Multiple sequence alignment - TraesCS3D01G230100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G230100 chr3D 100.000 3897 0 0 4971 8867 313605191 313609087 0.000000e+00 7197.0
1 TraesCS3D01G230100 chr3D 100.000 3492 0 0 1 3492 313600221 313603712 0.000000e+00 6449.0
2 TraesCS3D01G230100 chr3D 100.000 1007 0 0 3653 4659 313603873 313604879 0.000000e+00 1860.0
3 TraesCS3D01G230100 chr3D 94.961 258 9 4 1954 2208 101799652 101799396 1.390000e-107 401.0
4 TraesCS3D01G230100 chr3D 91.304 253 19 3 1956 2206 93027028 93026777 8.520000e-90 342.0
5 TraesCS3D01G230100 chr3D 89.062 64 4 3 3654 3714 303792784 303792847 9.550000e-10 76.8
6 TraesCS3D01G230100 chr3A 95.840 3894 127 18 4971 8845 416130088 416133965 0.000000e+00 6261.0
7 TraesCS3D01G230100 chr3A 97.992 946 16 3 3715 4659 416129046 416129989 0.000000e+00 1639.0
8 TraesCS3D01G230100 chr3A 95.223 942 42 3 1018 1959 416126923 416127861 0.000000e+00 1487.0
9 TraesCS3D01G230100 chr3A 96.536 866 24 5 2613 3476 416128201 416129062 0.000000e+00 1428.0
10 TraesCS3D01G230100 chr3A 91.443 596 34 8 429 1014 416125997 416126585 0.000000e+00 802.0
11 TraesCS3D01G230100 chr3A 97.567 411 9 1 2199 2608 416127854 416128264 0.000000e+00 702.0
12 TraesCS3D01G230100 chr3A 85.969 392 40 2 1 377 416124638 416125029 1.070000e-108 405.0
13 TraesCS3D01G230100 chr3A 90.769 260 18 4 1942 2197 46456668 46456925 8.520000e-90 342.0
14 TraesCS3D01G230100 chr3A 88.889 279 22 3 1947 2218 596114672 596114396 1.430000e-87 335.0
15 TraesCS3D01G230100 chr3A 87.500 280 31 2 1 276 416117910 416118189 3.990000e-83 320.0
16 TraesCS3D01G230100 chr3A 87.050 278 32 2 1 275 416120408 416120684 2.400000e-80 311.0
17 TraesCS3D01G230100 chr3B 96.334 3710 91 15 4971 8664 405954535 405950855 0.000000e+00 6056.0
18 TraesCS3D01G230100 chr3B 91.831 1983 111 21 1 1959 405958817 405956862 0.000000e+00 2717.0
19 TraesCS3D01G230100 chr3B 97.529 1295 29 3 2199 3492 405956869 405955577 0.000000e+00 2211.0
20 TraesCS3D01G230100 chr3B 97.522 1009 20 4 3653 4659 405955550 405954545 0.000000e+00 1720.0
21 TraesCS3D01G230100 chr3B 91.829 257 21 0 1951 2207 150851272 150851016 8.460000e-95 359.0
22 TraesCS3D01G230100 chr5D 95.436 241 9 2 1959 2198 554139904 554139665 5.020000e-102 383.0
23 TraesCS3D01G230100 chr5D 92.308 247 17 2 1959 2203 464526131 464526377 5.090000e-92 350.0
24 TraesCS3D01G230100 chr5D 100.000 38 0 0 2847 2884 45654427 45654390 4.440000e-08 71.3
25 TraesCS3D01G230100 chr5D 92.000 50 2 2 2835 2884 441926104 441926057 1.600000e-07 69.4
26 TraesCS3D01G230100 chr7D 93.724 239 15 0 1959 2197 621304421 621304183 8.460000e-95 359.0
27 TraesCS3D01G230100 chr7D 92.917 240 17 0 1959 2198 207082824 207082585 5.090000e-92 350.0
28 TraesCS3D01G230100 chr7D 83.688 282 32 4 1 270 540118153 540118432 4.110000e-63 254.0
29 TraesCS3D01G230100 chr7D 83.471 242 31 6 1 237 94798918 94799155 5.390000e-52 217.0
30 TraesCS3D01G230100 chr5B 90.909 253 22 1 1955 2207 548677898 548677647 1.100000e-88 339.0
31 TraesCS3D01G230100 chr5B 86.975 238 23 7 1 234 439282932 439283165 2.460000e-65 261.0
32 TraesCS3D01G230100 chr1B 85.043 234 29 3 46 274 341729019 341728787 5.350000e-57 233.0
33 TraesCS3D01G230100 chr6B 80.496 282 38 8 6 274 648706009 648705732 5.430000e-47 200.0
34 TraesCS3D01G230100 chr2A 80.586 273 37 7 282 545 576361976 576361711 7.020000e-46 196.0
35 TraesCS3D01G230100 chr2D 82.873 181 29 2 371 550 369372957 369373136 2.560000e-35 161.0
36 TraesCS3D01G230100 chr7A 98.361 61 1 0 3653 3713 536982267 536982327 3.390000e-19 108.0
37 TraesCS3D01G230100 chr7A 100.000 36 0 0 2849 2884 454049753 454049718 5.750000e-07 67.6
38 TraesCS3D01G230100 chr6D 96.774 62 2 0 3654 3715 472379945 472379884 4.380000e-18 104.0
39 TraesCS3D01G230100 chr2B 97.561 41 1 0 2844 2884 796805880 796805920 4.440000e-08 71.3
40 TraesCS3D01G230100 chr1D 97.619 42 0 1 2843 2884 59951841 59951881 4.440000e-08 71.3
41 TraesCS3D01G230100 chr4B 100.000 37 0 0 2848 2884 68119872 68119836 1.600000e-07 69.4
42 TraesCS3D01G230100 chr4B 86.441 59 7 1 2838 2896 669693866 669693809 7.430000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G230100 chr3D 313600221 313609087 8866 False 5168.666667 7197 100.000000 1 8867 3 chr3D.!!$F2 8866
1 TraesCS3D01G230100 chr3A 416117910 416133965 16055 False 1483.888889 6261 92.791111 1 8845 9 chr3A.!!$F2 8844
2 TraesCS3D01G230100 chr3B 405950855 405958817 7962 True 3176.000000 6056 95.804000 1 8664 4 chr3B.!!$R2 8663

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
115 2618 0.178068 TTGCCGAATGAGGAGCTACC 59.822 55.000 0.00 0.0 39.35 3.18 F
1302 9310 0.182775 ATAAGGCTAGGGTTTGGGCG 59.817 55.000 0.00 0.0 0.00 6.13 F
1567 9575 0.244721 GTGCTGCTTTGGGGACATTC 59.755 55.000 0.00 0.0 42.32 2.67 F
2164 10174 0.036388 AACGTTCGGGATGACATGCT 60.036 50.000 6.91 0.0 0.00 3.79 F
2619 10630 0.110056 GCACTTGACAACCGATGCAG 60.110 55.000 0.00 0.0 33.27 4.41 F
2624 10635 0.250252 TGACAACCGATGCAGCTTGA 60.250 50.000 10.51 0.0 0.00 3.02 F
2625 10636 0.874390 GACAACCGATGCAGCTTGAA 59.126 50.000 10.51 0.0 0.00 2.69 F
2626 10637 1.266718 GACAACCGATGCAGCTTGAAA 59.733 47.619 10.51 0.0 0.00 2.69 F
2630 10641 1.267806 ACCGATGCAGCTTGAAAACTG 59.732 47.619 0.00 0.0 36.96 3.16 F
2631 10642 1.267806 CCGATGCAGCTTGAAAACTGT 59.732 47.619 0.00 0.0 36.26 3.55 F
2636 10647 2.122564 GCAGCTTGAAAACTGTCTTGC 58.877 47.619 0.00 0.0 36.26 4.01 F
2637 10648 2.223665 GCAGCTTGAAAACTGTCTTGCT 60.224 45.455 0.00 0.0 36.26 3.91 F
2649 10660 3.127548 ACTGTCTTGCTTGTGAACTTGTG 59.872 43.478 0.00 0.0 0.00 3.33 F
5213 13294 2.565834 TGGTGACCTTAGAGTGCTAACC 59.434 50.000 2.11 0.0 33.24 2.85 F
6333 14419 0.324275 GGCTTTAATGGGGCTGGTGA 60.324 55.000 0.00 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2072 10082 0.310854 GGCAACTTTGTTCCAGGTCG 59.689 55.000 0.00 0.00 0.00 4.79 R
2145 10155 0.036388 AGCATGTCATCCCGAACGTT 60.036 50.000 0.00 0.00 0.00 3.99 R
2601 10612 0.110056 GCTGCATCGGTTGTCAAGTG 60.110 55.000 0.00 0.00 0.00 3.16 R
3776 11855 0.392998 AACAACTCCGGCTATGGCAG 60.393 55.000 2.58 0.00 40.87 4.85 R
4469 12549 4.273480 CCCATACAGCAAAGTACATAGCAC 59.727 45.833 0.00 0.00 0.00 4.40 R
4580 12660 6.882678 GCTCCAGTTAAAAGTATTCCCTACAA 59.117 38.462 0.00 0.00 32.34 2.41 R
5028 13109 5.437289 TGCATTTACCAAAGAACTGACTG 57.563 39.130 0.00 0.00 0.00 3.51 R
5029 13110 6.151144 GGTATGCATTTACCAAAGAACTGACT 59.849 38.462 12.90 0.00 41.18 3.41 R
5038 13119 6.259167 CGCTAGTAAGGTATGCATTTACCAAA 59.741 38.462 18.72 5.38 43.51 3.28 R
5062 13143 1.468054 GCCTAAATCACAAAGCCAGCG 60.468 52.381 0.00 0.00 0.00 5.18 R
5174 13255 9.185680 AGGTCACCAAATATACAAGGAAAATAC 57.814 33.333 0.00 0.00 0.00 1.89 R
5213 13294 1.059942 GGCAATTTTTGGAGTTCGCG 58.940 50.000 0.00 0.00 0.00 5.87 R
5219 13300 4.178540 CAGCACATAGGCAATTTTTGGAG 58.821 43.478 0.00 0.00 35.83 3.86 R
6824 14919 1.978542 ACTACTAGTTCAAGCGTGCG 58.021 50.000 0.00 0.00 0.00 5.34 R
8460 16563 0.036875 GTTACTGAAGCCTGCACCCT 59.963 55.000 0.00 0.00 0.00 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.916181 CTACCCCTCCACATGTTCCTT 59.084 52.381 0.00 0.00 0.00 3.36
40 41 0.462759 CATGTTCCTTCTCCCTCCGC 60.463 60.000 0.00 0.00 0.00 5.54
62 63 2.040544 CGCCGCCATTTTCCACTCT 61.041 57.895 0.00 0.00 0.00 3.24
65 66 0.322456 CCGCCATTTTCCACTCTCCA 60.322 55.000 0.00 0.00 0.00 3.86
73 74 0.982852 TTCCACTCTCCATCCGCCAT 60.983 55.000 0.00 0.00 0.00 4.40
94 95 0.401979 ACTAGTAGCCATGCCCCCAT 60.402 55.000 0.00 0.00 0.00 4.00
96 97 0.697511 TAGTAGCCATGCCCCCATGT 60.698 55.000 3.34 0.00 45.90 3.21
102 103 4.059304 ATGCCCCCATGTTGCCGA 62.059 61.111 0.00 0.00 0.00 5.54
112 2615 0.254178 ATGTTGCCGAATGAGGAGCT 59.746 50.000 0.00 0.00 0.00 4.09
113 2616 0.901827 TGTTGCCGAATGAGGAGCTA 59.098 50.000 0.00 0.00 0.00 3.32
114 2617 1.291132 GTTGCCGAATGAGGAGCTAC 58.709 55.000 0.00 0.00 0.00 3.58
115 2618 0.178068 TTGCCGAATGAGGAGCTACC 59.822 55.000 0.00 0.00 39.35 3.18
163 6896 3.861341 CTCCTTGAGCAAATCCGGA 57.139 52.632 6.61 6.61 0.00 5.14
168 6901 2.426522 CTTGAGCAAATCCGGACAAGA 58.573 47.619 20.14 0.00 37.49 3.02
208 6941 1.635817 GGGGCTACCTCTGGATGCAA 61.636 60.000 0.00 0.00 36.80 4.08
341 7089 3.829044 CCCGGCACCGACGTCATA 61.829 66.667 17.16 0.00 42.83 2.15
386 7148 6.576778 AACTAGGGTAGCACATAGGATTTT 57.423 37.500 0.00 0.00 0.00 1.82
424 7186 9.573166 TTGTATGGATCTAAGGGTTGAAATATG 57.427 33.333 0.00 0.00 0.00 1.78
426 7188 9.442047 GTATGGATCTAAGGGTTGAAATATGAG 57.558 37.037 0.00 0.00 0.00 2.90
429 7191 8.213679 TGGATCTAAGGGTTGAAATATGAGAAG 58.786 37.037 0.00 0.00 0.00 2.85
435 8099 3.561725 GGTTGAAATATGAGAAGCTCGGG 59.438 47.826 0.00 0.00 32.35 5.14
457 8121 5.246307 GGTGTAGAGTAGCAAATTTGAGGT 58.754 41.667 22.31 7.75 0.00 3.85
496 8160 4.353437 AAGCGTCCGGTCACGTCC 62.353 66.667 16.07 1.97 42.04 4.79
515 8179 1.079405 GCGGACGTTTGAGGGATCA 60.079 57.895 0.00 0.00 0.00 2.92
518 8182 1.469940 CGGACGTTTGAGGGATCAGAG 60.470 57.143 0.00 0.00 0.00 3.35
530 8194 0.532573 GATCAGAGTTGCCGAGTCCA 59.467 55.000 0.00 0.00 0.00 4.02
533 8197 1.910772 AGAGTTGCCGAGTCCAGCT 60.911 57.895 1.87 0.00 0.00 4.24
535 8199 2.031163 GTTGCCGAGTCCAGCTGT 59.969 61.111 13.81 0.00 0.00 4.40
539 8203 1.139947 GCCGAGTCCAGCTGTAGAC 59.860 63.158 13.81 13.61 0.00 2.59
600 8264 3.488047 GCTTTTCTGTATGCGTGCATGAT 60.488 43.478 17.21 3.20 37.82 2.45
611 8275 4.021280 ATGCGTGCATGATAGAGAGAATCT 60.021 41.667 10.93 0.00 41.62 2.40
613 8277 8.187368 ATGCGTGCATGATAGAGAGAATCTGA 62.187 42.308 10.93 0.00 39.81 3.27
628 8292 3.726557 ATCTGATCCCTTGCTTGAACA 57.273 42.857 0.00 0.00 0.00 3.18
654 8318 0.393537 CCAAGGCGAGCTCAAATCCT 60.394 55.000 15.40 10.91 0.00 3.24
984 8658 4.821589 CCGCCTCACTCCGCCTTC 62.822 72.222 0.00 0.00 0.00 3.46
1302 9310 0.182775 ATAAGGCTAGGGTTTGGGCG 59.817 55.000 0.00 0.00 0.00 6.13
1531 9539 7.134815 ACAACGATTCTTTGATGTTTTCTGAG 58.865 34.615 9.62 0.00 0.00 3.35
1560 9568 0.320946 CAAATGGGTGCTGCTTTGGG 60.321 55.000 0.00 0.00 0.00 4.12
1567 9575 0.244721 GTGCTGCTTTGGGGACATTC 59.755 55.000 0.00 0.00 42.32 2.67
1569 9577 1.508088 CTGCTTTGGGGACATTCGC 59.492 57.895 0.00 0.00 42.32 4.70
1615 9623 2.128771 TCAGGGGATTGCTTGCTAAC 57.871 50.000 0.00 0.00 0.00 2.34
1640 9648 7.470192 CCCATAGGGTTGGACTATTGATTTAT 58.530 38.462 0.00 0.00 39.25 1.40
1646 9654 9.799106 AGGGTTGGACTATTGATTTATCTAATG 57.201 33.333 0.00 0.00 0.00 1.90
1659 9667 2.665649 TCTAATGACACGGTCGCAAT 57.334 45.000 0.00 0.00 34.95 3.56
1819 9829 8.121305 ACCATTACTTTGCACAATCTCAAATA 57.879 30.769 0.00 0.00 32.51 1.40
1873 9883 5.754543 CAAATTCAGTGGCATTTGGTTTT 57.245 34.783 15.68 0.00 36.93 2.43
1963 9973 8.677148 TTGATGCTACTGAAATAATTAGGACC 57.323 34.615 0.00 0.00 0.00 4.46
1964 9974 8.034313 TGATGCTACTGAAATAATTAGGACCT 57.966 34.615 0.00 0.00 0.00 3.85
1965 9975 8.150945 TGATGCTACTGAAATAATTAGGACCTC 58.849 37.037 0.00 0.00 0.00 3.85
1966 9976 7.432148 TGCTACTGAAATAATTAGGACCTCA 57.568 36.000 0.00 0.00 0.00 3.86
1967 9977 7.857456 TGCTACTGAAATAATTAGGACCTCAA 58.143 34.615 0.00 0.00 0.00 3.02
1968 9978 8.494433 TGCTACTGAAATAATTAGGACCTCAAT 58.506 33.333 0.00 0.00 0.00 2.57
1969 9979 9.998106 GCTACTGAAATAATTAGGACCTCAATA 57.002 33.333 0.00 0.00 0.00 1.90
1979 9989 2.902523 GGACCTCAATAAGTCCCGAAC 58.097 52.381 0.00 0.00 45.76 3.95
1980 9990 2.537401 GACCTCAATAAGTCCCGAACG 58.463 52.381 0.00 0.00 0.00 3.95
1981 9991 1.897802 ACCTCAATAAGTCCCGAACGT 59.102 47.619 0.00 0.00 0.00 3.99
1982 9992 2.301009 ACCTCAATAAGTCCCGAACGTT 59.699 45.455 0.00 0.00 0.00 3.99
1983 9993 2.928116 CCTCAATAAGTCCCGAACGTTC 59.072 50.000 18.47 18.47 0.00 3.95
1995 10005 3.443054 CGAACGTTCGGAATTTAAGCA 57.557 42.857 36.53 0.00 46.30 3.91
1996 10006 3.998522 CGAACGTTCGGAATTTAAGCAT 58.001 40.909 36.53 0.00 46.30 3.79
1997 10007 3.778718 CGAACGTTCGGAATTTAAGCATG 59.221 43.478 36.53 8.97 46.30 4.06
1998 10008 3.131240 ACGTTCGGAATTTAAGCATGC 57.869 42.857 10.51 10.51 0.00 4.06
1999 10009 2.747446 ACGTTCGGAATTTAAGCATGCT 59.253 40.909 16.30 16.30 0.00 3.79
2000 10010 3.936453 ACGTTCGGAATTTAAGCATGCTA 59.064 39.130 23.00 5.74 0.00 3.49
2001 10011 4.393680 ACGTTCGGAATTTAAGCATGCTAA 59.606 37.500 23.00 13.40 0.00 3.09
2002 10012 5.065988 ACGTTCGGAATTTAAGCATGCTAAT 59.934 36.000 23.00 15.27 0.00 1.73
2003 10013 5.621228 CGTTCGGAATTTAAGCATGCTAATC 59.379 40.000 23.00 14.07 0.00 1.75
2004 10014 5.689383 TCGGAATTTAAGCATGCTAATCC 57.311 39.130 23.00 20.63 0.00 3.01
2005 10015 4.213270 TCGGAATTTAAGCATGCTAATCCG 59.787 41.667 32.04 32.04 37.23 4.18
2006 10016 4.213270 CGGAATTTAAGCATGCTAATCCGA 59.787 41.667 33.17 16.50 38.00 4.55
2007 10017 5.277779 CGGAATTTAAGCATGCTAATCCGAA 60.278 40.000 33.17 19.44 38.00 4.30
2008 10018 5.915196 GGAATTTAAGCATGCTAATCCGAAC 59.085 40.000 23.00 8.66 0.00 3.95
2009 10019 6.238759 GGAATTTAAGCATGCTAATCCGAACT 60.239 38.462 23.00 4.09 0.00 3.01
2010 10020 5.734855 TTTAAGCATGCTAATCCGAACTC 57.265 39.130 23.00 0.00 0.00 3.01
2011 10021 3.550437 AAGCATGCTAATCCGAACTCT 57.450 42.857 23.00 0.00 0.00 3.24
2012 10022 3.550437 AGCATGCTAATCCGAACTCTT 57.450 42.857 21.21 0.00 0.00 2.85
2013 10023 3.878778 AGCATGCTAATCCGAACTCTTT 58.121 40.909 21.21 0.00 0.00 2.52
2014 10024 4.265073 AGCATGCTAATCCGAACTCTTTT 58.735 39.130 21.21 0.00 0.00 2.27
2015 10025 4.333926 AGCATGCTAATCCGAACTCTTTTC 59.666 41.667 21.21 0.00 0.00 2.29
2016 10026 4.094887 GCATGCTAATCCGAACTCTTTTCA 59.905 41.667 11.37 0.00 0.00 2.69
2017 10027 5.220931 GCATGCTAATCCGAACTCTTTTCAT 60.221 40.000 11.37 0.00 0.00 2.57
2018 10028 5.801350 TGCTAATCCGAACTCTTTTCATG 57.199 39.130 0.00 0.00 0.00 3.07
2019 10029 4.635765 TGCTAATCCGAACTCTTTTCATGG 59.364 41.667 0.00 0.00 0.00 3.66
2020 10030 4.496507 GCTAATCCGAACTCTTTTCATGGC 60.497 45.833 0.00 0.00 0.00 4.40
2021 10031 2.559698 TCCGAACTCTTTTCATGGCA 57.440 45.000 0.00 0.00 0.00 4.92
2022 10032 2.857483 TCCGAACTCTTTTCATGGCAA 58.143 42.857 0.00 0.00 0.00 4.52
2023 10033 2.552315 TCCGAACTCTTTTCATGGCAAC 59.448 45.455 0.00 0.00 0.00 4.17
2024 10034 2.554032 CCGAACTCTTTTCATGGCAACT 59.446 45.455 0.00 0.00 37.61 3.16
2025 10035 3.004734 CCGAACTCTTTTCATGGCAACTT 59.995 43.478 0.00 0.00 37.61 2.66
2026 10036 4.499696 CCGAACTCTTTTCATGGCAACTTT 60.500 41.667 0.00 0.00 37.61 2.66
2027 10037 5.278266 CCGAACTCTTTTCATGGCAACTTTA 60.278 40.000 0.00 0.00 37.61 1.85
2028 10038 6.205784 CGAACTCTTTTCATGGCAACTTTAA 58.794 36.000 0.00 0.00 37.61 1.52
2029 10039 6.863126 CGAACTCTTTTCATGGCAACTTTAAT 59.137 34.615 0.00 0.00 37.61 1.40
2030 10040 7.061094 CGAACTCTTTTCATGGCAACTTTAATC 59.939 37.037 0.00 0.00 37.61 1.75
2031 10041 7.288810 ACTCTTTTCATGGCAACTTTAATCA 57.711 32.000 0.00 0.00 37.61 2.57
2032 10042 7.725251 ACTCTTTTCATGGCAACTTTAATCAA 58.275 30.769 0.00 0.00 37.61 2.57
2033 10043 7.869429 ACTCTTTTCATGGCAACTTTAATCAAG 59.131 33.333 0.00 0.00 38.64 3.02
2034 10044 7.950512 TCTTTTCATGGCAACTTTAATCAAGA 58.049 30.769 0.00 0.00 36.21 3.02
2035 10045 7.867403 TCTTTTCATGGCAACTTTAATCAAGAC 59.133 33.333 0.00 0.00 36.21 3.01
2036 10046 5.295431 TCATGGCAACTTTAATCAAGACG 57.705 39.130 0.00 0.00 36.21 4.18
2037 10047 4.759693 TCATGGCAACTTTAATCAAGACGT 59.240 37.500 0.00 0.00 36.21 4.34
2038 10048 5.240623 TCATGGCAACTTTAATCAAGACGTT 59.759 36.000 0.00 0.00 36.21 3.99
2039 10049 4.854399 TGGCAACTTTAATCAAGACGTTG 58.146 39.130 0.00 0.00 36.21 4.10
2040 10050 4.336993 TGGCAACTTTAATCAAGACGTTGT 59.663 37.500 0.00 0.00 36.21 3.32
2041 10051 5.527951 TGGCAACTTTAATCAAGACGTTGTA 59.472 36.000 0.00 0.00 36.21 2.41
2042 10052 6.077838 GGCAACTTTAATCAAGACGTTGTAG 58.922 40.000 0.00 0.00 36.21 2.74
2043 10053 6.073440 GGCAACTTTAATCAAGACGTTGTAGA 60.073 38.462 0.00 0.00 36.21 2.59
2044 10054 6.790825 GCAACTTTAATCAAGACGTTGTAGAC 59.209 38.462 0.00 0.00 36.21 2.59
2045 10055 7.517734 GCAACTTTAATCAAGACGTTGTAGACA 60.518 37.037 0.00 0.00 36.21 3.41
2046 10056 8.332464 CAACTTTAATCAAGACGTTGTAGACAA 58.668 33.333 0.00 0.00 36.21 3.18
2047 10057 8.428186 ACTTTAATCAAGACGTTGTAGACAAA 57.572 30.769 0.00 0.00 35.52 2.83
2048 10058 8.333186 ACTTTAATCAAGACGTTGTAGACAAAC 58.667 33.333 0.00 0.00 35.52 2.93
2049 10059 7.773864 TTAATCAAGACGTTGTAGACAAACA 57.226 32.000 0.00 0.00 37.63 2.83
2050 10060 6.861065 AATCAAGACGTTGTAGACAAACAT 57.139 33.333 0.00 0.00 37.63 2.71
2051 10061 5.651172 TCAAGACGTTGTAGACAAACATG 57.349 39.130 0.00 0.00 37.63 3.21
2052 10062 4.509970 TCAAGACGTTGTAGACAAACATGG 59.490 41.667 0.00 0.00 37.63 3.66
2053 10063 2.806244 AGACGTTGTAGACAAACATGGC 59.194 45.455 0.00 0.00 37.63 4.40
2054 10064 2.546368 GACGTTGTAGACAAACATGGCA 59.454 45.455 0.00 0.00 37.63 4.92
2055 10065 2.946329 ACGTTGTAGACAAACATGGCAA 59.054 40.909 0.00 0.00 37.63 4.52
2056 10066 3.568007 ACGTTGTAGACAAACATGGCAAT 59.432 39.130 0.00 0.00 37.63 3.56
2057 10067 4.037446 ACGTTGTAGACAAACATGGCAATT 59.963 37.500 0.00 0.00 37.63 2.32
2058 10068 4.981674 CGTTGTAGACAAACATGGCAATTT 59.018 37.500 0.00 0.00 37.63 1.82
2059 10069 5.461737 CGTTGTAGACAAACATGGCAATTTT 59.538 36.000 0.00 0.00 37.63 1.82
2060 10070 6.345723 CGTTGTAGACAAACATGGCAATTTTC 60.346 38.462 0.00 0.00 37.63 2.29
2061 10071 6.403866 TGTAGACAAACATGGCAATTTTCT 57.596 33.333 0.00 4.78 0.00 2.52
2062 10072 6.215121 TGTAGACAAACATGGCAATTTTCTG 58.785 36.000 0.00 0.00 0.00 3.02
2063 10073 5.534207 AGACAAACATGGCAATTTTCTGA 57.466 34.783 0.00 0.00 0.00 3.27
2064 10074 5.291971 AGACAAACATGGCAATTTTCTGAC 58.708 37.500 0.00 0.00 0.00 3.51
2065 10075 5.021033 ACAAACATGGCAATTTTCTGACA 57.979 34.783 0.00 0.00 39.14 3.58
2066 10076 5.426504 ACAAACATGGCAATTTTCTGACAA 58.573 33.333 0.00 0.00 38.03 3.18
2067 10077 5.879223 ACAAACATGGCAATTTTCTGACAAA 59.121 32.000 0.00 0.00 38.03 2.83
2068 10078 6.373774 ACAAACATGGCAATTTTCTGACAAAA 59.626 30.769 0.00 0.00 38.03 2.44
2069 10079 6.998968 AACATGGCAATTTTCTGACAAAAA 57.001 29.167 0.00 0.00 38.03 1.94
2088 10098 5.592104 AAAAATCGACCTGGAACAAAGTT 57.408 34.783 0.00 0.00 38.70 2.66
2089 10099 4.568152 AAATCGACCTGGAACAAAGTTG 57.432 40.909 0.00 0.00 38.70 3.16
2090 10100 1.305201 TCGACCTGGAACAAAGTTGC 58.695 50.000 0.00 0.00 38.70 4.17
2091 10101 0.310854 CGACCTGGAACAAAGTTGCC 59.689 55.000 0.00 0.00 38.70 4.52
2092 10102 1.398692 GACCTGGAACAAAGTTGCCA 58.601 50.000 0.00 0.00 38.70 4.92
2093 10103 1.963515 GACCTGGAACAAAGTTGCCAT 59.036 47.619 0.00 0.00 38.70 4.40
2094 10104 1.688197 ACCTGGAACAAAGTTGCCATG 59.312 47.619 0.00 0.00 38.70 3.66
2095 10105 1.688197 CCTGGAACAAAGTTGCCATGT 59.312 47.619 0.00 0.00 38.70 3.21
2096 10106 2.546373 CCTGGAACAAAGTTGCCATGTG 60.546 50.000 0.00 0.00 38.70 3.21
2097 10107 2.101249 CTGGAACAAAGTTGCCATGTGT 59.899 45.455 0.00 0.00 38.70 3.72
2098 10108 2.100584 TGGAACAAAGTTGCCATGTGTC 59.899 45.455 0.00 0.00 31.92 3.67
2099 10109 2.100584 GGAACAAAGTTGCCATGTGTCA 59.899 45.455 0.00 0.00 0.00 3.58
2100 10110 3.430098 GGAACAAAGTTGCCATGTGTCAA 60.430 43.478 0.00 0.00 0.00 3.18
2101 10111 3.163630 ACAAAGTTGCCATGTGTCAAC 57.836 42.857 12.18 12.18 41.97 3.18
2102 10112 2.495270 ACAAAGTTGCCATGTGTCAACA 59.505 40.909 18.59 0.00 43.55 3.33
2103 10113 3.056250 ACAAAGTTGCCATGTGTCAACAA 60.056 39.130 18.59 1.63 43.55 2.83
2104 10114 2.869233 AGTTGCCATGTGTCAACAAC 57.131 45.000 18.59 10.97 43.55 3.32
2105 10115 2.378038 AGTTGCCATGTGTCAACAACT 58.622 42.857 18.59 12.48 44.47 3.16
2106 10116 3.550820 AGTTGCCATGTGTCAACAACTA 58.449 40.909 18.59 0.00 46.66 2.24
2107 10117 3.951037 AGTTGCCATGTGTCAACAACTAA 59.049 39.130 18.59 0.00 46.66 2.24
2108 10118 4.400884 AGTTGCCATGTGTCAACAACTAAA 59.599 37.500 18.59 0.00 46.66 1.85
2109 10119 4.566545 TGCCATGTGTCAACAACTAAAG 57.433 40.909 0.00 0.00 40.46 1.85
2110 10120 3.951037 TGCCATGTGTCAACAACTAAAGT 59.049 39.130 0.00 0.00 40.46 2.66
2111 10121 4.400884 TGCCATGTGTCAACAACTAAAGTT 59.599 37.500 0.00 0.00 40.46 2.66
2122 10132 3.290948 AACTAAAGTTGCCACCTCACA 57.709 42.857 0.00 0.00 36.80 3.58
2123 10133 2.851195 ACTAAAGTTGCCACCTCACAG 58.149 47.619 0.00 0.00 0.00 3.66
2124 10134 1.537202 CTAAAGTTGCCACCTCACAGC 59.463 52.381 0.00 0.00 0.00 4.40
2125 10135 0.395586 AAAGTTGCCACCTCACAGCA 60.396 50.000 0.00 0.00 33.97 4.41
2126 10136 0.395586 AAGTTGCCACCTCACAGCAA 60.396 50.000 0.00 0.00 43.83 3.91
2127 10137 3.840437 TTGCCACCTCACAGCAAC 58.160 55.556 0.00 0.00 41.35 4.17
2128 10138 1.227102 TTGCCACCTCACAGCAACT 59.773 52.632 0.00 0.00 41.35 3.16
2129 10139 0.472044 TTGCCACCTCACAGCAACTA 59.528 50.000 0.00 0.00 41.35 2.24
2130 10140 0.472044 TGCCACCTCACAGCAACTAA 59.528 50.000 0.00 0.00 32.56 2.24
2131 10141 1.133945 TGCCACCTCACAGCAACTAAA 60.134 47.619 0.00 0.00 32.56 1.85
2132 10142 1.537202 GCCACCTCACAGCAACTAAAG 59.463 52.381 0.00 0.00 0.00 1.85
2133 10143 2.851195 CCACCTCACAGCAACTAAAGT 58.149 47.619 0.00 0.00 0.00 2.66
2134 10144 3.214328 CCACCTCACAGCAACTAAAGTT 58.786 45.455 0.00 0.00 39.12 2.66
2162 10172 3.552604 AAAAACGTTCGGGATGACATG 57.447 42.857 0.00 0.00 0.00 3.21
2163 10173 0.802494 AAACGTTCGGGATGACATGC 59.198 50.000 0.00 0.00 0.00 4.06
2164 10174 0.036388 AACGTTCGGGATGACATGCT 60.036 50.000 6.91 0.00 0.00 3.79
2165 10175 0.036388 ACGTTCGGGATGACATGCTT 60.036 50.000 6.91 0.00 0.00 3.91
2166 10176 1.206132 ACGTTCGGGATGACATGCTTA 59.794 47.619 6.91 0.00 0.00 3.09
2167 10177 2.276201 CGTTCGGGATGACATGCTTAA 58.724 47.619 6.91 0.00 0.00 1.85
2168 10178 2.675844 CGTTCGGGATGACATGCTTAAA 59.324 45.455 6.91 0.00 0.00 1.52
2169 10179 3.312421 CGTTCGGGATGACATGCTTAAAT 59.688 43.478 6.91 0.00 0.00 1.40
2170 10180 4.201910 CGTTCGGGATGACATGCTTAAATT 60.202 41.667 6.91 0.00 0.00 1.82
2171 10181 5.273944 GTTCGGGATGACATGCTTAAATTC 58.726 41.667 6.91 0.00 0.00 2.17
2172 10182 3.882888 TCGGGATGACATGCTTAAATTCC 59.117 43.478 6.91 0.00 0.00 3.01
2173 10183 3.303990 CGGGATGACATGCTTAAATTCCG 60.304 47.826 6.91 0.00 0.00 4.30
2174 10184 3.882888 GGGATGACATGCTTAAATTCCGA 59.117 43.478 6.91 0.00 0.00 4.55
2175 10185 4.338118 GGGATGACATGCTTAAATTCCGAA 59.662 41.667 6.91 0.00 0.00 4.30
2176 10186 5.273944 GGATGACATGCTTAAATTCCGAAC 58.726 41.667 0.00 0.00 0.00 3.95
2177 10187 5.163663 GGATGACATGCTTAAATTCCGAACA 60.164 40.000 0.00 0.00 0.00 3.18
2178 10188 5.895636 TGACATGCTTAAATTCCGAACAT 57.104 34.783 0.00 0.00 0.00 2.71
2179 10189 6.266168 TGACATGCTTAAATTCCGAACATT 57.734 33.333 0.00 0.00 0.00 2.71
2180 10190 6.321717 TGACATGCTTAAATTCCGAACATTC 58.678 36.000 0.00 0.00 0.00 2.67
2196 10206 7.061752 CGAACATTCGGGATTTATCTATTCC 57.938 40.000 6.11 0.00 46.30 3.01
2197 10207 6.183360 CGAACATTCGGGATTTATCTATTCCG 60.183 42.308 6.11 0.00 46.30 4.30
2198 10208 6.354794 ACATTCGGGATTTATCTATTCCGA 57.645 37.500 2.00 2.00 43.73 4.55
2246 10256 7.600960 ACGGGTTACTTGTTCTTTTTGTTTTA 58.399 30.769 0.00 0.00 0.00 1.52
2247 10257 8.252417 ACGGGTTACTTGTTCTTTTTGTTTTAT 58.748 29.630 0.00 0.00 0.00 1.40
2277 10287 0.537143 GCATTGTGGTCCAGTGTCCA 60.537 55.000 0.00 0.88 33.55 4.02
2451 10461 3.323403 GCTGATTACCTACCAGATGAGCT 59.677 47.826 0.00 0.00 0.00 4.09
2580 10591 7.394016 TGAAACTATCCTGCTTATGAACTTGA 58.606 34.615 0.00 0.00 0.00 3.02
2601 10612 2.221169 TGAGATTGCCGACAATATGGC 58.779 47.619 0.00 0.00 46.59 4.40
2609 10620 2.355197 CCGACAATATGGCACTTGACA 58.645 47.619 16.09 0.00 37.54 3.58
2610 10621 2.746904 CCGACAATATGGCACTTGACAA 59.253 45.455 16.09 0.00 36.16 3.18
2611 10622 3.426159 CCGACAATATGGCACTTGACAAC 60.426 47.826 16.09 6.01 36.16 3.32
2612 10623 3.426159 CGACAATATGGCACTTGACAACC 60.426 47.826 16.09 0.00 36.16 3.77
2613 10624 2.487762 ACAATATGGCACTTGACAACCG 59.512 45.455 16.09 0.00 36.16 4.44
2614 10625 2.746904 CAATATGGCACTTGACAACCGA 59.253 45.455 5.88 0.00 36.16 4.69
2615 10626 2.779755 TATGGCACTTGACAACCGAT 57.220 45.000 0.00 0.00 36.16 4.18
2616 10627 1.167851 ATGGCACTTGACAACCGATG 58.832 50.000 0.00 0.00 36.16 3.84
2617 10628 1.210155 GGCACTTGACAACCGATGC 59.790 57.895 0.00 0.00 0.00 3.91
2618 10629 1.514678 GGCACTTGACAACCGATGCA 61.515 55.000 0.00 0.00 34.73 3.96
2619 10630 0.110056 GCACTTGACAACCGATGCAG 60.110 55.000 0.00 0.00 33.27 4.41
2620 10631 0.110056 CACTTGACAACCGATGCAGC 60.110 55.000 0.00 0.00 0.00 5.25
2621 10632 0.250467 ACTTGACAACCGATGCAGCT 60.250 50.000 0.00 0.00 0.00 4.24
2622 10633 0.877071 CTTGACAACCGATGCAGCTT 59.123 50.000 0.00 0.00 0.00 3.74
2623 10634 0.592637 TTGACAACCGATGCAGCTTG 59.407 50.000 0.00 0.88 0.00 4.01
2624 10635 0.250252 TGACAACCGATGCAGCTTGA 60.250 50.000 10.51 0.00 0.00 3.02
2625 10636 0.874390 GACAACCGATGCAGCTTGAA 59.126 50.000 10.51 0.00 0.00 2.69
2626 10637 1.266718 GACAACCGATGCAGCTTGAAA 59.733 47.619 10.51 0.00 0.00 2.69
2627 10638 1.680735 ACAACCGATGCAGCTTGAAAA 59.319 42.857 10.51 0.00 0.00 2.29
2628 10639 2.053627 CAACCGATGCAGCTTGAAAAC 58.946 47.619 0.00 0.00 0.00 2.43
2629 10640 1.609208 ACCGATGCAGCTTGAAAACT 58.391 45.000 0.00 0.00 0.00 2.66
2630 10641 1.267806 ACCGATGCAGCTTGAAAACTG 59.732 47.619 0.00 0.00 36.96 3.16
2631 10642 1.267806 CCGATGCAGCTTGAAAACTGT 59.732 47.619 0.00 0.00 36.26 3.55
2632 10643 2.578495 CGATGCAGCTTGAAAACTGTC 58.422 47.619 0.00 0.00 36.26 3.51
2633 10644 2.225019 CGATGCAGCTTGAAAACTGTCT 59.775 45.455 0.00 0.00 36.26 3.41
2634 10645 3.304257 CGATGCAGCTTGAAAACTGTCTT 60.304 43.478 0.00 0.00 36.26 3.01
2635 10646 3.425577 TGCAGCTTGAAAACTGTCTTG 57.574 42.857 0.00 0.00 36.26 3.02
2636 10647 2.122564 GCAGCTTGAAAACTGTCTTGC 58.877 47.619 0.00 0.00 36.26 4.01
2637 10648 2.223665 GCAGCTTGAAAACTGTCTTGCT 60.224 45.455 0.00 0.00 36.26 3.91
2638 10649 3.736126 GCAGCTTGAAAACTGTCTTGCTT 60.736 43.478 0.00 0.00 36.26 3.91
2639 10650 3.795101 CAGCTTGAAAACTGTCTTGCTTG 59.205 43.478 0.00 0.00 0.00 4.01
2640 10651 3.445096 AGCTTGAAAACTGTCTTGCTTGT 59.555 39.130 0.00 0.00 0.00 3.16
2641 10652 3.549070 GCTTGAAAACTGTCTTGCTTGTG 59.451 43.478 0.00 0.00 0.00 3.33
2642 10653 4.675146 GCTTGAAAACTGTCTTGCTTGTGA 60.675 41.667 0.00 0.00 0.00 3.58
2643 10654 5.384063 TTGAAAACTGTCTTGCTTGTGAA 57.616 34.783 0.00 0.00 0.00 3.18
2644 10655 4.732784 TGAAAACTGTCTTGCTTGTGAAC 58.267 39.130 0.00 0.00 0.00 3.18
2645 10656 4.458989 TGAAAACTGTCTTGCTTGTGAACT 59.541 37.500 0.00 0.00 0.00 3.01
2646 10657 5.048083 TGAAAACTGTCTTGCTTGTGAACTT 60.048 36.000 0.00 0.00 0.00 2.66
2647 10658 4.361451 AACTGTCTTGCTTGTGAACTTG 57.639 40.909 0.00 0.00 0.00 3.16
2648 10659 3.347216 ACTGTCTTGCTTGTGAACTTGT 58.653 40.909 0.00 0.00 0.00 3.16
2649 10660 3.127548 ACTGTCTTGCTTGTGAACTTGTG 59.872 43.478 0.00 0.00 0.00 3.33
2650 10661 3.342719 TGTCTTGCTTGTGAACTTGTGA 58.657 40.909 0.00 0.00 0.00 3.58
2651 10662 3.947196 TGTCTTGCTTGTGAACTTGTGAT 59.053 39.130 0.00 0.00 0.00 3.06
2652 10663 5.122519 TGTCTTGCTTGTGAACTTGTGATA 58.877 37.500 0.00 0.00 0.00 2.15
2653 10664 5.007626 TGTCTTGCTTGTGAACTTGTGATAC 59.992 40.000 0.00 0.00 0.00 2.24
2654 10665 5.237344 GTCTTGCTTGTGAACTTGTGATACT 59.763 40.000 0.00 0.00 0.00 2.12
2655 10666 5.822519 TCTTGCTTGTGAACTTGTGATACTT 59.177 36.000 0.00 0.00 0.00 2.24
2656 10667 5.673337 TGCTTGTGAACTTGTGATACTTC 57.327 39.130 0.00 0.00 0.00 3.01
2657 10668 5.122519 TGCTTGTGAACTTGTGATACTTCA 58.877 37.500 0.00 0.00 0.00 3.02
2658 10669 5.588246 TGCTTGTGAACTTGTGATACTTCAA 59.412 36.000 0.00 0.00 32.48 2.69
2659 10670 6.138761 GCTTGTGAACTTGTGATACTTCAAG 58.861 40.000 0.00 0.00 44.29 3.02
2660 10671 5.673337 TGTGAACTTGTGATACTTCAAGC 57.327 39.130 5.06 0.00 43.05 4.01
2661 10672 5.122519 TGTGAACTTGTGATACTTCAAGCA 58.877 37.500 5.06 0.00 43.05 3.91
2662 10673 5.588246 TGTGAACTTGTGATACTTCAAGCAA 59.412 36.000 5.06 0.00 43.05 3.91
2663 10674 6.262944 TGTGAACTTGTGATACTTCAAGCAAT 59.737 34.615 5.06 0.00 43.05 3.56
2664 10675 7.443879 TGTGAACTTGTGATACTTCAAGCAATA 59.556 33.333 5.06 0.00 43.05 1.90
2665 10676 7.746475 GTGAACTTGTGATACTTCAAGCAATAC 59.254 37.037 5.06 0.00 43.05 1.89
2666 10677 7.443879 TGAACTTGTGATACTTCAAGCAATACA 59.556 33.333 5.06 0.00 43.05 2.29
2667 10678 7.928307 ACTTGTGATACTTCAAGCAATACAT 57.072 32.000 5.06 0.00 43.05 2.29
2795 10873 4.900635 ATCAACGCTGTTTCAGTTCTTT 57.099 36.364 0.00 0.00 33.43 2.52
2858 10936 7.348537 AGCCTCTATTTTTAATGTACTCCCTCT 59.651 37.037 0.00 0.00 0.00 3.69
2901 10979 7.063780 CGCTGATTTTTGCATAAATTTTCCTCT 59.936 33.333 15.04 0.00 0.00 3.69
3294 11372 3.674997 TGCTCAACCTTCCATAAGTCAC 58.325 45.455 0.00 0.00 0.00 3.67
3458 11536 5.474532 TGCAGCTGAGATTTAAGTTTCATGT 59.525 36.000 20.43 0.00 0.00 3.21
3475 11553 7.763985 AGTTTCATGTTTAAGGTTTCAAACAGG 59.236 33.333 1.93 5.71 45.09 4.00
3690 11768 8.765044 TTTTCAATGAAATGAAACGCAAAATC 57.235 26.923 9.41 0.00 46.06 2.17
3691 11769 7.712264 TTCAATGAAATGAAACGCAAAATCT 57.288 28.000 0.00 0.00 36.42 2.40
3776 11855 5.050837 GGTGTTTCAAGTCATGCATTGTTTC 60.051 40.000 0.00 0.00 0.00 2.78
5062 13143 7.497909 TCTTTGGTAAATGCATACCTTACTAGC 59.502 37.037 17.55 4.55 44.72 3.42
5213 13294 2.565834 TGGTGACCTTAGAGTGCTAACC 59.434 50.000 2.11 0.00 33.24 2.85
5219 13300 1.918609 CTTAGAGTGCTAACCGCGAAC 59.081 52.381 8.23 0.00 43.27 3.95
5368 13449 9.642343 AGATGATATTTATTAGGCATGCATGAT 57.358 29.630 30.64 17.52 0.00 2.45
5377 13458 2.621998 AGGCATGCATGATTCAAGCTAC 59.378 45.455 30.64 7.92 0.00 3.58
5599 13683 8.274322 TCCAGCATTTCCTTCTATAAATTGAGA 58.726 33.333 0.00 0.00 0.00 3.27
5733 13817 7.747888 TGATGTACCTTCGTAATGACAATTTG 58.252 34.615 0.00 0.00 0.00 2.32
5762 13847 7.279313 TGTGTGAGTAACTTTTTACTGTTCCTC 59.721 37.037 1.81 0.00 46.67 3.71
6056 14141 7.386299 CCTGGTAGATTTGATAGACATGTAAGC 59.614 40.741 0.00 0.00 0.00 3.09
6069 14154 6.998802 AGACATGTAAGCTTTCTTGAGTAGT 58.001 36.000 20.87 3.24 33.85 2.73
6193 14279 4.640201 TCATTTAGTTCTGCTGGTATTGGC 59.360 41.667 0.00 0.00 0.00 4.52
6298 14384 6.557110 CAGTGATGTGAATGTCAATGCAATA 58.443 36.000 0.00 0.00 0.00 1.90
6333 14419 0.324275 GGCTTTAATGGGGCTGGTGA 60.324 55.000 0.00 0.00 0.00 4.02
6418 14504 5.566032 CGTGTGGACTATGAGGTGTTTCTAA 60.566 44.000 0.00 0.00 0.00 2.10
6470 14556 5.105595 GCTGGATTCCTATTCTTTTTGCTGT 60.106 40.000 3.95 0.00 0.00 4.40
6527 14621 1.740585 TGGCATTCCACGTATTTTCCG 59.259 47.619 0.00 0.00 37.47 4.30
6903 14998 8.621532 AGAAGATGTAAATTTCTGCACTAACA 57.378 30.769 0.00 0.00 30.41 2.41
7218 15313 3.923461 GCTCGCTCAGTATATGGTGATTC 59.077 47.826 0.00 0.00 0.00 2.52
7240 15335 9.780413 GATTCTTTCATCCACTTAGATTGTTTC 57.220 33.333 0.00 0.00 0.00 2.78
7400 15495 6.764308 ACATTTCCACTGGTCTTATGATTG 57.236 37.500 0.00 0.00 0.00 2.67
7508 15603 0.940126 CGAGCTATTGGCCACATCAC 59.060 55.000 3.88 0.00 43.05 3.06
7534 15629 5.404395 ACCTCTCTTAAACTCCACTTACCT 58.596 41.667 0.00 0.00 0.00 3.08
7814 15910 6.176183 AGATCAACAAAGTAGTTCATCCCTG 58.824 40.000 0.00 0.00 30.34 4.45
7889 15985 6.785191 AGACATATTACCTTTTGTTGCATCG 58.215 36.000 0.00 0.00 0.00 3.84
8031 16127 8.627403 GCAGGAAATTGAAAGATGAGATTATCA 58.373 33.333 0.00 0.00 43.70 2.15
8052 16148 1.999648 AGGGTGTTGCATGATTGTGT 58.000 45.000 0.00 0.00 0.00 3.72
8117 16213 3.165071 CCTTTTACCCAACATGAAGCCT 58.835 45.455 0.00 0.00 0.00 4.58
8123 16219 1.004044 CCCAACATGAAGCCTCTGAGT 59.996 52.381 0.00 0.00 0.00 3.41
8126 16222 2.486472 ACATGAAGCCTCTGAGTTGG 57.514 50.000 0.00 0.00 0.00 3.77
8352 16449 7.544217 GGTTTTCTTTTCAGAAACTTGCTGTTA 59.456 33.333 0.00 0.00 46.71 2.41
8389 16491 7.014905 GTCCTGTCTTTTTAGTTTTTACCCCAT 59.985 37.037 0.00 0.00 0.00 4.00
8433 16535 7.151976 GGTGTTGTAAAAGGATGTAAGCAAAT 58.848 34.615 0.00 0.00 0.00 2.32
8460 16563 5.487433 TCTGTGATTCGGCAATAGAAAAGA 58.513 37.500 0.00 0.00 0.00 2.52
8521 16624 0.834687 ACGGTTTCTACCCTGCCTGA 60.835 55.000 0.00 0.00 41.75 3.86
8532 16635 0.247460 CCTGCCTGATGTGAGTCGAA 59.753 55.000 0.00 0.00 0.00 3.71
8533 16636 1.354040 CTGCCTGATGTGAGTCGAAC 58.646 55.000 0.00 0.00 0.00 3.95
8593 16700 6.146347 GCGAAAAGATTGTAGTGAAGTTCTCT 59.854 38.462 11.88 11.88 0.00 3.10
8594 16701 7.620394 GCGAAAAGATTGTAGTGAAGTTCTCTC 60.620 40.741 10.62 4.58 0.00 3.20
8618 16725 4.942761 AAAAATGCAGAGGACACACATT 57.057 36.364 0.00 0.00 32.53 2.71
8719 16826 2.400911 GGTAAATACCCGGCAGTGC 58.599 57.895 6.55 6.55 40.53 4.40
8726 16833 2.175035 TACCCGGCAGTGCTACAACC 62.175 60.000 16.11 0.00 0.00 3.77
8766 16873 8.057742 CAGTTTAGTGCTAAAAGTTGCAAAATG 58.942 33.333 0.00 0.00 41.10 2.32
8790 16897 3.510719 TGTTTTGAGTGCTTGAACTTGC 58.489 40.909 0.00 0.00 0.00 4.01
8798 16905 0.663153 GCTTGAACTTGCGTGGAAGT 59.337 50.000 0.51 0.51 37.81 3.01
8820 16927 4.094294 GTGCAAATACGGTGCTATCTTTGA 59.906 41.667 0.00 0.00 42.69 2.69
8833 16940 6.527722 GTGCTATCTTTGAAATTGATTTGCGA 59.472 34.615 0.00 0.00 0.00 5.10
8836 16943 7.062138 GCTATCTTTGAAATTGATTTGCGAACA 59.938 33.333 0.00 0.00 0.00 3.18
8845 16952 9.862585 GAAATTGATTTGCGAACAACTTTTTAT 57.137 25.926 0.00 0.00 34.87 1.40
8846 16953 9.649024 AAATTGATTTGCGAACAACTTTTTATG 57.351 25.926 0.00 0.00 34.87 1.90
8847 16954 7.993821 TTGATTTGCGAACAACTTTTTATGA 57.006 28.000 0.00 0.00 34.87 2.15
8848 16955 7.388290 TGATTTGCGAACAACTTTTTATGAC 57.612 32.000 0.00 0.00 34.87 3.06
8849 16956 6.975197 TGATTTGCGAACAACTTTTTATGACA 59.025 30.769 0.00 0.00 34.87 3.58
8850 16957 6.561945 TTTGCGAACAACTTTTTATGACAC 57.438 33.333 0.00 0.00 34.87 3.67
8851 16958 4.602995 TGCGAACAACTTTTTATGACACC 58.397 39.130 0.00 0.00 0.00 4.16
8852 16959 4.336993 TGCGAACAACTTTTTATGACACCT 59.663 37.500 0.00 0.00 0.00 4.00
8853 16960 5.163602 TGCGAACAACTTTTTATGACACCTT 60.164 36.000 0.00 0.00 0.00 3.50
8854 16961 5.398416 GCGAACAACTTTTTATGACACCTTC 59.602 40.000 0.00 0.00 0.00 3.46
8855 16962 6.491394 CGAACAACTTTTTATGACACCTTCA 58.509 36.000 0.00 0.00 39.11 3.02
8857 16964 7.323656 CGAACAACTTTTTATGACACCTTCATC 59.676 37.037 0.00 0.00 41.53 2.92
8858 16965 6.981722 ACAACTTTTTATGACACCTTCATCC 58.018 36.000 0.00 0.00 41.53 3.51
8859 16966 6.777580 ACAACTTTTTATGACACCTTCATCCT 59.222 34.615 0.00 0.00 41.53 3.24
8860 16967 7.942341 ACAACTTTTTATGACACCTTCATCCTA 59.058 33.333 0.00 0.00 41.53 2.94
8861 16968 8.454106 CAACTTTTTATGACACCTTCATCCTAG 58.546 37.037 0.00 0.00 41.53 3.02
8862 16969 7.690256 ACTTTTTATGACACCTTCATCCTAGT 58.310 34.615 0.00 0.00 41.53 2.57
8863 16970 8.164070 ACTTTTTATGACACCTTCATCCTAGTT 58.836 33.333 0.00 0.00 41.53 2.24
8864 16971 8.934023 TTTTTATGACACCTTCATCCTAGTTT 57.066 30.769 0.00 0.00 41.53 2.66
8865 16972 7.921786 TTTATGACACCTTCATCCTAGTTTG 57.078 36.000 0.00 0.00 41.53 2.93
8866 16973 4.974645 TGACACCTTCATCCTAGTTTGT 57.025 40.909 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.203440 AGGAACATGTGGAGGGGTAGT 60.203 52.381 0.00 0.00 0.00 2.73
62 63 2.239400 CTACTAGTGATGGCGGATGGA 58.761 52.381 5.39 0.00 0.00 3.41
65 66 0.969894 GGCTACTAGTGATGGCGGAT 59.030 55.000 5.39 0.00 0.00 4.18
73 74 1.054406 GGGGGCATGGCTACTAGTGA 61.054 60.000 19.78 0.00 0.00 3.41
94 95 0.901827 TAGCTCCTCATTCGGCAACA 59.098 50.000 0.00 0.00 0.00 3.33
96 97 0.178068 GGTAGCTCCTCATTCGGCAA 59.822 55.000 0.00 0.00 0.00 4.52
102 103 5.685075 CGTTAGAAATGGGTAGCTCCTCATT 60.685 44.000 0.00 0.00 38.10 2.57
112 2615 1.137479 CTCCGGCGTTAGAAATGGGTA 59.863 52.381 6.01 0.00 0.00 3.69
113 2616 0.107848 CTCCGGCGTTAGAAATGGGT 60.108 55.000 6.01 0.00 0.00 4.51
114 2617 1.436983 GCTCCGGCGTTAGAAATGGG 61.437 60.000 6.01 0.00 0.00 4.00
115 2618 2.014594 GCTCCGGCGTTAGAAATGG 58.985 57.895 6.01 0.00 0.00 3.16
156 6889 0.736325 CTTCGCGTCTTGTCCGGATT 60.736 55.000 7.81 0.00 0.00 3.01
188 6921 2.072487 GCATCCAGAGGTAGCCCCA 61.072 63.158 0.00 0.00 34.66 4.96
208 6941 0.031111 TCCAACTCCTCCGGATCCAT 60.031 55.000 13.41 0.00 0.00 3.41
328 7076 1.478137 GATGTCTATGACGTCGGTGC 58.522 55.000 11.62 0.69 38.54 5.01
341 7089 0.727970 CTTCGTCGTCGGAGATGTCT 59.272 55.000 4.17 0.00 44.73 3.41
386 7148 3.717400 TCCATACAAAGCGTGCAAAAA 57.283 38.095 0.00 0.00 0.00 1.94
394 7156 4.073293 ACCCTTAGATCCATACAAAGCG 57.927 45.455 0.00 0.00 0.00 4.68
424 7186 1.465794 ACTCTACACCCGAGCTTCTC 58.534 55.000 0.00 0.00 31.71 2.87
426 7188 1.065851 GCTACTCTACACCCGAGCTTC 59.934 57.143 0.00 0.00 31.71 3.86
429 7191 0.815734 TTGCTACTCTACACCCGAGC 59.184 55.000 0.00 0.00 31.71 5.03
435 8099 5.701290 ACACCTCAAATTTGCTACTCTACAC 59.299 40.000 13.54 0.00 0.00 2.90
496 8160 2.125673 ATCCCTCAAACGTCCGCG 60.126 61.111 0.00 0.00 44.93 6.46
515 8179 2.659610 GCTGGACTCGGCAACTCT 59.340 61.111 0.00 0.00 44.43 3.24
530 8194 4.884744 AGACACATAAGATCGTCTACAGCT 59.115 41.667 0.00 0.00 36.97 4.24
580 8244 5.115480 TCTATCATGCACGCATACAGAAAA 58.885 37.500 3.80 0.00 34.91 2.29
600 8264 4.813809 AGCAAGGGATCAGATTCTCTCTA 58.186 43.478 0.00 0.00 31.13 2.43
611 8275 1.704628 TCCTGTTCAAGCAAGGGATCA 59.295 47.619 0.00 0.00 0.00 2.92
613 8277 1.707427 ACTCCTGTTCAAGCAAGGGAT 59.293 47.619 0.00 0.00 0.00 3.85
628 8292 4.400961 GCTCGCCTTGGCACTCCT 62.401 66.667 12.45 0.00 0.00 3.69
1531 9539 1.541588 GCACCCATTTGAGTTGACTCC 59.458 52.381 8.56 0.00 42.20 3.85
1560 9568 4.298332 AGAAACACATTTTGCGAATGTCC 58.702 39.130 13.49 5.90 38.69 4.02
1567 9575 2.539274 CCACCAAGAAACACATTTTGCG 59.461 45.455 0.00 0.00 0.00 4.85
1569 9577 3.556775 CAGCCACCAAGAAACACATTTTG 59.443 43.478 0.00 0.00 0.00 2.44
1636 9644 4.112716 TGCGACCGTGTCATTAGATAAA 57.887 40.909 5.15 0.00 32.09 1.40
1640 9648 2.094442 TCATTGCGACCGTGTCATTAGA 60.094 45.455 5.15 0.00 32.09 2.10
1646 9654 0.865769 AACTTCATTGCGACCGTGTC 59.134 50.000 0.00 0.00 0.00 3.67
1771 9781 7.069331 TGGTCCAAAACTTGAACTAATGAATGT 59.931 33.333 0.00 0.00 0.00 2.71
1819 9829 5.944007 AGCTACAAATTTCACGGTTTCCTAT 59.056 36.000 0.00 0.00 0.00 2.57
1873 9883 6.468333 TGACAGCGTTATTTAGGTACCATA 57.532 37.500 15.94 0.00 0.00 2.74
1889 9899 2.860136 ACATCACGTATCAATGACAGCG 59.140 45.455 0.00 0.00 0.00 5.18
1960 9970 2.094338 ACGTTCGGGACTTATTGAGGTC 60.094 50.000 0.00 0.00 0.00 3.85
1961 9971 1.897802 ACGTTCGGGACTTATTGAGGT 59.102 47.619 0.00 0.00 0.00 3.85
1962 9972 2.667473 ACGTTCGGGACTTATTGAGG 57.333 50.000 0.00 0.00 0.00 3.86
1963 9973 2.597305 CGAACGTTCGGGACTTATTGAG 59.403 50.000 36.53 9.39 46.30 3.02
1964 9974 2.598589 CGAACGTTCGGGACTTATTGA 58.401 47.619 36.53 0.00 46.30 2.57
1976 9986 3.542310 GCATGCTTAAATTCCGAACGTTC 59.458 43.478 18.47 18.47 0.00 3.95
1977 9987 3.190535 AGCATGCTTAAATTCCGAACGTT 59.809 39.130 16.30 0.00 0.00 3.99
1978 9988 2.747446 AGCATGCTTAAATTCCGAACGT 59.253 40.909 16.30 0.00 0.00 3.99
1979 9989 3.405170 AGCATGCTTAAATTCCGAACG 57.595 42.857 16.30 0.00 0.00 3.95
1980 9990 5.915196 GGATTAGCATGCTTAAATTCCGAAC 59.085 40.000 28.02 7.09 0.00 3.95
1981 9991 5.277779 CGGATTAGCATGCTTAAATTCCGAA 60.278 40.000 30.61 17.43 38.00 4.30
1982 9992 4.213270 CGGATTAGCATGCTTAAATTCCGA 59.787 41.667 30.61 10.73 38.00 4.55
1983 9993 4.213270 TCGGATTAGCATGCTTAAATTCCG 59.787 41.667 29.49 29.49 37.23 4.30
1984 9994 5.689383 TCGGATTAGCATGCTTAAATTCC 57.311 39.130 28.02 20.13 0.00 3.01
1985 9995 6.729187 AGTTCGGATTAGCATGCTTAAATTC 58.271 36.000 28.02 17.66 0.00 2.17
1986 9996 6.543831 AGAGTTCGGATTAGCATGCTTAAATT 59.456 34.615 28.02 4.51 0.00 1.82
1987 9997 6.058183 AGAGTTCGGATTAGCATGCTTAAAT 58.942 36.000 28.02 20.20 0.00 1.40
1988 9998 5.428253 AGAGTTCGGATTAGCATGCTTAAA 58.572 37.500 28.02 15.85 0.00 1.52
1989 9999 5.023533 AGAGTTCGGATTAGCATGCTTAA 57.976 39.130 28.02 17.49 0.00 1.85
1990 10000 4.672587 AGAGTTCGGATTAGCATGCTTA 57.327 40.909 28.02 18.49 0.00 3.09
1991 10001 3.550437 AGAGTTCGGATTAGCATGCTT 57.450 42.857 28.02 8.95 0.00 3.91
1992 10002 3.550437 AAGAGTTCGGATTAGCATGCT 57.450 42.857 25.99 25.99 0.00 3.79
1993 10003 4.094887 TGAAAAGAGTTCGGATTAGCATGC 59.905 41.667 10.51 10.51 0.00 4.06
1994 10004 5.801350 TGAAAAGAGTTCGGATTAGCATG 57.199 39.130 0.00 0.00 0.00 4.06
1995 10005 5.297776 CCATGAAAAGAGTTCGGATTAGCAT 59.702 40.000 0.00 0.00 0.00 3.79
1996 10006 4.635765 CCATGAAAAGAGTTCGGATTAGCA 59.364 41.667 0.00 0.00 0.00 3.49
1997 10007 4.496507 GCCATGAAAAGAGTTCGGATTAGC 60.497 45.833 0.00 0.00 0.00 3.09
1998 10008 4.635765 TGCCATGAAAAGAGTTCGGATTAG 59.364 41.667 0.00 0.00 0.00 1.73
1999 10009 4.584874 TGCCATGAAAAGAGTTCGGATTA 58.415 39.130 0.00 0.00 0.00 1.75
2000 10010 3.420893 TGCCATGAAAAGAGTTCGGATT 58.579 40.909 0.00 0.00 0.00 3.01
2001 10011 3.071874 TGCCATGAAAAGAGTTCGGAT 57.928 42.857 0.00 0.00 0.00 4.18
2002 10012 2.552315 GTTGCCATGAAAAGAGTTCGGA 59.448 45.455 0.00 0.00 0.00 4.55
2003 10013 2.554032 AGTTGCCATGAAAAGAGTTCGG 59.446 45.455 0.00 0.00 0.00 4.30
2004 10014 3.904136 AGTTGCCATGAAAAGAGTTCG 57.096 42.857 0.00 0.00 0.00 3.95
2005 10015 7.867403 TGATTAAAGTTGCCATGAAAAGAGTTC 59.133 33.333 0.00 0.00 0.00 3.01
2006 10016 7.725251 TGATTAAAGTTGCCATGAAAAGAGTT 58.275 30.769 0.00 0.00 0.00 3.01
2007 10017 7.288810 TGATTAAAGTTGCCATGAAAAGAGT 57.711 32.000 0.00 0.00 0.00 3.24
2008 10018 8.084073 TCTTGATTAAAGTTGCCATGAAAAGAG 58.916 33.333 0.00 0.00 37.18 2.85
2009 10019 7.867403 GTCTTGATTAAAGTTGCCATGAAAAGA 59.133 33.333 0.00 0.00 37.18 2.52
2010 10020 7.148918 CGTCTTGATTAAAGTTGCCATGAAAAG 60.149 37.037 0.00 0.00 37.18 2.27
2011 10021 6.640499 CGTCTTGATTAAAGTTGCCATGAAAA 59.360 34.615 0.00 0.00 37.18 2.29
2012 10022 6.148948 CGTCTTGATTAAAGTTGCCATGAAA 58.851 36.000 0.00 0.00 37.18 2.69
2013 10023 5.240623 ACGTCTTGATTAAAGTTGCCATGAA 59.759 36.000 0.00 0.00 37.18 2.57
2014 10024 4.759693 ACGTCTTGATTAAAGTTGCCATGA 59.240 37.500 0.00 0.00 37.18 3.07
2015 10025 5.046910 ACGTCTTGATTAAAGTTGCCATG 57.953 39.130 0.00 0.00 37.18 3.66
2016 10026 5.009610 ACAACGTCTTGATTAAAGTTGCCAT 59.990 36.000 6.11 0.00 41.62 4.40
2017 10027 4.336993 ACAACGTCTTGATTAAAGTTGCCA 59.663 37.500 6.11 0.00 41.62 4.92
2018 10028 4.855531 ACAACGTCTTGATTAAAGTTGCC 58.144 39.130 6.11 0.00 41.62 4.52
2019 10029 6.790825 GTCTACAACGTCTTGATTAAAGTTGC 59.209 38.462 6.11 0.00 41.62 4.17
2020 10030 7.847487 TGTCTACAACGTCTTGATTAAAGTTG 58.153 34.615 4.81 4.81 42.99 3.16
2021 10031 8.428186 TTGTCTACAACGTCTTGATTAAAGTT 57.572 30.769 0.00 0.00 37.18 2.66
2022 10032 8.333186 GTTTGTCTACAACGTCTTGATTAAAGT 58.667 33.333 0.00 0.00 34.95 2.66
2023 10033 8.332464 TGTTTGTCTACAACGTCTTGATTAAAG 58.668 33.333 0.00 0.00 35.28 1.85
2024 10034 8.199176 TGTTTGTCTACAACGTCTTGATTAAA 57.801 30.769 0.00 0.00 35.28 1.52
2025 10035 7.773864 TGTTTGTCTACAACGTCTTGATTAA 57.226 32.000 0.00 0.00 35.28 1.40
2026 10036 7.095397 CCATGTTTGTCTACAACGTCTTGATTA 60.095 37.037 0.00 0.00 35.28 1.75
2027 10037 6.293407 CCATGTTTGTCTACAACGTCTTGATT 60.293 38.462 0.00 0.00 35.28 2.57
2028 10038 5.179368 CCATGTTTGTCTACAACGTCTTGAT 59.821 40.000 0.00 0.00 35.28 2.57
2029 10039 4.509970 CCATGTTTGTCTACAACGTCTTGA 59.490 41.667 0.00 0.00 35.28 3.02
2030 10040 4.772434 CCATGTTTGTCTACAACGTCTTG 58.228 43.478 0.00 0.00 35.28 3.02
2031 10041 3.250040 GCCATGTTTGTCTACAACGTCTT 59.750 43.478 0.00 0.00 35.28 3.01
2032 10042 2.806244 GCCATGTTTGTCTACAACGTCT 59.194 45.455 0.00 0.00 35.28 4.18
2033 10043 2.546368 TGCCATGTTTGTCTACAACGTC 59.454 45.455 0.00 0.00 35.28 4.34
2034 10044 2.566913 TGCCATGTTTGTCTACAACGT 58.433 42.857 0.00 0.00 35.28 3.99
2035 10045 3.617540 TTGCCATGTTTGTCTACAACG 57.382 42.857 0.00 0.00 35.28 4.10
2036 10046 6.701400 AGAAAATTGCCATGTTTGTCTACAAC 59.299 34.615 0.00 0.00 35.28 3.32
2037 10047 6.700960 CAGAAAATTGCCATGTTTGTCTACAA 59.299 34.615 0.00 0.00 0.00 2.41
2038 10048 6.040278 TCAGAAAATTGCCATGTTTGTCTACA 59.960 34.615 0.00 0.00 0.00 2.74
2039 10049 6.363357 GTCAGAAAATTGCCATGTTTGTCTAC 59.637 38.462 0.00 0.00 0.00 2.59
2040 10050 6.040278 TGTCAGAAAATTGCCATGTTTGTCTA 59.960 34.615 0.00 0.00 0.00 2.59
2041 10051 5.163426 TGTCAGAAAATTGCCATGTTTGTCT 60.163 36.000 0.00 0.00 0.00 3.41
2042 10052 5.049167 TGTCAGAAAATTGCCATGTTTGTC 58.951 37.500 0.00 0.00 0.00 3.18
2043 10053 5.021033 TGTCAGAAAATTGCCATGTTTGT 57.979 34.783 0.00 0.00 0.00 2.83
2044 10054 5.987777 TTGTCAGAAAATTGCCATGTTTG 57.012 34.783 0.00 0.00 0.00 2.93
2045 10055 6.998968 TTTTGTCAGAAAATTGCCATGTTT 57.001 29.167 0.00 0.00 0.00 2.83
2046 10056 6.998968 TTTTTGTCAGAAAATTGCCATGTT 57.001 29.167 0.00 0.00 0.00 2.71
2066 10076 5.348164 CAACTTTGTTCCAGGTCGATTTTT 58.652 37.500 0.00 0.00 0.00 1.94
2067 10077 4.736464 GCAACTTTGTTCCAGGTCGATTTT 60.736 41.667 0.00 0.00 0.00 1.82
2068 10078 3.243401 GCAACTTTGTTCCAGGTCGATTT 60.243 43.478 0.00 0.00 0.00 2.17
2069 10079 2.293399 GCAACTTTGTTCCAGGTCGATT 59.707 45.455 0.00 0.00 0.00 3.34
2070 10080 1.880027 GCAACTTTGTTCCAGGTCGAT 59.120 47.619 0.00 0.00 0.00 3.59
2071 10081 1.305201 GCAACTTTGTTCCAGGTCGA 58.695 50.000 0.00 0.00 0.00 4.20
2072 10082 0.310854 GGCAACTTTGTTCCAGGTCG 59.689 55.000 0.00 0.00 0.00 4.79
2073 10083 1.398692 TGGCAACTTTGTTCCAGGTC 58.601 50.000 0.00 0.00 37.61 3.85
2074 10084 1.688197 CATGGCAACTTTGTTCCAGGT 59.312 47.619 0.00 0.00 37.61 4.00
2075 10085 1.688197 ACATGGCAACTTTGTTCCAGG 59.312 47.619 0.00 9.92 36.55 4.45
2076 10086 2.101249 ACACATGGCAACTTTGTTCCAG 59.899 45.455 0.00 0.00 32.41 3.86
2077 10087 2.100584 GACACATGGCAACTTTGTTCCA 59.899 45.455 0.00 0.00 32.41 3.53
2078 10088 2.100584 TGACACATGGCAACTTTGTTCC 59.899 45.455 0.00 0.00 32.41 3.62
2079 10089 3.435105 TGACACATGGCAACTTTGTTC 57.565 42.857 0.00 0.00 32.41 3.18
2080 10090 3.883830 TTGACACATGGCAACTTTGTT 57.116 38.095 0.00 0.00 38.31 2.83
2087 10097 4.400884 ACTTTAGTTGTTGACACATGGCAA 59.599 37.500 0.00 0.00 41.52 4.52
2088 10098 3.951037 ACTTTAGTTGTTGACACATGGCA 59.049 39.130 0.00 0.00 31.06 4.92
2089 10099 4.568152 ACTTTAGTTGTTGACACATGGC 57.432 40.909 0.00 0.00 31.06 4.40
2102 10112 3.214328 CTGTGAGGTGGCAACTTTAGTT 58.786 45.455 6.46 0.00 39.12 2.24
2103 10113 2.851195 CTGTGAGGTGGCAACTTTAGT 58.149 47.619 6.46 0.00 37.61 2.24
2104 10114 1.537202 GCTGTGAGGTGGCAACTTTAG 59.463 52.381 6.46 6.89 37.61 1.85
2105 10115 1.133945 TGCTGTGAGGTGGCAACTTTA 60.134 47.619 6.46 0.00 32.79 1.85
2106 10116 0.395586 TGCTGTGAGGTGGCAACTTT 60.396 50.000 6.46 0.00 32.79 2.66
2107 10117 0.395586 TTGCTGTGAGGTGGCAACTT 60.396 50.000 6.46 0.00 40.38 2.66
2108 10118 1.227102 TTGCTGTGAGGTGGCAACT 59.773 52.632 3.75 3.75 40.38 3.16
2109 10119 3.840437 TTGCTGTGAGGTGGCAAC 58.160 55.556 0.00 0.00 40.38 4.17
2110 10120 0.472044 TAGTTGCTGTGAGGTGGCAA 59.528 50.000 0.00 0.00 42.54 4.52
2111 10121 0.472044 TTAGTTGCTGTGAGGTGGCA 59.528 50.000 0.00 0.00 0.00 4.92
2112 10122 1.537202 CTTTAGTTGCTGTGAGGTGGC 59.463 52.381 0.00 0.00 0.00 5.01
2113 10123 2.851195 ACTTTAGTTGCTGTGAGGTGG 58.149 47.619 0.00 0.00 0.00 4.61
2142 10152 2.351350 GCATGTCATCCCGAACGTTTTT 60.351 45.455 0.46 0.00 0.00 1.94
2143 10153 1.199097 GCATGTCATCCCGAACGTTTT 59.801 47.619 0.46 0.00 0.00 2.43
2144 10154 0.802494 GCATGTCATCCCGAACGTTT 59.198 50.000 0.46 0.00 0.00 3.60
2145 10155 0.036388 AGCATGTCATCCCGAACGTT 60.036 50.000 0.00 0.00 0.00 3.99
2146 10156 0.036388 AAGCATGTCATCCCGAACGT 60.036 50.000 0.00 0.00 0.00 3.99
2147 10157 1.934589 TAAGCATGTCATCCCGAACG 58.065 50.000 0.00 0.00 0.00 3.95
2148 10158 4.900635 ATTTAAGCATGTCATCCCGAAC 57.099 40.909 0.00 0.00 0.00 3.95
2149 10159 4.338118 GGAATTTAAGCATGTCATCCCGAA 59.662 41.667 0.00 0.00 0.00 4.30
2150 10160 3.882888 GGAATTTAAGCATGTCATCCCGA 59.117 43.478 0.00 0.00 0.00 5.14
2151 10161 3.303990 CGGAATTTAAGCATGTCATCCCG 60.304 47.826 0.00 0.00 0.00 5.14
2152 10162 3.882888 TCGGAATTTAAGCATGTCATCCC 59.117 43.478 0.00 0.00 0.00 3.85
2153 10163 5.163663 TGTTCGGAATTTAAGCATGTCATCC 60.164 40.000 0.00 0.00 0.00 3.51
2154 10164 5.879237 TGTTCGGAATTTAAGCATGTCATC 58.121 37.500 0.00 0.00 0.00 2.92
2155 10165 5.895636 TGTTCGGAATTTAAGCATGTCAT 57.104 34.783 0.00 0.00 0.00 3.06
2156 10166 5.895636 ATGTTCGGAATTTAAGCATGTCA 57.104 34.783 0.00 0.00 0.00 3.58
2157 10167 5.452302 CGAATGTTCGGAATTTAAGCATGTC 59.548 40.000 7.24 0.00 46.30 3.06
2158 10168 5.331902 CGAATGTTCGGAATTTAAGCATGT 58.668 37.500 7.24 0.00 46.30 3.21
2159 10169 5.854835 CGAATGTTCGGAATTTAAGCATG 57.145 39.130 7.24 0.00 46.30 4.06
2173 10183 6.872020 TCGGAATAGATAAATCCCGAATGTTC 59.128 38.462 0.00 0.00 42.31 3.18
2174 10184 6.765403 TCGGAATAGATAAATCCCGAATGTT 58.235 36.000 0.00 0.00 42.31 2.71
2175 10185 6.354794 TCGGAATAGATAAATCCCGAATGT 57.645 37.500 0.00 0.00 42.31 2.71
2190 10200 9.573133 GCCATTCCAATTAATTATTCGGAATAG 57.427 33.333 21.33 17.62 40.41 1.73
2191 10201 9.083422 TGCCATTCCAATTAATTATTCGGAATA 57.917 29.630 21.33 6.35 40.41 1.75
2192 10202 7.961351 TGCCATTCCAATTAATTATTCGGAAT 58.039 30.769 18.26 18.26 42.53 3.01
2193 10203 7.286546 TCTGCCATTCCAATTAATTATTCGGAA 59.713 33.333 16.04 16.04 36.98 4.30
2194 10204 6.775142 TCTGCCATTCCAATTAATTATTCGGA 59.225 34.615 0.00 0.66 0.00 4.55
2195 10205 6.980593 TCTGCCATTCCAATTAATTATTCGG 58.019 36.000 0.00 0.00 0.00 4.30
2196 10206 8.755018 GTTTCTGCCATTCCAATTAATTATTCG 58.245 33.333 0.00 0.00 0.00 3.34
2197 10207 8.755018 CGTTTCTGCCATTCCAATTAATTATTC 58.245 33.333 0.00 0.00 0.00 1.75
2198 10208 7.710475 CCGTTTCTGCCATTCCAATTAATTATT 59.290 33.333 0.00 0.00 0.00 1.40
2199 10209 7.209475 CCGTTTCTGCCATTCCAATTAATTAT 58.791 34.615 0.00 0.00 0.00 1.28
2200 10210 6.406400 CCCGTTTCTGCCATTCCAATTAATTA 60.406 38.462 0.00 0.00 0.00 1.40
2201 10211 5.418676 CCGTTTCTGCCATTCCAATTAATT 58.581 37.500 0.00 0.00 0.00 1.40
2202 10212 4.141959 CCCGTTTCTGCCATTCCAATTAAT 60.142 41.667 0.00 0.00 0.00 1.40
2203 10213 3.194542 CCCGTTTCTGCCATTCCAATTAA 59.805 43.478 0.00 0.00 0.00 1.40
2204 10214 2.757868 CCCGTTTCTGCCATTCCAATTA 59.242 45.455 0.00 0.00 0.00 1.40
2205 10215 1.550072 CCCGTTTCTGCCATTCCAATT 59.450 47.619 0.00 0.00 0.00 2.32
2451 10461 1.891919 GTTGCTGAACGCCCAGACA 60.892 57.895 8.61 3.95 38.05 3.41
2601 10612 0.110056 GCTGCATCGGTTGTCAAGTG 60.110 55.000 0.00 0.00 0.00 3.16
2602 10613 0.250467 AGCTGCATCGGTTGTCAAGT 60.250 50.000 1.02 0.00 0.00 3.16
2603 10614 0.877071 AAGCTGCATCGGTTGTCAAG 59.123 50.000 1.02 0.00 0.00 3.02
2604 10615 0.592637 CAAGCTGCATCGGTTGTCAA 59.407 50.000 1.02 0.00 37.55 3.18
2605 10616 0.250252 TCAAGCTGCATCGGTTGTCA 60.250 50.000 15.05 0.00 41.68 3.58
2606 10617 0.874390 TTCAAGCTGCATCGGTTGTC 59.126 50.000 15.05 0.00 41.68 3.18
2607 10618 1.317613 TTTCAAGCTGCATCGGTTGT 58.682 45.000 15.05 0.00 41.68 3.32
2608 10619 2.053627 GTTTTCAAGCTGCATCGGTTG 58.946 47.619 10.68 10.68 42.18 3.77
2609 10620 1.956477 AGTTTTCAAGCTGCATCGGTT 59.044 42.857 1.02 0.00 0.00 4.44
2610 10621 1.267806 CAGTTTTCAAGCTGCATCGGT 59.732 47.619 1.02 0.00 30.59 4.69
2611 10622 1.267806 ACAGTTTTCAAGCTGCATCGG 59.732 47.619 1.02 0.00 40.41 4.18
2612 10623 2.225019 AGACAGTTTTCAAGCTGCATCG 59.775 45.455 1.02 0.00 40.41 3.84
2613 10624 3.911661 AGACAGTTTTCAAGCTGCATC 57.088 42.857 1.02 0.00 40.41 3.91
2614 10625 3.797865 GCAAGACAGTTTTCAAGCTGCAT 60.798 43.478 1.02 0.00 40.41 3.96
2615 10626 2.480073 GCAAGACAGTTTTCAAGCTGCA 60.480 45.455 1.02 0.00 40.41 4.41
2616 10627 2.122564 GCAAGACAGTTTTCAAGCTGC 58.877 47.619 3.51 0.00 40.41 5.25
2617 10628 3.705043 AGCAAGACAGTTTTCAAGCTG 57.295 42.857 2.13 2.13 42.17 4.24
2618 10629 3.445096 ACAAGCAAGACAGTTTTCAAGCT 59.555 39.130 0.00 0.00 31.52 3.74
2619 10630 3.549070 CACAAGCAAGACAGTTTTCAAGC 59.451 43.478 0.00 0.00 0.00 4.01
2620 10631 4.985413 TCACAAGCAAGACAGTTTTCAAG 58.015 39.130 0.00 0.00 0.00 3.02
2621 10632 5.048083 AGTTCACAAGCAAGACAGTTTTCAA 60.048 36.000 0.00 0.00 0.00 2.69
2622 10633 4.458989 AGTTCACAAGCAAGACAGTTTTCA 59.541 37.500 0.00 0.00 0.00 2.69
2623 10634 4.986622 AGTTCACAAGCAAGACAGTTTTC 58.013 39.130 0.00 0.00 0.00 2.29
2624 10635 5.163513 CAAGTTCACAAGCAAGACAGTTTT 58.836 37.500 0.00 0.00 0.00 2.43
2625 10636 4.218417 ACAAGTTCACAAGCAAGACAGTTT 59.782 37.500 0.00 0.00 0.00 2.66
2626 10637 3.758554 ACAAGTTCACAAGCAAGACAGTT 59.241 39.130 0.00 0.00 0.00 3.16
2627 10638 3.127548 CACAAGTTCACAAGCAAGACAGT 59.872 43.478 0.00 0.00 0.00 3.55
2628 10639 3.374988 TCACAAGTTCACAAGCAAGACAG 59.625 43.478 0.00 0.00 0.00 3.51
2629 10640 3.342719 TCACAAGTTCACAAGCAAGACA 58.657 40.909 0.00 0.00 0.00 3.41
2630 10641 4.558538 ATCACAAGTTCACAAGCAAGAC 57.441 40.909 0.00 0.00 0.00 3.01
2631 10642 5.368145 AGTATCACAAGTTCACAAGCAAGA 58.632 37.500 0.00 0.00 0.00 3.02
2632 10643 5.679734 AGTATCACAAGTTCACAAGCAAG 57.320 39.130 0.00 0.00 0.00 4.01
2633 10644 5.588246 TGAAGTATCACAAGTTCACAAGCAA 59.412 36.000 0.00 0.00 34.61 3.91
2634 10645 5.122519 TGAAGTATCACAAGTTCACAAGCA 58.877 37.500 0.00 0.00 34.61 3.91
2635 10646 5.673337 TGAAGTATCACAAGTTCACAAGC 57.327 39.130 0.00 0.00 34.61 4.01
2636 10647 6.138761 GCTTGAAGTATCACAAGTTCACAAG 58.861 40.000 0.00 0.00 43.41 3.16
2637 10648 5.588246 TGCTTGAAGTATCACAAGTTCACAA 59.412 36.000 0.00 0.00 43.41 3.33
2638 10649 5.122519 TGCTTGAAGTATCACAAGTTCACA 58.877 37.500 0.00 0.00 43.41 3.58
2639 10650 5.673337 TGCTTGAAGTATCACAAGTTCAC 57.327 39.130 0.00 0.00 43.41 3.18
2640 10651 6.882610 ATTGCTTGAAGTATCACAAGTTCA 57.117 33.333 0.00 0.00 43.41 3.18
2641 10652 7.806690 TGTATTGCTTGAAGTATCACAAGTTC 58.193 34.615 0.00 0.00 43.41 3.01
2642 10653 7.744087 TGTATTGCTTGAAGTATCACAAGTT 57.256 32.000 0.00 0.00 43.41 2.66
2643 10654 7.607607 TGATGTATTGCTTGAAGTATCACAAGT 59.392 33.333 0.00 0.00 43.41 3.16
2644 10655 7.907045 GTGATGTATTGCTTGAAGTATCACAAG 59.093 37.037 8.44 0.00 41.49 3.16
2645 10656 7.607607 AGTGATGTATTGCTTGAAGTATCACAA 59.392 33.333 13.63 1.80 43.25 3.33
2646 10657 7.105588 AGTGATGTATTGCTTGAAGTATCACA 58.894 34.615 13.63 7.89 43.25 3.58
2647 10658 7.545362 AGTGATGTATTGCTTGAAGTATCAC 57.455 36.000 0.00 0.00 41.92 3.06
2648 10659 7.823799 TCAAGTGATGTATTGCTTGAAGTATCA 59.176 33.333 0.00 0.00 42.66 2.15
2649 10660 8.201554 TCAAGTGATGTATTGCTTGAAGTATC 57.798 34.615 0.00 0.00 42.66 2.24
2650 10661 8.618677 CATCAAGTGATGTATTGCTTGAAGTAT 58.381 33.333 12.30 0.00 46.61 2.12
2651 10662 7.977904 CATCAAGTGATGTATTGCTTGAAGTA 58.022 34.615 12.30 0.00 46.61 2.24
2652 10663 6.849502 CATCAAGTGATGTATTGCTTGAAGT 58.150 36.000 12.30 0.00 46.61 3.01
2664 10675 8.974238 ACATAATGGAATTTCATCAAGTGATGT 58.026 29.630 18.38 2.10 43.79 3.06
2665 10676 9.459640 GACATAATGGAATTTCATCAAGTGATG 57.540 33.333 14.01 14.01 44.24 3.07
2666 10677 8.636213 GGACATAATGGAATTTCATCAAGTGAT 58.364 33.333 0.00 0.00 37.87 3.06
2667 10678 7.835682 AGGACATAATGGAATTTCATCAAGTGA 59.164 33.333 0.00 0.00 37.87 3.41
2729 10807 9.770097 TTATGCATTGTTTTCTTGAATAACCAA 57.230 25.926 3.54 0.00 0.00 3.67
2858 10936 7.984422 AATCAGCGACAATTAATATGGATCA 57.016 32.000 0.00 0.00 0.00 2.92
3294 11372 4.647424 AAAGCTCCAGAGATTAGAGTCG 57.353 45.455 0.00 0.00 35.80 4.18
3458 11536 8.792633 CATGATAGACCTGTTTGAAACCTTAAA 58.207 33.333 5.50 0.00 0.00 1.52
3776 11855 0.392998 AACAACTCCGGCTATGGCAG 60.393 55.000 2.58 0.00 40.87 4.85
4469 12549 4.273480 CCCATACAGCAAAGTACATAGCAC 59.727 45.833 0.00 0.00 0.00 4.40
4580 12660 6.882678 GCTCCAGTTAAAAGTATTCCCTACAA 59.117 38.462 0.00 0.00 32.34 2.41
5028 13109 5.437289 TGCATTTACCAAAGAACTGACTG 57.563 39.130 0.00 0.00 0.00 3.51
5029 13110 6.151144 GGTATGCATTTACCAAAGAACTGACT 59.849 38.462 12.90 0.00 41.18 3.41
5038 13119 6.259167 CGCTAGTAAGGTATGCATTTACCAAA 59.741 38.462 18.72 5.38 43.51 3.28
5062 13143 1.468054 GCCTAAATCACAAAGCCAGCG 60.468 52.381 0.00 0.00 0.00 5.18
5174 13255 9.185680 AGGTCACCAAATATACAAGGAAAATAC 57.814 33.333 0.00 0.00 0.00 1.89
5213 13294 1.059942 GGCAATTTTTGGAGTTCGCG 58.940 50.000 0.00 0.00 0.00 5.87
5219 13300 4.178540 CAGCACATAGGCAATTTTTGGAG 58.821 43.478 0.00 0.00 35.83 3.86
5398 13479 6.049790 GGATACAACTGAAGGTAGTTCCATC 58.950 44.000 0.00 0.00 38.78 3.51
5623 13707 4.081531 GGAATCACAATTGAGCATTTCCCA 60.082 41.667 13.59 0.00 33.58 4.37
5707 13791 7.915293 AATTGTCATTACGAAGGTACATCAA 57.085 32.000 0.00 0.00 0.00 2.57
5733 13817 8.959734 AACAGTAAAAAGTTACTCACACAAAC 57.040 30.769 0.00 0.00 45.63 2.93
5762 13847 5.643379 AACAATACATGGTGCCTGTAAAG 57.357 39.130 0.00 4.37 33.12 1.85
6193 14279 6.039941 CAGGACTAGGGACAACAATCTAGTAG 59.960 46.154 0.00 0.00 41.46 2.57
6824 14919 1.978542 ACTACTAGTTCAAGCGTGCG 58.021 50.000 0.00 0.00 0.00 5.34
6914 15009 5.920840 GGCAGTAAGCTAAAGAACCAAAAAG 59.079 40.000 0.00 0.00 44.79 2.27
7218 15313 9.971922 AAAAGAAACAATCTAAGTGGATGAAAG 57.028 29.630 0.00 0.00 37.42 2.62
7508 15603 4.522722 AGTGGAGTTTAAGAGAGGTTCG 57.477 45.455 0.00 0.00 0.00 3.95
7534 15629 4.458295 CGAGAGAAACAGTAACTACCCTCA 59.542 45.833 0.00 0.00 0.00 3.86
7814 15910 1.268079 GAAGCTGTGGTTCTTCTTGGC 59.732 52.381 0.00 0.00 37.13 4.52
7889 15985 4.510038 TTACAGTCGAAACTACCACCTC 57.490 45.455 0.00 0.00 33.25 3.85
8031 16127 3.444742 CACACAATCATGCAACACCCTAT 59.555 43.478 0.00 0.00 0.00 2.57
8032 16128 2.819019 CACACAATCATGCAACACCCTA 59.181 45.455 0.00 0.00 0.00 3.53
8052 16148 3.181466 ACGTCACAGATATGGCAATAGCA 60.181 43.478 0.00 0.00 44.61 3.49
8117 16213 1.699083 TGATGCACTTCCCAACTCAGA 59.301 47.619 0.00 0.00 0.00 3.27
8123 16219 3.245229 ACCAAGTATGATGCACTTCCCAA 60.245 43.478 0.00 0.00 33.99 4.12
8126 16222 5.880332 TCTAAACCAAGTATGATGCACTTCC 59.120 40.000 0.00 0.00 33.99 3.46
8270 16366 2.945278 TCCGTGTAACATGTTACGACC 58.055 47.619 32.75 24.33 46.19 4.79
8352 16449 5.405935 AAAAGACAGGACTTGCAGTTTTT 57.594 34.783 0.00 0.00 0.00 1.94
8365 16467 6.718522 TGGGGTAAAAACTAAAAAGACAGG 57.281 37.500 0.00 0.00 0.00 4.00
8389 16491 5.260424 ACACCAATACATATGAAACTGCCA 58.740 37.500 10.38 0.00 0.00 4.92
8433 16535 2.988010 ATTGCCGAATCACAGAGCTA 57.012 45.000 0.00 0.00 0.00 3.32
8460 16563 0.036875 GTTACTGAAGCCTGCACCCT 59.963 55.000 0.00 0.00 0.00 4.34
8521 16624 3.093717 ACAAACGAGTTCGACTCACAT 57.906 42.857 8.72 0.00 45.30 3.21
8532 16635 2.301870 TCCTGGCTGAATACAAACGAGT 59.698 45.455 0.00 0.00 0.00 4.18
8533 16636 2.972625 TCCTGGCTGAATACAAACGAG 58.027 47.619 0.00 0.00 0.00 4.18
8611 16718 6.552859 TGTTCTGTAACATGGTAATGTGTG 57.447 37.500 0.00 0.00 46.58 3.82
8618 16725 7.001674 ACATCCTTTTGTTCTGTAACATGGTA 58.998 34.615 0.00 0.00 44.85 3.25
8711 16818 1.301716 ACAGGTTGTAGCACTGCCG 60.302 57.895 0.00 0.00 35.70 5.69
8713 16820 1.308998 AACACAGGTTGTAGCACTGC 58.691 50.000 0.00 0.00 37.51 4.40
8726 16833 5.391310 GCACTAAACTGATCATCCAACACAG 60.391 44.000 0.00 0.00 35.14 3.66
8766 16873 3.709987 AGTTCAAGCACTCAAAACATGC 58.290 40.909 0.00 0.00 39.74 4.06
8790 16897 1.136085 CACCGTATTTGCACTTCCACG 60.136 52.381 0.00 0.00 0.00 4.94
8798 16905 4.257731 TCAAAGATAGCACCGTATTTGCA 58.742 39.130 0.00 0.00 42.83 4.08
8820 16927 9.649024 CATAAAAAGTTGTTCGCAAATCAATTT 57.351 25.926 0.00 0.00 39.04 1.82
8845 16952 4.974645 ACAAACTAGGATGAAGGTGTCA 57.025 40.909 4.26 0.00 41.67 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.