Multiple sequence alignment - TraesCS3D01G231100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G231100 chr3D 100.000 3221 0 0 1 3221 315757689 315754469 0.000000e+00 5949.0
1 TraesCS3D01G231100 chr3D 89.640 222 19 4 563 782 341149996 341149777 2.450000e-71 279.0
2 TraesCS3D01G231100 chr3D 88.261 230 18 7 555 782 215720494 215720716 1.910000e-67 267.0
3 TraesCS3D01G231100 chr3D 85.106 94 12 2 1 93 609933615 609933523 9.510000e-16 95.3
4 TraesCS3D01G231100 chr3B 95.588 2244 50 21 777 3002 404622534 404624746 0.000000e+00 3550.0
5 TraesCS3D01G231100 chr3B 86.190 420 40 14 91 503 404622029 404622437 3.810000e-119 438.0
6 TraesCS3D01G231100 chr3A 95.062 2248 77 19 777 3009 414202275 414200047 0.000000e+00 3506.0
7 TraesCS3D01G231100 chr3A 88.987 227 15 6 563 782 312675761 312675984 4.090000e-69 272.0
8 TraesCS3D01G231100 chr3A 81.053 95 15 3 1 93 700933187 700933094 4.460000e-09 73.1
9 TraesCS3D01G231100 chr5D 93.717 191 12 0 3031 3221 530926535 530926725 1.460000e-73 287.0
10 TraesCS3D01G231100 chr2D 89.565 230 15 7 555 782 262367386 262367608 1.890000e-72 283.0
11 TraesCS3D01G231100 chr2D 90.278 216 18 3 563 777 214694225 214694438 2.450000e-71 279.0
12 TraesCS3D01G231100 chr2D 89.640 222 15 6 562 777 140368695 140368914 3.170000e-70 276.0
13 TraesCS3D01G231100 chr2D 100.000 33 0 0 1 33 73127237 73127269 9.650000e-06 62.1
14 TraesCS3D01G231100 chr7D 90.090 222 14 7 563 782 498124334 498124549 6.800000e-72 281.0
15 TraesCS3D01G231100 chr7D 88.732 71 7 1 152 222 564574904 564574835 5.730000e-13 86.1
16 TraesCS3D01G231100 chr1D 89.640 222 15 6 563 782 448521166 448520951 3.170000e-70 276.0
17 TraesCS3D01G231100 chr4D 88.261 230 17 8 555 782 170487199 170486978 1.910000e-67 267.0
18 TraesCS3D01G231100 chr2A 83.077 195 23 7 3035 3221 776523510 776523702 5.530000e-38 169.0
19 TraesCS3D01G231100 chr2A 83.246 191 21 8 3035 3221 641726278 641726461 7.150000e-37 165.0
20 TraesCS3D01G231100 chr2A 92.784 97 6 1 3125 3221 5228972 5228877 4.330000e-29 139.0
21 TraesCS3D01G231100 chr2A 92.784 97 6 1 3125 3221 5241905 5241810 4.330000e-29 139.0
22 TraesCS3D01G231100 chr2A 92.784 97 6 1 3125 3221 236661734 236661829 4.330000e-29 139.0
23 TraesCS3D01G231100 chr2A 88.732 71 7 1 152 222 745305119 745305050 5.730000e-13 86.1
24 TraesCS3D01G231100 chr7A 82.564 195 24 7 3035 3221 232001126 232001318 2.570000e-36 163.0
25 TraesCS3D01G231100 chr7A 83.908 174 17 6 3049 3221 675672140 675672303 4.300000e-34 156.0
26 TraesCS3D01G231100 chr6A 80.612 196 26 7 3035 3221 447077423 447077615 1.200000e-29 141.0
27 TraesCS3D01G231100 chr4B 86.170 94 11 2 1 93 601283570 601283478 2.040000e-17 100.0
28 TraesCS3D01G231100 chr4B 86.170 94 11 2 1 93 601305691 601305599 2.040000e-17 100.0
29 TraesCS3D01G231100 chr4A 86.170 94 11 2 1 93 683800172 683800080 2.040000e-17 100.0
30 TraesCS3D01G231100 chr4A 90.741 54 5 0 167 220 744005804 744005751 4.460000e-09 73.1
31 TraesCS3D01G231100 chr6B 88.732 71 7 1 152 222 53596830 53596899 5.730000e-13 86.1
32 TraesCS3D01G231100 chr6D 89.552 67 6 1 148 214 27717750 27717815 2.060000e-12 84.2
33 TraesCS3D01G231100 chr2B 90.000 60 6 0 167 226 21662173 21662114 9.580000e-11 78.7
34 TraesCS3D01G231100 chr2B 100.000 33 0 0 1 33 110573214 110573246 9.650000e-06 62.1
35 TraesCS3D01G231100 chr5A 90.909 55 5 0 167 221 644351428 644351374 1.240000e-09 75.0
36 TraesCS3D01G231100 chr1B 93.750 48 3 0 167 214 175413402 175413449 4.460000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G231100 chr3D 315754469 315757689 3220 True 5949 5949 100.000 1 3221 1 chr3D.!!$R1 3220
1 TraesCS3D01G231100 chr3B 404622029 404624746 2717 False 1994 3550 90.889 91 3002 2 chr3B.!!$F1 2911
2 TraesCS3D01G231100 chr3A 414200047 414202275 2228 True 3506 3506 95.062 777 3009 1 chr3A.!!$R1 2232

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
760 805 0.025513 CGCGCATGCTCTCTGTAAAC 59.974 55.0 17.13 0.0 39.65 2.01 F
1792 1855 0.250338 GGGAACACTGAGGCGAAGTT 60.250 55.0 0.00 0.0 0.00 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1922 1985 0.898320 TGAGAGCCACTACCAGCTTC 59.102 55.000 0.0 0.0 40.11 3.86 R
2737 2808 1.680249 GGGAATGCTCCACTCCTCAAC 60.680 57.143 0.0 0.0 44.51 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.660501 CATGGATTCATGCCTTGATGG 57.339 47.619 0.00 0.00 43.44 3.51
24 25 2.832643 TGGATTCATGCCTTGATGGT 57.167 45.000 0.00 0.00 38.35 3.55
25 26 3.104519 TGGATTCATGCCTTGATGGTT 57.895 42.857 0.00 0.00 38.35 3.67
26 27 4.248174 TGGATTCATGCCTTGATGGTTA 57.752 40.909 0.00 0.00 38.35 2.85
27 28 4.806892 TGGATTCATGCCTTGATGGTTAT 58.193 39.130 0.00 0.00 38.35 1.89
28 29 4.585581 TGGATTCATGCCTTGATGGTTATG 59.414 41.667 0.00 0.00 38.35 1.90
29 30 4.021719 GGATTCATGCCTTGATGGTTATGG 60.022 45.833 0.00 0.00 38.35 2.74
30 31 3.949586 TCATGCCTTGATGGTTATGGA 57.050 42.857 0.00 0.00 38.35 3.41
31 32 3.554934 TCATGCCTTGATGGTTATGGAC 58.445 45.455 0.00 0.00 38.35 4.02
32 33 2.036958 TGCCTTGATGGTTATGGACG 57.963 50.000 0.00 0.00 38.35 4.79
33 34 1.557371 TGCCTTGATGGTTATGGACGA 59.443 47.619 0.00 0.00 38.35 4.20
34 35 2.213499 GCCTTGATGGTTATGGACGAG 58.787 52.381 0.00 0.00 38.35 4.18
35 36 2.420129 GCCTTGATGGTTATGGACGAGT 60.420 50.000 0.00 0.00 38.35 4.18
36 37 3.873910 CCTTGATGGTTATGGACGAGTT 58.126 45.455 0.00 0.00 0.00 3.01
37 38 4.261801 CCTTGATGGTTATGGACGAGTTT 58.738 43.478 0.00 0.00 0.00 2.66
38 39 5.424757 CCTTGATGGTTATGGACGAGTTTA 58.575 41.667 0.00 0.00 0.00 2.01
39 40 5.523916 CCTTGATGGTTATGGACGAGTTTAG 59.476 44.000 0.00 0.00 0.00 1.85
40 41 4.439057 TGATGGTTATGGACGAGTTTAGC 58.561 43.478 0.00 0.00 0.00 3.09
41 42 3.965379 TGGTTATGGACGAGTTTAGCA 57.035 42.857 0.00 0.00 0.00 3.49
42 43 4.481368 TGGTTATGGACGAGTTTAGCAT 57.519 40.909 0.00 0.00 0.00 3.79
43 44 4.188462 TGGTTATGGACGAGTTTAGCATG 58.812 43.478 0.00 0.00 0.00 4.06
44 45 4.189231 GGTTATGGACGAGTTTAGCATGT 58.811 43.478 0.00 0.00 0.00 3.21
45 46 4.634443 GGTTATGGACGAGTTTAGCATGTT 59.366 41.667 0.00 0.00 0.00 2.71
46 47 5.123344 GGTTATGGACGAGTTTAGCATGTTT 59.877 40.000 0.00 0.00 0.00 2.83
47 48 6.314400 GGTTATGGACGAGTTTAGCATGTTTA 59.686 38.462 0.00 0.00 0.00 2.01
48 49 7.012044 GGTTATGGACGAGTTTAGCATGTTTAT 59.988 37.037 0.00 0.00 0.00 1.40
49 50 9.037737 GTTATGGACGAGTTTAGCATGTTTATA 57.962 33.333 0.00 0.00 0.00 0.98
50 51 9.602568 TTATGGACGAGTTTAGCATGTTTATAA 57.397 29.630 0.00 0.00 0.00 0.98
51 52 7.534085 TGGACGAGTTTAGCATGTTTATAAG 57.466 36.000 0.00 0.00 0.00 1.73
52 53 7.324935 TGGACGAGTTTAGCATGTTTATAAGA 58.675 34.615 0.00 0.00 0.00 2.10
53 54 7.491372 TGGACGAGTTTAGCATGTTTATAAGAG 59.509 37.037 0.00 0.00 0.00 2.85
54 55 7.042658 GGACGAGTTTAGCATGTTTATAAGAGG 60.043 40.741 0.00 0.00 0.00 3.69
55 56 7.553334 ACGAGTTTAGCATGTTTATAAGAGGA 58.447 34.615 0.00 0.00 0.00 3.71
56 57 8.038944 ACGAGTTTAGCATGTTTATAAGAGGAA 58.961 33.333 0.00 0.00 0.00 3.36
57 58 8.879759 CGAGTTTAGCATGTTTATAAGAGGAAA 58.120 33.333 0.00 0.00 0.00 3.13
74 75 8.884124 AAGAGGAAAAATGATACATTCCAAGA 57.116 30.769 6.21 0.00 43.03 3.02
75 76 8.884124 AGAGGAAAAATGATACATTCCAAGAA 57.116 30.769 6.21 0.00 43.03 2.52
76 77 9.312904 AGAGGAAAAATGATACATTCCAAGAAA 57.687 29.630 6.21 0.00 43.03 2.52
77 78 9.927668 GAGGAAAAATGATACATTCCAAGAAAA 57.072 29.630 6.21 0.00 43.03 2.29
84 85 9.439500 AATGATACATTCCAAGAAAAATGGTTG 57.561 29.630 0.00 0.00 39.09 3.77
85 86 7.961351 TGATACATTCCAAGAAAAATGGTTGT 58.039 30.769 0.00 0.00 39.09 3.32
86 87 7.871973 TGATACATTCCAAGAAAAATGGTTGTG 59.128 33.333 11.44 4.59 39.09 3.33
87 88 4.815846 ACATTCCAAGAAAAATGGTTGTGC 59.184 37.500 0.00 0.00 39.09 4.57
88 89 4.751767 TTCCAAGAAAAATGGTTGTGCT 57.248 36.364 0.00 0.00 39.09 4.40
89 90 4.320608 TCCAAGAAAAATGGTTGTGCTC 57.679 40.909 0.00 0.00 39.09 4.26
92 93 3.375782 AGAAAAATGGTTGTGCTCAGC 57.624 42.857 0.00 0.00 0.00 4.26
103 104 3.319137 TGTGCTCAGCTGTAAGGTTAG 57.681 47.619 14.67 2.55 46.63 2.34
107 108 2.735762 GCTCAGCTGTAAGGTTAGACCG 60.736 54.545 14.67 0.00 46.63 4.79
109 110 2.230508 TCAGCTGTAAGGTTAGACCGTG 59.769 50.000 14.67 0.00 46.63 4.94
117 118 0.179702 GGTTAGACCGTGGGGGAATC 59.820 60.000 0.00 0.00 39.97 2.52
137 138 1.577328 CGAGCGATTGGTTGGTGCTT 61.577 55.000 0.00 0.00 35.73 3.91
143 144 3.613910 GCGATTGGTTGGTGCTTACAAAT 60.614 43.478 0.00 0.00 0.00 2.32
145 146 4.385447 CGATTGGTTGGTGCTTACAAATTG 59.615 41.667 0.00 0.00 0.00 2.32
154 155 5.301551 TGGTGCTTACAAATTGAACACTGAT 59.698 36.000 0.00 0.00 0.00 2.90
194 195 7.297936 TGTTGAGAGAATTGTTAGTAGTGGA 57.702 36.000 0.00 0.00 0.00 4.02
198 199 9.475620 TTGAGAGAATTGTTAGTAGTGGAGATA 57.524 33.333 0.00 0.00 0.00 1.98
215 216 9.077885 AGTGGAGATAAACTTCTTAAAAATGCA 57.922 29.630 0.00 0.00 0.00 3.96
227 228 7.615582 TCTTAAAAATGCAGGATGAGTACTG 57.384 36.000 0.00 0.00 39.69 2.74
228 229 7.394016 TCTTAAAAATGCAGGATGAGTACTGA 58.606 34.615 0.00 0.00 38.71 3.41
230 231 8.579850 TTAAAAATGCAGGATGAGTACTGAAT 57.420 30.769 0.00 0.00 35.93 2.57
231 232 6.446781 AAAATGCAGGATGAGTACTGAATG 57.553 37.500 0.00 0.00 32.94 2.67
232 233 5.363562 AATGCAGGATGAGTACTGAATGA 57.636 39.130 0.00 0.00 32.94 2.57
240 241 5.812642 GGATGAGTACTGAATGATTGTTCGT 59.187 40.000 0.00 0.00 0.00 3.85
243 244 6.455647 TGAGTACTGAATGATTGTTCGTCTT 58.544 36.000 0.00 0.00 0.00 3.01
248 249 7.962964 ACTGAATGATTGTTCGTCTTAAGAA 57.037 32.000 6.78 0.00 0.00 2.52
362 364 9.719355 AAAAGTTCATATCATTACCAAAAACCC 57.281 29.630 0.00 0.00 0.00 4.11
386 390 9.570488 CCCGAAACCATAAAAATCGTAAAATTA 57.430 29.630 0.00 0.00 0.00 1.40
411 415 3.980775 CGGTTTGGTTTTAGAATGCACAG 59.019 43.478 0.00 0.00 0.00 3.66
415 419 5.437289 TTGGTTTTAGAATGCACAGAGTG 57.563 39.130 0.00 0.00 36.51 3.51
448 452 1.478105 GTTGCAACCCAAGGATCCATC 59.522 52.381 19.15 0.00 33.21 3.51
462 466 5.587861 AGGATCCATCAGCTAGATACATGA 58.412 41.667 15.82 0.00 34.43 3.07
485 489 5.463499 AAGAAATTTTGTTCCGTTGCAAC 57.537 34.783 19.89 19.89 0.00 4.17
486 490 3.868661 AGAAATTTTGTTCCGTTGCAACC 59.131 39.130 23.42 10.11 0.00 3.77
489 493 1.115467 TTTGTTCCGTTGCAACCCAT 58.885 45.000 23.42 0.00 0.00 4.00
490 494 0.387202 TTGTTCCGTTGCAACCCATG 59.613 50.000 23.42 9.46 0.00 3.66
494 539 0.621082 TCCGTTGCAACCCATGGATA 59.379 50.000 23.42 1.62 0.00 2.59
498 543 3.826157 CCGTTGCAACCCATGGATATATT 59.174 43.478 23.42 0.00 0.00 1.28
522 567 9.944376 ATTTGCTAGTAAGTCTTAAATGTGAGA 57.056 29.630 0.00 0.00 0.00 3.27
524 569 9.772973 TTGCTAGTAAGTCTTAAATGTGAGAAA 57.227 29.630 0.00 0.00 0.00 2.52
551 596 7.466746 TTTTCAGGGAATTAAATGTGAGAGG 57.533 36.000 0.00 0.00 0.00 3.69
552 597 5.779241 TCAGGGAATTAAATGTGAGAGGT 57.221 39.130 0.00 0.00 0.00 3.85
553 598 6.139679 TCAGGGAATTAAATGTGAGAGGTT 57.860 37.500 0.00 0.00 0.00 3.50
554 599 7.265599 TCAGGGAATTAAATGTGAGAGGTTA 57.734 36.000 0.00 0.00 0.00 2.85
555 600 7.695055 TCAGGGAATTAAATGTGAGAGGTTAA 58.305 34.615 0.00 0.00 0.00 2.01
556 601 8.336235 TCAGGGAATTAAATGTGAGAGGTTAAT 58.664 33.333 0.00 0.00 0.00 1.40
557 602 9.627123 CAGGGAATTAAATGTGAGAGGTTAATA 57.373 33.333 0.00 0.00 0.00 0.98
569 614 9.670442 TGTGAGAGGTTAATATAAATACTCCCT 57.330 33.333 0.00 0.00 0.00 4.20
571 616 9.322769 TGAGAGGTTAATATAAATACTCCCTCC 57.677 37.037 0.00 0.00 37.30 4.30
572 617 9.322769 GAGAGGTTAATATAAATACTCCCTCCA 57.677 37.037 0.00 0.00 37.30 3.86
573 618 9.860393 AGAGGTTAATATAAATACTCCCTCCAT 57.140 33.333 0.00 0.00 37.30 3.41
575 620 9.860393 AGGTTAATATAAATACTCCCTCCATCT 57.140 33.333 0.00 0.00 0.00 2.90
577 622 9.804758 GTTAATATAAATACTCCCTCCATCTCG 57.195 37.037 0.00 0.00 0.00 4.04
578 623 7.425224 AATATAAATACTCCCTCCATCTCGG 57.575 40.000 0.00 0.00 0.00 4.63
579 624 2.777459 AATACTCCCTCCATCTCGGT 57.223 50.000 0.00 0.00 35.57 4.69
580 625 2.777459 ATACTCCCTCCATCTCGGTT 57.223 50.000 0.00 0.00 35.57 4.44
581 626 2.544844 TACTCCCTCCATCTCGGTTT 57.455 50.000 0.00 0.00 35.57 3.27
582 627 2.544844 ACTCCCTCCATCTCGGTTTA 57.455 50.000 0.00 0.00 35.57 2.01
583 628 3.047695 ACTCCCTCCATCTCGGTTTAT 57.952 47.619 0.00 0.00 35.57 1.40
584 629 4.194678 ACTCCCTCCATCTCGGTTTATA 57.805 45.455 0.00 0.00 35.57 0.98
585 630 4.153411 ACTCCCTCCATCTCGGTTTATAG 58.847 47.826 0.00 0.00 35.57 1.31
586 631 3.507411 TCCCTCCATCTCGGTTTATAGG 58.493 50.000 0.00 0.00 35.57 2.57
587 632 2.567615 CCCTCCATCTCGGTTTATAGGG 59.432 54.545 0.00 0.00 37.53 3.53
588 633 2.028020 CCTCCATCTCGGTTTATAGGGC 60.028 54.545 0.00 0.00 35.57 5.19
589 634 1.616865 TCCATCTCGGTTTATAGGGCG 59.383 52.381 0.00 0.00 35.57 6.13
590 635 1.343465 CCATCTCGGTTTATAGGGCGT 59.657 52.381 0.00 0.00 0.00 5.68
591 636 2.404215 CATCTCGGTTTATAGGGCGTG 58.596 52.381 0.00 0.00 0.00 5.34
592 637 0.103572 TCTCGGTTTATAGGGCGTGC 59.896 55.000 0.00 0.00 0.00 5.34
593 638 1.213094 CTCGGTTTATAGGGCGTGCG 61.213 60.000 0.00 0.00 0.00 5.34
594 639 2.877974 CGGTTTATAGGGCGTGCGC 61.878 63.158 8.17 8.17 41.06 6.09
595 640 2.624264 GTTTATAGGGCGTGCGCG 59.376 61.111 16.86 16.86 43.06 6.86
596 641 2.169146 GTTTATAGGGCGTGCGCGT 61.169 57.895 22.18 3.77 43.06 6.01
597 642 0.871163 GTTTATAGGGCGTGCGCGTA 60.871 55.000 22.18 0.00 43.06 4.42
598 643 0.595567 TTTATAGGGCGTGCGCGTAG 60.596 55.000 22.18 0.00 43.06 3.51
599 644 1.727511 TTATAGGGCGTGCGCGTAGT 61.728 55.000 22.18 8.21 43.06 2.73
600 645 1.727511 TATAGGGCGTGCGCGTAGTT 61.728 55.000 22.18 7.37 43.06 2.24
601 646 2.948840 ATAGGGCGTGCGCGTAGTTC 62.949 60.000 22.18 3.40 43.06 3.01
603 648 2.202518 GGCGTGCGCGTAGTTCTA 60.203 61.111 22.18 0.00 43.06 2.10
604 649 2.222217 GGCGTGCGCGTAGTTCTAG 61.222 63.158 22.18 0.00 43.06 2.43
605 650 2.222217 GCGTGCGCGTAGTTCTAGG 61.222 63.158 22.18 0.00 40.81 3.02
606 651 1.136147 CGTGCGCGTAGTTCTAGGT 59.864 57.895 12.43 0.00 0.00 3.08
607 652 0.860618 CGTGCGCGTAGTTCTAGGTC 60.861 60.000 12.43 0.00 0.00 3.85
608 653 0.169672 GTGCGCGTAGTTCTAGGTCA 59.830 55.000 8.43 0.00 0.00 4.02
609 654 1.100510 TGCGCGTAGTTCTAGGTCAT 58.899 50.000 8.43 0.00 0.00 3.06
610 655 1.065102 TGCGCGTAGTTCTAGGTCATC 59.935 52.381 8.43 0.00 0.00 2.92
611 656 1.599916 GCGCGTAGTTCTAGGTCATCC 60.600 57.143 8.43 0.00 0.00 3.51
612 657 1.674441 CGCGTAGTTCTAGGTCATCCA 59.326 52.381 0.00 0.00 35.89 3.41
613 658 2.293677 CGCGTAGTTCTAGGTCATCCAT 59.706 50.000 0.00 0.00 35.89 3.41
614 659 3.243434 CGCGTAGTTCTAGGTCATCCATT 60.243 47.826 0.00 0.00 35.89 3.16
615 660 4.694339 GCGTAGTTCTAGGTCATCCATTT 58.306 43.478 0.00 0.00 35.89 2.32
616 661 4.508124 GCGTAGTTCTAGGTCATCCATTTG 59.492 45.833 0.00 0.00 35.89 2.32
617 662 5.681437 GCGTAGTTCTAGGTCATCCATTTGA 60.681 44.000 0.00 0.00 35.89 2.69
618 663 5.749109 CGTAGTTCTAGGTCATCCATTTGAC 59.251 44.000 0.00 0.00 44.27 3.18
619 664 6.405953 CGTAGTTCTAGGTCATCCATTTGACT 60.406 42.308 4.75 0.00 44.39 3.41
620 665 7.201794 CGTAGTTCTAGGTCATCCATTTGACTA 60.202 40.741 4.75 0.00 44.39 2.59
621 666 7.496346 AGTTCTAGGTCATCCATTTGACTAA 57.504 36.000 4.75 0.00 44.39 2.24
622 667 7.331791 AGTTCTAGGTCATCCATTTGACTAAC 58.668 38.462 4.75 5.15 44.39 2.34
623 668 7.181125 AGTTCTAGGTCATCCATTTGACTAACT 59.819 37.037 4.75 6.84 44.39 2.24
624 669 8.475639 GTTCTAGGTCATCCATTTGACTAACTA 58.524 37.037 4.75 0.00 44.39 2.24
625 670 8.603898 TCTAGGTCATCCATTTGACTAACTAA 57.396 34.615 4.75 0.00 44.39 2.24
626 671 9.042450 TCTAGGTCATCCATTTGACTAACTAAA 57.958 33.333 4.75 0.00 44.39 1.85
627 672 9.838339 CTAGGTCATCCATTTGACTAACTAAAT 57.162 33.333 4.75 0.00 44.39 1.40
663 708 8.821686 TGTCACCAAAAGTATATCATTGGATT 57.178 30.769 15.99 0.00 44.01 3.01
664 709 8.902806 TGTCACCAAAAGTATATCATTGGATTC 58.097 33.333 15.99 8.59 44.01 2.52
665 710 9.125026 GTCACCAAAAGTATATCATTGGATTCT 57.875 33.333 15.99 0.00 44.01 2.40
666 711 9.699410 TCACCAAAAGTATATCATTGGATTCTT 57.301 29.630 15.99 0.00 44.01 2.52
679 724 9.872684 ATCATTGGATTCTTAAATGGATGTAGT 57.127 29.630 0.00 0.00 33.14 2.73
680 725 9.699410 TCATTGGATTCTTAAATGGATGTAGTT 57.301 29.630 0.00 0.00 33.14 2.24
683 728 8.877864 TGGATTCTTAAATGGATGTAGTTTGT 57.122 30.769 0.00 0.00 0.00 2.83
684 729 9.967451 TGGATTCTTAAATGGATGTAGTTTGTA 57.033 29.630 0.00 0.00 0.00 2.41
739 784 9.606631 AGCTAGTTAAATTCTCAACCTAGAATG 57.393 33.333 0.15 0.00 43.75 2.67
740 785 9.601217 GCTAGTTAAATTCTCAACCTAGAATGA 57.399 33.333 0.15 0.00 43.75 2.57
742 787 8.480643 AGTTAAATTCTCAACCTAGAATGACG 57.519 34.615 0.15 0.00 43.75 4.35
743 788 5.803020 AAATTCTCAACCTAGAATGACGC 57.197 39.130 0.15 0.00 43.75 5.19
744 789 2.561733 TCTCAACCTAGAATGACGCG 57.438 50.000 3.53 3.53 0.00 6.01
745 790 0.924090 CTCAACCTAGAATGACGCGC 59.076 55.000 5.73 0.00 0.00 6.86
746 791 0.245266 TCAACCTAGAATGACGCGCA 59.755 50.000 5.73 5.73 0.00 6.09
747 792 1.134818 TCAACCTAGAATGACGCGCAT 60.135 47.619 5.73 8.26 39.43 4.73
748 793 1.004610 CAACCTAGAATGACGCGCATG 60.005 52.381 5.73 1.31 37.28 4.06
749 794 1.154205 ACCTAGAATGACGCGCATGC 61.154 55.000 5.73 7.91 37.28 4.06
750 795 0.877649 CCTAGAATGACGCGCATGCT 60.878 55.000 22.08 22.08 45.24 3.79
751 796 0.506080 CTAGAATGACGCGCATGCTC 59.494 55.000 22.07 6.91 38.61 4.26
752 797 0.103026 TAGAATGACGCGCATGCTCT 59.897 50.000 22.07 18.91 38.61 4.09
753 798 1.150567 AGAATGACGCGCATGCTCTC 61.151 55.000 17.13 8.02 38.61 3.20
754 799 1.150567 GAATGACGCGCATGCTCTCT 61.151 55.000 17.13 0.00 37.28 3.10
755 800 1.426816 AATGACGCGCATGCTCTCTG 61.427 55.000 17.13 0.00 37.28 3.35
756 801 2.507992 GACGCGCATGCTCTCTGT 60.508 61.111 17.13 6.49 39.65 3.41
757 802 1.226688 GACGCGCATGCTCTCTGTA 60.227 57.895 17.13 0.00 39.65 2.74
758 803 0.802222 GACGCGCATGCTCTCTGTAA 60.802 55.000 17.13 0.00 39.65 2.41
759 804 0.389817 ACGCGCATGCTCTCTGTAAA 60.390 50.000 17.13 0.00 39.65 2.01
760 805 0.025513 CGCGCATGCTCTCTGTAAAC 59.974 55.000 17.13 0.00 39.65 2.01
761 806 0.375106 GCGCATGCTCTCTGTAAACC 59.625 55.000 17.13 0.00 38.39 3.27
762 807 0.647410 CGCATGCTCTCTGTAAACCG 59.353 55.000 17.13 0.00 0.00 4.44
763 808 1.735700 CGCATGCTCTCTGTAAACCGA 60.736 52.381 17.13 0.00 0.00 4.69
764 809 1.929836 GCATGCTCTCTGTAAACCGAG 59.070 52.381 11.37 0.00 0.00 4.63
765 810 2.417379 GCATGCTCTCTGTAAACCGAGA 60.417 50.000 11.37 4.49 35.20 4.04
766 811 3.182967 CATGCTCTCTGTAAACCGAGAC 58.817 50.000 0.66 0.62 33.11 3.36
767 812 1.199327 TGCTCTCTGTAAACCGAGACG 59.801 52.381 0.66 0.00 33.11 4.18
837 885 1.407656 AACTCCACGGCTCCAACTCA 61.408 55.000 0.00 0.00 0.00 3.41
839 887 2.743928 CCACGGCTCCAACTCAGC 60.744 66.667 0.00 0.00 36.02 4.26
1766 1829 3.984193 CTTGCAGGAGAAGGGGGCG 62.984 68.421 0.00 0.00 0.00 6.13
1792 1855 0.250338 GGGAACACTGAGGCGAAGTT 60.250 55.000 0.00 0.00 0.00 2.66
1901 1964 1.244816 GGGTAAAGCGCAAGAAGGTT 58.755 50.000 11.47 0.00 43.02 3.50
1907 1970 1.081840 GCGCAAGAAGGTTGCAGAC 60.082 57.895 0.30 0.00 45.14 3.51
2180 2243 9.260002 GACCATTTTGTACTTGTTTGATGAATT 57.740 29.630 0.00 0.00 0.00 2.17
2323 2393 0.602638 CCAACTGCCGACTTGCTACA 60.603 55.000 0.00 0.00 0.00 2.74
2434 2505 6.722129 AGTGACCTTATCCATACCAGTAGATC 59.278 42.308 0.00 0.00 0.00 2.75
2509 2580 1.871080 CTGAAGAACAACGCTCACCT 58.129 50.000 0.00 0.00 0.00 4.00
2652 2723 3.501349 TGGTTTGGTTTGCCAGCTAATA 58.499 40.909 0.00 0.00 46.91 0.98
2671 2742 4.821589 CTCCGGGCTTGTCTCGGC 62.822 72.222 0.00 0.00 43.10 5.54
2682 2753 1.153549 GTCTCGGCCCTAGCACTTG 60.154 63.158 0.00 0.00 42.56 3.16
2690 2761 0.251341 CCCTAGCACTTGGGCAAACT 60.251 55.000 4.18 0.00 38.71 2.66
2737 2808 8.773645 TGTACAGAAACATATGTTCAACTCAAG 58.226 33.333 21.02 13.07 37.25 3.02
2970 3042 7.398289 TGGAGAGATAGATGGAATGGATTTT 57.602 36.000 0.00 0.00 0.00 1.82
3003 3077 3.587498 TCCCTAGAATATGGGTGGTGAG 58.413 50.000 0.00 0.00 43.74 3.51
3005 3079 3.973973 CCCTAGAATATGGGTGGTGAGAA 59.026 47.826 0.00 0.00 38.65 2.87
3006 3080 4.599241 CCCTAGAATATGGGTGGTGAGAAT 59.401 45.833 0.00 0.00 38.65 2.40
3007 3081 5.785423 CCCTAGAATATGGGTGGTGAGAATA 59.215 44.000 0.00 0.00 38.65 1.75
3008 3082 6.445139 CCCTAGAATATGGGTGGTGAGAATAT 59.555 42.308 0.00 0.00 38.65 1.28
3009 3083 7.334090 CCTAGAATATGGGTGGTGAGAATATG 58.666 42.308 0.00 0.00 0.00 1.78
3010 3084 6.131972 AGAATATGGGTGGTGAGAATATGG 57.868 41.667 0.00 0.00 0.00 2.74
3011 3085 4.934797 ATATGGGTGGTGAGAATATGGG 57.065 45.455 0.00 0.00 0.00 4.00
3012 3086 2.278657 TGGGTGGTGAGAATATGGGA 57.721 50.000 0.00 0.00 0.00 4.37
3013 3087 2.126882 TGGGTGGTGAGAATATGGGAG 58.873 52.381 0.00 0.00 0.00 4.30
3014 3088 2.293519 TGGGTGGTGAGAATATGGGAGA 60.294 50.000 0.00 0.00 0.00 3.71
3015 3089 2.370189 GGGTGGTGAGAATATGGGAGAG 59.630 54.545 0.00 0.00 0.00 3.20
3016 3090 2.370189 GGTGGTGAGAATATGGGAGAGG 59.630 54.545 0.00 0.00 0.00 3.69
3017 3091 3.309296 GTGGTGAGAATATGGGAGAGGA 58.691 50.000 0.00 0.00 0.00 3.71
3018 3092 3.711704 GTGGTGAGAATATGGGAGAGGAA 59.288 47.826 0.00 0.00 0.00 3.36
3019 3093 4.164221 GTGGTGAGAATATGGGAGAGGAAA 59.836 45.833 0.00 0.00 0.00 3.13
3020 3094 4.164221 TGGTGAGAATATGGGAGAGGAAAC 59.836 45.833 0.00 0.00 0.00 2.78
3021 3095 4.445019 GGTGAGAATATGGGAGAGGAAACC 60.445 50.000 0.00 0.00 0.00 3.27
3022 3096 3.716872 TGAGAATATGGGAGAGGAAACCC 59.283 47.826 0.00 0.00 45.74 4.11
3026 3100 3.087988 GGGAGAGGAAACCCACCC 58.912 66.667 0.00 0.00 44.96 4.61
3027 3101 2.613482 GGGAGAGGAAACCCACCCC 61.613 68.421 0.00 0.00 44.96 4.95
3028 3102 2.613482 GGAGAGGAAACCCACCCCC 61.613 68.421 0.00 0.00 0.00 5.40
3029 3103 2.933834 AGAGGAAACCCACCCCCG 60.934 66.667 0.00 0.00 0.00 5.73
3030 3104 4.735358 GAGGAAACCCACCCCCGC 62.735 72.222 0.00 0.00 0.00 6.13
3071 3145 4.832608 CTTCGCCCCCGCCACTAC 62.833 72.222 0.00 0.00 0.00 2.73
3077 3151 3.782443 CCCCGCCACTACCTCCAC 61.782 72.222 0.00 0.00 0.00 4.02
3078 3152 3.782443 CCCGCCACTACCTCCACC 61.782 72.222 0.00 0.00 0.00 4.61
3079 3153 3.782443 CCGCCACTACCTCCACCC 61.782 72.222 0.00 0.00 0.00 4.61
3080 3154 3.782443 CGCCACTACCTCCACCCC 61.782 72.222 0.00 0.00 0.00 4.95
3081 3155 3.408853 GCCACTACCTCCACCCCC 61.409 72.222 0.00 0.00 0.00 5.40
3082 3156 3.081409 CCACTACCTCCACCCCCG 61.081 72.222 0.00 0.00 0.00 5.73
3083 3157 3.782443 CACTACCTCCACCCCCGC 61.782 72.222 0.00 0.00 0.00 6.13
3100 3174 4.685026 CCGCCGCCGTAGATCTCG 62.685 72.222 0.00 2.90 0.00 4.04
3103 3177 4.685026 CCGCCGTAGATCTCGCCG 62.685 72.222 0.00 4.74 0.00 6.46
3106 3180 3.592814 CCGTAGATCTCGCCGCCA 61.593 66.667 0.00 0.00 0.00 5.69
3107 3181 2.353607 CGTAGATCTCGCCGCCAC 60.354 66.667 0.00 0.00 0.00 5.01
3108 3182 2.027751 GTAGATCTCGCCGCCACC 59.972 66.667 0.00 0.00 0.00 4.61
3109 3183 3.224324 TAGATCTCGCCGCCACCC 61.224 66.667 0.00 0.00 0.00 4.61
3110 3184 3.733507 TAGATCTCGCCGCCACCCT 62.734 63.158 0.00 0.00 0.00 4.34
3111 3185 4.593864 GATCTCGCCGCCACCCTC 62.594 72.222 0.00 0.00 0.00 4.30
3121 3195 3.854669 CCACCCTCCTAGCCGCAG 61.855 72.222 0.00 0.00 0.00 5.18
3181 3255 4.785453 CCCTCACCAAGCCCGCTC 62.785 72.222 0.00 0.00 0.00 5.03
3203 3277 4.864334 GCCCCATGGAGTCGCTGG 62.864 72.222 15.22 4.78 0.00 4.85
3204 3278 4.864334 CCCCATGGAGTCGCTGGC 62.864 72.222 15.22 0.00 0.00 4.85
3205 3279 4.864334 CCCATGGAGTCGCTGGCC 62.864 72.222 15.22 0.00 0.00 5.36
3206 3280 4.100084 CCATGGAGTCGCTGGCCA 62.100 66.667 5.56 4.71 35.91 5.36
3207 3281 2.513204 CATGGAGTCGCTGGCCAG 60.513 66.667 29.34 29.34 34.74 4.85
3208 3282 2.685017 ATGGAGTCGCTGGCCAGA 60.685 61.111 37.21 14.52 34.74 3.86
3209 3283 2.068821 ATGGAGTCGCTGGCCAGAT 61.069 57.895 37.21 18.03 34.74 2.90
3210 3284 2.037620 ATGGAGTCGCTGGCCAGATC 62.038 60.000 37.21 24.47 34.74 2.75
3211 3285 2.107953 GAGTCGCTGGCCAGATCC 59.892 66.667 37.21 20.96 0.00 3.36
3212 3286 2.685017 AGTCGCTGGCCAGATCCA 60.685 61.111 37.21 13.04 34.42 3.41
3213 3287 2.512515 GTCGCTGGCCAGATCCAC 60.513 66.667 37.21 20.59 31.74 4.02
3214 3288 4.147449 TCGCTGGCCAGATCCACG 62.147 66.667 37.21 27.50 34.38 4.94
3216 3290 4.864334 GCTGGCCAGATCCACGGG 62.864 72.222 37.21 7.81 36.93 5.28
3217 3291 4.181010 CTGGCCAGATCCACGGGG 62.181 72.222 29.88 0.00 34.46 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.323774 ACCATCAAGGCATGAATCCAT 57.676 42.857 0.00 0.00 42.54 3.41
5 6 2.832643 ACCATCAAGGCATGAATCCA 57.167 45.000 0.00 0.00 42.54 3.41
6 7 4.021719 CCATAACCATCAAGGCATGAATCC 60.022 45.833 0.00 0.00 42.54 3.01
7 8 4.828939 TCCATAACCATCAAGGCATGAATC 59.171 41.667 0.00 0.00 42.54 2.52
8 9 4.586001 GTCCATAACCATCAAGGCATGAAT 59.414 41.667 0.00 0.00 42.54 2.57
9 10 3.953612 GTCCATAACCATCAAGGCATGAA 59.046 43.478 0.00 0.00 42.54 2.57
10 11 3.554934 GTCCATAACCATCAAGGCATGA 58.445 45.455 0.00 0.00 43.14 3.07
11 12 2.291465 CGTCCATAACCATCAAGGCATG 59.709 50.000 0.00 0.00 43.14 4.06
12 13 2.172505 TCGTCCATAACCATCAAGGCAT 59.827 45.455 0.00 0.00 43.14 4.40
13 14 1.557371 TCGTCCATAACCATCAAGGCA 59.443 47.619 0.00 0.00 43.14 4.75
14 15 2.213499 CTCGTCCATAACCATCAAGGC 58.787 52.381 0.00 0.00 43.14 4.35
15 16 3.543680 ACTCGTCCATAACCATCAAGG 57.456 47.619 0.00 0.00 45.67 3.61
16 17 5.006746 GCTAAACTCGTCCATAACCATCAAG 59.993 44.000 0.00 0.00 0.00 3.02
17 18 4.873827 GCTAAACTCGTCCATAACCATCAA 59.126 41.667 0.00 0.00 0.00 2.57
18 19 4.081365 TGCTAAACTCGTCCATAACCATCA 60.081 41.667 0.00 0.00 0.00 3.07
19 20 4.439057 TGCTAAACTCGTCCATAACCATC 58.561 43.478 0.00 0.00 0.00 3.51
20 21 4.481368 TGCTAAACTCGTCCATAACCAT 57.519 40.909 0.00 0.00 0.00 3.55
21 22 3.965379 TGCTAAACTCGTCCATAACCA 57.035 42.857 0.00 0.00 0.00 3.67
22 23 4.189231 ACATGCTAAACTCGTCCATAACC 58.811 43.478 0.00 0.00 0.00 2.85
23 24 5.796350 AACATGCTAAACTCGTCCATAAC 57.204 39.130 0.00 0.00 0.00 1.89
24 25 9.602568 TTATAAACATGCTAAACTCGTCCATAA 57.397 29.630 0.00 0.00 0.00 1.90
25 26 9.256477 CTTATAAACATGCTAAACTCGTCCATA 57.744 33.333 0.00 0.00 0.00 2.74
26 27 7.985184 TCTTATAAACATGCTAAACTCGTCCAT 59.015 33.333 0.00 0.00 0.00 3.41
27 28 7.324935 TCTTATAAACATGCTAAACTCGTCCA 58.675 34.615 0.00 0.00 0.00 4.02
28 29 7.042658 CCTCTTATAAACATGCTAAACTCGTCC 60.043 40.741 0.00 0.00 0.00 4.79
29 30 7.705325 TCCTCTTATAAACATGCTAAACTCGTC 59.295 37.037 0.00 0.00 0.00 4.20
30 31 7.553334 TCCTCTTATAAACATGCTAAACTCGT 58.447 34.615 0.00 0.00 0.00 4.18
31 32 8.420374 TTCCTCTTATAAACATGCTAAACTCG 57.580 34.615 0.00 0.00 0.00 4.18
48 49 9.973661 TCTTGGAATGTATCATTTTTCCTCTTA 57.026 29.630 0.00 0.00 38.73 2.10
49 50 8.884124 TCTTGGAATGTATCATTTTTCCTCTT 57.116 30.769 0.00 0.00 38.73 2.85
50 51 8.884124 TTCTTGGAATGTATCATTTTTCCTCT 57.116 30.769 0.00 0.00 38.73 3.69
51 52 9.927668 TTTTCTTGGAATGTATCATTTTTCCTC 57.072 29.630 0.00 0.00 38.73 3.71
58 59 9.439500 CAACCATTTTTCTTGGAATGTATCATT 57.561 29.630 0.00 0.00 37.69 2.57
59 60 8.596293 ACAACCATTTTTCTTGGAATGTATCAT 58.404 29.630 0.00 0.00 36.65 2.45
60 61 7.871973 CACAACCATTTTTCTTGGAATGTATCA 59.128 33.333 0.00 0.00 36.65 2.15
61 62 7.148590 GCACAACCATTTTTCTTGGAATGTATC 60.149 37.037 0.00 0.00 36.65 2.24
62 63 6.650390 GCACAACCATTTTTCTTGGAATGTAT 59.350 34.615 0.00 0.00 36.65 2.29
63 64 5.988561 GCACAACCATTTTTCTTGGAATGTA 59.011 36.000 0.00 0.00 36.65 2.29
64 65 4.815846 GCACAACCATTTTTCTTGGAATGT 59.184 37.500 0.00 0.00 37.90 2.71
65 66 5.058490 AGCACAACCATTTTTCTTGGAATG 58.942 37.500 0.00 0.00 37.69 2.67
66 67 5.163322 TGAGCACAACCATTTTTCTTGGAAT 60.163 36.000 0.00 0.00 37.69 3.01
67 68 4.161189 TGAGCACAACCATTTTTCTTGGAA 59.839 37.500 0.00 0.00 37.69 3.53
68 69 3.703556 TGAGCACAACCATTTTTCTTGGA 59.296 39.130 0.00 0.00 37.69 3.53
69 70 4.053295 CTGAGCACAACCATTTTTCTTGG 58.947 43.478 0.00 0.00 40.26 3.61
70 71 3.492011 GCTGAGCACAACCATTTTTCTTG 59.508 43.478 0.00 0.00 0.00 3.02
71 72 3.385755 AGCTGAGCACAACCATTTTTCTT 59.614 39.130 7.39 0.00 0.00 2.52
72 73 2.961062 AGCTGAGCACAACCATTTTTCT 59.039 40.909 7.39 0.00 0.00 2.52
73 74 3.054878 CAGCTGAGCACAACCATTTTTC 58.945 45.455 8.42 0.00 0.00 2.29
74 75 2.431782 ACAGCTGAGCACAACCATTTTT 59.568 40.909 23.35 0.00 0.00 1.94
75 76 2.034124 ACAGCTGAGCACAACCATTTT 58.966 42.857 23.35 0.00 0.00 1.82
76 77 1.696063 ACAGCTGAGCACAACCATTT 58.304 45.000 23.35 0.00 0.00 2.32
77 78 2.566833 TACAGCTGAGCACAACCATT 57.433 45.000 23.35 0.00 0.00 3.16
78 79 2.430465 CTTACAGCTGAGCACAACCAT 58.570 47.619 23.35 0.00 0.00 3.55
79 80 1.543208 CCTTACAGCTGAGCACAACCA 60.543 52.381 23.35 0.00 0.00 3.67
80 81 1.160137 CCTTACAGCTGAGCACAACC 58.840 55.000 23.35 0.00 0.00 3.77
81 82 1.884235 ACCTTACAGCTGAGCACAAC 58.116 50.000 23.35 0.00 0.00 3.32
82 83 2.638480 AACCTTACAGCTGAGCACAA 57.362 45.000 23.35 5.12 0.00 3.33
83 84 2.897326 TCTAACCTTACAGCTGAGCACA 59.103 45.455 23.35 0.00 0.00 4.57
84 85 3.254892 GTCTAACCTTACAGCTGAGCAC 58.745 50.000 23.35 2.44 0.00 4.40
85 86 2.233922 GGTCTAACCTTACAGCTGAGCA 59.766 50.000 23.35 1.55 34.73 4.26
86 87 2.735762 CGGTCTAACCTTACAGCTGAGC 60.736 54.545 23.35 0.00 35.66 4.26
87 88 2.492484 ACGGTCTAACCTTACAGCTGAG 59.508 50.000 23.35 8.22 35.66 3.35
88 89 2.230508 CACGGTCTAACCTTACAGCTGA 59.769 50.000 23.35 0.48 35.66 4.26
89 90 2.607187 CACGGTCTAACCTTACAGCTG 58.393 52.381 13.48 13.48 35.66 4.24
92 93 1.206371 CCCCACGGTCTAACCTTACAG 59.794 57.143 0.00 0.00 35.66 2.74
103 104 3.078836 TCGGATTCCCCCACGGTC 61.079 66.667 0.00 0.00 0.00 4.79
107 108 2.325393 AATCGCTCGGATTCCCCCAC 62.325 60.000 0.00 0.00 41.57 4.61
109 110 1.598130 CAATCGCTCGGATTCCCCC 60.598 63.158 0.00 0.00 43.52 5.40
117 118 3.039202 GCACCAACCAATCGCTCGG 62.039 63.158 0.00 0.00 0.00 4.63
137 138 4.582240 TGCCACATCAGTGTTCAATTTGTA 59.418 37.500 0.00 0.00 44.39 2.41
143 144 2.861274 TGATGCCACATCAGTGTTCAA 58.139 42.857 6.17 0.00 44.39 2.69
145 146 2.751259 ACATGATGCCACATCAGTGTTC 59.249 45.455 14.88 0.00 44.39 3.18
161 162 4.763279 ACAATTCTCTCAACATGCACATGA 59.237 37.500 17.19 0.00 41.20 3.07
165 166 6.246420 ACTAACAATTCTCTCAACATGCAC 57.754 37.500 0.00 0.00 0.00 4.57
198 199 7.955918 ACTCATCCTGCATTTTTAAGAAGTTT 58.044 30.769 0.00 0.00 0.00 2.66
206 207 7.828717 TCATTCAGTACTCATCCTGCATTTTTA 59.171 33.333 0.00 0.00 0.00 1.52
209 210 5.748402 TCATTCAGTACTCATCCTGCATTT 58.252 37.500 0.00 0.00 0.00 2.32
210 211 5.363562 TCATTCAGTACTCATCCTGCATT 57.636 39.130 0.00 0.00 0.00 3.56
211 212 5.563876 ATCATTCAGTACTCATCCTGCAT 57.436 39.130 0.00 0.00 0.00 3.96
212 213 5.121105 CAATCATTCAGTACTCATCCTGCA 58.879 41.667 0.00 0.00 0.00 4.41
213 214 5.121811 ACAATCATTCAGTACTCATCCTGC 58.878 41.667 0.00 0.00 0.00 4.85
214 215 6.019237 CGAACAATCATTCAGTACTCATCCTG 60.019 42.308 0.00 0.00 0.00 3.86
215 216 6.045318 CGAACAATCATTCAGTACTCATCCT 58.955 40.000 0.00 0.00 0.00 3.24
222 223 8.462143 TCTTAAGACGAACAATCATTCAGTAC 57.538 34.615 0.00 0.00 0.00 2.73
336 338 9.719355 GGGTTTTTGGTAATGATATGAACTTTT 57.281 29.630 0.00 0.00 0.00 2.27
337 339 8.032451 CGGGTTTTTGGTAATGATATGAACTTT 58.968 33.333 0.00 0.00 0.00 2.66
338 340 7.394923 TCGGGTTTTTGGTAATGATATGAACTT 59.605 33.333 0.00 0.00 0.00 2.66
351 353 6.475596 TTTTATGGTTTCGGGTTTTTGGTA 57.524 33.333 0.00 0.00 0.00 3.25
353 355 6.346999 CGATTTTTATGGTTTCGGGTTTTTGG 60.347 38.462 0.00 0.00 0.00 3.28
354 356 6.201234 ACGATTTTTATGGTTTCGGGTTTTTG 59.799 34.615 0.00 0.00 34.28 2.44
355 357 6.282167 ACGATTTTTATGGTTTCGGGTTTTT 58.718 32.000 0.00 0.00 34.28 1.94
356 358 5.845103 ACGATTTTTATGGTTTCGGGTTTT 58.155 33.333 0.00 0.00 34.28 2.43
357 359 5.456548 ACGATTTTTATGGTTTCGGGTTT 57.543 34.783 0.00 0.00 34.28 3.27
360 362 8.468720 AATTTTACGATTTTTATGGTTTCGGG 57.531 30.769 0.00 0.00 34.28 5.14
386 390 3.886505 TGCATTCTAAAACCAAACCGACT 59.113 39.130 0.00 0.00 0.00 4.18
411 415 6.292381 GGTTGCAACATCGTAATAGATCACTC 60.292 42.308 29.55 3.17 0.00 3.51
415 419 4.814234 TGGGTTGCAACATCGTAATAGATC 59.186 41.667 29.55 8.33 0.00 2.75
462 466 5.163804 GGTTGCAACGGAACAAAATTTCTTT 60.164 36.000 22.67 0.00 0.00 2.52
485 489 8.543774 AGACTTACTAGCAAATATATCCATGGG 58.456 37.037 13.02 0.00 0.00 4.00
486 490 9.950496 AAGACTTACTAGCAAATATATCCATGG 57.050 33.333 4.97 4.97 0.00 3.66
498 543 9.772973 TTTCTCACATTTAAGACTTACTAGCAA 57.227 29.630 0.00 0.00 0.00 3.91
527 572 7.010160 ACCTCTCACATTTAATTCCCTGAAAA 58.990 34.615 0.00 0.00 0.00 2.29
528 573 6.552008 ACCTCTCACATTTAATTCCCTGAAA 58.448 36.000 0.00 0.00 0.00 2.69
529 574 6.139679 ACCTCTCACATTTAATTCCCTGAA 57.860 37.500 0.00 0.00 0.00 3.02
530 575 5.779241 ACCTCTCACATTTAATTCCCTGA 57.221 39.130 0.00 0.00 0.00 3.86
531 576 7.938140 TTAACCTCTCACATTTAATTCCCTG 57.062 36.000 0.00 0.00 0.00 4.45
543 588 9.670442 AGGGAGTATTTATATTAACCTCTCACA 57.330 33.333 5.93 0.00 0.00 3.58
545 590 9.322769 GGAGGGAGTATTTATATTAACCTCTCA 57.677 37.037 0.00 0.00 41.23 3.27
546 591 9.322769 TGGAGGGAGTATTTATATTAACCTCTC 57.677 37.037 0.00 2.88 41.23 3.20
547 592 9.860393 ATGGAGGGAGTATTTATATTAACCTCT 57.140 33.333 0.00 0.00 41.23 3.69
549 594 9.860393 AGATGGAGGGAGTATTTATATTAACCT 57.140 33.333 0.00 0.00 0.00 3.50
551 596 9.804758 CGAGATGGAGGGAGTATTTATATTAAC 57.195 37.037 0.00 0.00 0.00 2.01
552 597 8.978472 CCGAGATGGAGGGAGTATTTATATTAA 58.022 37.037 0.00 0.00 42.00 1.40
553 598 8.120538 ACCGAGATGGAGGGAGTATTTATATTA 58.879 37.037 0.00 0.00 42.00 0.98
554 599 6.960542 ACCGAGATGGAGGGAGTATTTATATT 59.039 38.462 0.00 0.00 42.00 1.28
555 600 6.503944 ACCGAGATGGAGGGAGTATTTATAT 58.496 40.000 0.00 0.00 42.00 0.86
556 601 5.900437 ACCGAGATGGAGGGAGTATTTATA 58.100 41.667 0.00 0.00 42.00 0.98
557 602 4.753186 ACCGAGATGGAGGGAGTATTTAT 58.247 43.478 0.00 0.00 42.00 1.40
558 603 4.194678 ACCGAGATGGAGGGAGTATTTA 57.805 45.455 0.00 0.00 42.00 1.40
559 604 3.047695 ACCGAGATGGAGGGAGTATTT 57.952 47.619 0.00 0.00 42.00 1.40
560 605 2.777459 ACCGAGATGGAGGGAGTATT 57.223 50.000 0.00 0.00 42.00 1.89
561 606 2.777459 AACCGAGATGGAGGGAGTAT 57.223 50.000 0.00 0.00 42.00 2.12
562 607 2.544844 AAACCGAGATGGAGGGAGTA 57.455 50.000 0.00 0.00 42.00 2.59
563 608 2.544844 TAAACCGAGATGGAGGGAGT 57.455 50.000 0.00 0.00 42.00 3.85
564 609 3.511934 CCTATAAACCGAGATGGAGGGAG 59.488 52.174 0.00 0.00 42.00 4.30
565 610 3.507411 CCTATAAACCGAGATGGAGGGA 58.493 50.000 0.00 0.00 42.00 4.20
566 611 2.567615 CCCTATAAACCGAGATGGAGGG 59.432 54.545 0.00 0.00 39.75 4.30
567 612 2.028020 GCCCTATAAACCGAGATGGAGG 60.028 54.545 0.00 0.00 42.00 4.30
568 613 2.352814 CGCCCTATAAACCGAGATGGAG 60.353 54.545 0.00 0.00 42.00 3.86
569 614 1.616865 CGCCCTATAAACCGAGATGGA 59.383 52.381 0.00 0.00 42.00 3.41
570 615 1.343465 ACGCCCTATAAACCGAGATGG 59.657 52.381 0.00 0.00 46.41 3.51
571 616 2.404215 CACGCCCTATAAACCGAGATG 58.596 52.381 0.00 0.00 0.00 2.90
572 617 1.270147 GCACGCCCTATAAACCGAGAT 60.270 52.381 0.00 0.00 0.00 2.75
573 618 0.103572 GCACGCCCTATAAACCGAGA 59.896 55.000 0.00 0.00 0.00 4.04
574 619 1.213094 CGCACGCCCTATAAACCGAG 61.213 60.000 0.00 0.00 0.00 4.63
575 620 1.227031 CGCACGCCCTATAAACCGA 60.227 57.895 0.00 0.00 0.00 4.69
576 621 2.877974 GCGCACGCCCTATAAACCG 61.878 63.158 0.30 0.00 34.56 4.44
577 622 2.877974 CGCGCACGCCCTATAAACC 61.878 63.158 8.75 0.00 37.98 3.27
578 623 0.871163 TACGCGCACGCCCTATAAAC 60.871 55.000 5.73 0.00 45.53 2.01
579 624 0.595567 CTACGCGCACGCCCTATAAA 60.596 55.000 5.73 0.00 45.53 1.40
580 625 1.008194 CTACGCGCACGCCCTATAA 60.008 57.895 5.73 0.00 45.53 0.98
581 626 1.727511 AACTACGCGCACGCCCTATA 61.728 55.000 5.73 0.00 45.53 1.31
582 627 2.948840 GAACTACGCGCACGCCCTAT 62.949 60.000 5.73 0.00 45.53 2.57
583 628 3.688475 GAACTACGCGCACGCCCTA 62.688 63.158 5.73 0.00 45.53 3.53
585 630 3.688475 TAGAACTACGCGCACGCCC 62.688 63.158 5.73 0.00 45.53 6.13
586 631 2.202518 TAGAACTACGCGCACGCC 60.203 61.111 5.73 0.00 45.53 5.68
587 632 2.222217 CCTAGAACTACGCGCACGC 61.222 63.158 5.73 4.64 45.53 5.34
589 634 0.169672 TGACCTAGAACTACGCGCAC 59.830 55.000 5.73 0.00 0.00 5.34
590 635 1.065102 GATGACCTAGAACTACGCGCA 59.935 52.381 5.73 0.00 0.00 6.09
591 636 1.599916 GGATGACCTAGAACTACGCGC 60.600 57.143 5.73 0.00 0.00 6.86
592 637 1.674441 TGGATGACCTAGAACTACGCG 59.326 52.381 3.53 3.53 37.04 6.01
593 638 4.323553 AATGGATGACCTAGAACTACGC 57.676 45.455 0.00 0.00 37.04 4.42
594 639 5.749109 GTCAAATGGATGACCTAGAACTACG 59.251 44.000 0.00 0.00 43.11 3.51
637 682 9.425248 AATCCAATGATATACTTTTGGTGACAT 57.575 29.630 8.48 0.00 42.32 3.06
638 683 8.821686 AATCCAATGATATACTTTTGGTGACA 57.178 30.769 8.48 0.00 39.83 3.58
639 684 9.125026 AGAATCCAATGATATACTTTTGGTGAC 57.875 33.333 8.48 0.00 0.00 3.67
640 685 9.699410 AAGAATCCAATGATATACTTTTGGTGA 57.301 29.630 8.48 0.00 0.00 4.02
653 698 9.872684 ACTACATCCATTTAAGAATCCAATGAT 57.127 29.630 0.00 0.00 30.66 2.45
654 699 9.699410 AACTACATCCATTTAAGAATCCAATGA 57.301 29.630 0.00 0.00 30.66 2.57
657 702 9.308000 ACAAACTACATCCATTTAAGAATCCAA 57.692 29.630 0.00 0.00 0.00 3.53
658 703 8.877864 ACAAACTACATCCATTTAAGAATCCA 57.122 30.769 0.00 0.00 0.00 3.41
714 759 9.601217 TCATTCTAGGTTGAGAATTTAACTAGC 57.399 33.333 0.00 0.00 42.33 3.42
718 763 7.180748 GCGTCATTCTAGGTTGAGAATTTAAC 58.819 38.462 0.00 0.00 42.33 2.01
719 764 6.035650 CGCGTCATTCTAGGTTGAGAATTTAA 59.964 38.462 0.00 0.00 42.33 1.52
720 765 5.518847 CGCGTCATTCTAGGTTGAGAATTTA 59.481 40.000 0.00 0.00 42.33 1.40
721 766 4.330074 CGCGTCATTCTAGGTTGAGAATTT 59.670 41.667 0.00 0.00 42.33 1.82
722 767 3.865745 CGCGTCATTCTAGGTTGAGAATT 59.134 43.478 0.00 0.00 42.33 2.17
723 768 3.448686 CGCGTCATTCTAGGTTGAGAAT 58.551 45.455 0.00 0.00 45.17 2.40
724 769 2.876091 CGCGTCATTCTAGGTTGAGAA 58.124 47.619 0.00 0.00 39.71 2.87
725 770 1.469251 GCGCGTCATTCTAGGTTGAGA 60.469 52.381 8.43 0.00 0.00 3.27
726 771 0.924090 GCGCGTCATTCTAGGTTGAG 59.076 55.000 8.43 0.00 0.00 3.02
727 772 0.245266 TGCGCGTCATTCTAGGTTGA 59.755 50.000 8.43 0.00 0.00 3.18
728 773 1.004610 CATGCGCGTCATTCTAGGTTG 60.005 52.381 8.43 0.00 31.79 3.77
729 774 1.290203 CATGCGCGTCATTCTAGGTT 58.710 50.000 8.43 0.00 31.79 3.50
730 775 1.154205 GCATGCGCGTCATTCTAGGT 61.154 55.000 8.43 0.00 31.79 3.08
731 776 0.877649 AGCATGCGCGTCATTCTAGG 60.878 55.000 13.01 1.04 45.49 3.02
732 777 0.506080 GAGCATGCGCGTCATTCTAG 59.494 55.000 13.01 1.41 45.49 2.43
733 778 0.103026 AGAGCATGCGCGTCATTCTA 59.897 50.000 16.01 0.00 45.49 2.10
734 779 1.150567 GAGAGCATGCGCGTCATTCT 61.151 55.000 16.01 11.53 45.49 2.40
735 780 1.150567 AGAGAGCATGCGCGTCATTC 61.151 55.000 16.01 7.60 45.49 2.67
736 781 1.153489 AGAGAGCATGCGCGTCATT 60.153 52.632 16.01 0.00 45.49 2.57
737 782 1.881709 CAGAGAGCATGCGCGTCAT 60.882 57.895 16.01 9.21 45.49 3.06
738 783 1.933115 TACAGAGAGCATGCGCGTCA 61.933 55.000 16.01 6.86 45.49 4.35
739 784 0.802222 TTACAGAGAGCATGCGCGTC 60.802 55.000 16.01 13.14 45.49 5.19
740 785 0.389817 TTTACAGAGAGCATGCGCGT 60.390 50.000 16.01 10.40 45.49 6.01
741 786 0.025513 GTTTACAGAGAGCATGCGCG 59.974 55.000 16.01 0.00 45.49 6.86
742 787 0.375106 GGTTTACAGAGAGCATGCGC 59.625 55.000 14.17 14.17 38.99 6.09
743 788 0.647410 CGGTTTACAGAGAGCATGCG 59.353 55.000 13.01 0.00 0.00 4.73
744 789 1.929836 CTCGGTTTACAGAGAGCATGC 59.070 52.381 10.51 10.51 39.97 4.06
745 790 3.182967 GTCTCGGTTTACAGAGAGCATG 58.817 50.000 12.06 0.00 45.29 4.06
746 791 2.159366 CGTCTCGGTTTACAGAGAGCAT 60.159 50.000 12.06 0.00 45.29 3.79
747 792 1.199327 CGTCTCGGTTTACAGAGAGCA 59.801 52.381 12.06 0.00 45.29 4.26
748 793 1.467713 CCGTCTCGGTTTACAGAGAGC 60.468 57.143 12.06 7.44 45.29 4.09
749 794 1.132643 CCCGTCTCGGTTTACAGAGAG 59.867 57.143 12.06 7.43 45.29 3.20
750 795 1.171308 CCCGTCTCGGTTTACAGAGA 58.829 55.000 8.37 8.37 46.80 3.10
751 796 0.172803 CCCCGTCTCGGTTTACAGAG 59.827 60.000 7.40 3.98 46.80 3.35
752 797 1.252904 CCCCCGTCTCGGTTTACAGA 61.253 60.000 7.40 0.00 46.80 3.41
753 798 1.217244 CCCCCGTCTCGGTTTACAG 59.783 63.158 7.40 0.00 46.80 2.74
754 799 0.831288 TTCCCCCGTCTCGGTTTACA 60.831 55.000 7.40 0.00 46.80 2.41
755 800 0.108472 CTTCCCCCGTCTCGGTTTAC 60.108 60.000 7.40 0.00 46.80 2.01
756 801 0.542702 ACTTCCCCCGTCTCGGTTTA 60.543 55.000 7.40 0.00 46.80 2.01
757 802 0.542702 TACTTCCCCCGTCTCGGTTT 60.543 55.000 7.40 0.00 46.80 3.27
758 803 0.542702 TTACTTCCCCCGTCTCGGTT 60.543 55.000 7.40 0.00 46.80 4.44
759 804 0.325016 ATTACTTCCCCCGTCTCGGT 60.325 55.000 7.40 0.00 46.80 4.69
761 806 3.806625 TTTATTACTTCCCCCGTCTCG 57.193 47.619 0.00 0.00 0.00 4.04
762 807 5.298527 CCAAATTTATTACTTCCCCCGTCTC 59.701 44.000 0.00 0.00 0.00 3.36
763 808 5.198207 CCAAATTTATTACTTCCCCCGTCT 58.802 41.667 0.00 0.00 0.00 4.18
764 809 4.202080 GCCAAATTTATTACTTCCCCCGTC 60.202 45.833 0.00 0.00 0.00 4.79
765 810 3.702548 GCCAAATTTATTACTTCCCCCGT 59.297 43.478 0.00 0.00 0.00 5.28
766 811 3.958147 AGCCAAATTTATTACTTCCCCCG 59.042 43.478 0.00 0.00 0.00 5.73
767 812 5.538813 CCTAGCCAAATTTATTACTTCCCCC 59.461 44.000 0.00 0.00 0.00 5.40
768 813 5.538813 CCCTAGCCAAATTTATTACTTCCCC 59.461 44.000 0.00 0.00 0.00 4.81
769 814 5.538813 CCCCTAGCCAAATTTATTACTTCCC 59.461 44.000 0.00 0.00 0.00 3.97
770 815 5.010719 GCCCCTAGCCAAATTTATTACTTCC 59.989 44.000 0.00 0.00 34.35 3.46
771 816 6.085555 GCCCCTAGCCAAATTTATTACTTC 57.914 41.667 0.00 0.00 34.35 3.01
800 845 3.154710 AGTTTGTTAGGGCTAAAGTGGC 58.845 45.455 0.00 0.00 0.00 5.01
837 885 1.348036 GGCCCAATACTTATCCTCGCT 59.652 52.381 0.00 0.00 0.00 4.93
839 887 1.337823 CCGGCCCAATACTTATCCTCG 60.338 57.143 0.00 0.00 0.00 4.63
888 939 4.694233 AGTGCTGAGTGGCTGGCG 62.694 66.667 0.00 0.00 0.00 5.69
893 944 0.536006 AAGTTGGAGTGCTGAGTGGC 60.536 55.000 0.00 0.00 0.00 5.01
1766 1829 3.316573 CTCAGTGTTCCCCTCCGCC 62.317 68.421 0.00 0.00 0.00 6.13
1767 1830 2.266055 CTCAGTGTTCCCCTCCGC 59.734 66.667 0.00 0.00 0.00 5.54
1768 1831 2.982130 CCTCAGTGTTCCCCTCCG 59.018 66.667 0.00 0.00 0.00 4.63
1922 1985 0.898320 TGAGAGCCACTACCAGCTTC 59.102 55.000 0.00 0.00 40.11 3.86
2234 2300 8.325787 ACCACATCCAAAAACTATGTATGAGTA 58.674 33.333 0.00 0.00 0.00 2.59
2323 2393 1.640670 TCTAAAAGGCCCTGGCATTCT 59.359 47.619 8.69 0.00 44.64 2.40
2509 2580 1.066858 GCAGGACGGAGAATTCACAGA 60.067 52.381 8.44 0.00 0.00 3.41
2652 2723 2.427245 CCGAGACAAGCCCGGAGAT 61.427 63.158 0.73 0.00 45.58 2.75
2682 2753 6.016276 TCTCTAAAAATTCTCACAGTTTGCCC 60.016 38.462 0.00 0.00 0.00 5.36
2737 2808 1.680249 GGGAATGCTCCACTCCTCAAC 60.680 57.143 0.00 0.00 44.51 3.18
2893 2965 3.259374 CACTCTACTGACTCCAACCACAT 59.741 47.826 0.00 0.00 0.00 3.21
2970 3042 6.385176 CCATATTCTAGGGATGAGGCTGAATA 59.615 42.308 0.00 0.00 32.09 1.75
3009 3083 2.613482 GGGGTGGGTTTCCTCTCCC 61.613 68.421 0.00 0.00 40.48 4.30
3010 3084 2.613482 GGGGGTGGGTTTCCTCTCC 61.613 68.421 0.00 0.00 44.52 3.71
3011 3085 2.967946 CGGGGGTGGGTTTCCTCTC 61.968 68.421 0.00 0.00 0.00 3.20
3012 3086 2.933834 CGGGGGTGGGTTTCCTCT 60.934 66.667 0.00 0.00 0.00 3.69
3013 3087 4.735358 GCGGGGGTGGGTTTCCTC 62.735 72.222 0.00 0.00 0.00 3.71
3054 3128 4.832608 GTAGTGGCGGGGGCGAAG 62.833 72.222 0.00 0.00 0.00 3.79
3060 3134 3.782443 GTGGAGGTAGTGGCGGGG 61.782 72.222 0.00 0.00 0.00 5.73
3061 3135 3.782443 GGTGGAGGTAGTGGCGGG 61.782 72.222 0.00 0.00 0.00 6.13
3062 3136 3.782443 GGGTGGAGGTAGTGGCGG 61.782 72.222 0.00 0.00 0.00 6.13
3063 3137 3.782443 GGGGTGGAGGTAGTGGCG 61.782 72.222 0.00 0.00 0.00 5.69
3064 3138 3.408853 GGGGGTGGAGGTAGTGGC 61.409 72.222 0.00 0.00 0.00 5.01
3065 3139 3.081409 CGGGGGTGGAGGTAGTGG 61.081 72.222 0.00 0.00 0.00 4.00
3066 3140 3.782443 GCGGGGGTGGAGGTAGTG 61.782 72.222 0.00 0.00 0.00 2.74
3083 3157 4.685026 CGAGATCTACGGCGGCGG 62.685 72.222 35.05 18.65 0.00 6.13
3089 3163 3.592814 TGGCGGCGAGATCTACGG 61.593 66.667 12.98 7.11 0.00 4.02
3090 3164 2.353607 GTGGCGGCGAGATCTACG 60.354 66.667 12.98 2.13 0.00 3.51
3091 3165 2.027751 GGTGGCGGCGAGATCTAC 59.972 66.667 12.98 0.00 0.00 2.59
3092 3166 3.224324 GGGTGGCGGCGAGATCTA 61.224 66.667 12.98 0.00 0.00 1.98
3094 3168 4.593864 GAGGGTGGCGGCGAGATC 62.594 72.222 12.98 0.00 0.00 2.75
3104 3178 3.854669 CTGCGGCTAGGAGGGTGG 61.855 72.222 0.00 0.00 34.34 4.61
3164 3238 4.785453 GAGCGGGCTTGGTGAGGG 62.785 72.222 0.00 0.00 0.00 4.30
3186 3260 4.864334 CCAGCGACTCCATGGGGC 62.864 72.222 13.00 10.59 0.00 5.80
3187 3261 4.864334 GCCAGCGACTCCATGGGG 62.864 72.222 11.11 11.11 34.52 4.96
3188 3262 4.864334 GGCCAGCGACTCCATGGG 62.864 72.222 13.02 5.22 34.52 4.00
3189 3263 4.100084 TGGCCAGCGACTCCATGG 62.100 66.667 0.00 4.97 37.15 3.66
3190 3264 2.321263 ATCTGGCCAGCGACTCCATG 62.321 60.000 28.91 0.73 0.00 3.66
3191 3265 2.037620 GATCTGGCCAGCGACTCCAT 62.038 60.000 28.91 14.31 0.00 3.41
3192 3266 2.685017 ATCTGGCCAGCGACTCCA 60.685 61.111 28.91 9.41 0.00 3.86
3193 3267 2.107953 GATCTGGCCAGCGACTCC 59.892 66.667 28.91 8.78 0.00 3.85
3194 3268 2.107953 GGATCTGGCCAGCGACTC 59.892 66.667 28.91 19.42 0.00 3.36
3195 3269 2.685017 TGGATCTGGCCAGCGACT 60.685 61.111 28.91 12.12 33.10 4.18
3196 3270 2.512515 GTGGATCTGGCCAGCGAC 60.513 66.667 28.91 17.82 38.95 5.19
3197 3271 4.147449 CGTGGATCTGGCCAGCGA 62.147 66.667 28.91 13.04 38.95 4.93
3199 3273 4.864334 CCCGTGGATCTGGCCAGC 62.864 72.222 28.91 14.98 38.95 4.85
3200 3274 4.181010 CCCCGTGGATCTGGCCAG 62.181 72.222 27.87 27.87 38.95 4.85
3203 3277 3.407967 TTCCCCCGTGGATCTGGC 61.408 66.667 0.00 0.00 44.66 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.