7.728847 TGGAAATCGGAACATAATACATCTG 57.271 36.000 0.00 0.00 0.00 2.90
6754 10711 0.396811 GAGTAGTGTGTGGGGCAACT 59.603 55.000 0.00 0.00 0.00 3.16
6950 10910 8.969121 TGTTGAAATTTGACATGATACATGAC 57.031 30.769 16.86 11.77 0.00 3.06
6951 10911 8.795513 TGTTGAAATTTGACATGATACATGACT 58.204 29.630 16.86 0.00 0.00 3.41
6954 10914 8.671028 TGAAATTTGACATGATACATGACTCTG 58.329 33.333 16.86 0.00 0.00 3.35
6955 10915 6.615264 ATTTGACATGATACATGACTCTGC 57.385 37.500 16.86 2.28 0.00 4.26
6956 10916 5.349061 TTGACATGATACATGACTCTGCT 57.651 39.130 16.86 0.00 0.00 4.24
6957 10917 4.690122 TGACATGATACATGACTCTGCTG 58.310 43.478 16.86 0.00 0.00 4.41
7016 10995 3.039202 CTTGTTCGACGGGCATGGC 62.039 63.158 11.56 11.56 0.00 4.40
7030 11009 1.603678 GCATGGCAAAGTCCTTGTGTG 60.604 52.381 0.00 0.00 37.36 3.82
7097 11085 5.055642 TGAAGTAGGTGTGTCTTACATCG 57.944 43.478 0.00 0.00 45.33 3.84
7101 11089 5.227908 AGTAGGTGTGTCTTACATCGTTTG 58.772 41.667 0.00 0.00 45.33 2.93
7201 11189 7.228108 AGACACTATGCAATTCCTGTATCAATG 59.772 37.037 0.00 0.00 32.02 2.82
7269 11284 5.362556 TTGAAGCTGTTATTGCTCTGTTC 57.637 39.130 0.00 0.00 40.22 3.18
7314 11331 7.775561 GGAGGAGAATGTTTATCTAATGGTGTT 59.224 37.037 0.00 0.00 0.00 3.32
7577 11594 6.602410 TGAGCCAAGATATCTAGATTCCTG 57.398 41.667 11.25 8.19 0.00 3.86
7578 11595 6.318112 TGAGCCAAGATATCTAGATTCCTGA 58.682 40.000 11.25 0.00 0.00 3.86
7579 11596 6.784473 TGAGCCAAGATATCTAGATTCCTGAA 59.216 38.462 11.25 0.00 0.00 3.02
7611 11628 7.254227 ACAAGAAGTGCGTTTCTGTTATTTA 57.746 32.000 3.59 0.00 37.48 1.40
7636 11668 6.486657 ACTCATGAATGTATATTGGGGTTTCG 59.513 38.462 0.00 0.00 0.00 3.46
7646 11678 6.894339 ATATTGGGGTTTCGTTGGATTATC 57.106 37.500 0.00 0.00 0.00 1.75
7770 11804 5.938125 ACGGCTACTAGTTTGTTGATTTCAT 59.062 36.000 0.00 0.00 0.00 2.57
7771 11805 6.092259 ACGGCTACTAGTTTGTTGATTTCATC 59.908 38.462 0.00 0.00 0.00 2.92
7772 11806 6.092122 CGGCTACTAGTTTGTTGATTTCATCA 59.908 38.462 0.00 0.00 37.55 3.07
7773 11807 7.201644 CGGCTACTAGTTTGTTGATTTCATCAT 60.202 37.037 0.00 0.00 39.39 2.45
7774 11808 8.462016 GGCTACTAGTTTGTTGATTTCATCATT 58.538 33.333 0.00 0.00 39.39 2.57
7775 11809 9.846248 GCTACTAGTTTGTTGATTTCATCATTT 57.154 29.630 0.00 0.00 39.39 2.32
7800 11834 2.696989 CATGTGATGCCTGGTGTAGA 57.303 50.000 0.00 0.00 0.00 2.59
7801 11835 2.558378 CATGTGATGCCTGGTGTAGAG 58.442 52.381 0.00 0.00 0.00 2.43
7802 11836 0.250234 TGTGATGCCTGGTGTAGAGC 59.750 55.000 0.00 0.00 0.00 4.09
7803 11837 0.250234 GTGATGCCTGGTGTAGAGCA 59.750 55.000 0.00 0.00 37.13 4.26
7804 11838 1.134280 GTGATGCCTGGTGTAGAGCAT 60.134 52.381 0.00 0.00 42.32 3.79
7825 11859 0.880278 GACTGCTTGGTGCTCGACAA 60.880 55.000 0.00 0.00 43.37 3.18
7837 11871 2.346803 GCTCGACAAGCCTAACAATCA 58.653 47.619 0.00 0.00 45.92 2.57
7870 11904 3.700538 TGCTGGAAACATGCTTATCCTT 58.299 40.909 0.00 0.00 41.51 3.36
7871 11905 3.444742 TGCTGGAAACATGCTTATCCTTG 59.555 43.478 0.00 0.00 41.51 3.61
7872 11906 3.445096 GCTGGAAACATGCTTATCCTTGT 59.555 43.478 0.00 0.00 41.51 3.16
7873 11907 4.082026 GCTGGAAACATGCTTATCCTTGTT 60.082 41.667 0.00 0.00 41.51 2.83
7874 11908 5.643379 TGGAAACATGCTTATCCTTGTTC 57.357 39.130 0.00 0.00 33.56 3.18
7875 11909 5.076182 TGGAAACATGCTTATCCTTGTTCA 58.924 37.500 0.00 0.00 33.56 3.18
7888 11922 9.823647 CTTATCCTTGTTCAGATATTGTGTACT 57.176 33.333 0.00 0.00 0.00 2.73
7891 11925 8.362464 TCCTTGTTCAGATATTGTGTACTACT 57.638 34.615 0.00 0.00 0.00 2.57
7892 11926 8.467598 TCCTTGTTCAGATATTGTGTACTACTC 58.532 37.037 0.00 0.00 0.00 2.59
7893 11927 7.707035 CCTTGTTCAGATATTGTGTACTACTCC 59.293 40.741 0.00 0.00 0.00 3.85
7894 11928 7.108841 TGTTCAGATATTGTGTACTACTCCC 57.891 40.000 0.00 0.00 0.00 4.30
7895 11929 6.895756 TGTTCAGATATTGTGTACTACTCCCT 59.104 38.462 0.00 0.00 0.00 4.20
7896 11930 7.068348 TGTTCAGATATTGTGTACTACTCCCTC 59.932 40.741 0.00 0.00 0.00 4.30
7897 11931 6.069331 TCAGATATTGTGTACTACTCCCTCC 58.931 44.000 0.00 0.00 0.00 4.30
7898 11932 5.048643 CAGATATTGTGTACTACTCCCTCCG 60.049 48.000 0.00 0.00 0.00 4.63
7899 11933 2.592102 TTGTGTACTACTCCCTCCGT 57.408 50.000 0.00 0.00 0.00 4.69
7900 11934 2.592102 TGTGTACTACTCCCTCCGTT 57.408 50.000 0.00 0.00 0.00 4.44
7901 11935 2.440409 TGTGTACTACTCCCTCCGTTC 58.560 52.381 0.00 0.00 0.00 3.95
7902 11936 1.747924 GTGTACTACTCCCTCCGTTCC 59.252 57.143 0.00 0.00 0.00 3.62
7903 11937 1.637553 TGTACTACTCCCTCCGTTCCT 59.362 52.381 0.00 0.00 0.00 3.36
7904 11938 2.846206 TGTACTACTCCCTCCGTTCCTA 59.154 50.000 0.00 0.00 0.00 2.94
7905 11939 3.266772 TGTACTACTCCCTCCGTTCCTAA 59.733 47.826 0.00 0.00 0.00 2.69
7906 11940 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
7907 11941 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
7908 11942 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
7909 11943 4.892345 ACTACTCCCTCCGTTCCTAAATAC 59.108 45.833 0.00 0.00 0.00 1.89
7910 11944 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
7911 11945 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
7912 11946 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
7913 11947 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
7914 11948 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
7915 11949 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
7916 11950 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
7917 11951 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
7918 11952 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
7919 11953 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
7920 11954 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
7921 11955 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
7922 11956 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
7923 11957 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
7924 11958 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
7925 11959 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
7926 11960 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
7927 11961 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
7929 11963 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
7930 11964 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
7931 11965 8.814038 ATACTTGTCTTTCTAGGCATTTCAAT 57.186 30.769 0.00 0.00 35.56 2.57
7932 11966 9.905713 ATACTTGTCTTTCTAGGCATTTCAATA 57.094 29.630 0.00 0.00 35.56 1.90
7933 11967 8.635765 ACTTGTCTTTCTAGGCATTTCAATAA 57.364 30.769 0.00 0.00 35.56 1.40
7934 11968 8.734386 ACTTGTCTTTCTAGGCATTTCAATAAG 58.266 33.333 0.00 0.00 35.56 1.73
7935 11969 8.635765 TTGTCTTTCTAGGCATTTCAATAAGT 57.364 30.769 0.00 0.00 35.56 2.24
7936 11970 8.044060 TGTCTTTCTAGGCATTTCAATAAGTG 57.956 34.615 0.00 0.00 29.10 3.16
7937 11971 7.882791 TGTCTTTCTAGGCATTTCAATAAGTGA 59.117 33.333 0.00 0.00 29.10 3.41
7938 11972 8.178313 GTCTTTCTAGGCATTTCAATAAGTGAC 58.822 37.037 0.00 0.00 35.39 3.67
7939 11973 8.103305 TCTTTCTAGGCATTTCAATAAGTGACT 58.897 33.333 0.00 0.00 42.81 3.41
7940 11974 9.383519 CTTTCTAGGCATTTCAATAAGTGACTA 57.616 33.333 0.00 0.00 38.81 2.59
7941 11975 8.718102 TTCTAGGCATTTCAATAAGTGACTAC 57.282 34.615 0.00 0.00 38.81 2.73
7942 11976 7.847096 TCTAGGCATTTCAATAAGTGACTACA 58.153 34.615 0.00 0.00 38.81 2.74
7943 11977 8.486210 TCTAGGCATTTCAATAAGTGACTACAT 58.514 33.333 0.00 0.00 38.81 2.29
7944 11978 9.764363 CTAGGCATTTCAATAAGTGACTACATA 57.236 33.333 0.00 0.00 38.81 2.29
7945 11979 8.438676 AGGCATTTCAATAAGTGACTACATAC 57.561 34.615 0.00 0.00 38.81 2.39
7946 11980 7.224753 AGGCATTTCAATAAGTGACTACATACG 59.775 37.037 0.00 0.00 38.81 3.06
7947 11981 7.345192 GCATTTCAATAAGTGACTACATACGG 58.655 38.462 0.00 0.00 35.39 4.02
7948 11982 7.223971 GCATTTCAATAAGTGACTACATACGGA 59.776 37.037 0.00 0.00 35.39 4.69
7949 11983 8.755941 CATTTCAATAAGTGACTACATACGGAG 58.244 37.037 0.00 0.00 35.39 4.63
7950 11984 7.400599 TTCAATAAGTGACTACATACGGAGT 57.599 36.000 0.00 0.00 39.84 3.85
7951 11985 8.510243 TTCAATAAGTGACTACATACGGAGTA 57.490 34.615 0.00 0.00 41.66 2.59
7952 11986 8.959548 TTCAATAAGTGACTACATACGGAGTAA 58.040 33.333 0.00 0.00 41.03 2.24
7969 12003 8.699283 ACGGAGTAAAATAAGTGAATCTACAC 57.301 34.615 0.00 0.00 41.94 2.90
7970 12004 8.529476 ACGGAGTAAAATAAGTGAATCTACACT 58.471 33.333 0.00 0.00 46.76 3.55
8010 12044 8.763049 CATACATCCGTATGTGATAGTCATTT 57.237 34.615 3.56 0.00 46.70 2.32
8011 12045 8.650714 CATACATCCGTATGTGATAGTCATTTG 58.349 37.037 3.56 0.00 46.70 2.32
8012 12046 6.816136 ACATCCGTATGTGATAGTCATTTGA 58.184 36.000 0.00 0.00 44.79 2.69
8013 12047 7.272244 ACATCCGTATGTGATAGTCATTTGAA 58.728 34.615 0.00 0.00 44.79 2.69
8014 12048 7.768582 ACATCCGTATGTGATAGTCATTTGAAA 59.231 33.333 0.00 0.00 44.79 2.69
8015 12049 8.777413 CATCCGTATGTGATAGTCATTTGAAAT 58.223 33.333 0.00 0.00 0.00 2.17
8016 12050 8.141835 TCCGTATGTGATAGTCATTTGAAATG 57.858 34.615 11.54 11.54 0.00 2.32
8017 12051 6.852853 CCGTATGTGATAGTCATTTGAAATGC 59.147 38.462 12.86 8.33 0.00 3.56
8018 12052 6.852853 CGTATGTGATAGTCATTTGAAATGCC 59.147 38.462 12.86 1.61 0.00 4.40
8019 12053 7.254898 CGTATGTGATAGTCATTTGAAATGCCT 60.255 37.037 12.86 9.73 0.00 4.75
8020 12054 9.056005 GTATGTGATAGTCATTTGAAATGCCTA 57.944 33.333 10.59 10.59 0.00 3.93
8021 12055 7.558161 TGTGATAGTCATTTGAAATGCCTAG 57.442 36.000 13.20 0.00 0.00 3.02
8022 12056 7.337938 TGTGATAGTCATTTGAAATGCCTAGA 58.662 34.615 13.20 1.78 0.00 2.43
8023 12057 7.828717 TGTGATAGTCATTTGAAATGCCTAGAA 59.171 33.333 13.20 2.99 0.00 2.10
8024 12058 8.677300 GTGATAGTCATTTGAAATGCCTAGAAA 58.323 33.333 13.20 0.91 0.00 2.52
8025 12059 8.896744 TGATAGTCATTTGAAATGCCTAGAAAG 58.103 33.333 13.20 0.00 0.00 2.62
8026 12060 9.113838 GATAGTCATTTGAAATGCCTAGAAAGA 57.886 33.333 13.20 0.00 0.00 2.52
8027 12061 7.150783 AGTCATTTGAAATGCCTAGAAAGAC 57.849 36.000 12.86 3.23 0.00 3.01
8028 12062 6.716628 AGTCATTTGAAATGCCTAGAAAGACA 59.283 34.615 12.86 0.00 0.00 3.41
8029 12063 7.231317 AGTCATTTGAAATGCCTAGAAAGACAA 59.769 33.333 12.86 0.00 0.00 3.18
8030 12064 7.540055 GTCATTTGAAATGCCTAGAAAGACAAG 59.460 37.037 12.86 0.00 0.00 3.16
8031 12065 6.959639 TTTGAAATGCCTAGAAAGACAAGT 57.040 33.333 0.00 0.00 0.00 3.16
8032 12066 8.514594 CATTTGAAATGCCTAGAAAGACAAGTA 58.485 33.333 4.82 0.00 0.00 2.24
8033 12067 8.635765 TTTGAAATGCCTAGAAAGACAAGTAT 57.364 30.769 0.00 0.00 0.00 2.12
8034 12068 8.635765 TTGAAATGCCTAGAAAGACAAGTATT 57.364 30.769 0.00 0.00 0.00 1.89
8035 12069 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
8036 12070 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
8038 12072 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
8039 12073 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
8040 12074 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
8041 12075 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
8042 12076 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
8043 12077 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
8044 12078 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
8045 12079 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
8046 12080 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
8047 12081 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
8048 12082 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
8049 12083 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
8050 12084 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
8051 12085 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
8052 12086 5.139001 AGTATTTAGGAACGGAGGGAGTAG 58.861 45.833 0.00 0.00 0.00 2.57
8053 12087 3.463048 TTTAGGAACGGAGGGAGTAGT 57.537 47.619 0.00 0.00 0.00 2.73
8085 12119 2.137523 GGAAAACCATTGCAAGCACAG 58.862 47.619 4.94 0.00 0.00 3.66
8092 12126 3.181452 ACCATTGCAAGCACAGGATTTTT 60.181 39.130 16.17 0.00 0.00 1.94
8093 12127 3.187637 CCATTGCAAGCACAGGATTTTTG 59.812 43.478 4.94 0.00 0.00 2.44
8094 12128 1.868469 TGCAAGCACAGGATTTTTGC 58.132 45.000 0.00 0.89 43.21 3.68
8147 12181 9.967346 TTATTTCTAGGATTATGTTGAGAGTCG 57.033 33.333 0.00 0.00 0.00 4.18
8148 12182 6.392625 TTCTAGGATTATGTTGAGAGTCGG 57.607 41.667 0.00 0.00 0.00 4.79
8181 12215 4.455606 CTGGAATAATCACTCCTGGTTCC 58.544 47.826 0.00 0.00 35.40 3.62
8182 12216 4.111577 TGGAATAATCACTCCTGGTTCCT 58.888 43.478 9.13 0.00 35.75 3.36
8225 12259 3.459823 AGAGCAACTCGGCTGTCA 58.540 55.556 0.00 0.00 45.99 3.58
8238 12272 4.068599 TCGGCTGTCATTGAACACAATTA 58.931 39.130 0.00 0.00 32.76 1.40
8317 12361 0.735471 TACAGCTCAGCTCAGCGTAG 59.265 55.000 3.13 0.60 44.82 3.51
8318 12362 0.962855 ACAGCTCAGCTCAGCGTAGA 60.963 55.000 3.13 0.00 44.82 2.59
8371 12415 1.344942 CCGTCTCCAGTTCTTTCGCG 61.345 60.000 0.00 0.00 0.00 5.87
8418 12463 3.709653 ACCCCTTTGTTTCTTTCTTTCCC 59.290 43.478 0.00 0.00 0.00 3.97
8447 12492 4.009675 TCTCTTCTCTCTGTTCTGCTCTC 58.990 47.826 0.00 0.00 0.00 3.20
8486 12531 6.991938 TGTAATTTGCAAATAGCTCTTGGTT 58.008 32.000 24.35 8.61 45.94 3.67
8526 12571 3.496711 CACATATGCCCGTGCGTT 58.503 55.556 1.58 0.00 41.78 4.84
8527 12572 1.062365 CACATATGCCCGTGCGTTG 59.938 57.895 1.58 0.00 41.78 4.10
8528 12573 2.024588 CATATGCCCGTGCGTTGC 59.975 61.111 0.00 0.00 41.78 4.17
8529 12574 2.437537 ATATGCCCGTGCGTTGCA 60.438 55.556 8.11 8.11 41.78 4.08
8530 12575 2.043405 ATATGCCCGTGCGTTGCAA 61.043 52.632 0.00 0.00 41.47 4.08
8531 12576 2.265073 ATATGCCCGTGCGTTGCAAC 62.265 55.000 19.89 19.89 41.47 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 8.946085 CAGCAGACTGTAAGGATTAAAATGTTA 58.054 33.333 3.99 0.00 39.30 2.41
5 6 7.665559 TCAGCAGACTGTAAGGATTAAAATGTT 59.334 33.333 3.99 0.00 44.77 2.71
6 7 7.119846 GTCAGCAGACTGTAAGGATTAAAATGT 59.880 37.037 3.99 0.00 44.77 2.71
7 8 7.467623 GTCAGCAGACTGTAAGGATTAAAATG 58.532 38.462 3.99 0.00 44.77 2.32
8 9 7.617041 GTCAGCAGACTGTAAGGATTAAAAT 57.383 36.000 3.99 0.00 44.77 1.82
23 24 5.838531 ATAGTAAGGTACAGTCAGCAGAC 57.161 43.478 0.05 0.05 45.31 3.51
24 25 6.660800 AGTATAGTAAGGTACAGTCAGCAGA 58.339 40.000 0.00 0.00 0.00 4.26
25 26 6.945938 AGTATAGTAAGGTACAGTCAGCAG 57.054 41.667 0.00 0.00 0.00 4.24
26 27 6.405508 GCAAGTATAGTAAGGTACAGTCAGCA 60.406 42.308 0.00 0.00 0.00 4.41
27 28 5.978322 GCAAGTATAGTAAGGTACAGTCAGC 59.022 44.000 0.00 0.00 0.00 4.26
28 29 7.283580 AGAGCAAGTATAGTAAGGTACAGTCAG 59.716 40.741 0.00 0.00 0.00 3.51
29 30 7.117397 AGAGCAAGTATAGTAAGGTACAGTCA 58.883 38.462 0.00 0.00 0.00 3.41
30 31 7.571080 AGAGCAAGTATAGTAAGGTACAGTC 57.429 40.000 0.00 0.00 0.00 3.51
31 32 7.957992 AAGAGCAAGTATAGTAAGGTACAGT 57.042 36.000 0.00 0.00 0.00 3.55
32 33 8.569641 CCTAAGAGCAAGTATAGTAAGGTACAG 58.430 40.741 0.00 0.00 0.00 2.74
33 34 7.014038 GCCTAAGAGCAAGTATAGTAAGGTACA 59.986 40.741 0.00 0.00 0.00 2.90
34 35 7.231115 AGCCTAAGAGCAAGTATAGTAAGGTAC 59.769 40.741 0.00 0.00 34.23 3.34
35 36 7.296098 AGCCTAAGAGCAAGTATAGTAAGGTA 58.704 38.462 0.00 0.00 34.23 3.08
36 37 6.137559 AGCCTAAGAGCAAGTATAGTAAGGT 58.862 40.000 0.00 0.00 34.23 3.50
37 38 6.658188 AGCCTAAGAGCAAGTATAGTAAGG 57.342 41.667 0.00 0.00 34.23 2.69
38 39 8.398878 ACTAGCCTAAGAGCAAGTATAGTAAG 57.601 38.462 0.00 0.00 34.23 2.34
39 40 8.763984 AACTAGCCTAAGAGCAAGTATAGTAA 57.236 34.615 0.00 0.00 34.23 2.24
41 42 8.943594 ATAACTAGCCTAAGAGCAAGTATAGT 57.056 34.615 0.00 0.00 34.23 2.12
44 45 8.798402 CACTATAACTAGCCTAAGAGCAAGTAT 58.202 37.037 0.00 0.00 34.23 2.12
45 46 7.230913 CCACTATAACTAGCCTAAGAGCAAGTA 59.769 40.741 0.00 0.00 34.23 2.24
46 47 6.041069 CCACTATAACTAGCCTAAGAGCAAGT 59.959 42.308 0.00 0.00 34.23 3.16
47 48 6.451393 CCACTATAACTAGCCTAAGAGCAAG 58.549 44.000 0.00 0.00 34.23 4.01
48 49 5.304614 CCCACTATAACTAGCCTAAGAGCAA 59.695 44.000 0.00 0.00 34.23 3.91
49 50 4.833380 CCCACTATAACTAGCCTAAGAGCA 59.167 45.833 0.00 0.00 34.23 4.26
50 51 4.221041 CCCCACTATAACTAGCCTAAGAGC 59.779 50.000 0.00 0.00 0.00 4.09
51 52 5.642165 TCCCCACTATAACTAGCCTAAGAG 58.358 45.833 0.00 0.00 0.00 2.85
52 53 5.135705 ACTCCCCACTATAACTAGCCTAAGA 59.864 44.000 0.00 0.00 0.00 2.10
61 62 7.650660 AGTCTAAGTTACTCCCCACTATAACT 58.349 38.462 0.00 0.00 39.07 2.24
64 65 8.216423 CACTAGTCTAAGTTACTCCCCACTATA 58.784 40.741 0.00 0.00 0.00 1.31
112 113 7.676947 ACTTTGCACTATGAAGGTAGTAAGAA 58.323 34.615 0.00 0.00 33.29 2.52
114 115 8.870879 GTTACTTTGCACTATGAAGGTAGTAAG 58.129 37.037 0.00 0.00 33.29 2.34
176 177 8.680903 CAGTCCAAAGCAAAATGAGTCTATAAT 58.319 33.333 0.00 0.00 0.00 1.28
194 195 4.382291 ACTGTAACATAACGCAGTCCAAA 58.618 39.130 0.00 0.00 45.00 3.28
227 228 5.544176 TGAGGAGAGAAGTGTTTGGAGTAAT 59.456 40.000 0.00 0.00 0.00 1.89
241 242 5.899547 TGGCATAGAGTTAATGAGGAGAGAA 59.100 40.000 0.00 0.00 0.00 2.87
258 259 6.000219 AGACAGGTTTGCTTATATGGCATAG 59.000 40.000 13.39 2.28 39.54 2.23
259 260 5.940617 AGACAGGTTTGCTTATATGGCATA 58.059 37.500 10.07 10.07 39.54 3.14
276 277 3.614092 ACATAGCACATTCCAAGACAGG 58.386 45.455 0.00 0.00 0.00 4.00
277 278 5.877012 AGTAACATAGCACATTCCAAGACAG 59.123 40.000 0.00 0.00 0.00 3.51
312 313 5.069781 AGCCTAAGACTGGTCATAATGAGAC 59.930 44.000 3.51 0.00 35.29 3.36
315 316 5.282055 CAGCCTAAGACTGGTCATAATGA 57.718 43.478 3.51 0.00 0.00 2.57
328 329 2.398588 CCCACTATGACCAGCCTAAGA 58.601 52.381 0.00 0.00 0.00 2.10
398 399 9.938280 ACTACTATGTTACTTTGCACTATGAAA 57.062 29.630 0.00 0.00 0.00 2.69
420 421 9.988815 AAATGAATCCATCTATGACACTACTAC 57.011 33.333 0.00 0.00 31.40 2.73
472 473 2.268298 ACTGTAACATAGCGCTTTCCG 58.732 47.619 18.68 4.15 40.75 4.30
514 515 8.375493 ACATGTAGTTAATGAGGAAAGAGGTA 57.625 34.615 0.00 0.00 0.00 3.08
592 593 9.406113 AGTACTACTACCTTTTCTCGTCATAAT 57.594 33.333 0.00 0.00 0.00 1.28
593 594 8.798859 AGTACTACTACCTTTTCTCGTCATAA 57.201 34.615 0.00 0.00 0.00 1.90
594 595 9.319143 GTAGTACTACTACCTTTTCTCGTCATA 57.681 37.037 23.17 0.00 43.96 2.15
595 596 8.207521 GTAGTACTACTACCTTTTCTCGTCAT 57.792 38.462 23.17 0.00 43.96 3.06
596 597 7.602517 GTAGTACTACTACCTTTTCTCGTCA 57.397 40.000 23.17 0.00 43.96 4.35
613 614 9.553064 ACATGTTATTAGCGTACTAGTAGTACT 57.447 33.333 29.11 18.53 46.68 2.73
614 615 9.804547 GACATGTTATTAGCGTACTAGTAGTAC 57.195 37.037 24.79 24.79 45.71 2.73
615 616 8.703336 CGACATGTTATTAGCGTACTAGTAGTA 58.297 37.037 5.90 5.90 0.00 1.82
616 617 7.439356 TCGACATGTTATTAGCGTACTAGTAGT 59.561 37.037 8.14 8.14 0.00 2.73
617 618 7.739477 GTCGACATGTTATTAGCGTACTAGTAG 59.261 40.741 11.55 0.00 0.00 2.57
618 619 7.224557 TGTCGACATGTTATTAGCGTACTAGTA 59.775 37.037 15.76 0.00 0.00 1.82
625 626 2.850060 CGTGTCGACATGTTATTAGCGT 59.150 45.455 26.28 0.00 0.00 5.07
1019 1036 0.461339 GGGCATGACGTACCGTTCAT 60.461 55.000 0.00 0.00 41.37 2.57
1119 1151 5.105567 TCCTTGCGAATCCTACCAAAATA 57.894 39.130 0.00 0.00 0.00 1.40
1209 1253 2.681778 CCTGTCTCTCCCGTGCCT 60.682 66.667 0.00 0.00 0.00 4.75
1291 1335 2.098831 GCCTTTAGCCGTGACGACC 61.099 63.158 6.54 0.00 34.35 4.79
1298 1342 1.302511 CACCACAGCCTTTAGCCGT 60.303 57.895 0.00 0.00 45.47 5.68
1448 1498 0.323360 CCTTCTGGGGGCAAAATCGA 60.323 55.000 0.00 0.00 0.00 3.59
1544 1594 7.708998 AGTGATTTTCAAACTTAAAGGCGTTA 58.291 30.769 0.00 0.00 0.00 3.18
1553 1603 7.068103 TCTGCCTCAAAGTGATTTTCAAACTTA 59.932 33.333 0.00 0.00 33.09 2.24
1586 1648 4.323477 TCCCAGTCCCGTTTGCCG 62.323 66.667 0.00 0.00 0.00 5.69
1612 1674 1.738346 CTGATCCGACCCTCGATGCA 61.738 60.000 0.00 0.00 43.74 3.96
1627 1689 2.762327 GCAACCCATCCAAACATCTGAT 59.238 45.455 0.00 0.00 0.00 2.90
1628 1690 2.170166 GCAACCCATCCAAACATCTGA 58.830 47.619 0.00 0.00 0.00 3.27
1629 1691 1.894466 TGCAACCCATCCAAACATCTG 59.106 47.619 0.00 0.00 0.00 2.90
1655 1717 2.170607 TCCCGGAGTTCTTTGATCATCC 59.829 50.000 0.73 0.00 0.00 3.51
1721 1783 1.394917 CCTTCATTCTCAAGTTCCGCG 59.605 52.381 0.00 0.00 0.00 6.46
1862 1924 1.443802 GGACCTGCTCCTTTTCTTCG 58.556 55.000 0.00 0.00 35.89 3.79
1918 1981 8.918202 ACCATAAGAACAGAACATACAAAGAA 57.082 30.769 0.00 0.00 0.00 2.52
1924 1987 8.324163 ACAAGAACCATAAGAACAGAACATAC 57.676 34.615 0.00 0.00 0.00 2.39
1965 2028 4.534168 CATGCTCAAAGGAGATAAATGCG 58.466 43.478 0.00 0.00 44.26 4.73
2081 2155 3.118482 GGAGCCTCTGATTCTCATTGACA 60.118 47.826 0.00 0.00 0.00 3.58
2082 2156 3.465871 GGAGCCTCTGATTCTCATTGAC 58.534 50.000 0.00 0.00 0.00 3.18
2111 2185 0.747283 CCTGCATCTTGGACTCCAGC 60.747 60.000 0.00 0.00 33.81 4.85
2141 2215 3.650281 TCATCAAGCTGCCTGGATTTA 57.350 42.857 0.00 0.00 28.87 1.40
2174 2248 1.248486 TCCTTCTGTCCGAGTCACTG 58.752 55.000 0.00 0.00 0.00 3.66
2324 2398 9.562583 CTAGTTACTAGTGAACAGAAAGATGTC 57.437 37.037 11.01 0.00 29.42 3.06
2478 2581 0.248289 AATACGCTGGCCAGTAACGT 59.752 50.000 30.74 30.74 40.53 3.99
2482 2585 3.899052 ACTAAAATACGCTGGCCAGTA 57.101 42.857 32.81 20.03 0.00 2.74
2486 2589 2.745281 TGTCAACTAAAATACGCTGGCC 59.255 45.455 0.00 0.00 0.00 5.36
2492 2595 9.370126 CAGTCTTCTTTTGTCAACTAAAATACG 57.630 33.333 0.00 0.00 0.00 3.06
2520 2624 2.816087 AGCCTGTTGTTCTGTAATGCTG 59.184 45.455 0.00 0.00 0.00 4.41
2608 2733 6.372931 TGGTGGAGAATTGGGGAAAATATAG 58.627 40.000 0.00 0.00 0.00 1.31
2617 2744 2.313317 CATGATGGTGGAGAATTGGGG 58.687 52.381 0.00 0.00 0.00 4.96
2636 2765 6.127310 ACAAGCAACCCACATTTAAAGTTACA 60.127 34.615 0.00 0.00 0.00 2.41
2659 2788 4.133820 ACATTGCACACTGCTTAAGTACA 58.866 39.130 4.02 0.00 45.31 2.90
2668 2797 4.566360 ACTAAAAACAACATTGCACACTGC 59.434 37.500 0.00 0.00 45.29 4.40
2671 2800 6.310224 AGACAACTAAAAACAACATTGCACAC 59.690 34.615 0.00 0.00 0.00 3.82
2724 2853 4.776435 TGAGAATCCATGGAAGCATACA 57.224 40.909 20.67 11.50 0.00 2.29
2726 2855 5.314718 ACATGAGAATCCATGGAAGCATA 57.685 39.130 20.67 6.18 46.06 3.14
2809 2938 8.565896 AGCAGATATTGTAACAATCTTGAACA 57.434 30.769 0.00 0.00 0.00 3.18
2810 2939 8.887717 AGAGCAGATATTGTAACAATCTTGAAC 58.112 33.333 0.00 0.00 0.00 3.18
2821 2950 5.593095 ACTACCACGAGAGCAGATATTGTAA 59.407 40.000 0.00 0.00 0.00 2.41
2857 2986 3.673052 GCCGATGCAATACAACATGTGTT 60.673 43.478 0.00 0.00 38.43 3.32
2963 3097 5.922739 ATCGCATATAGAATGCAAAACGA 57.077 34.783 10.30 0.00 44.75 3.85
3015 3149 3.553511 CAGAACAACTGGTAGATCGATGC 59.446 47.826 0.54 0.00 42.39 3.91
3118 3260 3.248266 GCCAAAAGTTTGCAGCAGATAG 58.752 45.455 0.00 0.00 36.86 2.08
3120 3262 1.270465 GGCCAAAAGTTTGCAGCAGAT 60.270 47.619 0.00 0.00 36.86 2.90
3128 3272 4.844420 TTGGCGGCCAAAAGTTTG 57.156 50.000 31.03 0.00 40.92 2.93
3247 3406 7.279536 TCAGACTGTAACGGTGTAGATTACTAG 59.720 40.741 1.59 0.00 31.42 2.57
3432 3591 7.090808 TGATAGCGGCTTAGATTACTTGTATG 58.909 38.462 8.26 0.00 0.00 2.39
3450 3610 3.074504 ACATGCAGCAAAATGATAGCG 57.925 42.857 0.00 0.00 0.00 4.26
3581 3741 1.098869 TTGTGCGAGGAAAGTGCAAA 58.901 45.000 0.00 0.00 40.83 3.68
3648 4594 7.218228 TGCATCTCAAAACTACACATCAAAT 57.782 32.000 0.00 0.00 0.00 2.32
3720 4671 2.492012 AGAACTTTGAGCAGAGCACAG 58.508 47.619 0.00 0.00 30.09 3.66
3724 4675 3.056179 ACTCCTAGAACTTTGAGCAGAGC 60.056 47.826 0.00 0.00 0.00 4.09
3742 4693 4.160626 ACATCAACTTCAGGCTACTACTCC 59.839 45.833 0.00 0.00 0.00 3.85
3810 4768 0.739462 CCCGTACGCTTGAATCAGCA 60.739 55.000 10.49 0.00 40.09 4.41
3930 4889 2.613691 CCACACGCGTAGTCCTAAAAT 58.386 47.619 13.44 0.00 0.00 1.82
3939 4900 0.172578 TCAGAATCCCACACGCGTAG 59.827 55.000 13.44 9.47 0.00 3.51
4017 4983 4.202430 ACGAAACCTTAGACCAATTCCAGT 60.202 41.667 0.00 0.00 0.00 4.00
4104 5082 7.362920 CGGTGAAGATCCATCAATTTAAGGTTT 60.363 37.037 0.67 0.00 0.00 3.27
4190 7750 6.576662 TGCCGAATTACACCAAAAATAGAA 57.423 33.333 0.00 0.00 0.00 2.10
4191 7751 6.767524 ATGCCGAATTACACCAAAAATAGA 57.232 33.333 0.00 0.00 0.00 1.98
4201 7761 4.096732 AGAGCAAAATGCCGAATTACAC 57.903 40.909 0.00 0.00 46.52 2.90
4211 7771 1.266718 TGTTGTCCGAGAGCAAAATGC 59.733 47.619 0.00 0.00 45.46 3.56
4780 8348 8.192774 TGCCATCTTAAGATATTTTGCTTTCAG 58.807 33.333 17.53 1.20 32.63 3.02
4941 8519 3.613432 GCTTGTTTCTCCCTCTGCAATTG 60.613 47.826 0.00 0.00 0.00 2.32
5311 8895 2.098293 CAAACCCTGCAGGCGTATC 58.902 57.895 28.39 0.00 40.58 2.24
5439 9023 2.474410 AAGAAGGGAAGCAGTAACGG 57.526 50.000 0.00 0.00 0.00 4.44
5555 9139 3.293311 ACAGCAAGTGCATAAAAGCAG 57.707 42.857 6.00 0.00 46.69 4.24
5583 9167 2.736400 GCATCTTGCATTGTACAAGGCC 60.736 50.000 34.56 20.76 46.35 5.19
5584 9168 2.533266 GCATCTTGCATTGTACAAGGC 58.467 47.619 32.34 32.34 46.98 4.35
5598 9182 2.476199 AGCACCTCTCCTAAGCATCTT 58.524 47.619 0.00 0.00 0.00 2.40
5599 9183 2.170187 CAAGCACCTCTCCTAAGCATCT 59.830 50.000 0.00 0.00 0.00 2.90
5600 9184 2.559440 CAAGCACCTCTCCTAAGCATC 58.441 52.381 0.00 0.00 0.00 3.91
5603 9187 0.905357 TCCAAGCACCTCTCCTAAGC 59.095 55.000 0.00 0.00 0.00 3.09
5604 9188 2.461695 TCTCCAAGCACCTCTCCTAAG 58.538 52.381 0.00 0.00 0.00 2.18
5605 9189 2.623418 TCTCCAAGCACCTCTCCTAA 57.377 50.000 0.00 0.00 0.00 2.69
5606 9190 2.623418 TTCTCCAAGCACCTCTCCTA 57.377 50.000 0.00 0.00 0.00 2.94
5607 9191 1.734655 TTTCTCCAAGCACCTCTCCT 58.265 50.000 0.00 0.00 0.00 3.69
5609 9193 4.396478 GGTTTATTTCTCCAAGCACCTCTC 59.604 45.833 0.00 0.00 0.00 3.20
5610 9194 4.202567 TGGTTTATTTCTCCAAGCACCTCT 60.203 41.667 0.00 0.00 0.00 3.69
5611 9195 4.079253 TGGTTTATTTCTCCAAGCACCTC 58.921 43.478 0.00 0.00 0.00 3.85
5613 9197 3.193479 CCTGGTTTATTTCTCCAAGCACC 59.807 47.826 0.00 0.00 0.00 5.01
5614 9198 3.367395 GCCTGGTTTATTTCTCCAAGCAC 60.367 47.826 0.00 0.00 38.23 4.40
5617 9201 5.336770 GGAAAGCCTGGTTTATTTCTCCAAG 60.337 44.000 6.19 0.00 33.25 3.61
5620 9204 4.344978 AGGAAAGCCTGGTTTATTTCTCC 58.655 43.478 0.00 0.00 44.90 3.71
5621 9205 5.984695 AAGGAAAGCCTGGTTTATTTCTC 57.015 39.130 0.00 0.00 46.28 2.87
5622 9206 7.468141 CTTAAGGAAAGCCTGGTTTATTTCT 57.532 36.000 0.00 0.00 46.28 2.52
5647 9231 2.418628 CCTGTACAAATAAGCACCGGTG 59.581 50.000 30.66 30.66 0.00 4.94
5651 9235 2.423538 CTGCCCTGTACAAATAAGCACC 59.576 50.000 0.00 0.00 0.00 5.01
5652 9236 3.127030 GTCTGCCCTGTACAAATAAGCAC 59.873 47.826 0.00 0.00 0.00 4.40
5653 9237 3.343617 GTCTGCCCTGTACAAATAAGCA 58.656 45.455 0.00 1.14 0.00 3.91
5654 9238 2.351726 CGTCTGCCCTGTACAAATAAGC 59.648 50.000 0.00 0.00 0.00 3.09
5655 9239 2.351726 GCGTCTGCCCTGTACAAATAAG 59.648 50.000 0.00 0.00 33.98 1.73
5658 9242 0.324943 AGCGTCTGCCCTGTACAAAT 59.675 50.000 0.00 0.00 44.31 2.32
5659 9243 0.107831 AAGCGTCTGCCCTGTACAAA 59.892 50.000 0.00 0.00 44.31 2.83
5660 9244 0.970640 TAAGCGTCTGCCCTGTACAA 59.029 50.000 0.00 0.00 44.31 2.41
5661 9245 0.970640 TTAAGCGTCTGCCCTGTACA 59.029 50.000 0.00 0.00 44.31 2.90
5662 9246 2.311124 ATTAAGCGTCTGCCCTGTAC 57.689 50.000 0.00 0.00 44.31 2.90
5663 9247 3.181469 CCTAATTAAGCGTCTGCCCTGTA 60.181 47.826 0.00 0.00 44.31 2.74
5665 9249 2.213499 CCTAATTAAGCGTCTGCCCTG 58.787 52.381 0.00 0.00 44.31 4.45
5667 9251 0.945099 GCCTAATTAAGCGTCTGCCC 59.055 55.000 0.00 0.00 44.31 5.36
5675 9259 3.181474 ACAGGAGAGACGCCTAATTAAGC 60.181 47.826 0.00 0.00 31.11 3.09
5676 9260 4.657436 ACAGGAGAGACGCCTAATTAAG 57.343 45.455 0.00 0.00 31.11 1.85
5678 9262 5.045012 TCTACAGGAGAGACGCCTAATTA 57.955 43.478 0.00 0.00 31.11 1.40
5679 9263 3.899726 TCTACAGGAGAGACGCCTAATT 58.100 45.455 0.00 0.00 31.11 1.40
5681 9265 3.361281 TTCTACAGGAGAGACGCCTAA 57.639 47.619 0.00 0.00 34.93 2.69
5682 9266 3.361281 TTTCTACAGGAGAGACGCCTA 57.639 47.619 0.00 0.00 34.93 3.93
5684 9268 4.612943 CTTATTTCTACAGGAGAGACGCC 58.387 47.826 0.00 0.00 34.93 5.68
5685 9269 4.045783 GCTTATTTCTACAGGAGAGACGC 58.954 47.826 0.00 0.00 34.93 5.19
5688 9272 5.127845 CCAGTGCTTATTTCTACAGGAGAGA 59.872 44.000 0.00 0.00 34.93 3.10
5689 9273 5.105146 ACCAGTGCTTATTTCTACAGGAGAG 60.105 44.000 0.00 0.00 34.93 3.20
5692 9276 4.832248 CACCAGTGCTTATTTCTACAGGA 58.168 43.478 0.00 0.00 0.00 3.86
5707 9291 3.610114 CGGATTTTTCTGAAGCACCAGTG 60.610 47.826 5.46 0.00 35.71 3.66
5709 9293 2.095059 CCGGATTTTTCTGAAGCACCAG 60.095 50.000 0.00 0.00 35.55 4.00
5711 9295 1.886542 ACCGGATTTTTCTGAAGCACC 59.113 47.619 9.46 0.00 0.00 5.01
5712 9296 3.643159 AACCGGATTTTTCTGAAGCAC 57.357 42.857 9.46 0.00 0.00 4.40
5713 9297 5.975693 ATAAACCGGATTTTTCTGAAGCA 57.024 34.783 9.46 0.00 0.00 3.91
5714 9298 7.652300 AAAATAAACCGGATTTTTCTGAAGC 57.348 32.000 9.46 0.00 33.68 3.86
5722 9306 9.701098 GGTTCTTAGAAAAATAAACCGGATTTT 57.299 29.630 9.46 7.56 37.96 1.82
5723 9307 9.085645 AGGTTCTTAGAAAAATAAACCGGATTT 57.914 29.630 9.46 7.90 40.79 2.17
5725 9309 7.338703 GGAGGTTCTTAGAAAAATAAACCGGAT 59.661 37.037 9.46 0.00 40.79 4.18
5727 9311 6.127814 GGGAGGTTCTTAGAAAAATAAACCGG 60.128 42.308 0.00 0.00 40.79 5.28
5729 9313 9.524496 TTAGGGAGGTTCTTAGAAAAATAAACC 57.476 33.333 0.00 0.00 37.10 3.27
5731 9315 9.239551 GCTTAGGGAGGTTCTTAGAAAAATAAA 57.760 33.333 0.00 0.00 0.00 1.40
5733 9317 7.827729 GTGCTTAGGGAGGTTCTTAGAAAAATA 59.172 37.037 0.00 0.00 0.00 1.40
5734 9318 6.659668 GTGCTTAGGGAGGTTCTTAGAAAAAT 59.340 38.462 0.00 0.00 0.00 1.82
5736 9320 5.514310 GGTGCTTAGGGAGGTTCTTAGAAAA 60.514 44.000 0.00 0.00 0.00 2.29
5739 9323 3.105283 GGTGCTTAGGGAGGTTCTTAGA 58.895 50.000 0.00 0.00 0.00 2.10
5740 9324 3.108376 AGGTGCTTAGGGAGGTTCTTAG 58.892 50.000 0.00 0.00 0.00 2.18
5742 9326 2.046280 AGGTGCTTAGGGAGGTTCTT 57.954 50.000 0.00 0.00 0.00 2.52
5743 9327 2.753247 CTAGGTGCTTAGGGAGGTTCT 58.247 52.381 0.00 0.00 0.00 3.01
5744 9328 1.139256 GCTAGGTGCTTAGGGAGGTTC 59.861 57.143 0.00 0.00 38.95 3.62
5745 9329 1.205055 GCTAGGTGCTTAGGGAGGTT 58.795 55.000 0.00 0.00 38.95 3.50
5746 9330 0.042731 TGCTAGGTGCTTAGGGAGGT 59.957 55.000 0.00 0.00 43.37 3.85
5748 9332 2.171448 ACAATGCTAGGTGCTTAGGGAG 59.829 50.000 0.00 0.00 43.37 4.30
5749 9333 2.196595 ACAATGCTAGGTGCTTAGGGA 58.803 47.619 0.00 0.00 43.37 4.20
5750 9334 2.717639 ACAATGCTAGGTGCTTAGGG 57.282 50.000 0.00 0.00 43.37 3.53
5751 9335 4.137116 TGTACAATGCTAGGTGCTTAGG 57.863 45.455 0.00 0.00 43.37 2.69
5752 9336 4.572389 CCTTGTACAATGCTAGGTGCTTAG 59.428 45.833 9.13 0.00 43.37 2.18
5754 9338 3.347216 CCTTGTACAATGCTAGGTGCTT 58.653 45.455 9.13 0.00 43.37 3.91
5755 9339 2.941415 GCCTTGTACAATGCTAGGTGCT 60.941 50.000 23.62 0.00 43.37 4.40
5756 9340 1.401905 GCCTTGTACAATGCTAGGTGC 59.598 52.381 23.62 7.87 43.25 5.01
5757 9341 2.017049 GGCCTTGTACAATGCTAGGTG 58.983 52.381 27.69 7.79 33.37 4.00
5758 9342 1.916181 AGGCCTTGTACAATGCTAGGT 59.084 47.619 27.69 12.79 33.37 3.08
5759 9343 2.717639 AGGCCTTGTACAATGCTAGG 57.282 50.000 27.69 18.10 33.37 3.02
5761 9345 5.163248 TGCTATTAGGCCTTGTACAATGCTA 60.163 40.000 27.69 17.89 33.37 3.49
5763 9347 3.882888 TGCTATTAGGCCTTGTACAATGC 59.117 43.478 23.06 23.06 0.00 3.56
5768 9352 7.162082 AGATTACATGCTATTAGGCCTTGTAC 58.838 38.462 12.58 0.75 33.08 2.90
5769 9353 7.316393 AGATTACATGCTATTAGGCCTTGTA 57.684 36.000 12.58 9.07 32.54 2.41
5771 9355 6.712095 TCAAGATTACATGCTATTAGGCCTTG 59.288 38.462 12.58 3.04 0.00 3.61
5772 9356 6.841601 TCAAGATTACATGCTATTAGGCCTT 58.158 36.000 12.58 0.00 0.00 4.35
5773 9357 6.439636 TCAAGATTACATGCTATTAGGCCT 57.560 37.500 11.78 11.78 0.00 5.19
5774 9358 5.123027 GCTCAAGATTACATGCTATTAGGCC 59.877 44.000 0.00 0.00 0.00 5.19
5775 9359 5.702670 TGCTCAAGATTACATGCTATTAGGC 59.297 40.000 0.00 0.00 0.00 3.93
5776 9360 7.734924 TTGCTCAAGATTACATGCTATTAGG 57.265 36.000 0.00 0.00 0.00 2.69
5777 9361 8.996271 TGATTGCTCAAGATTACATGCTATTAG 58.004 33.333 0.00 0.00 0.00 1.73
5778 9362 8.907222 TGATTGCTCAAGATTACATGCTATTA 57.093 30.769 0.00 0.00 0.00 0.98
5779 9363 7.812690 TGATTGCTCAAGATTACATGCTATT 57.187 32.000 0.00 0.00 0.00 1.73
5780 9364 7.812690 TTGATTGCTCAAGATTACATGCTAT 57.187 32.000 0.00 0.00 36.46 2.97
5791 9417 4.216902 CACTGTGGAATTGATTGCTCAAGA 59.783 41.667 0.00 0.00 44.32 3.02
5807 9433 3.734902 GCAGAACAGAAAAACCACTGTGG 60.735 47.826 24.80 24.80 44.94 4.17
5815 9441 5.062183 GTCAAGGTTTGCAGAACAGAAAAAC 59.938 40.000 11.93 0.05 0.00 2.43
5816 9442 5.167845 GTCAAGGTTTGCAGAACAGAAAAA 58.832 37.500 11.93 0.00 0.00 1.94
6016 9663 6.712998 ACAATGCTTGTATTATGGCGGTATTA 59.287 34.615 0.44 0.00 43.27 0.98
6118 9801 4.599241 AGGACCAAGGATGTAATAGATGGG 59.401 45.833 0.00 0.00 0.00 4.00
6142 9825 4.396166 CCTCTCCTTTTTCGCACATAATGT 59.604 41.667 0.00 0.00 0.00 2.71
6148 9831 1.270839 CCTCCTCTCCTTTTTCGCACA 60.271 52.381 0.00 0.00 0.00 4.57
6191 9874 0.750182 CCCTTGGTTGGTGACACGTT 60.750 55.000 0.00 0.00 42.67 3.99
6193 9876 1.896660 CCCCTTGGTTGGTGACACG 60.897 63.158 0.00 0.00 42.67 4.49
6203 9886 3.527665 ACACAAGAATATAGCCCCTTGGT 59.472 43.478 0.00 0.00 40.02 3.67
6323 10014 6.318648 CAGCTTAATTGACTGGCTAATTGGTA 59.681 38.462 0.00 0.00 0.00 3.25
6526 10480 3.254657 TCAACATAAAGTTTTGCCCTCGG 59.745 43.478 0.00 0.00 38.74 4.63
6527 10481 4.497473 TCAACATAAAGTTTTGCCCTCG 57.503 40.909 0.00 0.00 38.74 4.63
6556 10510 5.225642 TGCTATACATCTCAATCAAGAGCG 58.774 41.667 0.00 0.00 35.59 5.03
6638 10593 5.703130 ACTCACCATCAGCTTTAGAGAAAAC 59.297 40.000 0.00 0.00 0.00 2.43
6706 10663 7.573096 CGGGCAAATACAGATGTATTATGTTCC 60.573 40.741 16.43 17.09 46.98 3.62
6722 10679 2.277084 CACTACTCCACGGGCAAATAC 58.723 52.381 0.00 0.00 0.00 1.89
6754 10711 7.632721 CAAGCGTTTTACTGGTAAGAAGTTTA 58.367 34.615 0.00 0.00 0.00 2.01
6957 10917 4.036616 AGGGAAAACATTGTTTGCAAATGC 59.963 37.500 19.53 3.86 38.21 3.56
7201 11189 7.312899 TGCCTAAGCTGTTAATTTAGAAAAGC 58.687 34.615 0.00 0.00 40.80 3.51
7232 11245 5.105392 ACAGCTTCAAAATTTCACACTCCAA 60.105 36.000 0.00 0.00 0.00 3.53
7269 11284 6.338146 TCCTCCATTCTAAACATGTAAGACG 58.662 40.000 9.70 5.46 0.00 4.18
7314 11331 5.106317 GGAGAATTTCCTAACGTCAATGCAA 60.106 40.000 0.00 0.00 43.16 4.08
7577 11594 3.802685 ACGCACTTCTTGTTCACTACTTC 59.197 43.478 0.00 0.00 0.00 3.01
7578 11595 3.793559 ACGCACTTCTTGTTCACTACTT 58.206 40.909 0.00 0.00 0.00 2.24
7579 11596 3.454371 ACGCACTTCTTGTTCACTACT 57.546 42.857 0.00 0.00 0.00 2.57
7611 11628 6.486657 CGAAACCCCAATATACATTCATGAGT 59.513 38.462 0.00 0.00 0.00 3.41
7623 11641 5.773176 GGATAATCCAACGAAACCCCAATAT 59.227 40.000 0.00 0.00 36.28 1.28
7624 11642 5.134661 GGATAATCCAACGAAACCCCAATA 58.865 41.667 0.00 0.00 36.28 1.90
7625 11643 3.958147 GGATAATCCAACGAAACCCCAAT 59.042 43.478 0.00 0.00 36.28 3.16
7627 11645 2.309162 TGGATAATCCAACGAAACCCCA 59.691 45.455 0.00 0.00 45.00 4.96
7628 11646 3.007473 TGGATAATCCAACGAAACCCC 57.993 47.619 0.00 0.00 45.00 4.95
7646 11678 3.402110 TGTCAATGCTACACAAGTCTGG 58.598 45.455 0.00 0.00 0.00 3.86
7650 11682 5.946298 CATTCATGTCAATGCTACACAAGT 58.054 37.500 0.00 0.00 33.47 3.16
7676 11708 3.000727 CGGTTCACAATCTCCAAGTACC 58.999 50.000 0.00 0.00 0.00 3.34
7738 11770 5.302360 ACAAACTAGTAGCCGTTTCATTCA 58.698 37.500 0.00 0.00 31.46 2.57
7739 11771 5.857822 ACAAACTAGTAGCCGTTTCATTC 57.142 39.130 0.00 0.00 31.46 2.67
7741 11773 5.302360 TCAACAAACTAGTAGCCGTTTCAT 58.698 37.500 0.00 0.00 31.46 2.57
7742 11774 4.695396 TCAACAAACTAGTAGCCGTTTCA 58.305 39.130 0.00 0.00 31.46 2.69
7743 11775 5.857822 ATCAACAAACTAGTAGCCGTTTC 57.142 39.130 0.00 0.00 31.46 2.78
7825 11859 3.445096 GCCATTCTTGTGATTGTTAGGCT 59.555 43.478 0.00 0.00 0.00 4.58
7870 11904 6.895756 AGGGAGTAGTACACAATATCTGAACA 59.104 38.462 2.52 0.00 0.00 3.18
7871 11905 7.349412 AGGGAGTAGTACACAATATCTGAAC 57.651 40.000 2.52 0.00 0.00 3.18
7872 11906 6.550108 GGAGGGAGTAGTACACAATATCTGAA 59.450 42.308 2.52 0.00 0.00 3.02
7873 11907 6.069331 GGAGGGAGTAGTACACAATATCTGA 58.931 44.000 2.52 0.00 0.00 3.27
7874 11908 5.048643 CGGAGGGAGTAGTACACAATATCTG 60.049 48.000 2.52 0.00 0.00 2.90
7875 11909 5.071370 CGGAGGGAGTAGTACACAATATCT 58.929 45.833 2.52 0.00 0.00 1.98
7888 11922 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
7889 11923 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
7890 11924 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
7891 11925 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
7892 11926 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
7893 11927 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
7894 11928 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
7895 11929 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
7896 11930 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
7897 11931 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
7898 11932 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
7899 11933 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
7900 11934 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
7901 11935 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
7903 11937 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
7904 11938 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
7905 11939 8.635765 TTGAAATGCCTAGAAAGACAAGTATT 57.364 30.769 0.00 0.00 0.00 1.89
7906 11940 8.814038 ATTGAAATGCCTAGAAAGACAAGTAT 57.186 30.769 0.00 0.00 0.00 2.12
7907 11941 9.733556 TTATTGAAATGCCTAGAAAGACAAGTA 57.266 29.630 0.00 0.00 0.00 2.24
7908 11942 8.635765 TTATTGAAATGCCTAGAAAGACAAGT 57.364 30.769 0.00 0.00 0.00 3.16
7909 11943 8.734386 ACTTATTGAAATGCCTAGAAAGACAAG 58.266 33.333 0.00 0.00 0.00 3.16
7910 11944 8.514594 CACTTATTGAAATGCCTAGAAAGACAA 58.485 33.333 0.00 0.00 0.00 3.18
7911 11945 7.882791 TCACTTATTGAAATGCCTAGAAAGACA 59.117 33.333 0.00 0.00 0.00 3.41
7912 11946 8.178313 GTCACTTATTGAAATGCCTAGAAAGAC 58.822 37.037 0.00 0.00 35.39 3.01
7913 11947 8.103305 AGTCACTTATTGAAATGCCTAGAAAGA 58.897 33.333 0.00 0.00 35.39 2.52
7914 11948 8.273780 AGTCACTTATTGAAATGCCTAGAAAG 57.726 34.615 0.00 0.00 35.39 2.62
7915 11949 9.162764 GTAGTCACTTATTGAAATGCCTAGAAA 57.837 33.333 0.00 0.00 35.39 2.52
7916 11950 8.318412 TGTAGTCACTTATTGAAATGCCTAGAA 58.682 33.333 0.00 0.00 35.39 2.10
7917 11951 7.847096 TGTAGTCACTTATTGAAATGCCTAGA 58.153 34.615 0.00 0.00 35.39 2.43
7918 11952 8.668510 ATGTAGTCACTTATTGAAATGCCTAG 57.331 34.615 0.00 0.00 35.39 3.02
7919 11953 9.542462 GTATGTAGTCACTTATTGAAATGCCTA 57.458 33.333 0.00 0.00 35.39 3.93
7920 11954 7.224753 CGTATGTAGTCACTTATTGAAATGCCT 59.775 37.037 0.00 0.00 35.39 4.75
7921 11955 7.345192 CGTATGTAGTCACTTATTGAAATGCC 58.655 38.462 0.00 0.00 35.39 4.40
7922 11956 7.223971 TCCGTATGTAGTCACTTATTGAAATGC 59.776 37.037 0.00 0.00 35.39 3.56
7923 11957 8.642908 TCCGTATGTAGTCACTTATTGAAATG 57.357 34.615 0.00 0.00 35.39 2.32
7924 11958 8.475639 ACTCCGTATGTAGTCACTTATTGAAAT 58.524 33.333 0.00 0.00 35.39 2.17
7925 11959 7.833786 ACTCCGTATGTAGTCACTTATTGAAA 58.166 34.615 0.00 0.00 35.39 2.69
7926 11960 7.400599 ACTCCGTATGTAGTCACTTATTGAA 57.599 36.000 0.00 0.00 35.39 2.69
7927 11961 8.510243 TTACTCCGTATGTAGTCACTTATTGA 57.490 34.615 0.00 0.00 0.00 2.57
7928 11962 9.577110 TTTTACTCCGTATGTAGTCACTTATTG 57.423 33.333 0.00 0.00 0.00 1.90
7932 11966 9.798994 CTTATTTTACTCCGTATGTAGTCACTT 57.201 33.333 0.00 0.00 0.00 3.16
7933 11967 8.964772 ACTTATTTTACTCCGTATGTAGTCACT 58.035 33.333 0.00 0.00 0.00 3.41
7934 11968 9.017669 CACTTATTTTACTCCGTATGTAGTCAC 57.982 37.037 0.00 0.00 0.00 3.67
7935 11969 8.959548 TCACTTATTTTACTCCGTATGTAGTCA 58.040 33.333 0.00 0.00 0.00 3.41
7936 11970 9.793252 TTCACTTATTTTACTCCGTATGTAGTC 57.207 33.333 0.00 0.00 0.00 2.59
7943 11977 9.793252 GTGTAGATTCACTTATTTTACTCCGTA 57.207 33.333 0.00 0.00 35.68 4.02
7944 11978 8.529476 AGTGTAGATTCACTTATTTTACTCCGT 58.471 33.333 0.00 0.00 44.92 4.69
7945 11979 8.928270 AGTGTAGATTCACTTATTTTACTCCG 57.072 34.615 0.00 0.00 44.92 4.63
7986 12020 8.585018 TCAAATGACTATCACATACGGATGTAT 58.415 33.333 14.23 10.02 44.82 2.29
7987 12021 7.947282 TCAAATGACTATCACATACGGATGTA 58.053 34.615 14.23 2.61 44.82 2.29
7989 12023 7.713764 TTCAAATGACTATCACATACGGATG 57.286 36.000 5.94 5.94 39.16 3.51
7990 12024 8.777413 CATTTCAAATGACTATCACATACGGAT 58.223 33.333 3.82 0.00 0.00 4.18
7991 12025 7.254761 GCATTTCAAATGACTATCACATACGGA 60.255 37.037 14.65 0.00 0.00 4.69
7992 12026 6.852853 GCATTTCAAATGACTATCACATACGG 59.147 38.462 14.65 0.00 0.00 4.02
7993 12027 6.852853 GGCATTTCAAATGACTATCACATACG 59.147 38.462 14.65 0.00 0.00 3.06
7994 12028 7.934457 AGGCATTTCAAATGACTATCACATAC 58.066 34.615 17.52 0.00 35.20 2.39
7995 12029 9.276590 CTAGGCATTTCAAATGACTATCACATA 57.723 33.333 23.50 4.36 38.80 2.29
7996 12030 7.994911 TCTAGGCATTTCAAATGACTATCACAT 59.005 33.333 23.50 1.77 38.80 3.21
7997 12031 7.337938 TCTAGGCATTTCAAATGACTATCACA 58.662 34.615 23.50 5.75 38.80 3.58
7998 12032 7.792374 TCTAGGCATTTCAAATGACTATCAC 57.208 36.000 23.50 0.15 38.80 3.06
7999 12033 8.806429 TTTCTAGGCATTTCAAATGACTATCA 57.194 30.769 23.50 12.23 38.80 2.15
8000 12034 9.113838 TCTTTCTAGGCATTTCAAATGACTATC 57.886 33.333 23.50 1.52 38.80 2.08
8001 12035 8.897752 GTCTTTCTAGGCATTTCAAATGACTAT 58.102 33.333 23.50 4.64 38.80 2.12
8002 12036 7.882791 TGTCTTTCTAGGCATTTCAAATGACTA 59.117 33.333 22.19 22.19 38.54 2.59
8003 12037 6.716628 TGTCTTTCTAGGCATTTCAAATGACT 59.283 34.615 22.35 22.35 41.04 3.41
8004 12038 6.913170 TGTCTTTCTAGGCATTTCAAATGAC 58.087 36.000 14.65 11.48 29.10 3.06
8005 12039 7.231317 ACTTGTCTTTCTAGGCATTTCAAATGA 59.769 33.333 14.65 0.00 35.56 2.57
8006 12040 7.373493 ACTTGTCTTTCTAGGCATTTCAAATG 58.627 34.615 5.68 5.68 35.56 2.32
8007 12041 7.530426 ACTTGTCTTTCTAGGCATTTCAAAT 57.470 32.000 0.00 0.00 35.56 2.32
8008 12042 6.959639 ACTTGTCTTTCTAGGCATTTCAAA 57.040 33.333 0.00 0.00 35.56 2.69
8009 12043 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
8010 12044 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
8012 12046 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
8013 12047 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
8014 12048 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
8015 12049 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
8016 12050 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
8017 12051 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
8018 12052 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
8019 12053 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
8020 12054 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
8021 12055 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
8022 12056 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
8023 12057 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
8024 12058 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
8025 12059 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
8026 12060 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
8027 12061 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
8028 12062 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
8029 12063 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
8030 12064 4.892345 ACTACTCCCTCCGTTCCTAAATAC 59.108 45.833 0.00 0.00 0.00 1.89
8031 12065 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
8032 12066 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
8033 12067 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
8034 12068 3.463048 AACTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
8035 12069 3.525199 ACTAACTACTCCCTCCGTTCCTA 59.475 47.826 0.00 0.00 0.00 2.94
8036 12070 2.311243 ACTAACTACTCCCTCCGTTCCT 59.689 50.000 0.00 0.00 0.00 3.36
8037 12071 2.732763 ACTAACTACTCCCTCCGTTCC 58.267 52.381 0.00 0.00 0.00 3.62
8038 12072 6.293900 GCTATAACTAACTACTCCCTCCGTTC 60.294 46.154 0.00 0.00 0.00 3.95
8039 12073 5.534278 GCTATAACTAACTACTCCCTCCGTT 59.466 44.000 0.00 0.00 0.00 4.44
8040 12074 5.069318 GCTATAACTAACTACTCCCTCCGT 58.931 45.833 0.00 0.00 0.00 4.69
8041 12075 5.068636 TGCTATAACTAACTACTCCCTCCG 58.931 45.833 0.00 0.00 0.00 4.63
8042 12076 5.477637 CCTGCTATAACTAACTACTCCCTCC 59.522 48.000 0.00 0.00 0.00 4.30
8043 12077 6.305411 TCCTGCTATAACTAACTACTCCCTC 58.695 44.000 0.00 0.00 0.00 4.30
8044 12078 6.277064 TCCTGCTATAACTAACTACTCCCT 57.723 41.667 0.00 0.00 0.00 4.20
8045 12079 6.973460 TTCCTGCTATAACTAACTACTCCC 57.027 41.667 0.00 0.00 0.00 4.30
8046 12080 7.710044 GGTTTTCCTGCTATAACTAACTACTCC 59.290 40.741 0.00 0.00 36.94 3.85
8047 12081 8.255905 TGGTTTTCCTGCTATAACTAACTACTC 58.744 37.037 0.00 0.00 41.38 2.59
8048 12082 8.142485 TGGTTTTCCTGCTATAACTAACTACT 57.858 34.615 0.00 0.00 41.38 2.57
8049 12083 8.959705 ATGGTTTTCCTGCTATAACTAACTAC 57.040 34.615 0.00 0.00 41.38 2.73
8050 12084 9.391006 CAATGGTTTTCCTGCTATAACTAACTA 57.609 33.333 0.00 0.00 41.38 2.24
8051 12085 7.148069 GCAATGGTTTTCCTGCTATAACTAACT 60.148 37.037 0.00 0.00 37.91 2.24
8052 12086 6.972901 GCAATGGTTTTCCTGCTATAACTAAC 59.027 38.462 0.00 0.00 37.91 2.34
8053 12087 6.661377 TGCAATGGTTTTCCTGCTATAACTAA 59.339 34.615 0.00 0.00 40.45 2.24
8085 12119 5.050159 GGACAAACACAAGATGCAAAAATCC 60.050 40.000 0.00 0.00 0.00 3.01
8092 12126 1.955778 CTGGGACAAACACAAGATGCA 59.044 47.619 0.00 0.00 38.70 3.96
8093 12127 1.270550 CCTGGGACAAACACAAGATGC 59.729 52.381 0.00 0.00 38.70 3.91
8094 12128 1.270550 GCCTGGGACAAACACAAGATG 59.729 52.381 0.00 0.00 38.70 2.90
8147 12181 7.945134 AGTGATTATTCCAGCAACAAATATCC 58.055 34.615 0.00 0.00 0.00 2.59
8148 12182 8.078596 GGAGTGATTATTCCAGCAACAAATATC 58.921 37.037 0.00 0.00 33.16 1.63
8192 12226 2.288666 GCTCTCAACTGTGACAACCAA 58.711 47.619 0.00 0.00 0.00 3.67
8216 12250 1.960417 TTGTGTTCAATGACAGCCGA 58.040 45.000 0.00 0.00 0.00 5.54
8217 12251 2.995466 ATTGTGTTCAATGACAGCCG 57.005 45.000 0.00 0.00 41.95 5.52
8218 12252 6.158598 ACAATAATTGTGTTCAATGACAGCC 58.841 36.000 0.00 0.00 43.48 4.85
8238 12272 5.486735 TTGGATGCATTCTTTTCCACAAT 57.513 34.783 6.53 0.00 37.97 2.71
8317 12361 1.967319 TCTTGGCAGGTGAACACTTC 58.033 50.000 4.96 0.00 0.00 3.01
8318 12362 2.158623 TGATCTTGGCAGGTGAACACTT 60.159 45.455 4.96 0.00 0.00 3.16
8418 12463 1.202114 ACAGAGAGAAGAGAAGCTGCG 59.798 52.381 0.00 0.00 0.00 5.18
8509 12554 1.062365 CAACGCACGGGCATATGTG 59.938 57.895 11.77 0.00 41.24 3.21
8510 12555 2.760159 GCAACGCACGGGCATATGT 61.760 57.895 11.77 0.00 41.24 2.29
8511 12556 2.024588 GCAACGCACGGGCATATG 59.975 61.111 11.77 6.17 41.24 1.78
8512 12557 2.043405 TTGCAACGCACGGGCATAT 61.043 52.632 11.77 0.00 38.71 1.78
8513 12558 2.669910 TTGCAACGCACGGGCATA 60.670 55.556 11.77 0.00 38.71 3.14
8514 12559 4.341502 GTTGCAACGCACGGGCAT 62.342 61.111 14.90 0.00 38.71 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.