Multiple sequence alignment - TraesCS3D01G229900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G229900 chr3D 100.000 6297 0 0 1 6297 313301866 313308162 0.000000e+00 11629.0
1 TraesCS3D01G229900 chr3D 96.364 220 8 0 5808 6027 524311893 524311674 4.640000e-96 363.0
2 TraesCS3D01G229900 chr3D 88.158 76 7 2 5718 5791 397781630 397781555 8.690000e-14 89.8
3 TraesCS3D01G229900 chr3A 97.905 3866 59 10 1492 5343 418759040 418755183 0.000000e+00 6671.0
4 TraesCS3D01G229900 chr3A 94.105 1408 39 10 1 1386 418760553 418759168 0.000000e+00 2100.0
5 TraesCS3D01G229900 chr3A 93.732 351 12 3 5330 5679 418755165 418754824 9.360000e-143 518.0
6 TraesCS3D01G229900 chr3A 89.416 274 21 6 6026 6294 418752996 418752726 7.820000e-89 339.0
7 TraesCS3D01G229900 chr3A 90.580 138 12 1 5674 5810 418753132 418752995 1.390000e-41 182.0
8 TraesCS3D01G229900 chr3B 95.240 2857 89 21 2990 5810 406513451 406510606 0.000000e+00 4479.0
9 TraesCS3D01G229900 chr3B 96.658 1466 37 4 1492 2949 406514911 406513450 0.000000e+00 2425.0
10 TraesCS3D01G229900 chr3B 92.508 921 30 12 548 1445 406515913 406515009 0.000000e+00 1282.0
11 TraesCS3D01G229900 chr3B 97.818 550 11 1 1 549 406539226 406538677 0.000000e+00 948.0
12 TraesCS3D01G229900 chr3B 88.068 176 21 0 6117 6292 406510234 406510059 6.400000e-50 209.0
13 TraesCS3D01G229900 chr1B 96.380 221 8 0 5808 6028 526347802 526347582 1.290000e-96 364.0
14 TraesCS3D01G229900 chr1A 96.364 220 8 0 5809 6028 553906897 553907116 4.640000e-96 363.0
15 TraesCS3D01G229900 chr1A 88.732 71 7 1 5715 5784 415638063 415638133 1.120000e-12 86.1
16 TraesCS3D01G229900 chr7D 95.928 221 9 0 5807 6027 127735101 127735321 6.000000e-95 359.0
17 TraesCS3D01G229900 chr7D 89.552 67 6 1 5718 5783 634664852 634664786 4.050000e-12 84.2
18 TraesCS3D01G229900 chr2D 95.909 220 9 0 5809 6028 284560175 284559956 2.160000e-94 357.0
19 TraesCS3D01G229900 chr2D 97.297 37 1 0 3296 3332 60611197 60611233 5.270000e-06 63.9
20 TraesCS3D01G229900 chr5A 95.909 220 7 2 5809 6027 483329625 483329843 7.760000e-94 355.0
21 TraesCS3D01G229900 chr5A 93.220 236 15 1 5809 6043 122177482 122177717 4.670000e-91 346.0
22 TraesCS3D01G229900 chr4A 95.495 222 10 0 5809 6030 640236064 640235843 7.760000e-94 355.0
23 TraesCS3D01G229900 chr4A 86.667 75 9 1 5715 5788 56509357 56509431 1.450000e-11 82.4
24 TraesCS3D01G229900 chr7B 95.089 224 11 0 5805 6028 648055671 648055894 2.790000e-93 353.0
25 TraesCS3D01G229900 chr1D 90.141 71 6 1 5715 5784 326159365 326159435 2.420000e-14 91.6
26 TraesCS3D01G229900 chr1D 85.526 76 7 3 5715 5788 59951914 59951841 6.770000e-10 76.8
27 TraesCS3D01G229900 chr4B 86.667 75 9 1 5715 5788 492223473 492223547 1.450000e-11 82.4
28 TraesCS3D01G229900 chr2A 85.897 78 6 4 5715 5791 83783166 83783239 1.880000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G229900 chr3D 313301866 313308162 6296 False 11629.00 11629 100.0000 1 6297 1 chr3D.!!$F1 6296
1 TraesCS3D01G229900 chr3A 418752726 418760553 7827 True 1962.00 6671 93.1476 1 6294 5 chr3A.!!$R1 6293
2 TraesCS3D01G229900 chr3B 406510059 406515913 5854 True 2098.75 4479 93.1185 548 6292 4 chr3B.!!$R2 5744
3 TraesCS3D01G229900 chr3B 406538677 406539226 549 True 948.00 948 97.8180 1 549 1 chr3B.!!$R1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
783 812 0.034477 ACAATCCATCCAACCCGTCC 60.034 55.0 0.00 0.00 0.00 4.79 F
1134 1165 0.320374 TCTTCGGCAAGGTCGTCAAT 59.680 50.0 0.00 0.00 30.45 2.57 F
2872 2976 0.395312 ATTTGCTGCTTGCTGCCTTT 59.605 45.0 18.93 3.87 43.37 3.11 F
4826 4949 0.176680 ATACAGCAGTGCTCCTTCCG 59.823 55.0 16.58 5.41 36.40 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2564 2668 2.816087 CACTGCATGTTGAGGCTTTACT 59.184 45.455 0.0 0.0 0.00 2.24 R
3063 3169 0.680061 ACACTCACGGGGAAGAGTTC 59.320 55.000 0.0 0.0 42.87 3.01 R
4837 4960 1.141881 CCCTGGTGCTGCTACTACG 59.858 63.158 0.0 0.0 0.00 3.51 R
6189 8358 0.108186 CATCCTTGCCGCAGTACTCA 60.108 55.000 0.0 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 2.933834 AGGACGGGGTTGGGGAAG 60.934 66.667 0.00 0.00 0.00 3.46
606 620 0.102663 TGTGCGCCGTCGGATAATTA 59.897 50.000 17.49 0.00 38.56 1.40
610 624 1.415374 CGCCGTCGGATAATTACCTG 58.585 55.000 17.49 0.00 0.00 4.00
664 681 2.348998 CCGAAAGACTGCCTGGCT 59.651 61.111 21.03 0.00 33.68 4.75
742 764 2.221299 ACGAAACCCTAGGCAGGCA 61.221 57.895 2.05 0.00 41.08 4.75
783 812 0.034477 ACAATCCATCCAACCCGTCC 60.034 55.000 0.00 0.00 0.00 4.79
952 982 2.989840 GGGATCTGTTTATCGCGATCAG 59.010 50.000 27.45 24.90 35.22 2.90
969 1000 2.089201 TCAGTGCCGAGTTAAGATCGA 58.911 47.619 10.75 0.00 42.76 3.59
1134 1165 0.320374 TCTTCGGCAAGGTCGTCAAT 59.680 50.000 0.00 0.00 30.45 2.57
1212 1243 2.636830 ACTTCCAGATCCTTGATTGCG 58.363 47.619 0.00 0.00 0.00 4.85
1386 1421 8.527810 CCATTCATAAACTGTTAAGGCCTTTAA 58.472 33.333 26.08 12.91 0.00 1.52
1387 1422 9.573133 CATTCATAAACTGTTAAGGCCTTTAAG 57.427 33.333 26.08 19.97 32.07 1.85
1388 1423 8.927675 TTCATAAACTGTTAAGGCCTTTAAGA 57.072 30.769 26.08 12.93 32.07 2.10
1389 1424 9.528489 TTCATAAACTGTTAAGGCCTTTAAGAT 57.472 29.630 26.08 10.72 32.07 2.40
1395 1430 8.738645 ACTGTTAAGGCCTTTAAGATATCTTG 57.261 34.615 26.08 11.39 37.40 3.02
1467 1527 5.757850 AATTGTGTCTGGAGTTTGTCTTC 57.242 39.130 0.00 0.00 0.00 2.87
1769 1864 7.970102 TGTTCTACACTTGGTAAGGAAGTTAT 58.030 34.615 0.00 0.00 31.05 1.89
1809 1904 9.778741 ATTTCTGTTGTTTACTTAGTCTGATGA 57.221 29.630 0.00 0.00 0.00 2.92
2048 2143 1.075600 CTCCCTCTCTCCCTCCCAC 60.076 68.421 0.00 0.00 0.00 4.61
2067 2162 2.612251 CTCCTCCCTCCCTCCCTC 59.388 72.222 0.00 0.00 0.00 4.30
2291 2386 3.598019 TGAAGCCGTTACCGTAAAGAT 57.402 42.857 5.86 0.00 0.00 2.40
2310 2405 7.934855 AAAGATAACACAAGATGAAGATGCT 57.065 32.000 0.00 0.00 0.00 3.79
2388 2483 6.983890 ACAATTCGTATCTTTTTGCCAAAACT 59.016 30.769 1.25 0.00 0.00 2.66
2393 2489 8.025243 TCGTATCTTTTTGCCAAAACTACTAG 57.975 34.615 1.25 0.00 0.00 2.57
2564 2668 9.944376 AGTTTTAGAAAGTACATCAGCTAATCA 57.056 29.630 0.00 0.00 0.00 2.57
2655 2759 5.918608 TCTGTCATTCTTTATGCCCTCTAC 58.081 41.667 0.00 0.00 34.06 2.59
2680 2784 5.952347 TCTCAAGTGACTGACATACCTGTAT 59.048 40.000 0.00 0.00 35.14 2.29
2872 2976 0.395312 ATTTGCTGCTTGCTGCCTTT 59.605 45.000 18.93 3.87 43.37 3.11
2920 3024 5.296813 ACAAATGGAAAGTATTGACTCGC 57.703 39.130 0.00 0.00 33.58 5.03
2963 3067 6.413783 TCTATGGTTATAATTGTGCGAGGA 57.586 37.500 0.00 0.00 0.00 3.71
2972 3076 6.851222 ATAATTGTGCGAGGAGAAACATAG 57.149 37.500 0.00 0.00 0.00 2.23
3063 3169 3.436700 AAACCTCAAAACTTGCCTTCG 57.563 42.857 0.00 0.00 0.00 3.79
3103 3209 7.633789 AGTGTCATGGTTAGTGAGGAATTTAT 58.366 34.615 0.00 0.00 0.00 1.40
3122 3228 6.668541 TTTATCTTGTATGCTTCTGTGCTC 57.331 37.500 0.00 0.00 0.00 4.26
3418 3528 5.548181 TCTCATCTGATCATCCCTTCAAG 57.452 43.478 0.00 0.00 0.00 3.02
3463 3573 8.436046 TTTTTAAGAACAAGCAGCATGATTTT 57.564 26.923 4.23 0.00 46.08 1.82
3854 3965 5.625921 ACAAACATGGGCAAAATAATTGC 57.374 34.783 4.64 4.64 44.22 3.56
3932 4043 5.452078 TCTCATTTTGGCGTTGAAAGATT 57.548 34.783 0.00 0.00 0.00 2.40
3937 4048 3.896648 TTGGCGTTGAAAGATTCTCAC 57.103 42.857 0.00 0.00 0.00 3.51
4551 4664 6.655003 CCGATCTTAATGTTAGGGTAATGCAT 59.345 38.462 0.00 0.00 0.00 3.96
4561 4674 1.490490 GGGTAATGCATCACTCCCTCA 59.510 52.381 16.22 0.00 32.89 3.86
4609 4723 0.469917 ACCATCGTGCTGGGGAATAG 59.530 55.000 6.43 0.00 40.85 1.73
4611 4725 1.140852 CCATCGTGCTGGGGAATAGAA 59.859 52.381 0.00 0.00 32.28 2.10
4658 4772 5.423015 ACTTGTGCCTGATATGAACTAGTG 58.577 41.667 0.00 0.00 0.00 2.74
4826 4949 0.176680 ATACAGCAGTGCTCCTTCCG 59.823 55.000 16.58 5.41 36.40 4.30
4837 4960 3.123620 CCTTCCGCAGCAGCTGAC 61.124 66.667 27.39 15.79 39.10 3.51
4919 5042 1.149174 AGTCAGCCACACCCACAAG 59.851 57.895 0.00 0.00 0.00 3.16
4921 5044 3.297620 CAGCCACACCCACAAGCC 61.298 66.667 0.00 0.00 0.00 4.35
4942 5065 1.879796 GCTTCAGGTGGACCTCAACAG 60.880 57.143 0.00 0.00 46.65 3.16
5367 5523 3.427503 CGGTGACCATTTTATTGTGGCTC 60.428 47.826 1.11 0.00 39.13 4.70
5541 5698 1.153353 TTCGTTTCTGCGGCCTTTAG 58.847 50.000 0.00 0.00 0.00 1.85
5629 5787 4.969196 ACGTCACAGCAGCGTGGG 62.969 66.667 14.68 10.68 37.47 4.61
5719 7577 9.910267 GTATGGTTTTAAAGGGGTCTCTATTAA 57.090 33.333 0.00 0.00 0.00 1.40
5777 7663 6.145534 TCAGCGACAATTAATATGGATCGAAC 59.854 38.462 0.00 0.00 0.00 3.95
5793 7680 9.931210 ATGGATCGAACGAGTATTAAAAATTTC 57.069 29.630 2.94 0.00 0.00 2.17
5811 7698 9.462606 AAAAATTTCGGATACTTCCAGATTACT 57.537 29.630 0.00 0.00 42.74 2.24
5813 7700 9.543783 AAATTTCGGATACTTCCAGATTACTAC 57.456 33.333 0.00 0.00 42.74 2.73
5814 7701 6.645790 TTCGGATACTTCCAGATTACTACC 57.354 41.667 0.00 0.00 42.74 3.18
5815 7702 5.950023 TCGGATACTTCCAGATTACTACCT 58.050 41.667 0.00 0.00 42.74 3.08
5816 7703 6.002704 TCGGATACTTCCAGATTACTACCTC 58.997 44.000 0.00 0.00 42.74 3.85
5817 7704 6.005198 CGGATACTTCCAGATTACTACCTCT 58.995 44.000 0.00 0.00 42.74 3.69
5818 7705 6.490721 CGGATACTTCCAGATTACTACCTCTT 59.509 42.308 0.00 0.00 42.74 2.85
5819 7706 7.014422 CGGATACTTCCAGATTACTACCTCTTT 59.986 40.741 0.00 0.00 42.74 2.52
5820 7707 8.361889 GGATACTTCCAGATTACTACCTCTTTC 58.638 40.741 0.00 0.00 42.12 2.62
5821 7708 9.138596 GATACTTCCAGATTACTACCTCTTTCT 57.861 37.037 0.00 0.00 0.00 2.52
5822 7709 7.412853 ACTTCCAGATTACTACCTCTTTCTC 57.587 40.000 0.00 0.00 0.00 2.87
5823 7710 6.954684 ACTTCCAGATTACTACCTCTTTCTCA 59.045 38.462 0.00 0.00 0.00 3.27
5824 7711 7.123547 ACTTCCAGATTACTACCTCTTTCTCAG 59.876 40.741 0.00 0.00 0.00 3.35
5825 7712 6.494952 TCCAGATTACTACCTCTTTCTCAGT 58.505 40.000 0.00 0.00 0.00 3.41
5826 7713 6.954684 TCCAGATTACTACCTCTTTCTCAGTT 59.045 38.462 0.00 0.00 0.00 3.16
5827 7714 7.455008 TCCAGATTACTACCTCTTTCTCAGTTT 59.545 37.037 0.00 0.00 0.00 2.66
5828 7715 8.750298 CCAGATTACTACCTCTTTCTCAGTTTA 58.250 37.037 0.00 0.00 0.00 2.01
5829 7716 9.575783 CAGATTACTACCTCTTTCTCAGTTTAC 57.424 37.037 0.00 0.00 0.00 2.01
5830 7717 9.310449 AGATTACTACCTCTTTCTCAGTTTACA 57.690 33.333 0.00 0.00 0.00 2.41
5831 7718 9.575783 GATTACTACCTCTTTCTCAGTTTACAG 57.424 37.037 0.00 0.00 0.00 2.74
5832 7719 6.347859 ACTACCTCTTTCTCAGTTTACAGG 57.652 41.667 0.00 0.00 0.00 4.00
5833 7720 4.625607 ACCTCTTTCTCAGTTTACAGGG 57.374 45.455 0.00 0.00 0.00 4.45
5834 7721 3.244596 ACCTCTTTCTCAGTTTACAGGGC 60.245 47.826 0.00 0.00 0.00 5.19
5835 7722 2.996621 CTCTTTCTCAGTTTACAGGGCG 59.003 50.000 0.00 0.00 0.00 6.13
5836 7723 2.367567 TCTTTCTCAGTTTACAGGGCGT 59.632 45.455 0.00 0.00 0.00 5.68
5837 7724 2.163818 TTCTCAGTTTACAGGGCGTG 57.836 50.000 5.50 5.50 0.00 5.34
5838 7725 0.320421 TCTCAGTTTACAGGGCGTGC 60.320 55.000 7.17 0.00 0.00 5.34
5839 7726 1.626654 CTCAGTTTACAGGGCGTGCG 61.627 60.000 7.17 0.00 0.00 5.34
5840 7727 1.959226 CAGTTTACAGGGCGTGCGT 60.959 57.895 7.17 0.00 0.00 5.24
5841 7728 1.959226 AGTTTACAGGGCGTGCGTG 60.959 57.895 7.17 0.00 0.00 5.34
5842 7729 2.109387 TTTACAGGGCGTGCGTGT 59.891 55.556 7.17 4.24 0.00 4.49
5843 7730 0.945265 GTTTACAGGGCGTGCGTGTA 60.945 55.000 7.17 2.56 0.00 2.90
5844 7731 0.945265 TTTACAGGGCGTGCGTGTAC 60.945 55.000 7.17 0.00 0.00 2.90
5845 7732 2.768503 TTACAGGGCGTGCGTGTACC 62.769 60.000 7.17 0.00 0.00 3.34
5849 7736 3.762247 GGCGTGCGTGTACCCCTA 61.762 66.667 0.00 0.00 0.00 3.53
5850 7737 2.202703 GCGTGCGTGTACCCCTAG 60.203 66.667 0.00 0.00 0.00 3.02
5851 7738 2.493030 CGTGCGTGTACCCCTAGG 59.507 66.667 0.06 0.06 40.04 3.02
5853 7740 1.514553 GTGCGTGTACCCCTAGGTC 59.485 63.158 8.29 0.00 46.45 3.85
5854 7741 2.048023 TGCGTGTACCCCTAGGTCG 61.048 63.158 8.29 0.00 46.45 4.79
5855 7742 2.048603 GCGTGTACCCCTAGGTCGT 61.049 63.158 8.29 6.00 46.45 4.34
5856 7743 1.997928 GCGTGTACCCCTAGGTCGTC 61.998 65.000 8.29 0.00 46.45 4.20
5857 7744 0.677731 CGTGTACCCCTAGGTCGTCA 60.678 60.000 8.29 0.00 46.45 4.35
5858 7745 1.549203 GTGTACCCCTAGGTCGTCAA 58.451 55.000 8.29 0.00 46.45 3.18
5859 7746 2.105766 GTGTACCCCTAGGTCGTCAAT 58.894 52.381 8.29 0.00 46.45 2.57
5860 7747 2.498885 GTGTACCCCTAGGTCGTCAATT 59.501 50.000 8.29 0.00 46.45 2.32
5861 7748 3.055602 GTGTACCCCTAGGTCGTCAATTT 60.056 47.826 8.29 0.00 46.45 1.82
5862 7749 2.781681 ACCCCTAGGTCGTCAATTTG 57.218 50.000 8.29 0.00 46.45 2.32
5863 7750 2.262637 ACCCCTAGGTCGTCAATTTGA 58.737 47.619 8.29 0.00 46.45 2.69
5864 7751 2.027469 ACCCCTAGGTCGTCAATTTGAC 60.027 50.000 17.76 17.76 46.45 3.18
5865 7752 5.201262 ACCCCTAGGTCGTCAATTTGACC 62.201 52.174 20.87 10.15 46.45 4.02
5873 7760 5.622770 GTCGTCAATTTGACCAACCTAAT 57.377 39.130 20.87 0.00 44.20 1.73
5874 7761 6.730960 GTCGTCAATTTGACCAACCTAATA 57.269 37.500 20.87 0.00 44.20 0.98
5875 7762 6.540205 GTCGTCAATTTGACCAACCTAATAC 58.460 40.000 20.87 5.03 44.20 1.89
5876 7763 6.148150 GTCGTCAATTTGACCAACCTAATACA 59.852 38.462 20.87 0.00 44.20 2.29
5877 7764 6.711194 TCGTCAATTTGACCAACCTAATACAA 59.289 34.615 20.87 0.00 44.20 2.41
5878 7765 7.021196 CGTCAATTTGACCAACCTAATACAAG 58.979 38.462 20.87 1.46 44.20 3.16
5879 7766 7.308348 CGTCAATTTGACCAACCTAATACAAGT 60.308 37.037 20.87 0.00 44.20 3.16
5880 7767 8.021396 GTCAATTTGACCAACCTAATACAAGTC 58.979 37.037 17.07 0.00 41.37 3.01
5881 7768 7.721842 TCAATTTGACCAACCTAATACAAGTCA 59.278 33.333 0.00 0.00 0.00 3.41
5882 7769 8.522830 CAATTTGACCAACCTAATACAAGTCAT 58.477 33.333 0.00 0.00 33.21 3.06
5883 7770 9.747898 AATTTGACCAACCTAATACAAGTCATA 57.252 29.630 0.00 0.00 33.21 2.15
5884 7771 9.920946 ATTTGACCAACCTAATACAAGTCATAT 57.079 29.630 0.00 0.00 33.21 1.78
5933 7820 9.450807 AAACTTCAGATGTTCTATTTTCAAACG 57.549 29.630 2.28 0.00 0.00 3.60
5934 7821 8.378172 ACTTCAGATGTTCTATTTTCAAACGA 57.622 30.769 0.00 0.00 0.00 3.85
5935 7822 9.003658 ACTTCAGATGTTCTATTTTCAAACGAT 57.996 29.630 0.00 0.00 0.00 3.73
5984 7871 5.669164 TTAGGGTGATAAAATTGGCAACC 57.331 39.130 0.00 0.00 38.39 3.77
5985 7872 3.790126 AGGGTGATAAAATTGGCAACCT 58.210 40.909 0.00 0.00 43.35 3.50
5986 7873 4.941713 AGGGTGATAAAATTGGCAACCTA 58.058 39.130 0.00 0.00 46.13 3.08
5987 7874 5.337788 AGGGTGATAAAATTGGCAACCTAA 58.662 37.500 0.00 0.00 46.13 2.69
5988 7875 5.422012 AGGGTGATAAAATTGGCAACCTAAG 59.578 40.000 0.00 0.00 46.13 2.18
5989 7876 5.186992 GGGTGATAAAATTGGCAACCTAAGT 59.813 40.000 0.00 0.00 35.26 2.24
5990 7877 6.378848 GGGTGATAAAATTGGCAACCTAAGTA 59.621 38.462 0.00 0.00 35.26 2.24
5991 7878 7.069455 GGGTGATAAAATTGGCAACCTAAGTAT 59.931 37.037 0.00 0.00 35.26 2.12
5992 7879 9.127277 GGTGATAAAATTGGCAACCTAAGTATA 57.873 33.333 0.00 0.00 0.00 1.47
5993 7880 9.946165 GTGATAAAATTGGCAACCTAAGTATAC 57.054 33.333 0.00 0.00 0.00 1.47
5994 7881 8.832521 TGATAAAATTGGCAACCTAAGTATACG 58.167 33.333 0.00 0.00 0.00 3.06
5995 7882 5.494632 AAATTGGCAACCTAAGTATACGC 57.505 39.130 0.00 0.00 0.00 4.42
5996 7883 2.212869 TGGCAACCTAAGTATACGCG 57.787 50.000 3.53 3.53 0.00 6.01
5997 7884 1.477700 TGGCAACCTAAGTATACGCGT 59.522 47.619 19.17 19.17 0.00 6.01
5998 7885 2.687425 TGGCAACCTAAGTATACGCGTA 59.313 45.455 22.94 22.94 0.00 4.42
5999 7886 3.243168 TGGCAACCTAAGTATACGCGTAG 60.243 47.826 24.78 11.28 0.00 3.51
6000 7887 3.303406 GCAACCTAAGTATACGCGTAGG 58.697 50.000 24.78 21.85 43.26 3.18
6001 7888 3.003689 GCAACCTAAGTATACGCGTAGGA 59.996 47.826 25.95 14.03 41.19 2.94
6002 7889 4.531332 CAACCTAAGTATACGCGTAGGAC 58.469 47.826 25.95 23.20 41.19 3.85
6003 7890 4.078639 ACCTAAGTATACGCGTAGGACT 57.921 45.455 25.95 24.76 41.19 3.85
6004 7891 4.455606 ACCTAAGTATACGCGTAGGACTT 58.544 43.478 33.62 33.62 41.19 3.01
6005 7892 4.274459 ACCTAAGTATACGCGTAGGACTTG 59.726 45.833 35.95 28.30 41.19 3.16
6006 7893 4.274459 CCTAAGTATACGCGTAGGACTTGT 59.726 45.833 35.95 24.46 41.19 3.16
6007 7894 5.466728 CCTAAGTATACGCGTAGGACTTGTA 59.533 44.000 35.95 25.38 41.19 2.41
6008 7895 5.818136 AAGTATACGCGTAGGACTTGTAA 57.182 39.130 32.23 10.34 0.00 2.41
6009 7896 5.818136 AGTATACGCGTAGGACTTGTAAA 57.182 39.130 24.78 0.00 0.00 2.01
6010 7897 5.573146 AGTATACGCGTAGGACTTGTAAAC 58.427 41.667 24.78 8.94 0.00 2.01
6011 7898 4.708726 ATACGCGTAGGACTTGTAAACT 57.291 40.909 24.78 0.00 0.00 2.66
6012 7899 2.669364 ACGCGTAGGACTTGTAAACTG 58.331 47.619 11.67 0.00 0.00 3.16
6013 7900 2.294233 ACGCGTAGGACTTGTAAACTGA 59.706 45.455 11.67 0.00 0.00 3.41
6014 7901 3.243501 ACGCGTAGGACTTGTAAACTGAA 60.244 43.478 11.67 0.00 0.00 3.02
6015 7902 3.737266 CGCGTAGGACTTGTAAACTGAAA 59.263 43.478 0.00 0.00 0.00 2.69
6016 7903 4.375706 CGCGTAGGACTTGTAAACTGAAAC 60.376 45.833 0.00 0.00 0.00 2.78
6017 7904 4.375706 GCGTAGGACTTGTAAACTGAAACG 60.376 45.833 0.00 0.00 0.00 3.60
6018 7905 4.149396 CGTAGGACTTGTAAACTGAAACGG 59.851 45.833 0.00 0.00 0.00 4.44
6019 7906 4.411256 AGGACTTGTAAACTGAAACGGA 57.589 40.909 0.00 0.00 0.00 4.69
6020 7907 4.377897 AGGACTTGTAAACTGAAACGGAG 58.622 43.478 0.00 0.00 0.00 4.63
6021 7908 3.497262 GGACTTGTAAACTGAAACGGAGG 59.503 47.826 0.00 0.00 0.00 4.30
6022 7909 4.124970 GACTTGTAAACTGAAACGGAGGT 58.875 43.478 0.00 0.00 0.00 3.85
6023 7910 5.280654 ACTTGTAAACTGAAACGGAGGTA 57.719 39.130 0.00 0.00 0.00 3.08
6024 7911 5.295152 ACTTGTAAACTGAAACGGAGGTAG 58.705 41.667 0.00 0.00 0.00 3.18
6062 7949 9.988350 GGTCATTTTCTTTTTCTTTTTCTTTCC 57.012 29.630 0.00 0.00 0.00 3.13
6067 7954 8.771920 TTTCTTTTTCTTTTTCTTTCCTGTCC 57.228 30.769 0.00 0.00 0.00 4.02
6068 7955 7.475137 TCTTTTTCTTTTTCTTTCCTGTCCA 57.525 32.000 0.00 0.00 0.00 4.02
6073 7960 6.639632 TCTTTTTCTTTCCTGTCCATCTTG 57.360 37.500 0.00 0.00 0.00 3.02
6074 7961 5.536161 TCTTTTTCTTTCCTGTCCATCTTGG 59.464 40.000 0.00 0.00 39.43 3.61
6198 8367 0.035056 AGGCCCACATTGAGTACTGC 60.035 55.000 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
551 565 5.454966 AGAAACCCACTTCTAAACCACATT 58.545 37.500 0.00 0.00 33.81 2.71
606 620 0.034670 GGAGCTGCAAATCTCCAGGT 60.035 55.000 18.99 0.00 46.24 4.00
610 624 1.372087 CCACGGAGCTGCAAATCTCC 61.372 60.000 15.63 15.63 44.14 3.71
692 709 1.064611 TGGGAAGAGAGAGTACGGAGG 60.065 57.143 0.00 0.00 0.00 4.30
802 831 1.677633 TCGACGATGTGGAGAGGCA 60.678 57.895 0.00 0.00 0.00 4.75
854 883 1.683790 CTGAACTTAACGGCGGCGAG 61.684 60.000 38.93 26.24 0.00 5.03
855 884 1.735198 CTGAACTTAACGGCGGCGA 60.735 57.895 38.93 14.49 0.00 5.54
856 885 2.736682 CCTGAACTTAACGGCGGCG 61.737 63.158 31.06 31.06 0.00 6.46
857 886 3.035576 GCCTGAACTTAACGGCGGC 62.036 63.158 13.24 0.00 32.22 6.53
858 887 1.359459 GAGCCTGAACTTAACGGCGG 61.359 60.000 13.24 0.00 46.85 6.13
859 888 1.359459 GGAGCCTGAACTTAACGGCG 61.359 60.000 4.80 4.80 46.85 6.46
902 931 4.879244 AGGAAACTGTCAGTGGATACGCA 61.879 47.826 6.18 0.00 46.63 5.24
952 982 2.541999 CCTCTCGATCTTAACTCGGCAC 60.542 54.545 0.00 0.00 36.78 5.01
969 1000 2.192263 CCAAAAGCTCCTCCTACCTCT 58.808 52.381 0.00 0.00 0.00 3.69
1134 1165 1.957186 GCCGACGTTGCACTTGGTA 60.957 57.895 6.18 0.00 0.00 3.25
1212 1243 3.778618 AGGCCGAAACTATAACGAAGAC 58.221 45.455 0.00 0.00 0.00 3.01
1386 1421 5.189180 GTTTCTTCCTGTGCCAAGATATCT 58.811 41.667 0.00 0.00 0.00 1.98
1387 1422 4.336713 GGTTTCTTCCTGTGCCAAGATATC 59.663 45.833 0.00 0.00 0.00 1.63
1388 1423 4.018050 AGGTTTCTTCCTGTGCCAAGATAT 60.018 41.667 0.00 0.00 36.35 1.63
1389 1424 3.330701 AGGTTTCTTCCTGTGCCAAGATA 59.669 43.478 0.00 0.00 36.35 1.98
1390 1425 2.108952 AGGTTTCTTCCTGTGCCAAGAT 59.891 45.455 0.00 0.00 36.35 2.40
1391 1426 1.494721 AGGTTTCTTCCTGTGCCAAGA 59.505 47.619 0.00 0.00 36.35 3.02
1392 1427 1.986882 AGGTTTCTTCCTGTGCCAAG 58.013 50.000 0.00 0.00 36.35 3.61
1393 1428 2.452600 AAGGTTTCTTCCTGTGCCAA 57.547 45.000 0.00 0.00 37.93 4.52
1395 1430 3.487372 ACTAAAGGTTTCTTCCTGTGCC 58.513 45.455 0.00 0.00 37.93 5.01
1769 1864 7.482169 ACAACAGAAATCATACTAGGACTCA 57.518 36.000 0.00 0.00 0.00 3.41
1809 1904 4.082026 GGCAAATCAAGTTAATCCTGCAGT 60.082 41.667 13.81 0.00 0.00 4.40
2048 2143 4.179599 GGGAGGGAGGGAGGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
2291 2386 8.886719 CAATTCTAGCATCTTCATCTTGTGTTA 58.113 33.333 0.00 0.00 0.00 2.41
2388 2483 7.328493 GCGTGAATAATGTATGCATGTCTAGTA 59.672 37.037 10.16 0.00 33.92 1.82
2393 2489 4.466828 GGCGTGAATAATGTATGCATGTC 58.533 43.478 10.16 3.02 33.92 3.06
2564 2668 2.816087 CACTGCATGTTGAGGCTTTACT 59.184 45.455 0.00 0.00 0.00 2.24
2655 2759 4.219507 ACAGGTATGTCAGTCACTTGAGAG 59.780 45.833 0.00 0.00 32.99 3.20
2680 2784 4.859304 AGCTCAATTGAACAGAATTGCA 57.141 36.364 9.88 0.00 41.31 4.08
2872 2976 4.095782 GCGTTTATAACAGATGGCCAAGAA 59.904 41.667 10.96 0.00 0.00 2.52
3063 3169 0.680061 ACACTCACGGGGAAGAGTTC 59.320 55.000 0.00 0.00 42.87 3.01
3103 3209 3.969287 AGAGCACAGAAGCATACAAGA 57.031 42.857 0.00 0.00 36.85 3.02
3418 3528 5.382618 AAAGAGAAACCATCATGCAAGAC 57.617 39.130 0.00 0.00 0.00 3.01
3463 3573 5.382664 AACCTACCAGGACAAAGAAAAGA 57.617 39.130 0.00 0.00 37.67 2.52
3932 4043 5.544176 AGAAACCAATAAGTGAGGAGTGAGA 59.456 40.000 0.00 0.00 0.00 3.27
3937 4048 6.717084 AGGAAAAGAAACCAATAAGTGAGGAG 59.283 38.462 0.00 0.00 0.00 3.69
4236 4349 2.745968 ACAGGAACAAATGGTTGGTGT 58.254 42.857 0.00 0.00 40.63 4.16
4551 4664 5.715439 ATTTGGACATAATGAGGGAGTGA 57.285 39.130 0.00 0.00 0.00 3.41
4609 4723 1.913317 GCCTGGTGCATCGAAATTTC 58.087 50.000 8.20 8.20 40.77 2.17
4658 4772 8.908786 TCACCAAGGATTTAACATCTGATATC 57.091 34.615 0.00 0.00 0.00 1.63
4826 4949 1.142778 GCTACTACGTCAGCTGCTGC 61.143 60.000 24.38 17.48 40.05 5.25
4837 4960 1.141881 CCCTGGTGCTGCTACTACG 59.858 63.158 0.00 0.00 0.00 3.51
4919 5042 4.021925 AGGTCCACCTGAAGCGGC 62.022 66.667 0.00 0.00 46.55 6.53
4942 5065 3.372554 GACTCCCTGGCTGGCGTAC 62.373 68.421 4.64 0.00 0.00 3.67
5629 5787 6.071051 ACTCTAAACTCCTGAACTCTTGATCC 60.071 42.308 0.00 0.00 0.00 3.36
5681 7539 7.556275 CCTTTAAAACCATACAGAGGCTATTGA 59.444 37.037 5.58 0.00 0.00 2.57
5777 7663 9.859692 GGAAGTATCCGAAATTTTTAATACTCG 57.140 33.333 15.10 3.78 35.59 4.18
5808 7695 6.436532 CCCTGTAAACTGAGAAAGAGGTAGTA 59.563 42.308 0.00 0.00 0.00 1.82
5809 7696 5.246429 CCCTGTAAACTGAGAAAGAGGTAGT 59.754 44.000 0.00 0.00 0.00 2.73
5810 7697 5.725362 CCCTGTAAACTGAGAAAGAGGTAG 58.275 45.833 0.00 0.00 0.00 3.18
5811 7698 4.020485 GCCCTGTAAACTGAGAAAGAGGTA 60.020 45.833 0.00 0.00 0.00 3.08
5812 7699 3.244596 GCCCTGTAAACTGAGAAAGAGGT 60.245 47.826 0.00 0.00 0.00 3.85
5813 7700 3.339141 GCCCTGTAAACTGAGAAAGAGG 58.661 50.000 0.00 0.00 0.00 3.69
5814 7701 2.996621 CGCCCTGTAAACTGAGAAAGAG 59.003 50.000 0.00 0.00 0.00 2.85
5815 7702 2.367567 ACGCCCTGTAAACTGAGAAAGA 59.632 45.455 0.00 0.00 0.00 2.52
5816 7703 2.480419 CACGCCCTGTAAACTGAGAAAG 59.520 50.000 0.00 0.00 0.00 2.62
5817 7704 2.489971 CACGCCCTGTAAACTGAGAAA 58.510 47.619 0.00 0.00 0.00 2.52
5818 7705 1.876416 GCACGCCCTGTAAACTGAGAA 60.876 52.381 0.00 0.00 0.00 2.87
5819 7706 0.320421 GCACGCCCTGTAAACTGAGA 60.320 55.000 0.00 0.00 0.00 3.27
5820 7707 1.626654 CGCACGCCCTGTAAACTGAG 61.627 60.000 0.00 0.00 0.00 3.35
5821 7708 1.666553 CGCACGCCCTGTAAACTGA 60.667 57.895 0.00 0.00 0.00 3.41
5822 7709 1.959226 ACGCACGCCCTGTAAACTG 60.959 57.895 0.00 0.00 0.00 3.16
5823 7710 1.959226 CACGCACGCCCTGTAAACT 60.959 57.895 0.00 0.00 0.00 2.66
5824 7711 0.945265 TACACGCACGCCCTGTAAAC 60.945 55.000 0.00 0.00 0.00 2.01
5825 7712 0.945265 GTACACGCACGCCCTGTAAA 60.945 55.000 0.00 0.00 0.00 2.01
5826 7713 1.373246 GTACACGCACGCCCTGTAA 60.373 57.895 0.00 0.00 0.00 2.41
5827 7714 2.259204 GTACACGCACGCCCTGTA 59.741 61.111 0.00 0.00 0.00 2.74
5828 7715 4.675029 GGTACACGCACGCCCTGT 62.675 66.667 0.00 0.00 0.00 4.00
5833 7720 2.202703 CTAGGGGTACACGCACGC 60.203 66.667 0.00 0.00 33.80 5.34
5834 7721 2.345760 ACCTAGGGGTACACGCACG 61.346 63.158 14.81 0.00 45.32 5.34
5835 7722 3.704151 ACCTAGGGGTACACGCAC 58.296 61.111 14.81 0.00 45.32 5.34
5840 7727 7.304933 GTCAAATTGACGACCTAGGGGTACA 62.305 48.000 14.81 5.35 40.90 2.90
5841 7728 4.916984 GTCAAATTGACGACCTAGGGGTAC 60.917 50.000 14.81 2.61 40.90 3.34
5842 7729 3.196254 GTCAAATTGACGACCTAGGGGTA 59.804 47.826 14.81 0.00 40.90 3.69
5843 7730 2.027469 GTCAAATTGACGACCTAGGGGT 60.027 50.000 14.81 10.74 42.37 4.95
5844 7731 2.629051 GTCAAATTGACGACCTAGGGG 58.371 52.381 14.81 7.16 37.67 4.79
5854 7741 7.882179 ACTTGTATTAGGTTGGTCAAATTGAC 58.118 34.615 17.16 17.16 46.23 3.18
5855 7742 7.721842 TGACTTGTATTAGGTTGGTCAAATTGA 59.278 33.333 0.00 0.00 30.81 2.57
5856 7743 7.881142 TGACTTGTATTAGGTTGGTCAAATTG 58.119 34.615 0.00 0.00 30.81 2.32
5857 7744 8.650143 ATGACTTGTATTAGGTTGGTCAAATT 57.350 30.769 0.00 0.00 36.16 1.82
5858 7745 9.920946 ATATGACTTGTATTAGGTTGGTCAAAT 57.079 29.630 0.00 0.00 36.16 2.32
5907 7794 9.450807 CGTTTGAAAATAGAACATCTGAAGTTT 57.549 29.630 0.00 0.00 0.00 2.66
5908 7795 8.836413 TCGTTTGAAAATAGAACATCTGAAGTT 58.164 29.630 0.00 0.00 0.00 2.66
5909 7796 8.378172 TCGTTTGAAAATAGAACATCTGAAGT 57.622 30.769 0.00 0.00 0.00 3.01
5958 7845 9.084533 GGTTGCCAATTTTATCACCCTAATATA 57.915 33.333 0.00 0.00 0.00 0.86
5959 7846 7.789349 AGGTTGCCAATTTTATCACCCTAATAT 59.211 33.333 0.00 0.00 0.00 1.28
5960 7847 7.129425 AGGTTGCCAATTTTATCACCCTAATA 58.871 34.615 0.00 0.00 0.00 0.98
5961 7848 5.963865 AGGTTGCCAATTTTATCACCCTAAT 59.036 36.000 0.00 0.00 0.00 1.73
5962 7849 5.337788 AGGTTGCCAATTTTATCACCCTAA 58.662 37.500 0.00 0.00 0.00 2.69
5963 7850 4.941713 AGGTTGCCAATTTTATCACCCTA 58.058 39.130 0.00 0.00 0.00 3.53
5964 7851 3.790126 AGGTTGCCAATTTTATCACCCT 58.210 40.909 0.00 0.00 0.00 4.34
5965 7852 5.186992 ACTTAGGTTGCCAATTTTATCACCC 59.813 40.000 0.00 0.00 0.00 4.61
5966 7853 6.280855 ACTTAGGTTGCCAATTTTATCACC 57.719 37.500 0.00 0.00 0.00 4.02
5967 7854 9.946165 GTATACTTAGGTTGCCAATTTTATCAC 57.054 33.333 0.00 0.00 0.00 3.06
5968 7855 8.832521 CGTATACTTAGGTTGCCAATTTTATCA 58.167 33.333 0.56 0.00 0.00 2.15
5969 7856 7.801783 GCGTATACTTAGGTTGCCAATTTTATC 59.198 37.037 0.56 0.00 0.00 1.75
5970 7857 7.519328 CGCGTATACTTAGGTTGCCAATTTTAT 60.519 37.037 0.00 0.00 0.00 1.40
5971 7858 6.238157 CGCGTATACTTAGGTTGCCAATTTTA 60.238 38.462 0.00 0.00 0.00 1.52
5972 7859 5.448089 CGCGTATACTTAGGTTGCCAATTTT 60.448 40.000 0.00 0.00 0.00 1.82
5973 7860 4.034742 CGCGTATACTTAGGTTGCCAATTT 59.965 41.667 0.00 0.00 0.00 1.82
5974 7861 3.558418 CGCGTATACTTAGGTTGCCAATT 59.442 43.478 0.00 0.00 0.00 2.32
5975 7862 3.128349 CGCGTATACTTAGGTTGCCAAT 58.872 45.455 0.00 0.00 0.00 3.16
5976 7863 2.094078 ACGCGTATACTTAGGTTGCCAA 60.094 45.455 11.67 0.00 0.00 4.52
5977 7864 1.477700 ACGCGTATACTTAGGTTGCCA 59.522 47.619 11.67 0.00 0.00 4.92
5978 7865 2.214387 ACGCGTATACTTAGGTTGCC 57.786 50.000 11.67 0.00 0.00 4.52
5979 7866 3.003689 TCCTACGCGTATACTTAGGTTGC 59.996 47.826 20.91 4.87 33.93 4.17
5980 7867 4.274459 AGTCCTACGCGTATACTTAGGTTG 59.726 45.833 20.91 3.59 33.93 3.77
5981 7868 4.455606 AGTCCTACGCGTATACTTAGGTT 58.544 43.478 20.91 8.23 33.93 3.50
5982 7869 4.078639 AGTCCTACGCGTATACTTAGGT 57.921 45.455 20.91 0.00 33.93 3.08
5983 7870 4.274459 ACAAGTCCTACGCGTATACTTAGG 59.726 45.833 30.65 24.59 33.57 2.69
5984 7871 5.415415 ACAAGTCCTACGCGTATACTTAG 57.585 43.478 30.65 26.61 0.00 2.18
5985 7872 6.918892 TTACAAGTCCTACGCGTATACTTA 57.081 37.500 30.65 20.89 0.00 2.24
5986 7873 5.818136 TTACAAGTCCTACGCGTATACTT 57.182 39.130 28.00 28.00 0.00 2.24
5987 7874 5.355350 AGTTTACAAGTCCTACGCGTATACT 59.645 40.000 20.91 21.57 0.00 2.12
5988 7875 5.453587 CAGTTTACAAGTCCTACGCGTATAC 59.546 44.000 20.91 19.74 0.00 1.47
5989 7876 5.353956 TCAGTTTACAAGTCCTACGCGTATA 59.646 40.000 20.91 8.44 0.00 1.47
5990 7877 4.156556 TCAGTTTACAAGTCCTACGCGTAT 59.843 41.667 20.91 5.41 0.00 3.06
5991 7878 3.501828 TCAGTTTACAAGTCCTACGCGTA 59.498 43.478 19.40 19.40 0.00 4.42
5992 7879 2.294233 TCAGTTTACAAGTCCTACGCGT 59.706 45.455 19.17 19.17 0.00 6.01
5993 7880 2.937591 TCAGTTTACAAGTCCTACGCG 58.062 47.619 3.53 3.53 0.00 6.01
5994 7881 4.375706 CGTTTCAGTTTACAAGTCCTACGC 60.376 45.833 0.00 0.00 0.00 4.42
5995 7882 4.149396 CCGTTTCAGTTTACAAGTCCTACG 59.851 45.833 0.00 0.00 0.00 3.51
5996 7883 5.291971 TCCGTTTCAGTTTACAAGTCCTAC 58.708 41.667 0.00 0.00 0.00 3.18
5997 7884 5.510179 CCTCCGTTTCAGTTTACAAGTCCTA 60.510 44.000 0.00 0.00 0.00 2.94
5998 7885 4.377897 CTCCGTTTCAGTTTACAAGTCCT 58.622 43.478 0.00 0.00 0.00 3.85
5999 7886 3.497262 CCTCCGTTTCAGTTTACAAGTCC 59.503 47.826 0.00 0.00 0.00 3.85
6000 7887 4.124970 ACCTCCGTTTCAGTTTACAAGTC 58.875 43.478 0.00 0.00 0.00 3.01
6001 7888 4.146745 ACCTCCGTTTCAGTTTACAAGT 57.853 40.909 0.00 0.00 0.00 3.16
6002 7889 5.295152 ACTACCTCCGTTTCAGTTTACAAG 58.705 41.667 0.00 0.00 0.00 3.16
6003 7890 5.280654 ACTACCTCCGTTTCAGTTTACAA 57.719 39.130 0.00 0.00 0.00 2.41
6004 7891 4.942761 ACTACCTCCGTTTCAGTTTACA 57.057 40.909 0.00 0.00 0.00 2.41
6005 7892 6.259550 TCTACTACCTCCGTTTCAGTTTAC 57.740 41.667 0.00 0.00 0.00 2.01
6006 7893 6.899393 TTCTACTACCTCCGTTTCAGTTTA 57.101 37.500 0.00 0.00 0.00 2.01
6007 7894 5.796424 TTCTACTACCTCCGTTTCAGTTT 57.204 39.130 0.00 0.00 0.00 2.66
6008 7895 5.303845 AGTTTCTACTACCTCCGTTTCAGTT 59.696 40.000 0.00 0.00 31.21 3.16
6009 7896 4.831710 AGTTTCTACTACCTCCGTTTCAGT 59.168 41.667 0.00 0.00 31.21 3.41
6010 7897 5.388408 AGTTTCTACTACCTCCGTTTCAG 57.612 43.478 0.00 0.00 31.21 3.02
6011 7898 7.284034 CCTATAGTTTCTACTACCTCCGTTTCA 59.716 40.741 0.00 0.00 39.59 2.69
6012 7899 7.284261 ACCTATAGTTTCTACTACCTCCGTTTC 59.716 40.741 0.00 0.00 39.59 2.78
6013 7900 7.122048 ACCTATAGTTTCTACTACCTCCGTTT 58.878 38.462 0.00 0.00 39.59 3.60
6014 7901 6.667661 ACCTATAGTTTCTACTACCTCCGTT 58.332 40.000 0.00 0.00 39.59 4.44
6015 7902 6.126652 TGACCTATAGTTTCTACTACCTCCGT 60.127 42.308 0.00 0.00 39.59 4.69
6016 7903 6.294473 TGACCTATAGTTTCTACTACCTCCG 58.706 44.000 0.00 0.00 39.59 4.63
6017 7904 8.709272 AATGACCTATAGTTTCTACTACCTCC 57.291 38.462 0.00 0.00 39.59 4.30
6046 7933 8.078060 AGATGGACAGGAAAGAAAAAGAAAAA 57.922 30.769 0.00 0.00 0.00 1.94
6062 7949 0.254178 CCTCCCACCAAGATGGACAG 59.746 60.000 2.85 0.00 43.02 3.51
6064 7951 1.077429 GCCTCCCACCAAGATGGAC 60.077 63.158 2.85 0.00 43.02 4.02
6065 7952 2.669133 CGCCTCCCACCAAGATGGA 61.669 63.158 2.85 0.00 43.02 3.41
6066 7953 2.124570 CGCCTCCCACCAAGATGG 60.125 66.667 0.00 0.00 45.02 3.51
6067 7954 2.124570 CCGCCTCCCACCAAGATG 60.125 66.667 0.00 0.00 0.00 2.90
6068 7955 2.610859 ACCGCCTCCCACCAAGAT 60.611 61.111 0.00 0.00 0.00 2.40
6148 8317 0.832135 TTCCGACTTGCTGAGGAGGT 60.832 55.000 0.00 0.00 33.89 3.85
6189 8358 0.108186 CATCCTTGCCGCAGTACTCA 60.108 55.000 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.