Multiple sequence alignment - TraesCS3D01G230200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G230200 chr3D 100.000 4607 0 0 1 4607 313631802 313627196 0.000000e+00 8508.0
1 TraesCS3D01G230200 chr3A 94.741 3803 129 28 1 3762 416143056 416139284 0.000000e+00 5849.0
2 TraesCS3D01G230200 chr3A 91.351 370 25 2 3791 4158 416139212 416138848 2.470000e-137 499.0
3 TraesCS3D01G230200 chr3B 94.473 3094 80 14 695 3754 405945563 405948599 0.000000e+00 4682.0
4 TraesCS3D01G230200 chr3B 88.060 670 38 5 2 671 405937336 405937963 0.000000e+00 756.0
5 TraesCS3D01G230200 chr3B 91.388 418 21 5 3799 4207 405948600 405949011 4.030000e-155 558.0
6 TraesCS3D01G230200 chr4D 98.762 404 5 0 4204 4607 49233564 49233161 0.000000e+00 719.0
7 TraesCS3D01G230200 chr4D 98.015 403 8 0 4205 4607 329002408 329002006 0.000000e+00 701.0
8 TraesCS3D01G230200 chr1D 98.762 404 5 0 4204 4607 472374109 472373706 0.000000e+00 719.0
9 TraesCS3D01G230200 chr6D 98.267 404 7 0 4204 4607 14532074 14531671 0.000000e+00 708.0
10 TraesCS3D01G230200 chr6D 98.020 404 8 0 4204 4607 289607432 289607835 0.000000e+00 702.0
11 TraesCS3D01G230200 chr5D 98.030 406 6 1 4204 4607 424669311 424669716 0.000000e+00 704.0
12 TraesCS3D01G230200 chr5D 98.025 405 8 0 4203 4607 556420060 556420464 0.000000e+00 704.0
13 TraesCS3D01G230200 chr5D 98.015 403 7 1 4205 4607 433335193 433335594 0.000000e+00 699.0
14 TraesCS3D01G230200 chr4B 96.535 404 14 0 4204 4607 611403280 611402877 0.000000e+00 669.0
15 TraesCS3D01G230200 chr1B 87.451 255 22 6 1000 1245 548682290 548682037 7.540000e-73 285.0
16 TraesCS3D01G230200 chr1B 94.737 38 2 0 933 970 548831007 548830970 4.980000e-05 60.2
17 TraesCS3D01G230200 chr6A 96.875 32 1 0 3768 3799 81256063 81256094 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G230200 chr3D 313627196 313631802 4606 True 8508 8508 100.0000 1 4607 1 chr3D.!!$R1 4606
1 TraesCS3D01G230200 chr3A 416138848 416143056 4208 True 3174 5849 93.0460 1 4158 2 chr3A.!!$R1 4157
2 TraesCS3D01G230200 chr3B 405945563 405949011 3448 False 2620 4682 92.9305 695 4207 2 chr3B.!!$F2 3512
3 TraesCS3D01G230200 chr3B 405937336 405937963 627 False 756 756 88.0600 2 671 1 chr3B.!!$F1 669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
996 1015 0.546122 CCGGTCCATCCATCCAAGAA 59.454 55.0 0.00 0.0 35.57 2.52 F
1943 2000 0.109132 CCAACTTGCGCTTCATTCCC 60.109 55.0 9.73 0.0 0.00 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2212 2273 0.336392 TTCCTCAGCTCAGCCCTCTA 59.664 55.0 0.0 0.0 0.00 2.43 R
3664 3725 0.318445 GCCATTGATGCATTCGCTCC 60.318 55.0 0.0 0.0 39.64 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 103 3.944055 AGCATGACAAAGTCGTCTAGT 57.056 42.857 0.00 0.00 36.82 2.57
106 107 4.627467 GCATGACAAAGTCGTCTAGTTCAT 59.373 41.667 0.00 0.00 36.82 2.57
110 111 7.548196 TGACAAAGTCGTCTAGTTCATTTTT 57.452 32.000 0.00 0.00 36.82 1.94
132 135 3.602483 TCCCAGAATTTACCGTGCTTAC 58.398 45.455 0.00 0.00 0.00 2.34
166 169 3.763897 GCCATCCTCACAACAACCTAAAT 59.236 43.478 0.00 0.00 0.00 1.40
167 170 4.220602 GCCATCCTCACAACAACCTAAATT 59.779 41.667 0.00 0.00 0.00 1.82
180 183 5.167845 CAACCTAAATTGCCATAAAACGCT 58.832 37.500 0.00 0.00 0.00 5.07
184 187 5.637387 CCTAAATTGCCATAAAACGCTTGTT 59.363 36.000 0.00 0.00 37.43 2.83
217 220 3.575687 CCCTTCCAGAAAAACTTCAGCAT 59.424 43.478 0.00 0.00 0.00 3.79
238 241 8.605746 CAGCATAATAACATTTCCCAAAACATG 58.394 33.333 0.00 0.00 0.00 3.21
239 242 8.320617 AGCATAATAACATTTCCCAAAACATGT 58.679 29.630 0.00 0.00 0.00 3.21
298 302 4.331717 AGTCGTACACAACAAAAACAGAGG 59.668 41.667 0.00 0.00 0.00 3.69
299 303 3.623960 TCGTACACAACAAAAACAGAGGG 59.376 43.478 0.00 0.00 0.00 4.30
371 375 0.889306 ACCTTTCTTCGTCTCTCGGG 59.111 55.000 0.00 0.00 40.32 5.14
474 478 1.372683 GACTCTTCACTGCAGCCCA 59.627 57.895 15.27 0.00 0.00 5.36
528 532 0.916809 ACCCCTATTTCCCGGAACTG 59.083 55.000 0.73 0.00 0.00 3.16
578 582 2.541588 GGTGTATCCGTGCATGCAATTC 60.542 50.000 24.58 11.05 0.00 2.17
645 649 3.242641 CCGCATTGATCACAGAATGACAG 60.243 47.826 8.92 0.81 41.24 3.51
665 669 1.558294 GGAGGGTAGGACGGTCATTTT 59.442 52.381 10.76 0.00 0.00 1.82
862 880 2.106131 CACGGATCGATCGCCCAA 59.894 61.111 18.81 2.32 0.00 4.12
926 944 1.607071 CAACCACCATCATCCCCGA 59.393 57.895 0.00 0.00 0.00 5.14
996 1015 0.546122 CCGGTCCATCCATCCAAGAA 59.454 55.000 0.00 0.00 35.57 2.52
1624 1667 0.809241 GGAGATCAAGGTGAGCGCTG 60.809 60.000 18.48 0.00 37.94 5.18
1769 1812 2.203922 TACAGGCTGGGAGGTGCA 60.204 61.111 20.34 0.00 0.00 4.57
1770 1813 2.293318 TACAGGCTGGGAGGTGCAG 61.293 63.158 20.34 0.00 0.00 4.41
1771 1814 4.421515 CAGGCTGGGAGGTGCAGG 62.422 72.222 6.61 0.00 0.00 4.85
1772 1815 4.990910 AGGCTGGGAGGTGCAGGT 62.991 66.667 0.00 0.00 0.00 4.00
1773 1816 4.729918 GGCTGGGAGGTGCAGGTG 62.730 72.222 0.00 0.00 0.00 4.00
1874 1919 2.160813 CACCCCGTGTCTTTAATTTCCG 59.839 50.000 0.00 0.00 0.00 4.30
1943 2000 0.109132 CCAACTTGCGCTTCATTCCC 60.109 55.000 9.73 0.00 0.00 3.97
1964 2021 4.692155 CCCTTTTCATTGACAAATTCCTGC 59.308 41.667 0.00 0.00 0.00 4.85
2064 2121 0.609131 AGGGTGGCATTTTCGAGGTG 60.609 55.000 0.00 0.00 0.00 4.00
2117 2174 0.250467 CTGGGTGTGACTTGTGGAGG 60.250 60.000 0.00 0.00 0.00 4.30
2172 2233 5.953183 TCCATGCAACAATCTACACAATTC 58.047 37.500 0.00 0.00 0.00 2.17
2190 2251 7.651704 ACACAATTCTTTTCGTCCTAATTTTGG 59.348 33.333 0.00 0.00 0.00 3.28
2195 2256 9.607988 ATTCTTTTCGTCCTAATTTTGGTTTTT 57.392 25.926 0.00 0.00 0.00 1.94
2197 2258 6.591313 TTTCGTCCTAATTTTGGTTTTTGC 57.409 33.333 0.00 0.00 0.00 3.68
2209 2270 2.027745 TGGTTTTTGCTGTTGCTGGAAA 60.028 40.909 0.00 0.00 40.48 3.13
2212 2273 4.996758 GGTTTTTGCTGTTGCTGGAAATAT 59.003 37.500 0.00 0.00 40.48 1.28
2247 2308 2.227388 GAGGAAACACTACGGACTCGAA 59.773 50.000 0.00 0.00 40.11 3.71
2748 2809 2.014554 CACCACGTTCGAGGACACG 61.015 63.158 14.70 5.86 42.29 4.49
2805 2866 1.144936 GGGCATCTACGAGCAGCTT 59.855 57.895 0.00 0.00 0.00 3.74
3204 3265 1.218047 GACGTACATCCTGCAGCCA 59.782 57.895 8.66 0.00 0.00 4.75
3608 3669 1.941325 CTGGTATCCGAAGCCTGAAC 58.059 55.000 0.00 0.00 0.00 3.18
3643 3704 6.428159 TCAAGCAGGTCTACATTCTTTTCTTC 59.572 38.462 0.00 0.00 0.00 2.87
3662 3723 0.881118 CGGGTTCTTTGATGTGTGGG 59.119 55.000 0.00 0.00 0.00 4.61
3663 3724 1.817740 CGGGTTCTTTGATGTGTGGGT 60.818 52.381 0.00 0.00 0.00 4.51
3664 3725 1.613437 GGGTTCTTTGATGTGTGGGTG 59.387 52.381 0.00 0.00 0.00 4.61
3665 3726 1.613437 GGTTCTTTGATGTGTGGGTGG 59.387 52.381 0.00 0.00 0.00 4.61
3762 3823 3.467776 GAGTACGTACTCCCTCCGT 57.532 57.895 35.45 11.53 45.33 4.69
3763 3824 1.012841 GAGTACGTACTCCCTCCGTG 58.987 60.000 35.45 0.00 45.33 4.94
3764 3825 0.615331 AGTACGTACTCCCTCCGTGA 59.385 55.000 22.45 0.00 36.12 4.35
3765 3826 1.003580 AGTACGTACTCCCTCCGTGAA 59.996 52.381 22.45 0.00 36.12 3.18
3766 3827 1.399791 GTACGTACTCCCTCCGTGAAG 59.600 57.143 18.47 0.00 36.12 3.02
3770 3831 2.415625 CGTACTCCCTCCGTGAAGAAAG 60.416 54.545 0.00 0.00 0.00 2.62
3771 3832 0.977395 ACTCCCTCCGTGAAGAAAGG 59.023 55.000 0.00 0.00 0.00 3.11
3772 3833 0.391793 CTCCCTCCGTGAAGAAAGGC 60.392 60.000 0.00 0.00 0.00 4.35
3773 3834 0.836400 TCCCTCCGTGAAGAAAGGCT 60.836 55.000 0.00 0.00 0.00 4.58
3774 3835 0.391793 CCCTCCGTGAAGAAAGGCTC 60.392 60.000 0.00 0.00 0.00 4.70
3775 3836 0.610687 CCTCCGTGAAGAAAGGCTCT 59.389 55.000 0.00 0.00 35.13 4.09
3777 3838 2.233922 CCTCCGTGAAGAAAGGCTCTTA 59.766 50.000 0.00 0.00 44.82 2.10
3778 3839 3.118592 CCTCCGTGAAGAAAGGCTCTTAT 60.119 47.826 0.00 0.00 44.82 1.73
3779 3840 4.099573 CCTCCGTGAAGAAAGGCTCTTATA 59.900 45.833 0.00 0.00 44.82 0.98
3783 3844 6.761714 TCCGTGAAGAAAGGCTCTTATATTTC 59.238 38.462 0.00 0.00 44.82 2.17
3784 3845 6.763610 CCGTGAAGAAAGGCTCTTATATTTCT 59.236 38.462 0.00 0.00 44.82 2.52
3789 3850 7.778470 AGAAAGGCTCTTATATTTCTTCACG 57.222 36.000 0.00 0.00 38.51 4.35
3794 3898 5.221461 GGCTCTTATATTTCTTCACGGAGGA 60.221 44.000 0.00 0.00 0.00 3.71
3804 3908 3.576982 TCTTCACGGAGGAAGTACATTGT 59.423 43.478 11.75 0.00 43.72 2.71
3813 3917 6.513884 CGGAGGAAGTACATTGTAAGCGTATA 60.514 42.308 0.00 0.00 0.00 1.47
3822 3926 9.044724 GTACATTGTAAGCGTATACGTATAGTG 57.955 37.037 25.04 16.76 42.22 2.74
3901 4005 2.481795 GCCGCTGAATAATGCAATGGTT 60.482 45.455 0.00 0.00 0.00 3.67
4069 4180 7.068839 CACCTCTGTATTGTATAGGTCACTTCT 59.931 40.741 0.00 0.00 38.51 2.85
4080 4191 4.982241 AGGTCACTTCTCAATTCCTTCA 57.018 40.909 0.00 0.00 0.00 3.02
4105 4216 1.360192 GGCCATACGCTCCAAATGC 59.640 57.895 0.00 0.00 37.74 3.56
4167 4278 9.833179 ATATCTAGTCAGTAGTAGGAGTACTCT 57.167 37.037 21.88 10.81 40.23 3.24
4203 4316 2.159014 TGTCCGCAAATATAACGGCTCT 60.159 45.455 6.20 0.00 46.49 4.09
4207 4320 4.396790 TCCGCAAATATAACGGCTCTTTTT 59.603 37.500 6.20 0.00 46.49 1.94
4230 4343 6.976636 TTTTTGAAACGAAGGCAAAAGATT 57.023 29.167 0.00 0.00 41.02 2.40
4231 4344 6.976636 TTTTGAAACGAAGGCAAAAGATTT 57.023 29.167 0.00 0.00 36.80 2.17
4232 4345 5.964887 TTGAAACGAAGGCAAAAGATTTG 57.035 34.783 0.00 0.00 0.00 2.32
4233 4346 3.801594 TGAAACGAAGGCAAAAGATTTGC 59.198 39.130 17.18 17.18 44.22 3.68
4245 4358 7.656707 GCAAAAGATTTGCCTCTTCAATTAA 57.343 32.000 15.12 0.00 39.38 1.40
4246 4359 8.086851 GCAAAAGATTTGCCTCTTCAATTAAA 57.913 30.769 15.12 0.00 39.38 1.52
4247 4360 8.724229 GCAAAAGATTTGCCTCTTCAATTAAAT 58.276 29.630 15.12 0.00 39.38 1.40
4252 4365 8.699130 AGATTTGCCTCTTCAATTAAATAAGGG 58.301 33.333 0.00 0.00 0.00 3.95
4253 4366 8.608185 ATTTGCCTCTTCAATTAAATAAGGGA 57.392 30.769 0.00 0.00 0.00 4.20
4254 4367 7.645058 TTGCCTCTTCAATTAAATAAGGGAG 57.355 36.000 0.00 0.00 0.00 4.30
4255 4368 6.969043 TGCCTCTTCAATTAAATAAGGGAGA 58.031 36.000 0.00 0.00 0.00 3.71
4256 4369 7.056635 TGCCTCTTCAATTAAATAAGGGAGAG 58.943 38.462 0.00 0.00 0.00 3.20
4257 4370 7.092444 TGCCTCTTCAATTAAATAAGGGAGAGA 60.092 37.037 11.64 0.00 0.00 3.10
4258 4371 7.775561 GCCTCTTCAATTAAATAAGGGAGAGAA 59.224 37.037 11.64 0.00 0.00 2.87
4259 4372 9.859152 CCTCTTCAATTAAATAAGGGAGAGAAT 57.141 33.333 11.64 0.00 0.00 2.40
4293 4406 6.683090 TTTTTACAACGCACTCATAAATGC 57.317 33.333 0.00 0.00 38.52 3.56
4299 4412 1.762419 GCACTCATAAATGCGGCATG 58.238 50.000 17.43 5.53 30.97 4.06
4300 4413 1.601162 GCACTCATAAATGCGGCATGG 60.601 52.381 17.43 7.01 30.97 3.66
4301 4414 0.670162 ACTCATAAATGCGGCATGGC 59.330 50.000 17.43 9.69 0.00 4.40
4308 4421 4.335214 TGCGGCATGGCAATTACT 57.665 50.000 20.37 0.00 40.59 2.24
4309 4422 2.105984 TGCGGCATGGCAATTACTC 58.894 52.632 20.37 0.00 40.59 2.59
4310 4423 1.009675 GCGGCATGGCAATTACTCG 60.010 57.895 20.37 0.97 0.00 4.18
4311 4424 1.648720 CGGCATGGCAATTACTCGG 59.351 57.895 20.37 0.00 0.00 4.63
4312 4425 0.813610 CGGCATGGCAATTACTCGGA 60.814 55.000 20.37 0.00 0.00 4.55
4313 4426 0.663153 GGCATGGCAATTACTCGGAC 59.337 55.000 15.47 0.00 0.00 4.79
4314 4427 1.378531 GCATGGCAATTACTCGGACA 58.621 50.000 0.00 0.00 0.00 4.02
4315 4428 1.064060 GCATGGCAATTACTCGGACAC 59.936 52.381 0.00 0.00 0.00 3.67
4316 4429 2.632377 CATGGCAATTACTCGGACACT 58.368 47.619 0.00 0.00 0.00 3.55
4317 4430 3.792401 CATGGCAATTACTCGGACACTA 58.208 45.455 0.00 0.00 0.00 2.74
4318 4431 4.380531 CATGGCAATTACTCGGACACTAT 58.619 43.478 0.00 0.00 0.00 2.12
4319 4432 4.481368 TGGCAATTACTCGGACACTATT 57.519 40.909 0.00 0.00 0.00 1.73
4320 4433 5.601583 TGGCAATTACTCGGACACTATTA 57.398 39.130 0.00 0.00 0.00 0.98
4321 4434 6.169557 TGGCAATTACTCGGACACTATTAT 57.830 37.500 0.00 0.00 0.00 1.28
4322 4435 5.989168 TGGCAATTACTCGGACACTATTATG 59.011 40.000 0.00 0.00 0.00 1.90
4323 4436 5.989777 GGCAATTACTCGGACACTATTATGT 59.010 40.000 0.00 0.00 34.78 2.29
4324 4437 6.482308 GGCAATTACTCGGACACTATTATGTT 59.518 38.462 0.00 0.00 31.24 2.71
4325 4438 7.307219 GGCAATTACTCGGACACTATTATGTTC 60.307 40.741 0.00 0.00 31.24 3.18
4326 4439 7.307219 GCAATTACTCGGACACTATTATGTTCC 60.307 40.741 0.00 0.00 31.24 3.62
4327 4440 4.667519 ACTCGGACACTATTATGTTCCC 57.332 45.455 0.00 0.00 31.24 3.97
4328 4441 4.287552 ACTCGGACACTATTATGTTCCCT 58.712 43.478 0.00 0.00 31.24 4.20
4329 4442 5.452255 ACTCGGACACTATTATGTTCCCTA 58.548 41.667 0.00 0.00 31.24 3.53
4330 4443 5.535406 ACTCGGACACTATTATGTTCCCTAG 59.465 44.000 0.00 0.00 31.24 3.02
4331 4444 5.452255 TCGGACACTATTATGTTCCCTAGT 58.548 41.667 0.00 0.00 31.24 2.57
4332 4445 5.895534 TCGGACACTATTATGTTCCCTAGTT 59.104 40.000 0.00 0.00 31.24 2.24
4333 4446 6.381994 TCGGACACTATTATGTTCCCTAGTTT 59.618 38.462 0.00 0.00 31.24 2.66
4334 4447 6.700520 CGGACACTATTATGTTCCCTAGTTTC 59.299 42.308 0.00 0.00 31.24 2.78
4335 4448 7.417570 CGGACACTATTATGTTCCCTAGTTTCT 60.418 40.741 0.00 0.00 31.24 2.52
4336 4449 8.265764 GGACACTATTATGTTCCCTAGTTTCTT 58.734 37.037 0.00 0.00 31.24 2.52
4337 4450 9.668497 GACACTATTATGTTCCCTAGTTTCTTT 57.332 33.333 0.00 0.00 31.24 2.52
4338 4451 9.449719 ACACTATTATGTTCCCTAGTTTCTTTG 57.550 33.333 0.00 0.00 0.00 2.77
4339 4452 8.398665 CACTATTATGTTCCCTAGTTTCTTTGC 58.601 37.037 0.00 0.00 0.00 3.68
4340 4453 5.873179 TTATGTTCCCTAGTTTCTTTGCG 57.127 39.130 0.00 0.00 0.00 4.85
4341 4454 1.877443 TGTTCCCTAGTTTCTTTGCGC 59.123 47.619 0.00 0.00 0.00 6.09
4342 4455 1.199327 GTTCCCTAGTTTCTTTGCGCC 59.801 52.381 4.18 0.00 0.00 6.53
4343 4456 0.672401 TCCCTAGTTTCTTTGCGCCG 60.672 55.000 4.18 0.00 0.00 6.46
4344 4457 1.644786 CCCTAGTTTCTTTGCGCCGG 61.645 60.000 4.18 0.00 0.00 6.13
4345 4458 1.134694 CTAGTTTCTTTGCGCCGGC 59.865 57.895 19.07 19.07 40.52 6.13
4346 4459 2.563086 CTAGTTTCTTTGCGCCGGCG 62.563 60.000 43.13 43.13 44.10 6.46
4357 4470 4.910585 GCCGGCGGTCACCCATAG 62.911 72.222 28.82 0.00 0.00 2.23
4358 4471 3.467226 CCGGCGGTCACCCATAGT 61.467 66.667 19.97 0.00 0.00 2.12
4359 4472 2.582436 CGGCGGTCACCCATAGTT 59.418 61.111 0.00 0.00 0.00 2.24
4360 4473 1.078708 CGGCGGTCACCCATAGTTT 60.079 57.895 0.00 0.00 0.00 2.66
4361 4474 0.675522 CGGCGGTCACCCATAGTTTT 60.676 55.000 0.00 0.00 0.00 2.43
4362 4475 0.808755 GGCGGTCACCCATAGTTTTG 59.191 55.000 0.00 0.00 0.00 2.44
4363 4476 0.170339 GCGGTCACCCATAGTTTTGC 59.830 55.000 0.00 0.00 0.00 3.68
4364 4477 1.529226 CGGTCACCCATAGTTTTGCA 58.471 50.000 0.00 0.00 0.00 4.08
4365 4478 2.091541 CGGTCACCCATAGTTTTGCAT 58.908 47.619 0.00 0.00 0.00 3.96
4366 4479 2.097466 CGGTCACCCATAGTTTTGCATC 59.903 50.000 0.00 0.00 0.00 3.91
4367 4480 3.356290 GGTCACCCATAGTTTTGCATCT 58.644 45.455 0.00 0.00 0.00 2.90
4368 4481 3.763897 GGTCACCCATAGTTTTGCATCTT 59.236 43.478 0.00 0.00 0.00 2.40
4369 4482 4.142381 GGTCACCCATAGTTTTGCATCTTC 60.142 45.833 0.00 0.00 0.00 2.87
4370 4483 4.702131 GTCACCCATAGTTTTGCATCTTCT 59.298 41.667 0.00 0.00 0.00 2.85
4371 4484 5.880332 GTCACCCATAGTTTTGCATCTTCTA 59.120 40.000 0.00 0.00 0.00 2.10
4372 4485 6.374333 GTCACCCATAGTTTTGCATCTTCTAA 59.626 38.462 0.00 0.00 0.00 2.10
4373 4486 6.945435 TCACCCATAGTTTTGCATCTTCTAAA 59.055 34.615 0.00 0.00 0.00 1.85
4374 4487 7.450014 TCACCCATAGTTTTGCATCTTCTAAAA 59.550 33.333 0.00 0.00 0.00 1.52
4375 4488 8.253113 CACCCATAGTTTTGCATCTTCTAAAAT 58.747 33.333 0.00 0.00 0.00 1.82
4376 4489 8.253113 ACCCATAGTTTTGCATCTTCTAAAATG 58.747 33.333 0.00 0.00 0.00 2.32
4377 4490 8.253113 CCCATAGTTTTGCATCTTCTAAAATGT 58.747 33.333 0.00 0.00 0.00 2.71
4378 4491 9.643693 CCATAGTTTTGCATCTTCTAAAATGTT 57.356 29.630 0.00 0.00 0.00 2.71
4380 4493 7.951530 AGTTTTGCATCTTCTAAAATGTTGG 57.048 32.000 0.00 0.00 0.00 3.77
4381 4494 7.500141 AGTTTTGCATCTTCTAAAATGTTGGT 58.500 30.769 0.00 0.00 0.00 3.67
4382 4495 8.637986 AGTTTTGCATCTTCTAAAATGTTGGTA 58.362 29.630 0.00 0.00 0.00 3.25
4383 4496 9.255304 GTTTTGCATCTTCTAAAATGTTGGTAA 57.745 29.630 0.00 0.00 0.00 2.85
4384 4497 9.474920 TTTTGCATCTTCTAAAATGTTGGTAAG 57.525 29.630 0.00 0.00 0.00 2.34
4385 4498 7.994425 TGCATCTTCTAAAATGTTGGTAAGA 57.006 32.000 0.00 0.00 0.00 2.10
4386 4499 8.402798 TGCATCTTCTAAAATGTTGGTAAGAA 57.597 30.769 0.00 0.00 0.00 2.52
4387 4500 8.514594 TGCATCTTCTAAAATGTTGGTAAGAAG 58.485 33.333 0.00 0.00 40.69 2.85
4392 4505 9.760660 CTTCTAAAATGTTGGTAAGAAGAATCG 57.239 33.333 4.29 0.00 41.46 3.34
4393 4506 8.842358 TCTAAAATGTTGGTAAGAAGAATCGT 57.158 30.769 0.00 0.00 0.00 3.73
4394 4507 8.932791 TCTAAAATGTTGGTAAGAAGAATCGTC 58.067 33.333 0.00 0.00 0.00 4.20
4395 4508 5.779806 AATGTTGGTAAGAAGAATCGTCG 57.220 39.130 0.00 0.00 0.00 5.12
4396 4509 3.581755 TGTTGGTAAGAAGAATCGTCGG 58.418 45.455 0.00 0.00 0.00 4.79
4397 4510 2.288961 TGGTAAGAAGAATCGTCGGC 57.711 50.000 0.00 0.00 0.00 5.54
4398 4511 1.197910 GGTAAGAAGAATCGTCGGCG 58.802 55.000 1.15 1.15 39.92 6.46
4399 4512 1.197910 GTAAGAAGAATCGTCGGCGG 58.802 55.000 10.62 0.00 38.89 6.13
4400 4513 0.813184 TAAGAAGAATCGTCGGCGGT 59.187 50.000 10.62 0.00 38.89 5.68
4401 4514 0.736325 AAGAAGAATCGTCGGCGGTG 60.736 55.000 10.62 0.00 38.89 4.94
4402 4515 2.799540 GAAGAATCGTCGGCGGTGC 61.800 63.158 10.62 0.00 38.89 5.01
4438 4551 2.737376 GCGGGCGTTTCTCTCGTT 60.737 61.111 0.00 0.00 0.00 3.85
4439 4552 2.727684 GCGGGCGTTTCTCTCGTTC 61.728 63.158 0.00 0.00 0.00 3.95
4440 4553 2.092882 CGGGCGTTTCTCTCGTTCC 61.093 63.158 0.00 0.00 0.00 3.62
4441 4554 1.005394 GGGCGTTTCTCTCGTTCCA 60.005 57.895 0.00 0.00 0.00 3.53
4442 4555 0.601841 GGGCGTTTCTCTCGTTCCAA 60.602 55.000 0.00 0.00 0.00 3.53
4443 4556 1.223187 GGCGTTTCTCTCGTTCCAAA 58.777 50.000 0.00 0.00 0.00 3.28
4444 4557 1.804748 GGCGTTTCTCTCGTTCCAAAT 59.195 47.619 0.00 0.00 0.00 2.32
4445 4558 2.225727 GGCGTTTCTCTCGTTCCAAATT 59.774 45.455 0.00 0.00 0.00 1.82
4446 4559 3.434299 GGCGTTTCTCTCGTTCCAAATTA 59.566 43.478 0.00 0.00 0.00 1.40
4447 4560 4.392216 GCGTTTCTCTCGTTCCAAATTAC 58.608 43.478 0.00 0.00 0.00 1.89
4448 4561 4.668431 GCGTTTCTCTCGTTCCAAATTACC 60.668 45.833 0.00 0.00 0.00 2.85
4449 4562 4.142966 CGTTTCTCTCGTTCCAAATTACCC 60.143 45.833 0.00 0.00 0.00 3.69
4450 4563 4.627284 TTCTCTCGTTCCAAATTACCCA 57.373 40.909 0.00 0.00 0.00 4.51
4451 4564 4.627284 TCTCTCGTTCCAAATTACCCAA 57.373 40.909 0.00 0.00 0.00 4.12
4452 4565 4.575885 TCTCTCGTTCCAAATTACCCAAG 58.424 43.478 0.00 0.00 0.00 3.61
4453 4566 4.285003 TCTCTCGTTCCAAATTACCCAAGA 59.715 41.667 0.00 0.00 0.00 3.02
4454 4567 4.975631 TCTCGTTCCAAATTACCCAAGAA 58.024 39.130 0.00 0.00 0.00 2.52
4455 4568 5.378332 TCTCGTTCCAAATTACCCAAGAAA 58.622 37.500 0.00 0.00 0.00 2.52
4456 4569 5.239963 TCTCGTTCCAAATTACCCAAGAAAC 59.760 40.000 0.00 0.00 0.00 2.78
4457 4570 4.023878 TCGTTCCAAATTACCCAAGAAACG 60.024 41.667 0.00 0.00 0.00 3.60
4458 4571 4.023878 CGTTCCAAATTACCCAAGAAACGA 60.024 41.667 0.00 0.00 0.00 3.85
4459 4572 5.458015 GTTCCAAATTACCCAAGAAACGAG 58.542 41.667 0.00 0.00 0.00 4.18
4460 4573 3.504520 TCCAAATTACCCAAGAAACGAGC 59.495 43.478 0.00 0.00 0.00 5.03
4461 4574 3.254657 CCAAATTACCCAAGAAACGAGCA 59.745 43.478 0.00 0.00 0.00 4.26
4462 4575 4.082245 CCAAATTACCCAAGAAACGAGCAT 60.082 41.667 0.00 0.00 0.00 3.79
4463 4576 4.701956 AATTACCCAAGAAACGAGCATG 57.298 40.909 0.00 0.00 0.00 4.06
4464 4577 2.107950 TACCCAAGAAACGAGCATGG 57.892 50.000 0.00 0.00 0.00 3.66
4465 4578 0.110486 ACCCAAGAAACGAGCATGGT 59.890 50.000 0.00 0.00 0.00 3.55
4466 4579 0.523072 CCCAAGAAACGAGCATGGTG 59.477 55.000 0.00 0.00 0.00 4.17
4467 4580 1.522668 CCAAGAAACGAGCATGGTGA 58.477 50.000 0.00 0.00 0.00 4.02
4468 4581 1.466167 CCAAGAAACGAGCATGGTGAG 59.534 52.381 0.00 0.00 0.00 3.51
4469 4582 1.466167 CAAGAAACGAGCATGGTGAGG 59.534 52.381 0.00 0.00 0.00 3.86
4470 4583 0.036010 AGAAACGAGCATGGTGAGGG 60.036 55.000 0.00 0.00 0.00 4.30
4471 4584 0.036388 GAAACGAGCATGGTGAGGGA 60.036 55.000 0.00 0.00 0.00 4.20
4472 4585 0.036010 AAACGAGCATGGTGAGGGAG 60.036 55.000 0.00 0.00 0.00 4.30
4473 4586 1.903877 AACGAGCATGGTGAGGGAGG 61.904 60.000 0.00 0.00 0.00 4.30
4474 4587 2.191641 GAGCATGGTGAGGGAGGC 59.808 66.667 0.00 0.00 0.00 4.70
4475 4588 3.412624 GAGCATGGTGAGGGAGGCC 62.413 68.421 0.00 0.00 0.00 5.19
4476 4589 3.731728 GCATGGTGAGGGAGGCCA 61.732 66.667 5.01 0.00 36.64 5.36
4477 4590 3.065787 GCATGGTGAGGGAGGCCAT 62.066 63.158 5.01 0.00 43.14 4.40
4478 4591 1.616921 CATGGTGAGGGAGGCCATT 59.383 57.895 5.01 0.00 40.68 3.16
4479 4592 0.754217 CATGGTGAGGGAGGCCATTG 60.754 60.000 5.01 0.00 40.68 2.82
4480 4593 2.440980 GGTGAGGGAGGCCATTGC 60.441 66.667 5.01 0.00 0.00 3.56
4481 4594 2.825836 GTGAGGGAGGCCATTGCG 60.826 66.667 5.01 0.00 38.85 4.85
4482 4595 3.329889 TGAGGGAGGCCATTGCGT 61.330 61.111 5.01 0.00 38.85 5.24
4487 4600 2.892425 GAGGCCATTGCGTCTCGG 60.892 66.667 5.01 0.00 46.32 4.63
4488 4601 3.665675 GAGGCCATTGCGTCTCGGT 62.666 63.158 5.01 0.00 46.32 4.69
4489 4602 2.746277 GGCCATTGCGTCTCGGTT 60.746 61.111 0.00 0.00 38.85 4.44
4490 4603 1.448893 GGCCATTGCGTCTCGGTTA 60.449 57.895 0.00 0.00 38.85 2.85
4491 4604 1.429148 GGCCATTGCGTCTCGGTTAG 61.429 60.000 0.00 0.00 38.85 2.34
4492 4605 1.429148 GCCATTGCGTCTCGGTTAGG 61.429 60.000 0.00 0.00 0.00 2.69
4493 4606 0.174845 CCATTGCGTCTCGGTTAGGA 59.825 55.000 0.00 0.00 0.00 2.94
4494 4607 1.404986 CCATTGCGTCTCGGTTAGGAA 60.405 52.381 0.00 0.00 0.00 3.36
4495 4608 2.550978 CATTGCGTCTCGGTTAGGAAT 58.449 47.619 0.00 0.00 0.00 3.01
4496 4609 3.491964 CCATTGCGTCTCGGTTAGGAATA 60.492 47.826 0.00 0.00 0.00 1.75
4497 4610 4.307432 CATTGCGTCTCGGTTAGGAATAT 58.693 43.478 0.00 0.00 0.00 1.28
4498 4611 4.395959 TTGCGTCTCGGTTAGGAATATT 57.604 40.909 0.00 0.00 0.00 1.28
4499 4612 5.518848 TTGCGTCTCGGTTAGGAATATTA 57.481 39.130 0.00 0.00 0.00 0.98
4500 4613 5.717078 TGCGTCTCGGTTAGGAATATTAT 57.283 39.130 0.00 0.00 0.00 1.28
4501 4614 6.092955 TGCGTCTCGGTTAGGAATATTATT 57.907 37.500 0.00 0.00 0.00 1.40
4502 4615 5.924254 TGCGTCTCGGTTAGGAATATTATTG 59.076 40.000 0.00 0.00 0.00 1.90
4503 4616 5.924825 GCGTCTCGGTTAGGAATATTATTGT 59.075 40.000 0.00 0.00 0.00 2.71
4504 4617 6.423001 GCGTCTCGGTTAGGAATATTATTGTT 59.577 38.462 0.00 0.00 0.00 2.83
4505 4618 7.568861 GCGTCTCGGTTAGGAATATTATTGTTG 60.569 40.741 0.00 0.00 0.00 3.33
4506 4619 7.095774 CGTCTCGGTTAGGAATATTATTGTTGG 60.096 40.741 0.00 0.00 0.00 3.77
4507 4620 7.713942 GTCTCGGTTAGGAATATTATTGTTGGT 59.286 37.037 0.00 0.00 0.00 3.67
4508 4621 8.269317 TCTCGGTTAGGAATATTATTGTTGGTT 58.731 33.333 0.00 0.00 0.00 3.67
4509 4622 8.441312 TCGGTTAGGAATATTATTGTTGGTTC 57.559 34.615 0.00 0.00 0.00 3.62
4510 4623 8.269317 TCGGTTAGGAATATTATTGTTGGTTCT 58.731 33.333 0.00 0.00 0.00 3.01
4511 4624 8.899771 CGGTTAGGAATATTATTGTTGGTTCTT 58.100 33.333 0.00 0.00 0.00 2.52
4528 4641 2.885861 TTTTTGCCACCACGCGTT 59.114 50.000 10.22 0.00 0.00 4.84
4529 4642 1.517257 TTTTTGCCACCACGCGTTG 60.517 52.632 10.22 9.54 0.00 4.10
4530 4643 1.934220 TTTTTGCCACCACGCGTTGA 61.934 50.000 18.13 0.00 0.00 3.18
4531 4644 2.600122 TTTTGCCACCACGCGTTGAC 62.600 55.000 18.13 3.58 0.00 3.18
4535 4648 3.266376 CACCACGCGTTGACGGTT 61.266 61.111 18.13 0.29 40.23 4.44
4536 4649 2.512057 ACCACGCGTTGACGGTTT 60.512 55.556 18.13 0.00 40.23 3.27
4537 4650 2.247267 CCACGCGTTGACGGTTTC 59.753 61.111 10.22 0.00 40.23 2.78
4538 4651 2.526993 CCACGCGTTGACGGTTTCA 61.527 57.895 10.22 0.00 40.23 2.69
4539 4652 1.567537 CACGCGTTGACGGTTTCAT 59.432 52.632 10.22 0.00 40.23 2.57
4540 4653 0.450482 CACGCGTTGACGGTTTCATC 60.450 55.000 10.22 0.00 40.23 2.92
4541 4654 1.131826 CGCGTTGACGGTTTCATCC 59.868 57.895 0.00 0.00 40.23 3.51
4549 4662 4.713946 GGTTTCATCCGAGTGCCA 57.286 55.556 0.00 0.00 0.00 4.92
4550 4663 2.171635 GGTTTCATCCGAGTGCCAC 58.828 57.895 0.00 0.00 0.00 5.01
4551 4664 0.321653 GGTTTCATCCGAGTGCCACT 60.322 55.000 0.00 0.00 0.00 4.00
4552 4665 1.079503 GTTTCATCCGAGTGCCACTC 58.920 55.000 14.98 14.98 41.71 3.51
4559 4672 2.262915 GAGTGCCACTCGGAGGTG 59.737 66.667 9.45 5.42 35.28 4.00
4560 4673 2.524394 AGTGCCACTCGGAGGTGT 60.524 61.111 10.23 0.00 35.63 4.16
4561 4674 2.048127 GTGCCACTCGGAGGTGTC 60.048 66.667 10.23 0.00 35.63 3.67
4562 4675 3.311110 TGCCACTCGGAGGTGTCC 61.311 66.667 10.23 0.70 39.88 4.02
4563 4676 3.311110 GCCACTCGGAGGTGTCCA 61.311 66.667 10.23 0.00 44.18 4.02
4564 4677 2.660064 GCCACTCGGAGGTGTCCAT 61.660 63.158 10.23 0.00 44.18 3.41
4565 4678 1.219124 CCACTCGGAGGTGTCCATG 59.781 63.158 10.23 0.00 44.18 3.66
4566 4679 1.544825 CCACTCGGAGGTGTCCATGT 61.545 60.000 10.23 0.00 44.18 3.21
4567 4680 0.390340 CACTCGGAGGTGTCCATGTG 60.390 60.000 10.23 0.00 44.18 3.21
4568 4681 0.832135 ACTCGGAGGTGTCCATGTGT 60.832 55.000 10.23 0.00 44.18 3.72
4569 4682 0.390340 CTCGGAGGTGTCCATGTGTG 60.390 60.000 0.00 0.00 44.18 3.82
4570 4683 2.034879 CGGAGGTGTCCATGTGTGC 61.035 63.158 0.00 0.00 44.18 4.57
4571 4684 1.073025 GGAGGTGTCCATGTGTGCA 59.927 57.895 0.00 0.00 43.31 4.57
4572 4685 0.537143 GGAGGTGTCCATGTGTGCAA 60.537 55.000 0.00 0.00 43.31 4.08
4573 4686 0.877071 GAGGTGTCCATGTGTGCAAG 59.123 55.000 0.00 0.00 0.00 4.01
4574 4687 0.183492 AGGTGTCCATGTGTGCAAGT 59.817 50.000 0.00 0.00 0.00 3.16
4575 4688 0.593128 GGTGTCCATGTGTGCAAGTC 59.407 55.000 0.00 0.00 0.00 3.01
4576 4689 0.593128 GTGTCCATGTGTGCAAGTCC 59.407 55.000 0.00 0.00 0.00 3.85
4577 4690 0.182299 TGTCCATGTGTGCAAGTCCA 59.818 50.000 0.00 0.00 0.00 4.02
4578 4691 1.317613 GTCCATGTGTGCAAGTCCAA 58.682 50.000 0.00 0.00 0.00 3.53
4579 4692 1.267806 GTCCATGTGTGCAAGTCCAAG 59.732 52.381 0.00 0.00 0.00 3.61
4580 4693 0.038892 CCATGTGTGCAAGTCCAAGC 60.039 55.000 0.00 0.00 0.00 4.01
4581 4694 0.956633 CATGTGTGCAAGTCCAAGCT 59.043 50.000 0.00 0.00 0.00 3.74
4582 4695 0.956633 ATGTGTGCAAGTCCAAGCTG 59.043 50.000 0.00 0.00 0.00 4.24
4583 4696 1.008079 GTGTGCAAGTCCAAGCTGC 60.008 57.895 0.00 0.00 0.00 5.25
4584 4697 1.152902 TGTGCAAGTCCAAGCTGCT 60.153 52.632 0.00 0.00 0.00 4.24
4585 4698 1.168407 TGTGCAAGTCCAAGCTGCTC 61.168 55.000 1.00 0.00 0.00 4.26
4586 4699 0.888285 GTGCAAGTCCAAGCTGCTCT 60.888 55.000 1.00 0.00 0.00 4.09
4587 4700 0.686789 TGCAAGTCCAAGCTGCTCTA 59.313 50.000 1.00 0.00 0.00 2.43
4588 4701 1.280133 TGCAAGTCCAAGCTGCTCTAT 59.720 47.619 1.00 0.00 0.00 1.98
4589 4702 1.669779 GCAAGTCCAAGCTGCTCTATG 59.330 52.381 1.00 0.00 0.00 2.23
4590 4703 2.679059 GCAAGTCCAAGCTGCTCTATGA 60.679 50.000 1.00 0.00 0.00 2.15
4591 4704 3.806380 CAAGTCCAAGCTGCTCTATGAT 58.194 45.455 1.00 0.00 0.00 2.45
4592 4705 3.749665 AGTCCAAGCTGCTCTATGATC 57.250 47.619 1.00 0.00 0.00 2.92
4593 4706 3.036819 AGTCCAAGCTGCTCTATGATCA 58.963 45.455 1.00 0.00 0.00 2.92
4594 4707 3.453717 AGTCCAAGCTGCTCTATGATCAA 59.546 43.478 1.00 0.00 0.00 2.57
4595 4708 4.102838 AGTCCAAGCTGCTCTATGATCAAT 59.897 41.667 1.00 0.00 0.00 2.57
4596 4709 4.451774 GTCCAAGCTGCTCTATGATCAATC 59.548 45.833 1.00 0.00 0.00 2.67
4597 4710 4.347292 TCCAAGCTGCTCTATGATCAATCT 59.653 41.667 1.00 0.00 0.00 2.40
4598 4711 4.691685 CCAAGCTGCTCTATGATCAATCTC 59.308 45.833 1.00 0.00 0.00 2.75
4599 4712 4.540359 AGCTGCTCTATGATCAATCTCC 57.460 45.455 0.00 0.00 0.00 3.71
4600 4713 3.902467 AGCTGCTCTATGATCAATCTCCA 59.098 43.478 0.00 0.00 0.00 3.86
4601 4714 4.347292 AGCTGCTCTATGATCAATCTCCAA 59.653 41.667 0.00 0.00 0.00 3.53
4602 4715 5.061853 GCTGCTCTATGATCAATCTCCAAA 58.938 41.667 0.00 0.00 0.00 3.28
4603 4716 5.179742 GCTGCTCTATGATCAATCTCCAAAG 59.820 44.000 0.00 0.00 0.00 2.77
4604 4717 5.061853 TGCTCTATGATCAATCTCCAAAGC 58.938 41.667 0.00 1.74 0.00 3.51
4605 4718 4.455190 GCTCTATGATCAATCTCCAAAGCC 59.545 45.833 0.00 0.00 0.00 4.35
4606 4719 5.745476 GCTCTATGATCAATCTCCAAAGCCT 60.745 44.000 0.00 0.00 0.00 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 111 2.871096 AGCACGGTAAATTCTGGGAA 57.129 45.000 0.00 0.00 0.00 3.97
113 114 6.730960 TTTAGTAAGCACGGTAAATTCTGG 57.269 37.500 0.00 0.00 0.00 3.86
180 183 6.785076 TCTGGAAGGGTATATGACAAAACAA 58.215 36.000 0.00 0.00 0.00 2.83
184 187 7.947890 AGTTTTTCTGGAAGGGTATATGACAAA 59.052 33.333 0.00 0.00 0.00 2.83
192 195 4.767409 GCTGAAGTTTTTCTGGAAGGGTAT 59.233 41.667 0.00 0.00 34.06 2.73
193 196 4.142038 GCTGAAGTTTTTCTGGAAGGGTA 58.858 43.478 0.00 0.00 34.06 3.69
194 197 2.959030 GCTGAAGTTTTTCTGGAAGGGT 59.041 45.455 0.00 0.00 34.06 4.34
217 220 8.254508 GCCTACATGTTTTGGGAAATGTTATTA 58.745 33.333 2.30 0.00 0.00 0.98
238 241 2.472909 GGAATGCCTGCGTGCCTAC 61.473 63.158 0.74 0.00 0.00 3.18
239 242 2.124736 GGAATGCCTGCGTGCCTA 60.125 61.111 0.74 0.00 0.00 3.93
298 302 4.459337 CGGCATTATTCCTAATTCCTTCCC 59.541 45.833 0.00 0.00 30.86 3.97
299 303 4.082733 GCGGCATTATTCCTAATTCCTTCC 60.083 45.833 0.00 0.00 30.86 3.46
474 478 7.741554 ACAAGAGAGGAGTAAACATAGGAAT 57.258 36.000 0.00 0.00 0.00 3.01
508 512 2.121129 CAGTTCCGGGAAATAGGGGTA 58.879 52.381 11.82 0.00 0.00 3.69
509 513 0.916809 CAGTTCCGGGAAATAGGGGT 59.083 55.000 11.82 0.00 0.00 4.95
645 649 1.201424 AAATGACCGTCCTACCCTCC 58.799 55.000 0.00 0.00 0.00 4.30
665 669 5.314529 CGGGAAGACTGATATGAGTAGGTA 58.685 45.833 0.00 0.00 0.00 3.08
748 752 3.343788 GAGAGACAGGTCGGCCACG 62.344 68.421 9.71 0.06 42.74 4.94
860 878 2.791158 GCGGTGTATTTGATTCGGCTTG 60.791 50.000 0.00 0.00 0.00 4.01
862 880 1.014352 GCGGTGTATTTGATTCGGCT 58.986 50.000 0.00 0.00 0.00 5.52
896 914 3.532155 TGGTTGGCGTTGGTTGGC 61.532 61.111 0.00 0.00 0.00 4.52
1485 1528 1.884464 CCACATGTCATCGGCCTCG 60.884 63.158 0.00 0.00 37.82 4.63
1729 1772 1.058590 GCGGCGACTATCGTATCGTG 61.059 60.000 12.98 0.00 42.81 4.35
1771 1814 1.848652 TACTCTAGTCCAGTGGGCAC 58.151 55.000 17.90 4.53 0.00 5.01
1772 1815 2.848678 ATACTCTAGTCCAGTGGGCA 57.151 50.000 17.90 0.83 0.00 5.36
1773 1816 5.810080 ATTAATACTCTAGTCCAGTGGGC 57.190 43.478 5.33 5.33 0.00 5.36
1774 1817 8.024145 AGAAATTAATACTCTAGTCCAGTGGG 57.976 38.462 9.92 0.00 0.00 4.61
1874 1919 1.217882 CCACCAAGATAATCGGCGAC 58.782 55.000 13.76 0.00 0.00 5.19
1943 2000 6.453092 AGAGCAGGAATTTGTCAATGAAAAG 58.547 36.000 0.00 0.00 0.00 2.27
1964 2021 6.496338 AACGAAAAAGGCCACTAATTAGAG 57.504 37.500 19.38 11.06 0.00 2.43
2064 2121 2.459934 CACGAAACTTTTCAGGCAACC 58.540 47.619 2.77 0.00 37.01 3.77
2117 2174 4.033358 CGCAACTGGAAGATTATGACAGTC 59.967 45.833 0.00 0.00 41.15 3.51
2172 2233 7.011016 AGCAAAAACCAAAATTAGGACGAAAAG 59.989 33.333 4.01 0.00 0.00 2.27
2190 2251 7.090173 TCTATATTTCCAGCAACAGCAAAAAC 58.910 34.615 0.00 0.00 0.00 2.43
2195 2256 4.454678 CCTCTATATTTCCAGCAACAGCA 58.545 43.478 0.00 0.00 0.00 4.41
2197 2258 3.817647 GCCCTCTATATTTCCAGCAACAG 59.182 47.826 0.00 0.00 0.00 3.16
2209 2270 2.381618 TCCTCAGCTCAGCCCTCTATAT 59.618 50.000 0.00 0.00 0.00 0.86
2212 2273 0.336392 TTCCTCAGCTCAGCCCTCTA 59.664 55.000 0.00 0.00 0.00 2.43
2247 2308 1.597854 TACCGACGACGTCACCAGT 60.598 57.895 26.26 18.61 37.88 4.00
2299 2360 4.131088 GGAGTCGCCGTCCACCTC 62.131 72.222 0.00 0.00 33.84 3.85
2484 2545 3.717294 TCTTCTTCCCCTGCCGGC 61.717 66.667 22.73 22.73 0.00 6.13
2490 2551 2.122954 AGCCGGTCTTCTTCCCCT 59.877 61.111 1.90 0.00 0.00 4.79
2805 2866 1.806461 GCTCCACGATCTCCGGCATA 61.806 60.000 0.00 0.00 43.93 3.14
3643 3704 0.881118 CCCACACATCAAAGAACCCG 59.119 55.000 0.00 0.00 0.00 5.28
3662 3723 1.268896 CCATTGATGCATTCGCTCCAC 60.269 52.381 0.00 0.00 39.64 4.02
3663 3724 1.026584 CCATTGATGCATTCGCTCCA 58.973 50.000 0.00 0.00 39.64 3.86
3664 3725 0.318445 GCCATTGATGCATTCGCTCC 60.318 55.000 0.00 0.00 39.64 4.70
3665 3726 0.382873 TGCCATTGATGCATTCGCTC 59.617 50.000 0.00 0.00 39.64 5.03
3756 3817 0.610687 AGAGCCTTTCTTCACGGAGG 59.389 55.000 0.00 0.00 29.61 4.30
3764 3825 7.281100 CCGTGAAGAAATATAAGAGCCTTTCTT 59.719 37.037 8.53 8.53 45.65 2.52
3765 3826 6.763610 CCGTGAAGAAATATAAGAGCCTTTCT 59.236 38.462 0.00 0.00 39.08 2.52
3766 3827 6.761714 TCCGTGAAGAAATATAAGAGCCTTTC 59.238 38.462 0.00 0.00 0.00 2.62
3770 3831 4.991687 CCTCCGTGAAGAAATATAAGAGCC 59.008 45.833 0.00 0.00 0.00 4.70
3771 3832 5.844004 TCCTCCGTGAAGAAATATAAGAGC 58.156 41.667 0.00 0.00 0.00 4.09
3772 3833 7.493367 ACTTCCTCCGTGAAGAAATATAAGAG 58.507 38.462 11.98 0.00 43.60 2.85
3773 3834 7.419711 ACTTCCTCCGTGAAGAAATATAAGA 57.580 36.000 11.98 0.00 43.60 2.10
3774 3835 8.195436 TGTACTTCCTCCGTGAAGAAATATAAG 58.805 37.037 11.98 0.00 43.60 1.73
3775 3836 8.070034 TGTACTTCCTCCGTGAAGAAATATAA 57.930 34.615 11.98 0.00 43.60 0.98
3776 3837 7.649533 TGTACTTCCTCCGTGAAGAAATATA 57.350 36.000 11.98 0.00 43.60 0.86
3777 3838 6.540438 TGTACTTCCTCCGTGAAGAAATAT 57.460 37.500 11.98 0.00 43.60 1.28
3778 3839 5.988310 TGTACTTCCTCCGTGAAGAAATA 57.012 39.130 11.98 0.00 43.60 1.40
3779 3840 4.884668 TGTACTTCCTCCGTGAAGAAAT 57.115 40.909 11.98 0.00 43.60 2.17
3783 3844 3.926616 ACAATGTACTTCCTCCGTGAAG 58.073 45.455 0.00 5.37 45.79 3.02
3784 3845 5.471556 TTACAATGTACTTCCTCCGTGAA 57.528 39.130 0.00 0.00 0.00 3.18
3785 3846 4.619863 GCTTACAATGTACTTCCTCCGTGA 60.620 45.833 0.00 0.00 0.00 4.35
3786 3847 3.617263 GCTTACAATGTACTTCCTCCGTG 59.383 47.826 0.00 0.00 0.00 4.94
3787 3848 3.675228 CGCTTACAATGTACTTCCTCCGT 60.675 47.826 0.00 0.00 0.00 4.69
3788 3849 2.858344 CGCTTACAATGTACTTCCTCCG 59.142 50.000 0.00 0.00 0.00 4.63
3789 3850 3.858247 ACGCTTACAATGTACTTCCTCC 58.142 45.455 0.00 0.00 0.00 4.30
3794 3898 9.817365 CTATACGTATACGCTTACAATGTACTT 57.183 33.333 24.64 3.02 44.43 2.24
3804 3908 8.520351 TCCTACTACACTATACGTATACGCTTA 58.480 37.037 24.64 14.86 44.43 3.09
3813 3917 6.060136 TCAATGCTCCTACTACACTATACGT 58.940 40.000 0.00 0.00 0.00 3.57
3822 3926 4.408182 ACCACATCAATGCTCCTACTAC 57.592 45.455 0.00 0.00 0.00 2.73
3901 4005 8.245491 CACAATCACATGATCCTTTGACAAATA 58.755 33.333 0.00 0.00 32.75 1.40
3932 4036 4.695455 ACGAATTTACAGGTGGAGTTCATG 59.305 41.667 0.00 0.00 0.00 3.07
3982 4093 8.077386 GTCATTTTCGTTGGGACATTACTTTAA 58.923 33.333 0.00 0.00 39.30 1.52
3988 4099 4.066490 ACGTCATTTTCGTTGGGACATTA 58.934 39.130 0.00 0.00 39.30 1.90
3991 4102 1.956297 ACGTCATTTTCGTTGGGACA 58.044 45.000 0.00 0.00 38.38 4.02
4069 4180 2.566724 GGCCAAATGGTGAAGGAATTGA 59.433 45.455 0.00 0.00 37.57 2.57
4080 4191 0.751643 GGAGCGTATGGCCAAATGGT 60.752 55.000 10.96 7.84 45.17 3.55
4105 4216 7.556844 AGTATATGGAGCCGTTATAAGGAATG 58.443 38.462 6.74 0.00 0.00 2.67
4154 4265 9.994017 AGGAAGTATTTTAAGAGTACTCCTACT 57.006 33.333 19.38 12.75 35.77 2.57
4157 4268 8.973182 CAGAGGAAGTATTTTAAGAGTACTCCT 58.027 37.037 19.38 9.36 33.09 3.69
4158 4269 8.751242 ACAGAGGAAGTATTTTAAGAGTACTCC 58.249 37.037 19.38 1.41 0.00 3.85
4159 4270 9.791820 GACAGAGGAAGTATTTTAAGAGTACTC 57.208 37.037 15.41 15.41 0.00 2.59
4167 4278 5.155278 TGCGGACAGAGGAAGTATTTTAA 57.845 39.130 0.00 0.00 0.00 1.52
4207 4320 6.976636 AATCTTTTGCCTTCGTTTCAAAAA 57.023 29.167 0.00 0.00 38.65 1.94
4208 4321 6.674278 GCAAATCTTTTGCCTTCGTTTCAAAA 60.674 34.615 12.74 0.00 39.38 2.44
4209 4322 5.220567 GCAAATCTTTTGCCTTCGTTTCAAA 60.221 36.000 12.74 0.00 39.38 2.69
4210 4323 4.269844 GCAAATCTTTTGCCTTCGTTTCAA 59.730 37.500 12.74 0.00 39.38 2.69
4211 4324 3.801594 GCAAATCTTTTGCCTTCGTTTCA 59.198 39.130 12.74 0.00 39.38 2.69
4212 4325 4.374990 GCAAATCTTTTGCCTTCGTTTC 57.625 40.909 12.74 0.00 39.38 2.78
4221 4334 7.656707 TTAATTGAAGAGGCAAATCTTTTGC 57.343 32.000 14.88 14.88 39.63 3.68
4226 4339 8.699130 CCCTTATTTAATTGAAGAGGCAAATCT 58.301 33.333 8.75 0.00 0.00 2.40
4227 4340 8.695456 TCCCTTATTTAATTGAAGAGGCAAATC 58.305 33.333 8.75 0.00 0.00 2.17
4228 4341 8.608185 TCCCTTATTTAATTGAAGAGGCAAAT 57.392 30.769 8.75 0.00 0.00 2.32
4229 4342 7.893302 TCTCCCTTATTTAATTGAAGAGGCAAA 59.107 33.333 8.75 0.00 0.00 3.68
4230 4343 7.410174 TCTCCCTTATTTAATTGAAGAGGCAA 58.590 34.615 8.75 0.00 0.00 4.52
4231 4344 6.969043 TCTCCCTTATTTAATTGAAGAGGCA 58.031 36.000 8.75 0.00 0.00 4.75
4232 4345 7.283329 TCTCTCCCTTATTTAATTGAAGAGGC 58.717 38.462 8.75 0.00 0.00 4.70
4233 4346 9.859152 ATTCTCTCCCTTATTTAATTGAAGAGG 57.141 33.333 7.72 7.72 0.00 3.69
4270 4383 6.683090 GCATTTATGAGTGCGTTGTAAAAA 57.317 33.333 0.00 0.00 0.00 1.94
4280 4393 1.601162 CCATGCCGCATTTATGAGTGC 60.601 52.381 2.16 0.00 37.97 4.40
4281 4394 1.601162 GCCATGCCGCATTTATGAGTG 60.601 52.381 2.16 0.00 0.00 3.51
4282 4395 0.670162 GCCATGCCGCATTTATGAGT 59.330 50.000 2.16 0.00 0.00 3.41
4283 4396 0.669619 TGCCATGCCGCATTTATGAG 59.330 50.000 2.16 0.00 32.62 2.90
4284 4397 1.109609 TTGCCATGCCGCATTTATGA 58.890 45.000 2.16 0.00 38.87 2.15
4285 4398 2.157834 ATTGCCATGCCGCATTTATG 57.842 45.000 2.16 0.00 38.87 1.90
4286 4399 2.914695 AATTGCCATGCCGCATTTAT 57.085 40.000 2.16 0.00 38.87 1.40
4287 4400 2.692557 AGTAATTGCCATGCCGCATTTA 59.307 40.909 2.16 0.00 38.87 1.40
4288 4401 1.481772 AGTAATTGCCATGCCGCATTT 59.518 42.857 2.16 0.00 38.87 2.32
4289 4402 1.067516 GAGTAATTGCCATGCCGCATT 59.932 47.619 2.16 0.00 38.87 3.56
4290 4403 0.670162 GAGTAATTGCCATGCCGCAT 59.330 50.000 0.00 0.00 38.87 4.73
4291 4404 1.713937 CGAGTAATTGCCATGCCGCA 61.714 55.000 0.00 0.00 36.85 5.69
4292 4405 1.009675 CGAGTAATTGCCATGCCGC 60.010 57.895 0.00 0.00 0.00 6.53
4293 4406 0.813610 TCCGAGTAATTGCCATGCCG 60.814 55.000 0.00 0.00 0.00 5.69
4294 4407 0.663153 GTCCGAGTAATTGCCATGCC 59.337 55.000 0.00 0.00 0.00 4.40
4295 4408 1.064060 GTGTCCGAGTAATTGCCATGC 59.936 52.381 0.00 0.00 0.00 4.06
4296 4409 2.632377 AGTGTCCGAGTAATTGCCATG 58.368 47.619 0.00 0.00 0.00 3.66
4297 4410 4.689612 ATAGTGTCCGAGTAATTGCCAT 57.310 40.909 0.00 0.00 0.00 4.40
4298 4411 4.481368 AATAGTGTCCGAGTAATTGCCA 57.519 40.909 0.00 0.00 0.00 4.92
4299 4412 5.989777 ACATAATAGTGTCCGAGTAATTGCC 59.010 40.000 0.00 0.00 0.00 4.52
4300 4413 7.307219 GGAACATAATAGTGTCCGAGTAATTGC 60.307 40.741 0.00 0.00 0.00 3.56
4301 4414 7.170998 GGGAACATAATAGTGTCCGAGTAATTG 59.829 40.741 0.00 0.00 0.00 2.32
4302 4415 7.070821 AGGGAACATAATAGTGTCCGAGTAATT 59.929 37.037 0.00 0.00 0.00 1.40
4303 4416 6.553852 AGGGAACATAATAGTGTCCGAGTAAT 59.446 38.462 0.00 0.00 0.00 1.89
4304 4417 5.895534 AGGGAACATAATAGTGTCCGAGTAA 59.104 40.000 0.00 0.00 0.00 2.24
4305 4418 5.452255 AGGGAACATAATAGTGTCCGAGTA 58.548 41.667 0.00 0.00 0.00 2.59
4306 4419 4.287552 AGGGAACATAATAGTGTCCGAGT 58.712 43.478 0.00 0.00 0.00 4.18
4307 4420 4.939052 AGGGAACATAATAGTGTCCGAG 57.061 45.455 0.00 0.00 0.00 4.63
4308 4421 5.452255 ACTAGGGAACATAATAGTGTCCGA 58.548 41.667 0.00 0.00 0.00 4.55
4309 4422 5.786264 ACTAGGGAACATAATAGTGTCCG 57.214 43.478 0.00 0.00 0.00 4.79
4310 4423 7.793036 AGAAACTAGGGAACATAATAGTGTCC 58.207 38.462 0.00 0.00 34.38 4.02
4311 4424 9.668497 AAAGAAACTAGGGAACATAATAGTGTC 57.332 33.333 0.00 0.00 34.16 3.67
4312 4425 9.449719 CAAAGAAACTAGGGAACATAATAGTGT 57.550 33.333 0.00 0.00 0.00 3.55
4313 4426 8.398665 GCAAAGAAACTAGGGAACATAATAGTG 58.601 37.037 0.00 0.00 0.00 2.74
4314 4427 7.280205 CGCAAAGAAACTAGGGAACATAATAGT 59.720 37.037 0.00 0.00 0.00 2.12
4315 4428 7.630924 CGCAAAGAAACTAGGGAACATAATAG 58.369 38.462 0.00 0.00 0.00 1.73
4316 4429 6.037830 GCGCAAAGAAACTAGGGAACATAATA 59.962 38.462 0.30 0.00 0.00 0.98
4317 4430 5.163652 GCGCAAAGAAACTAGGGAACATAAT 60.164 40.000 0.30 0.00 0.00 1.28
4318 4431 4.155280 GCGCAAAGAAACTAGGGAACATAA 59.845 41.667 0.30 0.00 0.00 1.90
4319 4432 3.687698 GCGCAAAGAAACTAGGGAACATA 59.312 43.478 0.30 0.00 0.00 2.29
4320 4433 2.488153 GCGCAAAGAAACTAGGGAACAT 59.512 45.455 0.30 0.00 0.00 2.71
4321 4434 1.877443 GCGCAAAGAAACTAGGGAACA 59.123 47.619 0.30 0.00 0.00 3.18
4322 4435 1.199327 GGCGCAAAGAAACTAGGGAAC 59.801 52.381 10.83 0.00 0.00 3.62
4323 4436 1.530323 GGCGCAAAGAAACTAGGGAA 58.470 50.000 10.83 0.00 0.00 3.97
4324 4437 0.672401 CGGCGCAAAGAAACTAGGGA 60.672 55.000 10.83 0.00 0.00 4.20
4325 4438 1.644786 CCGGCGCAAAGAAACTAGGG 61.645 60.000 10.83 0.00 0.00 3.53
4326 4439 1.794222 CCGGCGCAAAGAAACTAGG 59.206 57.895 10.83 0.00 0.00 3.02
4327 4440 1.134694 GCCGGCGCAAAGAAACTAG 59.865 57.895 12.58 0.00 34.03 2.57
4328 4441 2.673114 CGCCGGCGCAAAGAAACTA 61.673 57.895 38.48 0.00 34.03 2.24
4329 4442 4.025401 CGCCGGCGCAAAGAAACT 62.025 61.111 38.48 0.00 34.03 2.66
4347 4460 4.702131 AGAAGATGCAAAACTATGGGTGAC 59.298 41.667 0.00 0.00 0.00 3.67
4348 4461 4.922206 AGAAGATGCAAAACTATGGGTGA 58.078 39.130 0.00 0.00 0.00 4.02
4349 4462 6.757897 TTAGAAGATGCAAAACTATGGGTG 57.242 37.500 0.00 0.00 0.00 4.61
4350 4463 7.775053 TTTTAGAAGATGCAAAACTATGGGT 57.225 32.000 0.00 0.00 0.00 4.51
4351 4464 8.253113 ACATTTTAGAAGATGCAAAACTATGGG 58.747 33.333 0.00 0.00 0.00 4.00
4352 4465 9.643693 AACATTTTAGAAGATGCAAAACTATGG 57.356 29.630 0.00 0.00 0.00 2.74
4354 4467 9.643693 CCAACATTTTAGAAGATGCAAAACTAT 57.356 29.630 0.00 0.00 0.00 2.12
4355 4468 8.637986 ACCAACATTTTAGAAGATGCAAAACTA 58.362 29.630 0.00 0.00 0.00 2.24
4356 4469 7.500141 ACCAACATTTTAGAAGATGCAAAACT 58.500 30.769 0.00 0.00 0.00 2.66
4357 4470 7.713764 ACCAACATTTTAGAAGATGCAAAAC 57.286 32.000 0.00 0.00 0.00 2.43
4358 4471 9.474920 CTTACCAACATTTTAGAAGATGCAAAA 57.525 29.630 0.00 0.00 0.00 2.44
4359 4472 8.855110 TCTTACCAACATTTTAGAAGATGCAAA 58.145 29.630 0.00 0.00 0.00 3.68
4360 4473 8.402798 TCTTACCAACATTTTAGAAGATGCAA 57.597 30.769 0.00 0.00 0.00 4.08
4361 4474 7.994425 TCTTACCAACATTTTAGAAGATGCA 57.006 32.000 0.00 0.00 0.00 3.96
4362 4475 8.730680 TCTTCTTACCAACATTTTAGAAGATGC 58.269 33.333 0.00 0.00 41.35 3.91
4366 4479 9.760660 CGATTCTTCTTACCAACATTTTAGAAG 57.239 33.333 0.00 0.00 39.76 2.85
4367 4480 9.280174 ACGATTCTTCTTACCAACATTTTAGAA 57.720 29.630 0.00 0.00 0.00 2.10
4368 4481 8.842358 ACGATTCTTCTTACCAACATTTTAGA 57.158 30.769 0.00 0.00 0.00 2.10
4369 4482 7.898309 CGACGATTCTTCTTACCAACATTTTAG 59.102 37.037 0.00 0.00 0.00 1.85
4370 4483 7.148540 CCGACGATTCTTCTTACCAACATTTTA 60.149 37.037 0.00 0.00 0.00 1.52
4371 4484 6.348213 CCGACGATTCTTCTTACCAACATTTT 60.348 38.462 0.00 0.00 0.00 1.82
4372 4485 5.121768 CCGACGATTCTTCTTACCAACATTT 59.878 40.000 0.00 0.00 0.00 2.32
4373 4486 4.630069 CCGACGATTCTTCTTACCAACATT 59.370 41.667 0.00 0.00 0.00 2.71
4374 4487 4.181578 CCGACGATTCTTCTTACCAACAT 58.818 43.478 0.00 0.00 0.00 2.71
4375 4488 3.581755 CCGACGATTCTTCTTACCAACA 58.418 45.455 0.00 0.00 0.00 3.33
4376 4489 2.347755 GCCGACGATTCTTCTTACCAAC 59.652 50.000 0.00 0.00 0.00 3.77
4377 4490 2.613691 GCCGACGATTCTTCTTACCAA 58.386 47.619 0.00 0.00 0.00 3.67
4378 4491 1.468565 CGCCGACGATTCTTCTTACCA 60.469 52.381 0.00 0.00 43.93 3.25
4379 4492 1.197910 CGCCGACGATTCTTCTTACC 58.802 55.000 0.00 0.00 43.93 2.85
4380 4493 1.197910 CCGCCGACGATTCTTCTTAC 58.802 55.000 0.00 0.00 43.93 2.34
4381 4494 0.813184 ACCGCCGACGATTCTTCTTA 59.187 50.000 0.00 0.00 43.93 2.10
4382 4495 0.736325 CACCGCCGACGATTCTTCTT 60.736 55.000 0.00 0.00 43.93 2.52
4383 4496 1.153823 CACCGCCGACGATTCTTCT 60.154 57.895 0.00 0.00 43.93 2.85
4384 4497 2.799540 GCACCGCCGACGATTCTTC 61.800 63.158 0.00 0.00 43.93 2.87
4385 4498 2.813908 GCACCGCCGACGATTCTT 60.814 61.111 0.00 0.00 43.93 2.52
4403 4516 2.212579 CGTTTTCCGCCACAAAAGC 58.787 52.632 0.00 0.00 0.00 3.51
4421 4534 2.727684 GAACGAGAGAAACGCCCGC 61.728 63.158 0.00 0.00 0.00 6.13
4422 4535 2.092882 GGAACGAGAGAAACGCCCG 61.093 63.158 0.00 0.00 0.00 6.13
4423 4536 0.601841 TTGGAACGAGAGAAACGCCC 60.602 55.000 0.00 0.00 0.00 6.13
4424 4537 1.223187 TTTGGAACGAGAGAAACGCC 58.777 50.000 0.00 0.00 0.00 5.68
4425 4538 3.537793 AATTTGGAACGAGAGAAACGC 57.462 42.857 0.00 0.00 0.00 4.84
4426 4539 4.142966 GGGTAATTTGGAACGAGAGAAACG 60.143 45.833 0.00 0.00 0.00 3.60
4427 4540 4.758165 TGGGTAATTTGGAACGAGAGAAAC 59.242 41.667 0.00 0.00 0.00 2.78
4428 4541 4.975631 TGGGTAATTTGGAACGAGAGAAA 58.024 39.130 0.00 0.00 0.00 2.52
4429 4542 4.627284 TGGGTAATTTGGAACGAGAGAA 57.373 40.909 0.00 0.00 0.00 2.87
4430 4543 4.285003 TCTTGGGTAATTTGGAACGAGAGA 59.715 41.667 0.00 0.00 0.00 3.10
4431 4544 4.575885 TCTTGGGTAATTTGGAACGAGAG 58.424 43.478 0.00 0.00 0.00 3.20
4432 4545 4.627284 TCTTGGGTAATTTGGAACGAGA 57.373 40.909 0.00 0.00 0.00 4.04
4433 4546 5.458015 GTTTCTTGGGTAATTTGGAACGAG 58.542 41.667 0.00 0.00 0.00 4.18
4434 4547 4.023878 CGTTTCTTGGGTAATTTGGAACGA 60.024 41.667 0.00 0.00 0.00 3.85
4435 4548 4.023878 TCGTTTCTTGGGTAATTTGGAACG 60.024 41.667 0.00 0.00 0.00 3.95
4436 4549 5.441709 TCGTTTCTTGGGTAATTTGGAAC 57.558 39.130 0.00 0.00 0.00 3.62
4437 4550 4.022676 GCTCGTTTCTTGGGTAATTTGGAA 60.023 41.667 0.00 0.00 0.00 3.53
4438 4551 3.504520 GCTCGTTTCTTGGGTAATTTGGA 59.495 43.478 0.00 0.00 0.00 3.53
4439 4552 3.254657 TGCTCGTTTCTTGGGTAATTTGG 59.745 43.478 0.00 0.00 0.00 3.28
4440 4553 4.497473 TGCTCGTTTCTTGGGTAATTTG 57.503 40.909 0.00 0.00 0.00 2.32
4441 4554 4.082245 CCATGCTCGTTTCTTGGGTAATTT 60.082 41.667 0.00 0.00 0.00 1.82
4442 4555 3.443681 CCATGCTCGTTTCTTGGGTAATT 59.556 43.478 0.00 0.00 0.00 1.40
4443 4556 3.016736 CCATGCTCGTTTCTTGGGTAAT 58.983 45.455 0.00 0.00 0.00 1.89
4444 4557 2.224670 ACCATGCTCGTTTCTTGGGTAA 60.225 45.455 0.00 0.00 34.23 2.85
4445 4558 1.349688 ACCATGCTCGTTTCTTGGGTA 59.650 47.619 0.00 0.00 34.23 3.69
4446 4559 0.110486 ACCATGCTCGTTTCTTGGGT 59.890 50.000 0.00 0.00 34.23 4.51
4447 4560 0.523072 CACCATGCTCGTTTCTTGGG 59.477 55.000 0.00 0.00 34.23 4.12
4448 4561 1.466167 CTCACCATGCTCGTTTCTTGG 59.534 52.381 0.00 0.00 35.56 3.61
4449 4562 1.466167 CCTCACCATGCTCGTTTCTTG 59.534 52.381 0.00 0.00 0.00 3.02
4450 4563 1.611673 CCCTCACCATGCTCGTTTCTT 60.612 52.381 0.00 0.00 0.00 2.52
4451 4564 0.036010 CCCTCACCATGCTCGTTTCT 60.036 55.000 0.00 0.00 0.00 2.52
4452 4565 0.036388 TCCCTCACCATGCTCGTTTC 60.036 55.000 0.00 0.00 0.00 2.78
4453 4566 0.036010 CTCCCTCACCATGCTCGTTT 60.036 55.000 0.00 0.00 0.00 3.60
4454 4567 1.599047 CTCCCTCACCATGCTCGTT 59.401 57.895 0.00 0.00 0.00 3.85
4455 4568 2.362369 CCTCCCTCACCATGCTCGT 61.362 63.158 0.00 0.00 0.00 4.18
4456 4569 2.503061 CCTCCCTCACCATGCTCG 59.497 66.667 0.00 0.00 0.00 5.03
4457 4570 2.191641 GCCTCCCTCACCATGCTC 59.808 66.667 0.00 0.00 0.00 4.26
4458 4571 3.415087 GGCCTCCCTCACCATGCT 61.415 66.667 0.00 0.00 0.00 3.79
4459 4572 2.578586 AATGGCCTCCCTCACCATGC 62.579 60.000 3.32 0.00 43.40 4.06
4460 4573 0.754217 CAATGGCCTCCCTCACCATG 60.754 60.000 3.32 0.00 43.40 3.66
4461 4574 1.616921 CAATGGCCTCCCTCACCAT 59.383 57.895 3.32 0.00 46.15 3.55
4462 4575 3.089838 CAATGGCCTCCCTCACCA 58.910 61.111 3.32 0.00 37.99 4.17
4463 4576 2.440980 GCAATGGCCTCCCTCACC 60.441 66.667 3.32 0.00 0.00 4.02
4464 4577 2.825836 CGCAATGGCCTCCCTCAC 60.826 66.667 3.32 0.00 36.38 3.51
4465 4578 3.329542 GACGCAATGGCCTCCCTCA 62.330 63.158 3.32 0.00 36.38 3.86
4466 4579 2.514824 GACGCAATGGCCTCCCTC 60.515 66.667 3.32 0.00 36.38 4.30
4467 4580 3.011517 AGACGCAATGGCCTCCCT 61.012 61.111 3.32 0.00 36.38 4.20
4468 4581 2.514824 GAGACGCAATGGCCTCCC 60.515 66.667 3.32 0.00 36.38 4.30
4469 4582 2.892425 CGAGACGCAATGGCCTCC 60.892 66.667 3.32 0.00 36.38 4.30
4470 4583 2.892425 CCGAGACGCAATGGCCTC 60.892 66.667 3.32 0.00 36.38 4.70
4471 4584 1.895020 TAACCGAGACGCAATGGCCT 61.895 55.000 3.32 0.00 36.38 5.19
4472 4585 1.429148 CTAACCGAGACGCAATGGCC 61.429 60.000 0.00 0.00 36.38 5.36
4473 4586 1.429148 CCTAACCGAGACGCAATGGC 61.429 60.000 0.00 0.00 0.00 4.40
4474 4587 0.174845 TCCTAACCGAGACGCAATGG 59.825 55.000 0.00 0.00 0.00 3.16
4475 4588 2.004583 TTCCTAACCGAGACGCAATG 57.995 50.000 0.00 0.00 0.00 2.82
4476 4589 2.981859 ATTCCTAACCGAGACGCAAT 57.018 45.000 0.00 0.00 0.00 3.56
4477 4590 4.395959 AATATTCCTAACCGAGACGCAA 57.604 40.909 0.00 0.00 0.00 4.85
4478 4591 5.717078 ATAATATTCCTAACCGAGACGCA 57.283 39.130 0.00 0.00 0.00 5.24
4479 4592 5.924825 ACAATAATATTCCTAACCGAGACGC 59.075 40.000 0.00 0.00 0.00 5.19
4480 4593 7.095774 CCAACAATAATATTCCTAACCGAGACG 60.096 40.741 0.00 0.00 0.00 4.18
4481 4594 7.713942 ACCAACAATAATATTCCTAACCGAGAC 59.286 37.037 0.00 0.00 0.00 3.36
4482 4595 7.798071 ACCAACAATAATATTCCTAACCGAGA 58.202 34.615 0.00 0.00 0.00 4.04
4483 4596 8.446599 AACCAACAATAATATTCCTAACCGAG 57.553 34.615 0.00 0.00 0.00 4.63
4484 4597 8.269317 AGAACCAACAATAATATTCCTAACCGA 58.731 33.333 0.00 0.00 0.00 4.69
4485 4598 8.446599 AGAACCAACAATAATATTCCTAACCG 57.553 34.615 0.00 0.00 0.00 4.44
4511 4624 1.517257 CAACGCGTGGTGGCAAAAA 60.517 52.632 14.98 0.00 0.00 1.94
4512 4625 2.103143 CAACGCGTGGTGGCAAAA 59.897 55.556 14.98 0.00 0.00 2.44
4513 4626 2.824489 TCAACGCGTGGTGGCAAA 60.824 55.556 14.98 0.00 0.00 3.68
4514 4627 3.578272 GTCAACGCGTGGTGGCAA 61.578 61.111 14.98 0.00 0.00 4.52
4518 4631 2.689575 GAAACCGTCAACGCGTGGTG 62.690 60.000 18.45 7.95 38.18 4.17
4519 4632 2.512057 AAACCGTCAACGCGTGGT 60.512 55.556 14.98 13.66 38.18 4.16
4520 4633 1.837538 ATGAAACCGTCAACGCGTGG 61.838 55.000 14.98 11.08 40.50 4.94
4521 4634 0.450482 GATGAAACCGTCAACGCGTG 60.450 55.000 14.98 7.52 40.50 5.34
4522 4635 1.562575 GGATGAAACCGTCAACGCGT 61.563 55.000 5.58 5.58 40.50 6.01
4523 4636 1.131826 GGATGAAACCGTCAACGCG 59.868 57.895 3.53 3.53 40.50 6.01
4524 4637 1.131826 CGGATGAAACCGTCAACGC 59.868 57.895 0.00 0.00 46.70 4.84
4532 4645 0.321653 AGTGGCACTCGGATGAAACC 60.322 55.000 15.88 0.00 0.00 3.27
4533 4646 1.079503 GAGTGGCACTCGGATGAAAC 58.920 55.000 29.91 6.66 35.28 2.78
4534 4647 3.532896 GAGTGGCACTCGGATGAAA 57.467 52.632 29.91 0.00 35.28 2.69
4542 4655 2.262915 CACCTCCGAGTGGCACTC 59.737 66.667 32.72 32.72 41.71 3.51
4543 4656 2.524394 ACACCTCCGAGTGGCACT 60.524 61.111 22.26 22.26 42.28 4.40
4544 4657 2.048127 GACACCTCCGAGTGGCAC 60.048 66.667 10.29 10.29 45.71 5.01
4546 4659 2.660064 ATGGACACCTCCGAGTGGC 61.660 63.158 5.41 1.96 45.68 5.01
4547 4660 1.219124 CATGGACACCTCCGAGTGG 59.781 63.158 5.41 0.00 42.28 4.00
4548 4661 0.390340 CACATGGACACCTCCGAGTG 60.390 60.000 0.00 0.00 39.88 3.51
4549 4662 0.832135 ACACATGGACACCTCCGAGT 60.832 55.000 0.00 0.00 39.88 4.18
4550 4663 0.390340 CACACATGGACACCTCCGAG 60.390 60.000 0.00 0.00 39.88 4.63
4551 4664 1.671166 CACACATGGACACCTCCGA 59.329 57.895 0.00 0.00 39.88 4.55
4552 4665 2.034879 GCACACATGGACACCTCCG 61.035 63.158 0.00 0.00 39.88 4.63
4553 4666 0.537143 TTGCACACATGGACACCTCC 60.537 55.000 0.00 0.00 37.04 4.30
4554 4667 0.877071 CTTGCACACATGGACACCTC 59.123 55.000 0.00 0.00 0.00 3.85
4555 4668 0.183492 ACTTGCACACATGGACACCT 59.817 50.000 0.00 0.00 0.00 4.00
4556 4669 0.593128 GACTTGCACACATGGACACC 59.407 55.000 0.00 0.00 0.00 4.16
4557 4670 0.593128 GGACTTGCACACATGGACAC 59.407 55.000 0.00 0.00 0.00 3.67
4558 4671 0.182299 TGGACTTGCACACATGGACA 59.818 50.000 0.00 0.00 0.00 4.02
4559 4672 1.267806 CTTGGACTTGCACACATGGAC 59.732 52.381 0.00 0.00 0.00 4.02
4560 4673 1.608055 CTTGGACTTGCACACATGGA 58.392 50.000 0.00 0.00 0.00 3.41
4561 4674 0.038892 GCTTGGACTTGCACACATGG 60.039 55.000 0.00 0.00 0.00 3.66
4562 4675 0.956633 AGCTTGGACTTGCACACATG 59.043 50.000 0.00 0.00 0.00 3.21
4563 4676 0.956633 CAGCTTGGACTTGCACACAT 59.043 50.000 0.00 0.00 0.00 3.21
4564 4677 1.727511 GCAGCTTGGACTTGCACACA 61.728 55.000 0.00 0.00 37.75 3.72
4565 4678 1.008079 GCAGCTTGGACTTGCACAC 60.008 57.895 0.00 0.00 37.75 3.82
4566 4679 1.152902 AGCAGCTTGGACTTGCACA 60.153 52.632 0.00 0.00 40.22 4.57
4567 4680 0.888285 AGAGCAGCTTGGACTTGCAC 60.888 55.000 0.00 0.00 40.22 4.57
4568 4681 0.686789 TAGAGCAGCTTGGACTTGCA 59.313 50.000 0.00 0.00 40.22 4.08
4569 4682 1.669779 CATAGAGCAGCTTGGACTTGC 59.330 52.381 0.00 0.00 38.09 4.01
4570 4683 3.257469 TCATAGAGCAGCTTGGACTTG 57.743 47.619 0.00 0.00 0.00 3.16
4571 4684 3.453717 TGATCATAGAGCAGCTTGGACTT 59.546 43.478 0.00 0.00 0.00 3.01
4572 4685 3.036819 TGATCATAGAGCAGCTTGGACT 58.963 45.455 0.00 0.00 0.00 3.85
4573 4686 3.465742 TGATCATAGAGCAGCTTGGAC 57.534 47.619 0.00 0.00 0.00 4.02
4574 4687 4.347292 AGATTGATCATAGAGCAGCTTGGA 59.653 41.667 0.00 0.00 0.00 3.53
4575 4688 4.643463 AGATTGATCATAGAGCAGCTTGG 58.357 43.478 0.00 0.00 0.00 3.61
4576 4689 4.691685 GGAGATTGATCATAGAGCAGCTTG 59.308 45.833 0.00 0.00 0.00 4.01
4577 4690 4.347292 TGGAGATTGATCATAGAGCAGCTT 59.653 41.667 0.00 0.00 0.00 3.74
4578 4691 3.902467 TGGAGATTGATCATAGAGCAGCT 59.098 43.478 0.00 0.00 0.00 4.24
4579 4692 4.268797 TGGAGATTGATCATAGAGCAGC 57.731 45.455 0.00 0.00 0.00 5.25
4580 4693 5.179742 GCTTTGGAGATTGATCATAGAGCAG 59.820 44.000 0.00 0.00 0.00 4.24
4581 4694 5.061853 GCTTTGGAGATTGATCATAGAGCA 58.938 41.667 0.00 0.00 0.00 4.26
4582 4695 4.455190 GGCTTTGGAGATTGATCATAGAGC 59.545 45.833 0.00 0.00 0.00 4.09
4583 4696 5.867330 AGGCTTTGGAGATTGATCATAGAG 58.133 41.667 0.00 0.00 0.00 2.43
4584 4697 5.901413 AGGCTTTGGAGATTGATCATAGA 57.099 39.130 0.00 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.