Multiple sequence alignment - TraesCS3D01G229500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G229500 chr3D 100.000 6469 0 0 1 6469 313098844 313105312 0.000000e+00 11947.0
1 TraesCS3D01G229500 chr3D 84.567 473 61 8 6003 6467 55161495 55161027 5.910000e-125 459.0
2 TraesCS3D01G229500 chr3B 92.703 1809 65 35 589 2360 406872459 406870681 0.000000e+00 2547.0
3 TraesCS3D01G229500 chr3B 94.737 969 39 6 3055 4012 406869998 406869031 0.000000e+00 1496.0
4 TraesCS3D01G229500 chr3B 93.326 944 34 6 4636 5577 406862752 406861836 0.000000e+00 1367.0
5 TraesCS3D01G229500 chr3B 94.664 506 20 5 2359 2858 406870587 406870083 0.000000e+00 778.0
6 TraesCS3D01G229500 chr3B 90.653 567 45 3 16 574 406873009 406872443 0.000000e+00 747.0
7 TraesCS3D01G229500 chr3B 97.241 435 12 0 4218 4652 406868792 406868358 0.000000e+00 737.0
8 TraesCS3D01G229500 chr3B 84.000 550 80 8 5921 6467 254195463 254194919 7.430000e-144 521.0
9 TraesCS3D01G229500 chr3B 82.714 538 87 5 5933 6469 449295355 449295887 2.110000e-129 473.0
10 TraesCS3D01G229500 chr3B 96.178 157 5 1 4061 4216 406869033 406868877 8.320000e-64 255.0
11 TraesCS3D01G229500 chr3B 96.667 60 2 0 5576 5635 406861795 406861736 4.130000e-17 100.0
12 TraesCS3D01G229500 chr3A 91.985 1597 69 20 593 2160 419470668 419469102 0.000000e+00 2185.0
13 TraesCS3D01G229500 chr3A 96.008 977 35 1 4663 5635 419466689 419465713 0.000000e+00 1585.0
14 TraesCS3D01G229500 chr3A 96.455 959 32 2 3055 4012 419468340 419467383 0.000000e+00 1581.0
15 TraesCS3D01G229500 chr3A 96.364 605 21 1 4061 4664 419467385 419466781 0.000000e+00 994.0
16 TraesCS3D01G229500 chr3A 91.262 721 48 9 2260 2974 419469049 419468338 0.000000e+00 968.0
17 TraesCS3D01G229500 chr3A 87.822 583 43 10 1 574 419471219 419470656 0.000000e+00 658.0
18 TraesCS3D01G229500 chr2D 86.289 547 65 8 5921 6467 317599307 317599843 2.600000e-163 586.0
19 TraesCS3D01G229500 chr2D 92.553 94 6 1 2969 3061 511922691 511922598 4.070000e-27 134.0
20 TraesCS3D01G229500 chr2B 84.755 551 77 6 5921 6469 385215520 385216065 4.410000e-151 545.0
21 TraesCS3D01G229500 chr2A 84.317 542 71 8 5928 6469 13818045 13817518 9.610000e-143 518.0
22 TraesCS3D01G229500 chr2A 84.416 539 66 10 5933 6469 416913849 416913327 1.240000e-141 514.0
23 TraesCS3D01G229500 chr7A 85.983 478 66 1 5992 6469 487475869 487475393 1.610000e-140 510.0
24 TraesCS3D01G229500 chr5B 80.797 552 93 5 5921 6467 577245971 577246514 2.790000e-113 420.0
25 TraesCS3D01G229500 chr5B 95.402 87 4 0 2970 3056 69131972 69131886 8.750000e-29 139.0
26 TraesCS3D01G229500 chr5B 94.505 91 4 1 2971 3061 218214249 218214338 8.750000e-29 139.0
27 TraesCS3D01G229500 chr1B 86.555 238 29 3 1237 1472 673784743 673784979 6.430000e-65 259.0
28 TraesCS3D01G229500 chr1B 87.324 71 9 0 5759 5829 396365654 396365584 1.490000e-11 82.4
29 TraesCS3D01G229500 chr1A 85.294 238 32 3 1237 1472 580444727 580444963 6.480000e-60 243.0
30 TraesCS3D01G229500 chr6B 92.708 96 5 2 2971 3064 710798881 710798786 3.150000e-28 137.0
31 TraesCS3D01G229500 chr6B 92.708 96 5 2 2971 3064 711418640 711418735 3.150000e-28 137.0
32 TraesCS3D01G229500 chr5A 89.423 104 10 1 2967 3069 17950212 17950315 5.260000e-26 130.0
33 TraesCS3D01G229500 chr7B 89.524 105 5 6 2960 3061 476201114 476201215 1.890000e-25 128.0
34 TraesCS3D01G229500 chr7B 86.842 114 10 5 2961 3071 411053058 411053169 8.810000e-24 122.0
35 TraesCS3D01G229500 chr4D 89.423 104 5 6 2965 3064 478671943 478671842 6.810000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G229500 chr3D 313098844 313105312 6468 False 11947.000000 11947 100.000000 1 6469 1 chr3D.!!$F1 6468
1 TraesCS3D01G229500 chr3B 406868358 406873009 4651 True 1093.333333 2547 94.362667 16 4652 6 chr3B.!!$R3 4636
2 TraesCS3D01G229500 chr3B 406861736 406862752 1016 True 733.500000 1367 94.996500 4636 5635 2 chr3B.!!$R2 999
3 TraesCS3D01G229500 chr3B 254194919 254195463 544 True 521.000000 521 84.000000 5921 6467 1 chr3B.!!$R1 546
4 TraesCS3D01G229500 chr3B 449295355 449295887 532 False 473.000000 473 82.714000 5933 6469 1 chr3B.!!$F1 536
5 TraesCS3D01G229500 chr3A 419465713 419471219 5506 True 1328.500000 2185 93.316000 1 5635 6 chr3A.!!$R1 5634
6 TraesCS3D01G229500 chr2D 317599307 317599843 536 False 586.000000 586 86.289000 5921 6467 1 chr2D.!!$F1 546
7 TraesCS3D01G229500 chr2B 385215520 385216065 545 False 545.000000 545 84.755000 5921 6469 1 chr2B.!!$F1 548
8 TraesCS3D01G229500 chr2A 13817518 13818045 527 True 518.000000 518 84.317000 5928 6469 1 chr2A.!!$R1 541
9 TraesCS3D01G229500 chr2A 416913327 416913849 522 True 514.000000 514 84.416000 5933 6469 1 chr2A.!!$R2 536
10 TraesCS3D01G229500 chr5B 577245971 577246514 543 False 420.000000 420 80.797000 5921 6467 1 chr5B.!!$F2 546

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
453 473 0.179084 AACACACTGGACACTGACCG 60.179 55.0 0.0 0.0 0.00 4.79 F
1223 1269 0.587768 AAGTTTTTAACCCGTCGCCG 59.412 50.0 0.0 0.0 0.00 6.46 F
2986 3194 0.410663 TTTCTACTCCCTCCGTCCCA 59.589 55.0 0.0 0.0 0.00 4.37 F
2987 3195 0.635009 TTCTACTCCCTCCGTCCCAT 59.365 55.0 0.0 0.0 0.00 4.00 F
4556 4859 0.668535 GAAAAACGCTCCAGCCAAGT 59.331 50.0 0.0 0.0 37.91 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1630 1677 0.029300 GCACGACAGCAAAAGCAAGA 59.971 50.000 0.0 0.0 0.0 3.02 R
3040 3248 0.042131 AATGTACTCCCTCCGTCCCA 59.958 55.000 0.0 0.0 0.0 4.37 R
4681 5077 1.028330 ATGCTTGGCGTCATCCACAG 61.028 55.000 0.0 0.0 35.5 3.66 R
4771 5167 3.132824 GGCCTGTAATTCCCCATTCAAAG 59.867 47.826 0.0 0.0 0.0 2.77 R
5807 6249 0.102300 GCAAAAGCCACCGTGTTTCT 59.898 50.000 0.0 0.0 0.0 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 40 2.745379 TCTGGCTAGACACAGTGCA 58.255 52.632 0.00 0.00 36.17 4.57
45 50 3.479489 AGACACAGTGCAATTGATCACA 58.521 40.909 10.34 0.00 35.76 3.58
63 68 0.971386 CAGGGTGCCTTGCTTGATTT 59.029 50.000 0.00 0.00 0.00 2.17
166 171 1.607251 CCCAGACTAACGTTGACACCC 60.607 57.143 11.99 0.00 0.00 4.61
199 204 2.024176 CCGAAAGTGATCCAATCGGT 57.976 50.000 14.59 0.00 45.96 4.69
200 205 1.665679 CCGAAAGTGATCCAATCGGTG 59.334 52.381 14.59 0.00 45.96 4.94
205 210 0.947244 GTGATCCAATCGGTGCCATC 59.053 55.000 0.00 0.00 0.00 3.51
220 225 5.359756 GGTGCCATCATATCATCGCTATAA 58.640 41.667 0.00 0.00 0.00 0.98
221 226 5.235186 GGTGCCATCATATCATCGCTATAAC 59.765 44.000 0.00 0.00 0.00 1.89
222 227 5.043248 TGCCATCATATCATCGCTATAACG 58.957 41.667 0.00 0.00 0.00 3.18
224 229 4.984785 CCATCATATCATCGCTATAACGGG 59.015 45.833 0.00 0.00 0.00 5.28
225 230 5.451937 CCATCATATCATCGCTATAACGGGT 60.452 44.000 0.00 0.00 0.00 5.28
226 231 5.654603 TCATATCATCGCTATAACGGGTT 57.345 39.130 0.00 0.00 0.00 4.11
275 284 2.230266 GAGAATATGAGGGCTCTCGGAC 59.770 54.545 9.55 0.00 42.79 4.79
296 305 1.265095 GCGCATGTTCATCACATAGGG 59.735 52.381 0.30 0.00 45.06 3.53
315 324 2.044946 GCGGCCCACTCTGGATTT 60.045 61.111 0.00 0.00 40.96 2.17
316 325 1.678970 GCGGCCCACTCTGGATTTT 60.679 57.895 0.00 0.00 40.96 1.82
317 326 1.657751 GCGGCCCACTCTGGATTTTC 61.658 60.000 0.00 0.00 40.96 2.29
319 328 1.756430 GGCCCACTCTGGATTTTCTC 58.244 55.000 0.00 0.00 40.96 2.87
324 333 4.809007 GCCCACTCTGGATTTTCTCTTCTT 60.809 45.833 0.00 0.00 40.96 2.52
336 347 7.275560 GGATTTTCTCTTCTTTTCTCTCTCTCG 59.724 40.741 0.00 0.00 0.00 4.04
361 372 5.825532 TCTTCATTTTCCACCCATCACATA 58.174 37.500 0.00 0.00 0.00 2.29
384 395 9.254133 CATACAAGTGACTCAACATATAAGAGG 57.746 37.037 0.00 0.00 33.76 3.69
427 438 4.020839 GCATGCATGGATAAATAAGGGCTT 60.021 41.667 27.34 0.00 0.00 4.35
441 452 6.724893 ATAAGGGCTTAAAACAAACACACT 57.275 33.333 0.00 0.00 0.00 3.55
453 473 0.179084 AACACACTGGACACTGACCG 60.179 55.000 0.00 0.00 0.00 4.79
454 474 1.300931 CACACTGGACACTGACCGG 60.301 63.158 0.00 0.00 39.46 5.28
455 475 2.357517 CACTGGACACTGACCGGC 60.358 66.667 0.00 0.00 37.30 6.13
456 476 3.991051 ACTGGACACTGACCGGCG 61.991 66.667 0.00 0.00 37.30 6.46
457 477 3.991051 CTGGACACTGACCGGCGT 61.991 66.667 6.01 0.00 0.00 5.68
458 478 4.293648 TGGACACTGACCGGCGTG 62.294 66.667 15.19 15.19 37.18 5.34
459 479 4.295119 GGACACTGACCGGCGTGT 62.295 66.667 20.53 20.53 46.20 4.49
461 481 4.295119 ACACTGACCGGCGTGTCC 62.295 66.667 20.48 7.96 40.06 4.02
519 540 6.030849 GTGTGTAGATGCTCGTATCCATATC 58.969 44.000 0.00 0.00 0.00 1.63
563 584 8.519526 GTCCATTTCTTAAACATGTTGTCCATA 58.480 33.333 12.82 0.00 30.71 2.74
564 585 9.253832 TCCATTTCTTAAACATGTTGTCCATAT 57.746 29.630 12.82 0.00 30.71 1.78
568 589 9.461312 TTTCTTAAACATGTTGTCCATATAGCT 57.539 29.630 12.82 0.00 30.71 3.32
569 590 9.461312 TTCTTAAACATGTTGTCCATATAGCTT 57.539 29.630 12.82 0.00 30.71 3.74
572 593 9.899661 TTAAACATGTTGTCCATATAGCTTACT 57.100 29.630 12.82 0.00 30.71 2.24
573 594 8.807948 AAACATGTTGTCCATATAGCTTACTT 57.192 30.769 12.82 0.00 30.71 2.24
574 595 8.807948 AACATGTTGTCCATATAGCTTACTTT 57.192 30.769 11.07 0.00 30.71 2.66
575 596 8.807948 ACATGTTGTCCATATAGCTTACTTTT 57.192 30.769 0.00 0.00 30.71 2.27
576 597 9.243105 ACATGTTGTCCATATAGCTTACTTTTT 57.757 29.630 0.00 0.00 30.71 1.94
607 628 6.638021 GGGGGTCCATATAGCTTACTTAAT 57.362 41.667 0.00 0.00 0.00 1.40
994 1034 2.750237 TAGCGACAGCCGAGCTCA 60.750 61.111 15.40 0.00 46.67 4.26
1202 1248 0.880718 GGGACCCGCTGATTCGATTC 60.881 60.000 0.00 0.29 0.00 2.52
1206 1252 3.053455 GACCCGCTGATTCGATTCTAAG 58.947 50.000 8.63 0.54 0.00 2.18
1207 1253 2.431057 ACCCGCTGATTCGATTCTAAGT 59.569 45.455 8.63 0.00 0.00 2.24
1208 1254 3.118738 ACCCGCTGATTCGATTCTAAGTT 60.119 43.478 8.63 0.00 0.00 2.66
1209 1255 3.871594 CCCGCTGATTCGATTCTAAGTTT 59.128 43.478 8.63 0.00 0.00 2.66
1210 1256 4.332819 CCCGCTGATTCGATTCTAAGTTTT 59.667 41.667 8.63 0.00 0.00 2.43
1211 1257 5.163754 CCCGCTGATTCGATTCTAAGTTTTT 60.164 40.000 8.63 0.00 0.00 1.94
1212 1258 6.036735 CCCGCTGATTCGATTCTAAGTTTTTA 59.963 38.462 8.63 0.00 0.00 1.52
1213 1259 7.413657 CCCGCTGATTCGATTCTAAGTTTTTAA 60.414 37.037 8.63 0.00 0.00 1.52
1214 1260 7.425595 CCGCTGATTCGATTCTAAGTTTTTAAC 59.574 37.037 8.63 0.00 0.00 2.01
1215 1261 7.425595 CGCTGATTCGATTCTAAGTTTTTAACC 59.574 37.037 8.63 0.00 0.00 2.85
1216 1262 7.696872 GCTGATTCGATTCTAAGTTTTTAACCC 59.303 37.037 8.63 0.00 0.00 4.11
1217 1263 7.745015 TGATTCGATTCTAAGTTTTTAACCCG 58.255 34.615 8.63 0.00 0.00 5.28
1218 1264 7.388500 TGATTCGATTCTAAGTTTTTAACCCGT 59.612 33.333 8.63 0.00 0.00 5.28
1219 1265 6.710692 TCGATTCTAAGTTTTTAACCCGTC 57.289 37.500 0.00 0.00 0.00 4.79
1220 1266 5.345741 TCGATTCTAAGTTTTTAACCCGTCG 59.654 40.000 0.00 0.00 0.00 5.12
1221 1267 4.730600 TTCTAAGTTTTTAACCCGTCGC 57.269 40.909 0.00 0.00 0.00 5.19
1222 1268 3.066380 TCTAAGTTTTTAACCCGTCGCC 58.934 45.455 0.00 0.00 0.00 5.54
1223 1269 0.587768 AAGTTTTTAACCCGTCGCCG 59.412 50.000 0.00 0.00 0.00 6.46
1590 1637 2.208431 CCCATCTTCTGAGATTGCGTC 58.792 52.381 0.00 0.00 40.67 5.19
1653 1709 0.721483 GCTTTTGCTGTCGTGCGTAC 60.721 55.000 0.00 0.00 43.35 3.67
1655 1711 0.579630 TTTTGCTGTCGTGCGTACTG 59.420 50.000 1.24 0.00 35.36 2.74
1678 1734 1.267806 CCCATTAATCTGGATGCGTGC 59.732 52.381 0.00 0.00 38.69 5.34
1694 1750 1.066908 CGTGCCTTGGTGAATTTGTGT 59.933 47.619 0.00 0.00 0.00 3.72
1726 1786 8.594881 AGAGACGTGTGATTAATTATGATTCC 57.405 34.615 0.00 0.00 0.00 3.01
1749 1809 1.982660 TTTGGTGGATGCGTTTGGTA 58.017 45.000 0.00 0.00 0.00 3.25
2042 2107 0.808755 GGTTGCGGTCCCAAATGTAG 59.191 55.000 0.00 0.00 0.00 2.74
2060 2125 9.512435 CAAATGTAGAAGGTCATTCATTTCATC 57.488 33.333 0.00 0.00 40.67 2.92
2062 2127 6.122277 TGTAGAAGGTCATTCATTTCATCCC 58.878 40.000 0.00 0.00 40.67 3.85
2088 2153 4.574421 CGTGGATTTGTCATACTGCCATAA 59.426 41.667 0.00 0.00 0.00 1.90
2207 2273 0.472898 GAAAGGAGGAATACCCCCGG 59.527 60.000 0.00 0.00 36.73 5.73
2318 2422 6.102663 GCTGAGTTGACATCAGTACATTAGT 58.897 40.000 7.68 0.00 44.92 2.24
2354 2458 0.745845 CCAGTGCTTGGGAGGATTCG 60.746 60.000 0.36 0.00 43.75 3.34
2364 2468 3.743521 TGGGAGGATTCGAAATATGCAG 58.256 45.455 0.00 0.00 0.00 4.41
2633 2834 6.699575 AAAACAACAGTGAAGTAGCTCATT 57.300 33.333 0.00 0.00 0.00 2.57
2971 3179 3.051081 CTGGCTGACTTGCTAGTTTCT 57.949 47.619 1.43 0.00 36.89 2.52
2972 3180 4.193826 CTGGCTGACTTGCTAGTTTCTA 57.806 45.455 1.43 0.00 36.89 2.10
2973 3181 3.926616 TGGCTGACTTGCTAGTTTCTAC 58.073 45.455 1.43 0.00 33.84 2.59
2974 3182 3.578716 TGGCTGACTTGCTAGTTTCTACT 59.421 43.478 1.43 0.00 38.44 2.57
2975 3183 4.177783 GGCTGACTTGCTAGTTTCTACTC 58.822 47.826 1.43 0.00 35.78 2.59
2976 3184 4.177783 GCTGACTTGCTAGTTTCTACTCC 58.822 47.826 1.43 0.00 35.78 3.85
2977 3185 4.749976 CTGACTTGCTAGTTTCTACTCCC 58.250 47.826 1.43 0.00 35.78 4.30
2978 3186 4.417437 TGACTTGCTAGTTTCTACTCCCT 58.583 43.478 1.43 0.00 35.78 4.20
2979 3187 4.463186 TGACTTGCTAGTTTCTACTCCCTC 59.537 45.833 1.43 0.00 35.78 4.30
2980 3188 3.770388 ACTTGCTAGTTTCTACTCCCTCC 59.230 47.826 0.00 0.00 35.78 4.30
2981 3189 2.376109 TGCTAGTTTCTACTCCCTCCG 58.624 52.381 0.00 0.00 35.78 4.63
2982 3190 2.291411 TGCTAGTTTCTACTCCCTCCGT 60.291 50.000 0.00 0.00 35.78 4.69
2983 3191 2.358582 GCTAGTTTCTACTCCCTCCGTC 59.641 54.545 0.00 0.00 35.78 4.79
2984 3192 1.849977 AGTTTCTACTCCCTCCGTCC 58.150 55.000 0.00 0.00 0.00 4.79
2985 3193 0.822811 GTTTCTACTCCCTCCGTCCC 59.177 60.000 0.00 0.00 0.00 4.46
2986 3194 0.410663 TTTCTACTCCCTCCGTCCCA 59.589 55.000 0.00 0.00 0.00 4.37
2987 3195 0.635009 TTCTACTCCCTCCGTCCCAT 59.365 55.000 0.00 0.00 0.00 4.00
2988 3196 1.526315 TCTACTCCCTCCGTCCCATA 58.474 55.000 0.00 0.00 0.00 2.74
2989 3197 1.854939 TCTACTCCCTCCGTCCCATAA 59.145 52.381 0.00 0.00 0.00 1.90
2990 3198 2.449730 TCTACTCCCTCCGTCCCATAAT 59.550 50.000 0.00 0.00 0.00 1.28
2991 3199 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
2992 3200 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
2993 3201 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
2994 3202 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
2995 3203 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
2996 3204 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
2997 3205 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
2999 3207 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
3000 3208 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
3001 3209 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
3002 3210 4.269363 CCGTCCCATAATGTAAGACGTTTC 59.731 45.833 9.63 0.00 46.62 2.78
3003 3211 5.107133 CGTCCCATAATGTAAGACGTTTCT 58.893 41.667 2.88 0.00 43.89 2.52
3004 3212 5.579511 CGTCCCATAATGTAAGACGTTTCTT 59.420 40.000 2.88 0.00 43.89 2.52
3005 3213 6.091713 CGTCCCATAATGTAAGACGTTTCTTT 59.908 38.462 2.88 0.00 43.89 2.52
3006 3214 7.276218 CGTCCCATAATGTAAGACGTTTCTTTA 59.724 37.037 2.88 0.00 43.89 1.85
3007 3215 8.385858 GTCCCATAATGTAAGACGTTTCTTTAC 58.614 37.037 0.00 0.00 39.17 2.01
3008 3216 8.095792 TCCCATAATGTAAGACGTTTCTTTACA 58.904 33.333 14.11 14.11 39.17 2.41
3009 3217 8.173130 CCCATAATGTAAGACGTTTCTTTACAC 58.827 37.037 14.06 1.55 39.17 2.90
3010 3218 8.932791 CCATAATGTAAGACGTTTCTTTACACT 58.067 33.333 14.06 8.98 39.17 3.55
3015 3223 8.876275 TGTAAGACGTTTCTTTACACTAATGT 57.124 30.769 10.07 0.00 39.17 2.71
3016 3224 9.964303 TGTAAGACGTTTCTTTACACTAATGTA 57.036 29.630 10.07 0.00 39.17 2.29
3046 3254 8.889717 ACAAAAAGTGTCTTATATTATGGGACG 58.110 33.333 0.00 0.00 34.38 4.79
3047 3255 8.342634 CAAAAAGTGTCTTATATTATGGGACGG 58.657 37.037 0.00 0.00 0.00 4.79
3048 3256 6.989155 AAGTGTCTTATATTATGGGACGGA 57.011 37.500 0.00 0.00 0.00 4.69
3049 3257 6.591750 AGTGTCTTATATTATGGGACGGAG 57.408 41.667 0.00 0.00 0.00 4.63
3050 3258 5.480772 AGTGTCTTATATTATGGGACGGAGG 59.519 44.000 0.00 0.00 0.00 4.30
3051 3259 4.775780 TGTCTTATATTATGGGACGGAGGG 59.224 45.833 0.00 0.00 0.00 4.30
3052 3260 5.021458 GTCTTATATTATGGGACGGAGGGA 58.979 45.833 0.00 0.00 0.00 4.20
3053 3261 5.127356 GTCTTATATTATGGGACGGAGGGAG 59.873 48.000 0.00 0.00 0.00 4.30
3117 3325 2.291282 ACCAGTGAAGTTGGGTCAACAA 60.291 45.455 12.46 0.00 45.66 2.83
3119 3327 3.384467 CCAGTGAAGTTGGGTCAACAAAT 59.616 43.478 12.46 0.00 45.66 2.32
3185 3394 4.298744 TCTCTGCTCATATCGTCAGTTG 57.701 45.455 0.00 0.00 0.00 3.16
3436 3647 3.010250 TGAGCTCTCCTTACTACACCTCA 59.990 47.826 16.19 0.00 0.00 3.86
3625 3836 6.823182 TGCTCTTTACAGCTATATCTTTGCAA 59.177 34.615 0.00 0.00 40.39 4.08
3819 4030 5.286438 GTTTTCGCAAAACCCAGATTAGTT 58.714 37.500 11.24 0.00 43.78 2.24
3857 4068 1.134310 TGCCTCAGTAGCCACATGATG 60.134 52.381 0.00 0.00 0.00 3.07
3858 4069 1.139654 GCCTCAGTAGCCACATGATGA 59.860 52.381 0.00 0.00 0.00 2.92
3988 4200 3.236816 GCTTTTGTGATTGTCGTGATGG 58.763 45.455 0.00 0.00 0.00 3.51
4009 4228 3.456277 GGATCCTCCACTAGTCACCAATT 59.544 47.826 3.84 0.00 36.28 2.32
4010 4229 4.654262 GGATCCTCCACTAGTCACCAATTA 59.346 45.833 3.84 0.00 36.28 1.40
4011 4230 5.453480 GGATCCTCCACTAGTCACCAATTAC 60.453 48.000 3.84 0.00 36.28 1.89
4012 4231 4.684724 TCCTCCACTAGTCACCAATTACT 58.315 43.478 0.00 0.00 0.00 2.24
4013 4232 4.710375 TCCTCCACTAGTCACCAATTACTC 59.290 45.833 0.00 0.00 0.00 2.59
4014 4233 4.141914 CCTCCACTAGTCACCAATTACTCC 60.142 50.000 0.00 0.00 0.00 3.85
4015 4234 3.773119 TCCACTAGTCACCAATTACTCCC 59.227 47.826 0.00 0.00 0.00 4.30
4016 4235 3.775316 CCACTAGTCACCAATTACTCCCT 59.225 47.826 0.00 0.00 0.00 4.20
4017 4236 4.141914 CCACTAGTCACCAATTACTCCCTC 60.142 50.000 0.00 0.00 0.00 4.30
4018 4237 4.031611 ACTAGTCACCAATTACTCCCTCC 58.968 47.826 0.00 0.00 0.00 4.30
4019 4238 1.831736 AGTCACCAATTACTCCCTCCG 59.168 52.381 0.00 0.00 0.00 4.63
4020 4239 1.553704 GTCACCAATTACTCCCTCCGT 59.446 52.381 0.00 0.00 0.00 4.69
4021 4240 2.027469 GTCACCAATTACTCCCTCCGTT 60.027 50.000 0.00 0.00 0.00 4.44
4022 4241 2.235402 TCACCAATTACTCCCTCCGTTC 59.765 50.000 0.00 0.00 0.00 3.95
4023 4242 1.558294 ACCAATTACTCCCTCCGTTCC 59.442 52.381 0.00 0.00 0.00 3.62
4024 4243 1.838077 CCAATTACTCCCTCCGTTCCT 59.162 52.381 0.00 0.00 0.00 3.36
4025 4244 3.036091 CCAATTACTCCCTCCGTTCCTA 58.964 50.000 0.00 0.00 0.00 2.94
4026 4245 3.453353 CCAATTACTCCCTCCGTTCCTAA 59.547 47.826 0.00 0.00 0.00 2.69
4027 4246 4.080751 CCAATTACTCCCTCCGTTCCTAAA 60.081 45.833 0.00 0.00 0.00 1.85
4028 4247 4.750021 ATTACTCCCTCCGTTCCTAAAC 57.250 45.455 0.00 0.00 0.00 2.01
4029 4248 2.019807 ACTCCCTCCGTTCCTAAACA 57.980 50.000 0.00 0.00 34.93 2.83
4030 4249 2.547990 ACTCCCTCCGTTCCTAAACAT 58.452 47.619 0.00 0.00 34.93 2.71
4031 4250 2.910977 ACTCCCTCCGTTCCTAAACATT 59.089 45.455 0.00 0.00 34.93 2.71
4032 4251 4.098894 ACTCCCTCCGTTCCTAAACATTA 58.901 43.478 0.00 0.00 34.93 1.90
4033 4252 4.161754 ACTCCCTCCGTTCCTAAACATTAG 59.838 45.833 0.00 0.00 34.93 1.73
4034 4253 4.098894 TCCCTCCGTTCCTAAACATTAGT 58.901 43.478 0.00 0.00 34.93 2.24
4035 4254 4.081309 TCCCTCCGTTCCTAAACATTAGTG 60.081 45.833 0.00 0.00 34.93 2.74
4036 4255 4.189231 CCTCCGTTCCTAAACATTAGTGG 58.811 47.826 0.00 0.00 34.93 4.00
4037 4256 4.323257 CCTCCGTTCCTAAACATTAGTGGT 60.323 45.833 0.00 0.00 34.93 4.16
4038 4257 5.231702 TCCGTTCCTAAACATTAGTGGTT 57.768 39.130 0.00 0.00 39.07 3.67
4039 4258 4.998672 TCCGTTCCTAAACATTAGTGGTTG 59.001 41.667 0.00 0.00 35.63 3.77
4040 4259 4.758165 CCGTTCCTAAACATTAGTGGTTGT 59.242 41.667 0.00 0.00 35.63 3.32
4041 4260 5.239963 CCGTTCCTAAACATTAGTGGTTGTT 59.760 40.000 0.00 0.00 35.63 2.83
4042 4261 6.427547 CCGTTCCTAAACATTAGTGGTTGTTA 59.572 38.462 0.00 0.00 35.63 2.41
4043 4262 7.041235 CCGTTCCTAAACATTAGTGGTTGTTAA 60.041 37.037 0.00 0.00 35.63 2.01
4044 4263 8.013378 CGTTCCTAAACATTAGTGGTTGTTAAG 58.987 37.037 0.00 0.00 35.63 1.85
4045 4264 7.989416 TCCTAAACATTAGTGGTTGTTAAGG 57.011 36.000 0.00 0.00 35.63 2.69
4046 4265 7.519927 TCCTAAACATTAGTGGTTGTTAAGGT 58.480 34.615 0.00 0.00 35.63 3.50
4047 4266 8.658619 TCCTAAACATTAGTGGTTGTTAAGGTA 58.341 33.333 0.00 0.00 35.63 3.08
4048 4267 8.943002 CCTAAACATTAGTGGTTGTTAAGGTAG 58.057 37.037 0.00 0.00 35.63 3.18
4049 4268 9.715121 CTAAACATTAGTGGTTGTTAAGGTAGA 57.285 33.333 0.00 0.00 35.63 2.59
4050 4269 8.983702 AAACATTAGTGGTTGTTAAGGTAGAA 57.016 30.769 0.00 0.00 35.09 2.10
4051 4270 7.974482 ACATTAGTGGTTGTTAAGGTAGAAC 57.026 36.000 0.00 0.00 0.00 3.01
4052 4271 6.647895 ACATTAGTGGTTGTTAAGGTAGAACG 59.352 38.462 0.00 0.00 0.00 3.95
4053 4272 3.999046 AGTGGTTGTTAAGGTAGAACGG 58.001 45.455 0.00 0.00 0.00 4.44
4054 4273 3.642848 AGTGGTTGTTAAGGTAGAACGGA 59.357 43.478 0.00 0.00 0.00 4.69
4055 4274 3.992427 GTGGTTGTTAAGGTAGAACGGAG 59.008 47.826 0.00 0.00 0.00 4.63
4056 4275 3.007182 TGGTTGTTAAGGTAGAACGGAGG 59.993 47.826 0.00 0.00 0.00 4.30
4057 4276 3.593096 GTTGTTAAGGTAGAACGGAGGG 58.407 50.000 0.00 0.00 0.00 4.30
4058 4277 3.173953 TGTTAAGGTAGAACGGAGGGA 57.826 47.619 0.00 0.00 0.00 4.20
4059 4278 3.094572 TGTTAAGGTAGAACGGAGGGAG 58.905 50.000 0.00 0.00 0.00 4.30
4196 4415 1.196911 TTCCCACGGGTCGATTACAT 58.803 50.000 1.07 0.00 36.47 2.29
4257 4560 5.465056 CGATTTTAGGCACAAACCAAACAAT 59.535 36.000 0.00 0.00 0.00 2.71
4281 4584 4.288105 GGGGTCAGGATATTGATGTGATCT 59.712 45.833 0.00 0.00 0.00 2.75
4309 4612 6.095720 TCCAAAGTAAAACCGAATTTGTCTGT 59.904 34.615 0.00 0.00 0.00 3.41
4312 4615 6.687081 AGTAAAACCGAATTTGTCTGTTGA 57.313 33.333 0.00 0.00 34.29 3.18
4556 4859 0.668535 GAAAAACGCTCCAGCCAAGT 59.331 50.000 0.00 0.00 37.91 3.16
4557 4860 1.067060 GAAAAACGCTCCAGCCAAGTT 59.933 47.619 0.00 0.00 37.91 2.66
4681 5077 4.778534 GGTAACTAAAAGGCCCAAACTC 57.221 45.455 0.00 0.00 0.00 3.01
4707 5103 1.078426 GACGCCAAGCATACTGGGT 60.078 57.895 0.00 0.00 39.54 4.51
4717 5113 5.221106 CCAAGCATACTGGGTCATGTAATTG 60.221 44.000 0.00 0.00 31.42 2.32
4754 5150 3.842820 CTCTTTCTTCATCGAGTCTGCA 58.157 45.455 0.00 0.00 0.00 4.41
5000 5396 2.364842 AGCCTCATGCCGGACTCT 60.365 61.111 5.05 0.00 42.71 3.24
5099 5495 1.768870 GTGTACTCCCAGGTGGCATAT 59.231 52.381 0.00 0.00 0.00 1.78
5291 5687 1.878656 CGCTCGACTTTGTCCTCCCT 61.879 60.000 0.00 0.00 0.00 4.20
5365 5761 1.802636 CCAACACGGTCATCATGGC 59.197 57.895 0.00 0.00 0.00 4.40
5490 5886 5.413523 TGAAGTACGCACAACTATGTAGAGA 59.586 40.000 0.00 0.00 37.82 3.10
5551 5951 8.901793 AGGTATAGGCGTATAGCTAAGTAATTC 58.098 37.037 27.83 5.41 44.59 2.17
5635 6077 3.437213 AGTGTACACCAGCATAGTACCA 58.563 45.455 22.28 0.00 37.82 3.25
5636 6078 3.835978 AGTGTACACCAGCATAGTACCAA 59.164 43.478 22.28 0.00 37.82 3.67
5637 6079 4.081642 AGTGTACACCAGCATAGTACCAAG 60.082 45.833 22.28 0.00 37.82 3.61
5638 6080 3.835978 TGTACACCAGCATAGTACCAAGT 59.164 43.478 0.00 0.00 37.82 3.16
5639 6081 4.285003 TGTACACCAGCATAGTACCAAGTT 59.715 41.667 0.00 0.00 37.82 2.66
5640 6082 5.481122 TGTACACCAGCATAGTACCAAGTTA 59.519 40.000 0.00 0.00 37.82 2.24
5641 6083 5.492855 ACACCAGCATAGTACCAAGTTAA 57.507 39.130 0.00 0.00 0.00 2.01
5642 6084 6.062258 ACACCAGCATAGTACCAAGTTAAT 57.938 37.500 0.00 0.00 0.00 1.40
5643 6085 6.481643 ACACCAGCATAGTACCAAGTTAATT 58.518 36.000 0.00 0.00 0.00 1.40
5644 6086 6.374333 ACACCAGCATAGTACCAAGTTAATTG 59.626 38.462 0.00 0.00 38.74 2.32
5645 6087 5.357032 ACCAGCATAGTACCAAGTTAATTGC 59.643 40.000 0.00 0.00 37.60 3.56
5646 6088 5.356751 CCAGCATAGTACCAAGTTAATTGCA 59.643 40.000 0.00 0.00 37.60 4.08
5647 6089 6.458751 CCAGCATAGTACCAAGTTAATTGCAG 60.459 42.308 0.00 0.00 37.60 4.41
5648 6090 6.316140 CAGCATAGTACCAAGTTAATTGCAGA 59.684 38.462 0.00 0.00 37.60 4.26
5649 6091 6.884295 AGCATAGTACCAAGTTAATTGCAGAA 59.116 34.615 0.00 0.00 37.60 3.02
5650 6092 7.557719 AGCATAGTACCAAGTTAATTGCAGAAT 59.442 33.333 0.00 0.00 37.60 2.40
5651 6093 8.836413 GCATAGTACCAAGTTAATTGCAGAATA 58.164 33.333 0.00 0.00 37.60 1.75
5653 6095 7.303634 AGTACCAAGTTAATTGCAGAATACG 57.696 36.000 0.00 0.00 37.60 3.06
5654 6096 7.101054 AGTACCAAGTTAATTGCAGAATACGA 58.899 34.615 0.00 0.00 37.60 3.43
5655 6097 6.178239 ACCAAGTTAATTGCAGAATACGAC 57.822 37.500 0.00 0.00 37.60 4.34
5656 6098 5.123344 ACCAAGTTAATTGCAGAATACGACC 59.877 40.000 0.00 0.00 37.60 4.79
5657 6099 5.123186 CCAAGTTAATTGCAGAATACGACCA 59.877 40.000 0.00 0.00 37.60 4.02
5658 6100 5.796350 AGTTAATTGCAGAATACGACCAC 57.204 39.130 0.00 0.00 0.00 4.16
5659 6101 4.328983 AGTTAATTGCAGAATACGACCACG 59.671 41.667 0.00 0.00 45.75 4.94
5660 6102 9.407983 CAAGTTAATTGCAGAATACGACCACGT 62.408 40.741 0.00 0.00 43.00 4.49
5673 6115 4.461992 CGACCACGTTTGAGTTATGTTT 57.538 40.909 0.00 0.00 34.56 2.83
5674 6116 5.579384 CGACCACGTTTGAGTTATGTTTA 57.421 39.130 0.00 0.00 34.56 2.01
5675 6117 5.368374 CGACCACGTTTGAGTTATGTTTAC 58.632 41.667 0.00 0.00 34.56 2.01
5676 6118 5.050904 CGACCACGTTTGAGTTATGTTTACA 60.051 40.000 0.00 0.00 34.56 2.41
5677 6119 6.295039 ACCACGTTTGAGTTATGTTTACAG 57.705 37.500 0.00 0.00 0.00 2.74
5678 6120 6.050432 ACCACGTTTGAGTTATGTTTACAGA 58.950 36.000 0.00 0.00 0.00 3.41
5679 6121 6.539464 ACCACGTTTGAGTTATGTTTACAGAA 59.461 34.615 0.00 0.00 0.00 3.02
5680 6122 7.066043 ACCACGTTTGAGTTATGTTTACAGAAA 59.934 33.333 0.00 0.00 0.00 2.52
5681 6123 7.911205 CCACGTTTGAGTTATGTTTACAGAAAA 59.089 33.333 0.00 0.00 0.00 2.29
5682 6124 9.279904 CACGTTTGAGTTATGTTTACAGAAAAA 57.720 29.630 0.00 0.00 0.00 1.94
5689 6131 9.537848 GAGTTATGTTTACAGAAAAATACGTGG 57.462 33.333 0.00 0.00 26.51 4.94
5690 6132 9.059260 AGTTATGTTTACAGAAAAATACGTGGT 57.941 29.630 0.00 0.00 26.51 4.16
5691 6133 9.321590 GTTATGTTTACAGAAAAATACGTGGTC 57.678 33.333 0.00 0.00 26.51 4.02
5692 6134 6.303021 TGTTTACAGAAAAATACGTGGTCC 57.697 37.500 0.00 0.00 0.00 4.46
5693 6135 6.056884 TGTTTACAGAAAAATACGTGGTCCT 58.943 36.000 0.00 0.00 0.00 3.85
5694 6136 6.543100 TGTTTACAGAAAAATACGTGGTCCTT 59.457 34.615 0.00 0.00 0.00 3.36
5695 6137 7.714377 TGTTTACAGAAAAATACGTGGTCCTTA 59.286 33.333 0.00 0.00 0.00 2.69
5696 6138 8.558700 GTTTACAGAAAAATACGTGGTCCTTAA 58.441 33.333 0.00 0.00 0.00 1.85
5697 6139 8.851541 TTACAGAAAAATACGTGGTCCTTAAT 57.148 30.769 0.00 0.00 0.00 1.40
5698 6140 7.754851 ACAGAAAAATACGTGGTCCTTAATT 57.245 32.000 0.00 0.00 0.00 1.40
5699 6141 8.851541 ACAGAAAAATACGTGGTCCTTAATTA 57.148 30.769 0.00 0.00 0.00 1.40
5700 6142 9.457436 ACAGAAAAATACGTGGTCCTTAATTAT 57.543 29.630 0.00 0.00 0.00 1.28
5706 6148 8.795842 AATACGTGGTCCTTAATTATTTGTCA 57.204 30.769 0.00 0.00 0.00 3.58
5707 6149 8.795842 ATACGTGGTCCTTAATTATTTGTCAA 57.204 30.769 0.00 0.00 0.00 3.18
5708 6150 7.141100 ACGTGGTCCTTAATTATTTGTCAAG 57.859 36.000 0.00 0.00 0.00 3.02
5709 6151 6.713450 ACGTGGTCCTTAATTATTTGTCAAGT 59.287 34.615 0.00 0.00 0.00 3.16
5710 6152 7.094933 ACGTGGTCCTTAATTATTTGTCAAGTC 60.095 37.037 0.00 0.00 0.00 3.01
5711 6153 7.094975 CGTGGTCCTTAATTATTTGTCAAGTCA 60.095 37.037 0.00 0.00 0.00 3.41
5712 6154 8.237267 GTGGTCCTTAATTATTTGTCAAGTCAG 58.763 37.037 0.00 0.00 0.00 3.51
5713 6155 7.094377 TGGTCCTTAATTATTTGTCAAGTCAGC 60.094 37.037 0.00 0.00 0.00 4.26
5714 6156 7.121315 GGTCCTTAATTATTTGTCAAGTCAGCT 59.879 37.037 0.00 0.00 0.00 4.24
5715 6157 8.178313 GTCCTTAATTATTTGTCAAGTCAGCTC 58.822 37.037 0.00 0.00 0.00 4.09
5716 6158 7.336931 TCCTTAATTATTTGTCAAGTCAGCTCC 59.663 37.037 0.00 0.00 0.00 4.70
5717 6159 7.337942 CCTTAATTATTTGTCAAGTCAGCTCCT 59.662 37.037 0.00 0.00 0.00 3.69
5718 6160 8.635765 TTAATTATTTGTCAAGTCAGCTCCTT 57.364 30.769 0.00 0.00 0.00 3.36
5719 6161 9.733556 TTAATTATTTGTCAAGTCAGCTCCTTA 57.266 29.630 0.00 0.00 0.00 2.69
5720 6162 8.635765 AATTATTTGTCAAGTCAGCTCCTTAA 57.364 30.769 0.00 0.00 0.00 1.85
5721 6163 8.635765 ATTATTTGTCAAGTCAGCTCCTTAAA 57.364 30.769 0.00 0.00 0.00 1.52
5722 6164 6.959639 ATTTGTCAAGTCAGCTCCTTAAAA 57.040 33.333 0.00 0.00 0.00 1.52
5723 6165 6.959639 TTTGTCAAGTCAGCTCCTTAAAAT 57.040 33.333 0.00 0.00 0.00 1.82
5724 6166 6.560253 TTGTCAAGTCAGCTCCTTAAAATC 57.440 37.500 0.00 0.00 0.00 2.17
5725 6167 5.003804 TGTCAAGTCAGCTCCTTAAAATCC 58.996 41.667 0.00 0.00 0.00 3.01
5726 6168 4.093556 GTCAAGTCAGCTCCTTAAAATCCG 59.906 45.833 0.00 0.00 0.00 4.18
5727 6169 3.268023 AGTCAGCTCCTTAAAATCCGG 57.732 47.619 0.00 0.00 0.00 5.14
5728 6170 1.671328 GTCAGCTCCTTAAAATCCGGC 59.329 52.381 0.00 0.00 0.00 6.13
5729 6171 1.559682 TCAGCTCCTTAAAATCCGGCT 59.440 47.619 0.00 0.00 0.00 5.52
5730 6172 1.943340 CAGCTCCTTAAAATCCGGCTC 59.057 52.381 0.00 0.00 0.00 4.70
5731 6173 1.840635 AGCTCCTTAAAATCCGGCTCT 59.159 47.619 0.00 0.00 0.00 4.09
5732 6174 3.039011 AGCTCCTTAAAATCCGGCTCTA 58.961 45.455 0.00 0.00 0.00 2.43
5733 6175 3.132160 GCTCCTTAAAATCCGGCTCTAC 58.868 50.000 0.00 0.00 0.00 2.59
5734 6176 3.181464 GCTCCTTAAAATCCGGCTCTACT 60.181 47.826 0.00 0.00 0.00 2.57
5735 6177 4.683671 GCTCCTTAAAATCCGGCTCTACTT 60.684 45.833 0.00 0.00 0.00 2.24
5736 6178 4.766375 TCCTTAAAATCCGGCTCTACTTG 58.234 43.478 0.00 0.00 0.00 3.16
5737 6179 4.224370 TCCTTAAAATCCGGCTCTACTTGT 59.776 41.667 0.00 0.00 0.00 3.16
5738 6180 4.571176 CCTTAAAATCCGGCTCTACTTGTC 59.429 45.833 0.00 0.00 0.00 3.18
5739 6181 3.695830 AAAATCCGGCTCTACTTGTCA 57.304 42.857 0.00 0.00 0.00 3.58
5740 6182 2.969628 AATCCGGCTCTACTTGTCAG 57.030 50.000 0.00 0.00 0.00 3.51
5741 6183 2.145397 ATCCGGCTCTACTTGTCAGA 57.855 50.000 0.00 0.00 0.00 3.27
5742 6184 1.919240 TCCGGCTCTACTTGTCAGAA 58.081 50.000 0.00 0.00 0.00 3.02
5743 6185 2.244695 TCCGGCTCTACTTGTCAGAAA 58.755 47.619 0.00 0.00 0.00 2.52
5744 6186 2.231478 TCCGGCTCTACTTGTCAGAAAG 59.769 50.000 0.00 0.00 0.00 2.62
5745 6187 2.028930 CCGGCTCTACTTGTCAGAAAGT 60.029 50.000 0.00 0.00 42.89 2.66
5746 6188 3.555168 CCGGCTCTACTTGTCAGAAAGTT 60.555 47.826 0.00 0.00 40.77 2.66
5747 6189 4.058817 CGGCTCTACTTGTCAGAAAGTTT 58.941 43.478 0.00 0.00 40.77 2.66
5748 6190 4.084328 CGGCTCTACTTGTCAGAAAGTTTG 60.084 45.833 0.00 0.00 40.77 2.93
5749 6191 5.057149 GGCTCTACTTGTCAGAAAGTTTGA 58.943 41.667 0.00 0.00 40.77 2.69
5750 6192 5.703130 GGCTCTACTTGTCAGAAAGTTTGAT 59.297 40.000 0.00 0.00 40.77 2.57
5751 6193 6.874134 GGCTCTACTTGTCAGAAAGTTTGATA 59.126 38.462 0.00 0.00 40.77 2.15
5752 6194 7.387948 GGCTCTACTTGTCAGAAAGTTTGATAA 59.612 37.037 0.00 0.00 40.77 1.75
5753 6195 8.774586 GCTCTACTTGTCAGAAAGTTTGATAAA 58.225 33.333 0.00 0.00 40.77 1.40
5771 6213 9.684448 TTTGATAAAAATGATCAAACGTAGCAA 57.316 25.926 0.00 3.18 44.46 3.91
5772 6214 9.684448 TTGATAAAAATGATCAAACGTAGCAAA 57.316 25.926 0.00 0.00 39.71 3.68
5773 6215 9.853555 TGATAAAAATGATCAAACGTAGCAAAT 57.146 25.926 0.00 0.00 30.35 2.32
5775 6217 9.853555 ATAAAAATGATCAAACGTAGCAAATCA 57.146 25.926 0.00 0.00 0.00 2.57
5776 6218 7.566858 AAAATGATCAAACGTAGCAAATCAC 57.433 32.000 0.00 0.00 0.00 3.06
5777 6219 4.678509 TGATCAAACGTAGCAAATCACC 57.321 40.909 0.00 0.00 0.00 4.02
5778 6220 3.438781 TGATCAAACGTAGCAAATCACCC 59.561 43.478 0.00 0.00 0.00 4.61
5779 6221 1.801771 TCAAACGTAGCAAATCACCCG 59.198 47.619 0.00 0.00 0.00 5.28
5780 6222 1.801771 CAAACGTAGCAAATCACCCGA 59.198 47.619 0.00 0.00 0.00 5.14
5781 6223 2.396590 AACGTAGCAAATCACCCGAT 57.603 45.000 0.00 0.00 0.00 4.18
5782 6224 1.935933 ACGTAGCAAATCACCCGATC 58.064 50.000 0.00 0.00 0.00 3.69
5783 6225 1.206132 ACGTAGCAAATCACCCGATCA 59.794 47.619 0.00 0.00 0.00 2.92
5784 6226 2.276201 CGTAGCAAATCACCCGATCAA 58.724 47.619 0.00 0.00 0.00 2.57
5785 6227 2.872245 CGTAGCAAATCACCCGATCAAT 59.128 45.455 0.00 0.00 0.00 2.57
5786 6228 3.303329 CGTAGCAAATCACCCGATCAATG 60.303 47.826 0.00 0.00 0.00 2.82
5787 6229 1.406539 AGCAAATCACCCGATCAATGC 59.593 47.619 0.00 0.00 36.57 3.56
5788 6230 1.406539 GCAAATCACCCGATCAATGCT 59.593 47.619 0.00 0.00 34.91 3.79
5789 6231 2.159198 GCAAATCACCCGATCAATGCTT 60.159 45.455 0.00 0.00 34.91 3.91
5790 6232 3.676873 GCAAATCACCCGATCAATGCTTT 60.677 43.478 0.00 0.00 34.91 3.51
5791 6233 4.107622 CAAATCACCCGATCAATGCTTTC 58.892 43.478 0.00 0.00 0.00 2.62
5792 6234 2.787473 TCACCCGATCAATGCTTTCT 57.213 45.000 0.00 0.00 0.00 2.52
5793 6235 2.358957 TCACCCGATCAATGCTTTCTG 58.641 47.619 0.00 0.00 0.00 3.02
5794 6236 1.098050 ACCCGATCAATGCTTTCTGC 58.902 50.000 0.00 0.00 43.25 4.26
5811 6253 8.628882 GCTTTCTGCAAAAAGTTTAGTAGAAA 57.371 30.769 21.58 21.58 42.31 2.52
5812 6254 8.532341 GCTTTCTGCAAAAAGTTTAGTAGAAAC 58.468 33.333 20.26 15.87 42.31 2.78
5813 6255 9.567848 CTTTCTGCAAAAAGTTTAGTAGAAACA 57.432 29.630 20.26 9.60 32.67 2.83
5814 6256 8.905103 TTCTGCAAAAAGTTTAGTAGAAACAC 57.095 30.769 14.69 0.00 32.81 3.32
5815 6257 7.184106 TCTGCAAAAAGTTTAGTAGAAACACG 58.816 34.615 6.39 0.00 32.81 4.49
5816 6258 6.259638 TGCAAAAAGTTTAGTAGAAACACGG 58.740 36.000 3.26 0.00 32.81 4.94
5817 6259 6.127952 TGCAAAAAGTTTAGTAGAAACACGGT 60.128 34.615 3.26 0.00 32.81 4.83
5818 6260 6.195798 GCAAAAAGTTTAGTAGAAACACGGTG 59.804 38.462 6.58 6.58 32.81 4.94
5819 6261 5.996669 AAAGTTTAGTAGAAACACGGTGG 57.003 39.130 13.48 0.00 32.81 4.61
5820 6262 3.396560 AGTTTAGTAGAAACACGGTGGC 58.603 45.455 13.48 1.55 32.81 5.01
5821 6263 3.070590 AGTTTAGTAGAAACACGGTGGCT 59.929 43.478 13.48 9.06 32.81 4.75
5822 6264 3.756933 TTAGTAGAAACACGGTGGCTT 57.243 42.857 13.48 5.28 0.00 4.35
5823 6265 2.632987 AGTAGAAACACGGTGGCTTT 57.367 45.000 13.48 4.77 0.00 3.51
5824 6266 2.927028 AGTAGAAACACGGTGGCTTTT 58.073 42.857 13.48 4.03 0.00 2.27
5825 6267 2.616842 AGTAGAAACACGGTGGCTTTTG 59.383 45.455 13.48 0.00 0.00 2.44
5826 6268 0.102300 AGAAACACGGTGGCTTTTGC 59.898 50.000 13.48 0.00 46.64 3.68
5843 6285 7.060600 GCTTTTGCAAATAATTAAGGACCAC 57.939 36.000 13.65 0.00 46.58 4.16
5844 6286 6.183360 GCTTTTGCAAATAATTAAGGACCACG 60.183 38.462 13.65 0.00 46.58 4.94
5845 6287 5.968528 TTGCAAATAATTAAGGACCACGT 57.031 34.783 0.00 0.00 0.00 4.49
5846 6288 7.450124 TTTGCAAATAATTAAGGACCACGTA 57.550 32.000 8.05 0.00 0.00 3.57
5847 6289 7.633193 TTGCAAATAATTAAGGACCACGTAT 57.367 32.000 0.00 0.00 0.00 3.06
5848 6290 7.633193 TGCAAATAATTAAGGACCACGTATT 57.367 32.000 0.00 0.00 0.00 1.89
5849 6291 8.057536 TGCAAATAATTAAGGACCACGTATTT 57.942 30.769 0.00 0.00 0.00 1.40
5850 6292 8.524487 TGCAAATAATTAAGGACCACGTATTTT 58.476 29.630 0.00 0.00 0.00 1.82
5851 6293 9.361315 GCAAATAATTAAGGACCACGTATTTTT 57.639 29.630 0.00 0.00 0.00 1.94
5871 6313 6.622427 TTTTTCTGAAAACCTAACCCCAAA 57.378 33.333 14.70 0.00 30.07 3.28
5872 6314 6.816616 TTTTCTGAAAACCTAACCCCAAAT 57.183 33.333 11.33 0.00 0.00 2.32
5873 6315 6.816616 TTTCTGAAAACCTAACCCCAAATT 57.183 33.333 0.00 0.00 0.00 1.82
5874 6316 6.413783 TTCTGAAAACCTAACCCCAAATTC 57.586 37.500 0.00 0.00 0.00 2.17
5875 6317 4.521256 TCTGAAAACCTAACCCCAAATTCG 59.479 41.667 0.00 0.00 0.00 3.34
5876 6318 3.574826 TGAAAACCTAACCCCAAATTCGG 59.425 43.478 0.00 0.00 0.00 4.30
5877 6319 1.552578 AACCTAACCCCAAATTCGGC 58.447 50.000 0.00 0.00 0.00 5.54
5878 6320 0.678684 ACCTAACCCCAAATTCGGCG 60.679 55.000 0.00 0.00 0.00 6.46
5879 6321 1.381165 CCTAACCCCAAATTCGGCGG 61.381 60.000 7.21 0.00 0.00 6.13
5880 6322 0.678684 CTAACCCCAAATTCGGCGGT 60.679 55.000 7.21 0.00 32.73 5.68
5881 6323 0.251253 TAACCCCAAATTCGGCGGTT 60.251 50.000 7.21 11.59 40.54 4.44
5882 6324 1.116536 AACCCCAAATTCGGCGGTTT 61.117 50.000 7.21 6.20 36.67 3.27
5883 6325 1.116536 ACCCCAAATTCGGCGGTTTT 61.117 50.000 7.21 4.51 0.00 2.43
5884 6326 0.389296 CCCCAAATTCGGCGGTTTTC 60.389 55.000 7.21 0.00 0.00 2.29
5885 6327 0.601057 CCCAAATTCGGCGGTTTTCT 59.399 50.000 7.21 0.00 0.00 2.52
5886 6328 1.668628 CCCAAATTCGGCGGTTTTCTG 60.669 52.381 7.21 0.00 0.00 3.02
5898 6340 4.561735 CGGTTTTCTGCTTTTAACTCCA 57.438 40.909 0.00 0.00 0.00 3.86
5899 6341 5.121221 CGGTTTTCTGCTTTTAACTCCAT 57.879 39.130 0.00 0.00 0.00 3.41
5900 6342 6.249035 CGGTTTTCTGCTTTTAACTCCATA 57.751 37.500 0.00 0.00 0.00 2.74
5901 6343 6.314784 CGGTTTTCTGCTTTTAACTCCATAG 58.685 40.000 0.00 0.00 0.00 2.23
5902 6344 6.072673 CGGTTTTCTGCTTTTAACTCCATAGT 60.073 38.462 0.00 0.00 37.65 2.12
5903 6345 7.118680 CGGTTTTCTGCTTTTAACTCCATAGTA 59.881 37.037 0.00 0.00 33.75 1.82
5904 6346 8.235226 GGTTTTCTGCTTTTAACTCCATAGTAC 58.765 37.037 0.00 0.00 33.75 2.73
5905 6347 7.916914 TTTCTGCTTTTAACTCCATAGTACC 57.083 36.000 0.00 0.00 33.75 3.34
5906 6348 5.985911 TCTGCTTTTAACTCCATAGTACCC 58.014 41.667 0.00 0.00 33.75 3.69
5907 6349 5.104652 TCTGCTTTTAACTCCATAGTACCCC 60.105 44.000 0.00 0.00 33.75 4.95
5908 6350 4.786454 TGCTTTTAACTCCATAGTACCCCT 59.214 41.667 0.00 0.00 33.75 4.79
5909 6351 5.252164 TGCTTTTAACTCCATAGTACCCCTT 59.748 40.000 0.00 0.00 33.75 3.95
5910 6352 5.821470 GCTTTTAACTCCATAGTACCCCTTC 59.179 44.000 0.00 0.00 33.75 3.46
5911 6353 6.577638 GCTTTTAACTCCATAGTACCCCTTCA 60.578 42.308 0.00 0.00 33.75 3.02
5912 6354 7.519347 TTTTAACTCCATAGTACCCCTTCAT 57.481 36.000 0.00 0.00 33.75 2.57
5913 6355 7.519347 TTTAACTCCATAGTACCCCTTCATT 57.481 36.000 0.00 0.00 33.75 2.57
5914 6356 8.626917 TTTAACTCCATAGTACCCCTTCATTA 57.373 34.615 0.00 0.00 33.75 1.90
5915 6357 6.496144 AACTCCATAGTACCCCTTCATTAC 57.504 41.667 0.00 0.00 33.75 1.89
5916 6358 5.535029 ACTCCATAGTACCCCTTCATTACA 58.465 41.667 0.00 0.00 32.84 2.41
5917 6359 6.151049 ACTCCATAGTACCCCTTCATTACAT 58.849 40.000 0.00 0.00 32.84 2.29
5918 6360 7.310634 ACTCCATAGTACCCCTTCATTACATA 58.689 38.462 0.00 0.00 32.84 2.29
5919 6361 7.792736 ACTCCATAGTACCCCTTCATTACATAA 59.207 37.037 0.00 0.00 32.84 1.90
5923 6365 9.793259 CATAGTACCCCTTCATTACATAACAAT 57.207 33.333 0.00 0.00 0.00 2.71
5944 6386 2.217750 GGCAACCCGCAAATTTTCTTT 58.782 42.857 0.00 0.00 45.17 2.52
5954 6396 3.428534 GCAAATTTTCTTTCGCATCCGTT 59.571 39.130 0.00 0.00 35.54 4.44
5957 6399 1.504359 TTTCTTTCGCATCCGTTCGT 58.496 45.000 0.00 0.00 35.54 3.85
5976 6418 1.630878 GTGGACAAGGAGGGATCAGTT 59.369 52.381 0.00 0.00 0.00 3.16
5983 6425 0.462759 GGAGGGATCAGTTTGCGGAG 60.463 60.000 0.00 0.00 0.00 4.63
5990 6432 3.244215 GGATCAGTTTGCGGAGATGGATA 60.244 47.826 0.00 0.00 0.00 2.59
5996 6438 0.541998 TGCGGAGATGGATACGGGAT 60.542 55.000 0.00 0.00 42.51 3.85
6027 6469 6.190954 TCCAATCGTATCCTGTATATGTCG 57.809 41.667 0.00 0.00 0.00 4.35
6035 6477 3.154710 TCCTGTATATGTCGGCCAGTAG 58.845 50.000 2.24 0.00 0.00 2.57
6219 6666 0.533755 CGGCAATCCTAGGAAGCTGG 60.534 60.000 28.34 20.42 34.28 4.85
6280 6733 4.201679 CACGTCCGCATCCGCCTA 62.202 66.667 0.00 0.00 33.11 3.93
6281 6734 3.224324 ACGTCCGCATCCGCCTAT 61.224 61.111 0.00 0.00 33.11 2.57
6404 6857 5.240183 AGAGTCAACATTCAAGGTCAACATG 59.760 40.000 0.00 0.00 0.00 3.21
6445 6898 2.437413 GGCGATCTTCACCCTCTTTTT 58.563 47.619 0.00 0.00 0.00 1.94
6446 6899 2.162408 GGCGATCTTCACCCTCTTTTTG 59.838 50.000 0.00 0.00 0.00 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 40 2.173519 CAAGGCACCCTGTGATCAATT 58.826 47.619 0.00 0.00 35.23 2.32
45 50 0.971386 CAAATCAAGCAAGGCACCCT 59.029 50.000 0.00 0.00 33.87 4.34
63 68 3.243704 GCAAAGCAACACCAAATAGGACA 60.244 43.478 0.00 0.00 41.22 4.02
166 171 4.865761 TCGGCGCGGGAAAGATCG 62.866 66.667 15.48 2.68 0.00 3.69
199 204 5.043248 CGTTATAGCGATGATATGATGGCA 58.957 41.667 11.39 0.00 29.96 4.92
200 205 4.445718 CCGTTATAGCGATGATATGATGGC 59.554 45.833 10.85 0.90 0.00 4.40
205 210 5.168569 ACAACCCGTTATAGCGATGATATG 58.831 41.667 10.85 3.69 0.00 1.78
222 227 2.517650 TGAAATTTTGCGGACAACCC 57.482 45.000 0.00 0.00 34.87 4.11
224 229 6.942886 TCAATATGAAATTTTGCGGACAAC 57.057 33.333 0.00 0.00 35.58 3.32
225 230 9.081997 GTTATCAATATGAAATTTTGCGGACAA 57.918 29.630 0.00 0.00 35.58 3.18
226 231 7.430793 CGTTATCAATATGAAATTTTGCGGACA 59.569 33.333 0.00 0.00 35.58 4.02
238 247 9.875691 CTCATATTCTCCCGTTATCAATATGAA 57.124 33.333 11.74 0.00 42.06 2.57
315 324 4.764823 AGCGAGAGAGAGAAAAGAAGAGAA 59.235 41.667 0.00 0.00 0.00 2.87
316 325 4.331968 AGCGAGAGAGAGAAAAGAAGAGA 58.668 43.478 0.00 0.00 0.00 3.10
317 326 4.396166 AGAGCGAGAGAGAGAAAAGAAGAG 59.604 45.833 0.00 0.00 0.00 2.85
319 328 4.701956 AGAGCGAGAGAGAGAAAAGAAG 57.298 45.455 0.00 0.00 0.00 2.85
324 333 5.398603 AAATGAAGAGCGAGAGAGAGAAA 57.601 39.130 0.00 0.00 0.00 2.52
336 347 3.091545 TGATGGGTGGAAAATGAAGAGC 58.908 45.455 0.00 0.00 0.00 4.09
361 372 6.440647 TCCCTCTTATATGTTGAGTCACTTGT 59.559 38.462 0.00 0.00 0.00 3.16
371 382 8.348507 GCTTCTCATTTTCCCTCTTATATGTTG 58.651 37.037 0.00 0.00 0.00 3.33
413 424 9.699703 TGTGTTTGTTTTAAGCCCTTATTTATC 57.300 29.630 0.00 0.00 0.00 1.75
427 438 5.004448 TCAGTGTCCAGTGTGTTTGTTTTA 58.996 37.500 2.28 0.00 33.58 1.52
441 452 4.293648 CACGCCGGTCAGTGTCCA 62.294 66.667 15.48 0.00 33.97 4.02
453 473 1.737793 CTAAACATTCAGGGACACGCC 59.262 52.381 0.00 0.00 0.00 5.68
454 474 1.737793 CCTAAACATTCAGGGACACGC 59.262 52.381 0.00 0.00 0.00 5.34
461 481 4.778213 TCTGATCCCCTAAACATTCAGG 57.222 45.455 0.00 0.00 33.19 3.86
465 485 5.522641 AGCAAATCTGATCCCCTAAACATT 58.477 37.500 0.00 0.00 0.00 2.71
519 540 1.470098 GACACCAAGGCATGCTAACAG 59.530 52.381 18.92 5.72 0.00 3.16
584 605 6.638021 ATTAAGTAAGCTATATGGACCCCC 57.362 41.667 0.00 0.00 0.00 5.40
585 606 7.610692 GGAAATTAAGTAAGCTATATGGACCCC 59.389 40.741 0.00 0.00 0.00 4.95
586 607 8.383947 AGGAAATTAAGTAAGCTATATGGACCC 58.616 37.037 0.00 0.00 0.00 4.46
607 628 6.349944 CGTAAAGAACTGGAGTAGCTAGGAAA 60.350 42.308 0.00 0.00 0.00 3.13
743 769 3.559171 CGGTATTTATGCTGCTATGGGGT 60.559 47.826 0.00 0.00 0.00 4.95
748 774 2.711542 GGCCGGTATTTATGCTGCTAT 58.288 47.619 1.90 0.00 0.00 2.97
913 940 0.388294 GGACGGTCCCTATGTACTGC 59.612 60.000 16.55 0.00 0.00 4.40
1110 1156 2.242043 CCTTTGGACTCCAGCACAAAT 58.758 47.619 0.00 0.00 33.81 2.32
1113 1159 1.071699 GTACCTTTGGACTCCAGCACA 59.928 52.381 0.00 0.00 33.81 4.57
1189 1235 7.425595 GGTTAAAAACTTAGAATCGAATCAGCG 59.574 37.037 2.82 0.00 0.00 5.18
1202 1248 3.460362 GGCGACGGGTTAAAAACTTAG 57.540 47.619 0.00 0.00 0.00 2.18
1223 1269 4.467084 TCCCTGCGATGAACGGCC 62.467 66.667 0.00 0.00 42.83 6.13
1224 1270 3.195698 GTCCCTGCGATGAACGGC 61.196 66.667 0.00 0.00 42.83 5.68
1225 1271 2.885644 CGTCCCTGCGATGAACGG 60.886 66.667 0.00 0.00 42.83 4.44
1228 1274 2.264480 CCACGTCCCTGCGATGAA 59.736 61.111 0.00 0.00 35.59 2.57
1257 1303 2.737376 GCCGTCGTCAGGTGGAAC 60.737 66.667 0.00 0.00 0.00 3.62
1428 1474 2.436646 CGGAAGCGGATGTGCCTT 60.437 61.111 0.00 0.00 34.65 4.35
1590 1637 2.657757 CGTACTGCCGTGCACACAG 61.658 63.158 26.90 26.90 33.79 3.66
1628 1675 1.599071 CACGACAGCAAAAGCAAGAGA 59.401 47.619 0.00 0.00 0.00 3.10
1629 1676 1.923316 GCACGACAGCAAAAGCAAGAG 60.923 52.381 0.00 0.00 0.00 2.85
1630 1677 0.029300 GCACGACAGCAAAAGCAAGA 59.971 50.000 0.00 0.00 0.00 3.02
1631 1678 1.264141 CGCACGACAGCAAAAGCAAG 61.264 55.000 0.00 0.00 0.00 4.01
1653 1709 2.818432 GCATCCAGATTAATGGGAGCAG 59.182 50.000 10.35 5.46 41.01 4.24
1655 1711 1.808945 CGCATCCAGATTAATGGGAGC 59.191 52.381 10.35 11.52 41.01 4.70
1678 1734 2.697751 TCCCAACACAAATTCACCAAGG 59.302 45.455 0.00 0.00 0.00 3.61
1694 1750 1.924731 ATCACACGTCTCTCTCCCAA 58.075 50.000 0.00 0.00 0.00 4.12
1741 1801 1.705337 CGGAGCCTGCATACCAAACG 61.705 60.000 0.00 0.00 0.00 3.60
1798 1858 1.890876 TGCTAACGCCTGTGTTGATT 58.109 45.000 6.35 0.00 33.32 2.57
1822 1882 3.207669 GCCGCCAGCAAGATGGAG 61.208 66.667 8.81 4.67 43.57 3.86
2042 2107 4.202090 GCAGGGATGAAATGAATGACCTTC 60.202 45.833 0.00 0.00 0.00 3.46
2060 2125 1.670811 GTATGACAAATCCACGCAGGG 59.329 52.381 0.00 0.00 38.24 4.45
2062 2127 2.223112 GCAGTATGACAAATCCACGCAG 60.223 50.000 0.00 0.00 39.69 5.18
2175 2241 9.778741 GTATTCCTCCTTTCCAAAAAGAAAAAT 57.221 29.630 0.00 0.00 43.90 1.82
2181 2247 4.466370 GGGGTATTCCTCCTTTCCAAAAAG 59.534 45.833 0.00 0.00 37.67 2.27
2207 2273 4.636206 AGAAAGCAATACTCAAATCCGGAC 59.364 41.667 6.12 0.00 0.00 4.79
2307 2407 5.269505 AGGAGCAGCTTACTAATGTACTG 57.730 43.478 0.00 0.00 0.00 2.74
2318 2422 1.079127 GGCGTCAAGGAGCAGCTTA 60.079 57.895 0.00 0.00 34.54 3.09
2354 2458 8.330302 GCCAATCAAACATTAACTGCATATTTC 58.670 33.333 0.00 0.00 0.00 2.17
2364 2468 5.220265 CGAGCAATGCCAATCAAACATTAAC 60.220 40.000 0.00 0.00 32.89 2.01
2506 2705 4.671068 GCTTCAAGAAAACTGCTAAACGAC 59.329 41.667 0.00 0.00 0.00 4.34
2568 2768 6.494893 TTCGGCCATAATATTAACATCAGC 57.505 37.500 2.24 0.00 0.00 4.26
2581 2781 2.156098 GAACACTGGTTTCGGCCATAA 58.844 47.619 2.24 0.00 37.36 1.90
2633 2834 4.081752 ACAACAAGCACTTGGAAATGACAA 60.082 37.500 14.51 0.00 44.45 3.18
2858 3066 5.767816 ACAACAAATTGGTAGTCTTGTCC 57.232 39.130 0.00 0.00 40.42 4.02
2971 3179 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
2972 3180 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
2973 3181 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
2974 3182 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
2975 3183 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
2976 3184 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
2977 3185 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
2978 3186 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
2981 3189 6.980051 AAGAAACGTCTTACATTATGGGAC 57.020 37.500 0.00 1.75 42.53 4.46
2982 3190 8.095792 TGTAAAGAAACGTCTTACATTATGGGA 58.904 33.333 0.00 0.00 43.59 4.37
2983 3191 8.173130 GTGTAAAGAAACGTCTTACATTATGGG 58.827 37.037 12.64 0.00 43.59 4.00
2984 3192 8.932791 AGTGTAAAGAAACGTCTTACATTATGG 58.067 33.333 12.64 0.00 43.59 2.74
2989 3197 9.485206 ACATTAGTGTAAAGAAACGTCTTACAT 57.515 29.630 12.64 7.35 43.59 2.29
2990 3198 8.876275 ACATTAGTGTAAAGAAACGTCTTACA 57.124 30.769 0.00 0.00 43.59 2.41
3020 3228 8.889717 CGTCCCATAATATAAGACACTTTTTGT 58.110 33.333 0.00 0.00 43.10 2.83
3021 3229 8.342634 CCGTCCCATAATATAAGACACTTTTTG 58.657 37.037 0.00 0.00 0.00 2.44
3022 3230 8.269317 TCCGTCCCATAATATAAGACACTTTTT 58.731 33.333 0.00 0.00 0.00 1.94
3023 3231 7.798071 TCCGTCCCATAATATAAGACACTTTT 58.202 34.615 0.00 0.00 0.00 2.27
3024 3232 7.369551 TCCGTCCCATAATATAAGACACTTT 57.630 36.000 0.00 0.00 0.00 2.66
3025 3233 6.014499 CCTCCGTCCCATAATATAAGACACTT 60.014 42.308 0.00 0.00 0.00 3.16
3026 3234 5.480772 CCTCCGTCCCATAATATAAGACACT 59.519 44.000 0.00 0.00 0.00 3.55
3027 3235 5.337330 CCCTCCGTCCCATAATATAAGACAC 60.337 48.000 0.00 0.00 0.00 3.67
3028 3236 4.775780 CCCTCCGTCCCATAATATAAGACA 59.224 45.833 0.00 0.00 0.00 3.41
3029 3237 5.021458 TCCCTCCGTCCCATAATATAAGAC 58.979 45.833 0.00 0.00 0.00 3.01
3030 3238 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3031 3239 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3032 3240 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3033 3241 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3034 3242 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3035 3243 3.140707 TGTACTCCCTCCGTCCCATAATA 59.859 47.826 0.00 0.00 0.00 0.98
3036 3244 2.090943 TGTACTCCCTCCGTCCCATAAT 60.091 50.000 0.00 0.00 0.00 1.28
3037 3245 1.288633 TGTACTCCCTCCGTCCCATAA 59.711 52.381 0.00 0.00 0.00 1.90
3038 3246 0.928505 TGTACTCCCTCCGTCCCATA 59.071 55.000 0.00 0.00 0.00 2.74
3039 3247 0.264955 ATGTACTCCCTCCGTCCCAT 59.735 55.000 0.00 0.00 0.00 4.00
3040 3248 0.042131 AATGTACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
3041 3249 1.201424 AAATGTACTCCCTCCGTCCC 58.799 55.000 0.00 0.00 0.00 4.46
3042 3250 3.345508 AAAAATGTACTCCCTCCGTCC 57.654 47.619 0.00 0.00 0.00 4.79
3119 3327 9.256477 GTCAATATCTATGACAACGGACATAAA 57.744 33.333 2.01 0.00 45.13 1.40
3185 3394 5.922544 GGCCACAATAATGATCAGTTTATGC 59.077 40.000 0.00 1.42 0.00 3.14
3436 3647 5.359194 AGAAACGTATCAGGAATGGACAT 57.641 39.130 0.00 0.00 0.00 3.06
3500 3711 4.572795 GCCTAAGTGTTTCAGGAATCTAGC 59.427 45.833 0.00 0.00 0.00 3.42
3625 3836 5.221106 CCAATGGCGTACATCAAAGAATCAT 60.221 40.000 0.00 0.00 39.40 2.45
3798 4009 5.163499 ACAAACTAATCTGGGTTTTGCGAAA 60.163 36.000 0.00 0.00 34.01 3.46
3819 4030 6.472016 TGAGGCACTATTGATCACTTTACAA 58.528 36.000 0.00 0.00 41.55 2.41
3857 4068 6.744537 GCAAATCACTGAACACACTGATTATC 59.255 38.462 0.00 0.00 33.21 1.75
3858 4069 6.615088 GCAAATCACTGAACACACTGATTAT 58.385 36.000 0.00 0.00 33.21 1.28
3988 4200 4.762289 AATTGGTGACTAGTGGAGGATC 57.238 45.455 0.00 0.00 0.00 3.36
3997 4216 3.068307 CGGAGGGAGTAATTGGTGACTAG 59.932 52.174 0.00 0.00 0.00 2.57
4009 4228 3.173953 TGTTTAGGAACGGAGGGAGTA 57.826 47.619 0.00 0.00 38.65 2.59
4010 4229 2.019807 TGTTTAGGAACGGAGGGAGT 57.980 50.000 0.00 0.00 38.65 3.85
4011 4230 3.629142 AATGTTTAGGAACGGAGGGAG 57.371 47.619 0.00 0.00 38.65 4.30
4012 4231 4.081309 CACTAATGTTTAGGAACGGAGGGA 60.081 45.833 0.00 0.00 38.65 4.20
4013 4232 4.189231 CACTAATGTTTAGGAACGGAGGG 58.811 47.826 0.00 0.00 38.65 4.30
4014 4233 4.189231 CCACTAATGTTTAGGAACGGAGG 58.811 47.826 0.00 0.00 38.65 4.30
4015 4234 4.828829 ACCACTAATGTTTAGGAACGGAG 58.171 43.478 0.00 0.00 38.65 4.63
4016 4235 4.895668 ACCACTAATGTTTAGGAACGGA 57.104 40.909 0.00 0.00 38.65 4.69
4017 4236 4.758165 ACAACCACTAATGTTTAGGAACGG 59.242 41.667 0.00 0.00 38.65 4.44
4018 4237 5.934935 ACAACCACTAATGTTTAGGAACG 57.065 39.130 0.00 0.00 38.65 3.95
4023 4242 9.715121 TCTACCTTAACAACCACTAATGTTTAG 57.285 33.333 0.00 0.00 40.14 1.85
4025 4244 8.843262 GTTCTACCTTAACAACCACTAATGTTT 58.157 33.333 0.00 0.00 40.14 2.83
4026 4245 7.172019 CGTTCTACCTTAACAACCACTAATGTT 59.828 37.037 0.00 0.00 42.16 2.71
4027 4246 6.647895 CGTTCTACCTTAACAACCACTAATGT 59.352 38.462 0.00 0.00 0.00 2.71
4028 4247 6.091713 CCGTTCTACCTTAACAACCACTAATG 59.908 42.308 0.00 0.00 0.00 1.90
4029 4248 6.014327 TCCGTTCTACCTTAACAACCACTAAT 60.014 38.462 0.00 0.00 0.00 1.73
4030 4249 5.304101 TCCGTTCTACCTTAACAACCACTAA 59.696 40.000 0.00 0.00 0.00 2.24
4031 4250 4.832266 TCCGTTCTACCTTAACAACCACTA 59.168 41.667 0.00 0.00 0.00 2.74
4032 4251 3.642848 TCCGTTCTACCTTAACAACCACT 59.357 43.478 0.00 0.00 0.00 4.00
4033 4252 3.992427 CTCCGTTCTACCTTAACAACCAC 59.008 47.826 0.00 0.00 0.00 4.16
4034 4253 3.007182 CCTCCGTTCTACCTTAACAACCA 59.993 47.826 0.00 0.00 0.00 3.67
4035 4254 3.593096 CCTCCGTTCTACCTTAACAACC 58.407 50.000 0.00 0.00 0.00 3.77
4036 4255 3.259123 TCCCTCCGTTCTACCTTAACAAC 59.741 47.826 0.00 0.00 0.00 3.32
4037 4256 3.509442 TCCCTCCGTTCTACCTTAACAA 58.491 45.455 0.00 0.00 0.00 2.83
4038 4257 3.094572 CTCCCTCCGTTCTACCTTAACA 58.905 50.000 0.00 0.00 0.00 2.41
4039 4258 3.095332 ACTCCCTCCGTTCTACCTTAAC 58.905 50.000 0.00 0.00 0.00 2.01
4040 4259 3.463048 ACTCCCTCCGTTCTACCTTAA 57.537 47.619 0.00 0.00 0.00 1.85
4041 4260 3.266772 TGTACTCCCTCCGTTCTACCTTA 59.733 47.826 0.00 0.00 0.00 2.69
4042 4261 2.042162 TGTACTCCCTCCGTTCTACCTT 59.958 50.000 0.00 0.00 0.00 3.50
4043 4262 1.637553 TGTACTCCCTCCGTTCTACCT 59.362 52.381 0.00 0.00 0.00 3.08
4044 4263 2.134789 TGTACTCCCTCCGTTCTACC 57.865 55.000 0.00 0.00 0.00 3.18
4045 4264 4.732672 ATTTGTACTCCCTCCGTTCTAC 57.267 45.455 0.00 0.00 0.00 2.59
4046 4265 7.093201 ACAATAATTTGTACTCCCTCCGTTCTA 60.093 37.037 0.00 0.00 44.22 2.10
4047 4266 5.952347 ATAATTTGTACTCCCTCCGTTCT 57.048 39.130 0.00 0.00 0.00 3.01
4048 4267 5.878669 ACAATAATTTGTACTCCCTCCGTTC 59.121 40.000 0.00 0.00 44.22 3.95
4049 4268 5.812286 ACAATAATTTGTACTCCCTCCGTT 58.188 37.500 0.00 0.00 44.22 4.44
4050 4269 5.431179 ACAATAATTTGTACTCCCTCCGT 57.569 39.130 0.00 0.00 44.22 4.69
4257 4560 3.392730 TCACATCAATATCCTGACCCCA 58.607 45.455 0.00 0.00 0.00 4.96
4264 4567 9.736414 CTTTGGAATAGATCACATCAATATCCT 57.264 33.333 0.00 0.00 0.00 3.24
4265 4568 9.512588 ACTTTGGAATAGATCACATCAATATCC 57.487 33.333 0.00 0.00 0.00 2.59
4281 4584 8.852135 AGACAAATTCGGTTTTACTTTGGAATA 58.148 29.630 0.00 0.00 32.47 1.75
4309 4612 4.703379 ATTGTGGGCCAAAAGAATTCAA 57.297 36.364 15.65 9.69 36.44 2.69
4312 4615 4.102996 ACTCAATTGTGGGCCAAAAGAATT 59.897 37.500 15.65 10.99 36.44 2.17
4399 4702 5.529430 TCTTCTTTTGTTATGGAACTTCGCA 59.471 36.000 0.00 0.00 36.45 5.10
4556 4859 6.191315 ACTTGGATGAGCTTAGAGAGTAGAA 58.809 40.000 0.00 0.00 0.00 2.10
4557 4860 5.761205 ACTTGGATGAGCTTAGAGAGTAGA 58.239 41.667 0.00 0.00 0.00 2.59
4681 5077 1.028330 ATGCTTGGCGTCATCCACAG 61.028 55.000 0.00 0.00 35.50 3.66
4754 5150 8.517878 CCATTCAAAGTTGATTCTGTCTGTAAT 58.482 33.333 0.00 0.00 37.00 1.89
4771 5167 3.132824 GGCCTGTAATTCCCCATTCAAAG 59.867 47.826 0.00 0.00 0.00 2.77
5040 5436 2.630580 GCTGGAGGAGGACGAATAGAAT 59.369 50.000 0.00 0.00 0.00 2.40
5045 5441 1.045911 GGAGCTGGAGGAGGACGAAT 61.046 60.000 0.00 0.00 0.00 3.34
5078 5474 0.840288 ATGCCACCTGGGAGTACACA 60.840 55.000 0.00 0.00 39.50 3.72
5099 5495 4.141981 GCTGAGTTCTTCTCCATGATCTCA 60.142 45.833 0.00 0.00 42.12 3.27
5291 5687 2.602660 CGCGATGTTGTACATGATGACA 59.397 45.455 0.00 0.00 39.27 3.58
5365 5761 2.805353 CGACGCCTGTGAAGACGG 60.805 66.667 0.00 0.00 0.00 4.79
5429 5825 2.229062 GCTGAAGAGTTTAAACTGGCCC 59.771 50.000 25.17 10.75 39.88 5.80
5490 5886 4.565028 GGGCTAAGCACCTAACAAACTAGT 60.565 45.833 0.00 0.00 0.00 2.57
5551 5951 2.001076 AAAGGGGAGGAACAAAGCTG 57.999 50.000 0.00 0.00 0.00 4.24
5612 6054 3.181478 GGTACTATGCTGGTGTACACTCC 60.181 52.174 24.55 10.64 38.50 3.85
5635 6077 5.163893 CGTGGTCGTATTCTGCAATTAACTT 60.164 40.000 0.00 0.00 0.00 2.66
5636 6078 4.328983 CGTGGTCGTATTCTGCAATTAACT 59.671 41.667 0.00 0.00 0.00 2.24
5637 6079 4.574759 CGTGGTCGTATTCTGCAATTAAC 58.425 43.478 0.00 0.00 0.00 2.01
5638 6080 4.850859 CGTGGTCGTATTCTGCAATTAA 57.149 40.909 0.00 0.00 0.00 1.40
5652 6094 4.461992 AAACATAACTCAAACGTGGTCG 57.538 40.909 0.00 0.00 43.34 4.79
5653 6095 6.201425 TCTGTAAACATAACTCAAACGTGGTC 59.799 38.462 0.00 0.00 0.00 4.02
5654 6096 6.050432 TCTGTAAACATAACTCAAACGTGGT 58.950 36.000 0.00 0.00 0.00 4.16
5655 6097 6.533819 TCTGTAAACATAACTCAAACGTGG 57.466 37.500 0.00 0.00 0.00 4.94
5656 6098 8.829514 TTTTCTGTAAACATAACTCAAACGTG 57.170 30.769 0.00 0.00 0.00 4.49
5663 6105 9.537848 CCACGTATTTTTCTGTAAACATAACTC 57.462 33.333 0.00 0.00 0.00 3.01
5664 6106 9.059260 ACCACGTATTTTTCTGTAAACATAACT 57.941 29.630 0.00 0.00 0.00 2.24
5665 6107 9.321590 GACCACGTATTTTTCTGTAAACATAAC 57.678 33.333 0.00 0.00 0.00 1.89
5666 6108 8.505625 GGACCACGTATTTTTCTGTAAACATAA 58.494 33.333 0.00 0.00 0.00 1.90
5667 6109 7.879160 AGGACCACGTATTTTTCTGTAAACATA 59.121 33.333 0.00 0.00 0.00 2.29
5668 6110 6.713450 AGGACCACGTATTTTTCTGTAAACAT 59.287 34.615 0.00 0.00 0.00 2.71
5669 6111 6.056884 AGGACCACGTATTTTTCTGTAAACA 58.943 36.000 0.00 0.00 0.00 2.83
5670 6112 6.549912 AGGACCACGTATTTTTCTGTAAAC 57.450 37.500 0.00 0.00 0.00 2.01
5671 6113 8.674263 TTAAGGACCACGTATTTTTCTGTAAA 57.326 30.769 0.00 0.00 0.00 2.01
5672 6114 8.851541 ATTAAGGACCACGTATTTTTCTGTAA 57.148 30.769 0.00 0.00 0.00 2.41
5673 6115 8.851541 AATTAAGGACCACGTATTTTTCTGTA 57.148 30.769 0.00 0.00 0.00 2.74
5674 6116 7.754851 AATTAAGGACCACGTATTTTTCTGT 57.245 32.000 0.00 0.00 0.00 3.41
5680 6122 9.233649 TGACAAATAATTAAGGACCACGTATTT 57.766 29.630 0.00 0.00 0.00 1.40
5681 6123 8.795842 TGACAAATAATTAAGGACCACGTATT 57.204 30.769 0.00 0.00 0.00 1.89
5682 6124 8.795842 TTGACAAATAATTAAGGACCACGTAT 57.204 30.769 0.00 0.00 0.00 3.06
5683 6125 7.879160 ACTTGACAAATAATTAAGGACCACGTA 59.121 33.333 0.00 0.00 0.00 3.57
5684 6126 6.713450 ACTTGACAAATAATTAAGGACCACGT 59.287 34.615 0.00 0.00 0.00 4.49
5685 6127 7.094975 TGACTTGACAAATAATTAAGGACCACG 60.095 37.037 0.00 0.00 0.00 4.94
5686 6128 8.106247 TGACTTGACAAATAATTAAGGACCAC 57.894 34.615 0.00 0.00 0.00 4.16
5687 6129 7.094377 GCTGACTTGACAAATAATTAAGGACCA 60.094 37.037 0.00 0.00 0.00 4.02
5688 6130 7.121315 AGCTGACTTGACAAATAATTAAGGACC 59.879 37.037 0.00 0.00 0.00 4.46
5689 6131 8.045176 AGCTGACTTGACAAATAATTAAGGAC 57.955 34.615 0.00 0.00 0.00 3.85
5690 6132 7.336931 GGAGCTGACTTGACAAATAATTAAGGA 59.663 37.037 0.00 0.00 0.00 3.36
5691 6133 7.337942 AGGAGCTGACTTGACAAATAATTAAGG 59.662 37.037 0.00 0.00 0.00 2.69
5692 6134 8.273780 AGGAGCTGACTTGACAAATAATTAAG 57.726 34.615 0.00 0.00 0.00 1.85
5693 6135 8.635765 AAGGAGCTGACTTGACAAATAATTAA 57.364 30.769 0.00 0.00 0.00 1.40
5694 6136 9.733556 TTAAGGAGCTGACTTGACAAATAATTA 57.266 29.630 9.85 0.00 0.00 1.40
5695 6137 8.635765 TTAAGGAGCTGACTTGACAAATAATT 57.364 30.769 9.85 0.00 0.00 1.40
5696 6138 8.635765 TTTAAGGAGCTGACTTGACAAATAAT 57.364 30.769 9.85 0.00 0.00 1.28
5697 6139 8.458573 TTTTAAGGAGCTGACTTGACAAATAA 57.541 30.769 9.85 0.00 0.00 1.40
5698 6140 8.635765 ATTTTAAGGAGCTGACTTGACAAATA 57.364 30.769 9.85 0.00 0.00 1.40
5699 6141 6.959639 TTTTAAGGAGCTGACTTGACAAAT 57.040 33.333 9.85 0.00 0.00 2.32
5700 6142 6.016276 GGATTTTAAGGAGCTGACTTGACAAA 60.016 38.462 9.85 7.08 0.00 2.83
5701 6143 5.473504 GGATTTTAAGGAGCTGACTTGACAA 59.526 40.000 9.85 0.00 0.00 3.18
5702 6144 5.003804 GGATTTTAAGGAGCTGACTTGACA 58.996 41.667 9.85 0.00 0.00 3.58
5703 6145 4.093556 CGGATTTTAAGGAGCTGACTTGAC 59.906 45.833 9.85 0.00 0.00 3.18
5704 6146 4.253685 CGGATTTTAAGGAGCTGACTTGA 58.746 43.478 9.85 0.21 0.00 3.02
5705 6147 3.375299 CCGGATTTTAAGGAGCTGACTTG 59.625 47.826 0.00 0.00 0.00 3.16
5706 6148 3.610911 CCGGATTTTAAGGAGCTGACTT 58.389 45.455 0.00 0.00 0.00 3.01
5707 6149 2.681097 GCCGGATTTTAAGGAGCTGACT 60.681 50.000 5.05 0.00 0.00 3.41
5708 6150 1.671328 GCCGGATTTTAAGGAGCTGAC 59.329 52.381 5.05 0.00 0.00 3.51
5709 6151 1.559682 AGCCGGATTTTAAGGAGCTGA 59.440 47.619 5.05 0.00 0.00 4.26
5710 6152 1.943340 GAGCCGGATTTTAAGGAGCTG 59.057 52.381 5.05 0.00 0.00 4.24
5711 6153 1.840635 AGAGCCGGATTTTAAGGAGCT 59.159 47.619 5.05 0.00 0.00 4.09
5712 6154 2.333688 AGAGCCGGATTTTAAGGAGC 57.666 50.000 5.05 0.00 0.00 4.70
5713 6155 4.674281 AGTAGAGCCGGATTTTAAGGAG 57.326 45.455 5.05 0.00 0.00 3.69
5714 6156 4.224370 ACAAGTAGAGCCGGATTTTAAGGA 59.776 41.667 5.05 0.00 0.00 3.36
5715 6157 4.514401 ACAAGTAGAGCCGGATTTTAAGG 58.486 43.478 5.05 0.00 0.00 2.69
5716 6158 5.175859 TGACAAGTAGAGCCGGATTTTAAG 58.824 41.667 5.05 0.00 0.00 1.85
5717 6159 5.046878 TCTGACAAGTAGAGCCGGATTTTAA 60.047 40.000 5.05 0.00 0.00 1.52
5718 6160 4.464951 TCTGACAAGTAGAGCCGGATTTTA 59.535 41.667 5.05 0.00 0.00 1.52
5719 6161 3.260884 TCTGACAAGTAGAGCCGGATTTT 59.739 43.478 5.05 0.00 0.00 1.82
5720 6162 2.832129 TCTGACAAGTAGAGCCGGATTT 59.168 45.455 5.05 0.00 0.00 2.17
5721 6163 2.457598 TCTGACAAGTAGAGCCGGATT 58.542 47.619 5.05 0.00 0.00 3.01
5722 6164 2.145397 TCTGACAAGTAGAGCCGGAT 57.855 50.000 5.05 0.00 0.00 4.18
5723 6165 1.919240 TTCTGACAAGTAGAGCCGGA 58.081 50.000 5.05 0.00 0.00 5.14
5724 6166 2.028930 ACTTTCTGACAAGTAGAGCCGG 60.029 50.000 0.00 0.00 35.10 6.13
5725 6167 3.305398 ACTTTCTGACAAGTAGAGCCG 57.695 47.619 4.24 0.00 35.10 5.52
5726 6168 5.057149 TCAAACTTTCTGACAAGTAGAGCC 58.943 41.667 5.92 0.00 35.87 4.70
5727 6169 6.793492 ATCAAACTTTCTGACAAGTAGAGC 57.207 37.500 5.92 0.00 35.87 4.09
5745 6187 9.684448 TTGCTACGTTTGATCATTTTTATCAAA 57.316 25.926 0.00 7.05 46.08 2.69
5746 6188 9.684448 TTTGCTACGTTTGATCATTTTTATCAA 57.316 25.926 0.00 0.00 40.63 2.57
5747 6189 9.853555 ATTTGCTACGTTTGATCATTTTTATCA 57.146 25.926 0.00 0.00 0.00 2.15
5749 6191 9.853555 TGATTTGCTACGTTTGATCATTTTTAT 57.146 25.926 0.00 0.00 0.00 1.40
5750 6192 9.123709 GTGATTTGCTACGTTTGATCATTTTTA 57.876 29.630 0.00 0.00 0.00 1.52
5751 6193 7.116233 GGTGATTTGCTACGTTTGATCATTTTT 59.884 33.333 0.00 0.00 0.00 1.94
5752 6194 6.586082 GGTGATTTGCTACGTTTGATCATTTT 59.414 34.615 0.00 0.00 0.00 1.82
5753 6195 6.092748 GGTGATTTGCTACGTTTGATCATTT 58.907 36.000 0.00 0.00 0.00 2.32
5754 6196 5.393027 GGGTGATTTGCTACGTTTGATCATT 60.393 40.000 0.00 0.00 0.00 2.57
5755 6197 4.096382 GGGTGATTTGCTACGTTTGATCAT 59.904 41.667 0.00 0.00 0.00 2.45
5756 6198 3.438781 GGGTGATTTGCTACGTTTGATCA 59.561 43.478 0.00 0.00 0.00 2.92
5757 6199 3.485216 CGGGTGATTTGCTACGTTTGATC 60.485 47.826 0.00 0.00 0.00 2.92
5758 6200 2.418628 CGGGTGATTTGCTACGTTTGAT 59.581 45.455 0.00 0.00 0.00 2.57
5759 6201 1.801771 CGGGTGATTTGCTACGTTTGA 59.198 47.619 0.00 0.00 0.00 2.69
5760 6202 1.801771 TCGGGTGATTTGCTACGTTTG 59.198 47.619 0.00 0.00 0.00 2.93
5761 6203 2.172851 TCGGGTGATTTGCTACGTTT 57.827 45.000 0.00 0.00 0.00 3.60
5762 6204 2.277084 GATCGGGTGATTTGCTACGTT 58.723 47.619 0.00 0.00 34.09 3.99
5763 6205 1.206132 TGATCGGGTGATTTGCTACGT 59.794 47.619 0.00 0.00 34.09 3.57
5764 6206 1.934589 TGATCGGGTGATTTGCTACG 58.065 50.000 0.00 0.00 34.09 3.51
5765 6207 3.548818 GCATTGATCGGGTGATTTGCTAC 60.549 47.826 0.00 0.00 34.80 3.58
5766 6208 2.618241 GCATTGATCGGGTGATTTGCTA 59.382 45.455 0.00 0.00 34.80 3.49
5767 6209 1.406539 GCATTGATCGGGTGATTTGCT 59.593 47.619 0.00 0.00 34.80 3.91
5768 6210 1.406539 AGCATTGATCGGGTGATTTGC 59.593 47.619 0.00 0.00 36.40 3.68
5769 6211 3.788333 AAGCATTGATCGGGTGATTTG 57.212 42.857 0.00 0.00 34.09 2.32
5770 6212 4.019174 AGAAAGCATTGATCGGGTGATTT 58.981 39.130 7.47 7.47 34.55 2.17
5771 6213 3.379372 CAGAAAGCATTGATCGGGTGATT 59.621 43.478 0.00 0.00 34.09 2.57
5772 6214 2.947652 CAGAAAGCATTGATCGGGTGAT 59.052 45.455 0.00 0.00 37.60 3.06
5773 6215 2.358957 CAGAAAGCATTGATCGGGTGA 58.641 47.619 0.00 0.00 0.00 4.02
5774 6216 1.202222 GCAGAAAGCATTGATCGGGTG 60.202 52.381 0.00 0.00 44.79 4.61
5775 6217 1.098050 GCAGAAAGCATTGATCGGGT 58.902 50.000 0.00 0.00 44.79 5.28
5776 6218 3.932459 GCAGAAAGCATTGATCGGG 57.068 52.632 0.00 0.00 44.79 5.14
5786 6228 8.532341 GTTTCTACTAAACTTTTTGCAGAAAGC 58.468 33.333 25.16 5.08 36.60 3.51
5787 6229 9.567848 TGTTTCTACTAAACTTTTTGCAGAAAG 57.432 29.630 24.00 24.00 36.60 2.62
5788 6230 9.349145 GTGTTTCTACTAAACTTTTTGCAGAAA 57.651 29.630 2.07 2.07 34.92 2.52
5789 6231 7.694784 CGTGTTTCTACTAAACTTTTTGCAGAA 59.305 33.333 0.00 0.00 0.00 3.02
5790 6232 7.184106 CGTGTTTCTACTAAACTTTTTGCAGA 58.816 34.615 0.00 0.00 0.00 4.26
5791 6233 6.413818 CCGTGTTTCTACTAAACTTTTTGCAG 59.586 38.462 0.00 0.00 0.00 4.41
5792 6234 6.127952 ACCGTGTTTCTACTAAACTTTTTGCA 60.128 34.615 0.00 0.00 0.00 4.08
5793 6235 6.195798 CACCGTGTTTCTACTAAACTTTTTGC 59.804 38.462 0.00 0.00 0.00 3.68
5794 6236 6.689669 CCACCGTGTTTCTACTAAACTTTTTG 59.310 38.462 0.00 0.00 0.00 2.44
5795 6237 6.678655 GCCACCGTGTTTCTACTAAACTTTTT 60.679 38.462 0.00 0.00 0.00 1.94
5796 6238 5.220912 GCCACCGTGTTTCTACTAAACTTTT 60.221 40.000 0.00 0.00 0.00 2.27
5797 6239 4.274214 GCCACCGTGTTTCTACTAAACTTT 59.726 41.667 0.00 0.00 0.00 2.66
5798 6240 3.811497 GCCACCGTGTTTCTACTAAACTT 59.189 43.478 0.00 0.00 0.00 2.66
5799 6241 3.070590 AGCCACCGTGTTTCTACTAAACT 59.929 43.478 0.00 0.00 0.00 2.66
5800 6242 3.396560 AGCCACCGTGTTTCTACTAAAC 58.603 45.455 0.00 0.00 0.00 2.01
5801 6243 3.756933 AGCCACCGTGTTTCTACTAAA 57.243 42.857 0.00 0.00 0.00 1.85
5802 6244 3.756933 AAGCCACCGTGTTTCTACTAA 57.243 42.857 0.00 0.00 0.00 2.24
5803 6245 3.756933 AAAGCCACCGTGTTTCTACTA 57.243 42.857 0.00 0.00 0.00 1.82
5804 6246 2.616842 CAAAAGCCACCGTGTTTCTACT 59.383 45.455 0.00 0.00 0.00 2.57
5805 6247 2.857104 GCAAAAGCCACCGTGTTTCTAC 60.857 50.000 0.00 0.00 0.00 2.59
5806 6248 1.335496 GCAAAAGCCACCGTGTTTCTA 59.665 47.619 0.00 0.00 0.00 2.10
5807 6249 0.102300 GCAAAAGCCACCGTGTTTCT 59.898 50.000 0.00 0.00 0.00 2.52
5808 6250 0.179124 TGCAAAAGCCACCGTGTTTC 60.179 50.000 0.00 0.00 0.00 2.78
5809 6251 0.247736 TTGCAAAAGCCACCGTGTTT 59.752 45.000 0.00 0.00 0.00 2.83
5810 6252 0.247736 TTTGCAAAAGCCACCGTGTT 59.752 45.000 10.02 0.00 0.00 3.32
5811 6253 0.463620 ATTTGCAAAAGCCACCGTGT 59.536 45.000 17.19 0.00 0.00 4.49
5812 6254 2.430546 TATTTGCAAAAGCCACCGTG 57.569 45.000 17.19 0.00 0.00 4.94
5813 6255 3.676291 ATTATTTGCAAAAGCCACCGT 57.324 38.095 17.19 0.00 0.00 4.83
5814 6256 5.063312 CCTTAATTATTTGCAAAAGCCACCG 59.937 40.000 17.19 3.42 0.00 4.94
5815 6257 6.092122 GTCCTTAATTATTTGCAAAAGCCACC 59.908 38.462 17.19 0.00 0.00 4.61
5816 6258 6.092122 GGTCCTTAATTATTTGCAAAAGCCAC 59.908 38.462 17.19 6.95 0.00 5.01
5817 6259 6.169800 GGTCCTTAATTATTTGCAAAAGCCA 58.830 36.000 17.19 0.63 0.00 4.75
5818 6260 6.092122 GTGGTCCTTAATTATTTGCAAAAGCC 59.908 38.462 17.19 6.07 0.00 4.35
5819 6261 6.183360 CGTGGTCCTTAATTATTTGCAAAAGC 60.183 38.462 17.19 6.47 0.00 3.51
5820 6262 6.866248 ACGTGGTCCTTAATTATTTGCAAAAG 59.134 34.615 17.19 7.63 0.00 2.27
5821 6263 6.750148 ACGTGGTCCTTAATTATTTGCAAAA 58.250 32.000 17.19 0.11 0.00 2.44
5822 6264 6.334102 ACGTGGTCCTTAATTATTTGCAAA 57.666 33.333 15.44 15.44 0.00 3.68
5823 6265 5.968528 ACGTGGTCCTTAATTATTTGCAA 57.031 34.783 0.00 0.00 0.00 4.08
5824 6266 7.633193 AATACGTGGTCCTTAATTATTTGCA 57.367 32.000 0.00 0.00 0.00 4.08
5825 6267 8.920509 AAAATACGTGGTCCTTAATTATTTGC 57.079 30.769 0.00 0.00 0.00 3.68
5848 6290 6.622427 TTTGGGGTTAGGTTTTCAGAAAAA 57.378 33.333 10.00 0.00 31.13 1.94
5849 6291 6.816616 ATTTGGGGTTAGGTTTTCAGAAAA 57.183 33.333 4.06 4.06 0.00 2.29
5850 6292 6.461788 CGAATTTGGGGTTAGGTTTTCAGAAA 60.462 38.462 0.00 0.00 0.00 2.52
5851 6293 5.010213 CGAATTTGGGGTTAGGTTTTCAGAA 59.990 40.000 0.00 0.00 0.00 3.02
5852 6294 4.521256 CGAATTTGGGGTTAGGTTTTCAGA 59.479 41.667 0.00 0.00 0.00 3.27
5853 6295 4.321675 CCGAATTTGGGGTTAGGTTTTCAG 60.322 45.833 3.45 0.00 0.00 3.02
5854 6296 3.574826 CCGAATTTGGGGTTAGGTTTTCA 59.425 43.478 3.45 0.00 0.00 2.69
5855 6297 3.615592 GCCGAATTTGGGGTTAGGTTTTC 60.616 47.826 13.87 0.00 0.00 2.29
5856 6298 2.300723 GCCGAATTTGGGGTTAGGTTTT 59.699 45.455 13.87 0.00 0.00 2.43
5857 6299 1.897133 GCCGAATTTGGGGTTAGGTTT 59.103 47.619 13.87 0.00 0.00 3.27
5858 6300 1.552578 GCCGAATTTGGGGTTAGGTT 58.447 50.000 13.87 0.00 0.00 3.50
5859 6301 0.678684 CGCCGAATTTGGGGTTAGGT 60.679 55.000 18.64 0.00 37.20 3.08
5860 6302 1.381165 CCGCCGAATTTGGGGTTAGG 61.381 60.000 23.46 7.93 40.18 2.69
5861 6303 0.678684 ACCGCCGAATTTGGGGTTAG 60.679 55.000 23.46 13.17 45.80 2.34
5862 6304 1.379531 ACCGCCGAATTTGGGGTTA 59.620 52.632 23.46 0.00 45.80 2.85
5863 6305 2.116556 ACCGCCGAATTTGGGGTT 59.883 55.556 23.46 10.24 45.80 4.11
5865 6307 0.389296 GAAAACCGCCGAATTTGGGG 60.389 55.000 19.71 19.71 41.40 4.96
5866 6308 0.601057 AGAAAACCGCCGAATTTGGG 59.399 50.000 13.87 3.02 0.00 4.12
5867 6309 1.696988 CAGAAAACCGCCGAATTTGG 58.303 50.000 7.44 7.44 0.00 3.28
5868 6310 1.059942 GCAGAAAACCGCCGAATTTG 58.940 50.000 0.00 0.00 0.00 2.32
5869 6311 0.958822 AGCAGAAAACCGCCGAATTT 59.041 45.000 0.00 0.00 0.00 1.82
5870 6312 0.958822 AAGCAGAAAACCGCCGAATT 59.041 45.000 0.00 0.00 0.00 2.17
5871 6313 0.958822 AAAGCAGAAAACCGCCGAAT 59.041 45.000 0.00 0.00 0.00 3.34
5872 6314 0.741915 AAAAGCAGAAAACCGCCGAA 59.258 45.000 0.00 0.00 0.00 4.30
5873 6315 1.595466 TAAAAGCAGAAAACCGCCGA 58.405 45.000 0.00 0.00 0.00 5.54
5874 6316 2.048498 GTTAAAAGCAGAAAACCGCCG 58.952 47.619 0.00 0.00 0.00 6.46
5875 6317 3.305964 GAGTTAAAAGCAGAAAACCGCC 58.694 45.455 0.00 0.00 0.00 6.13
5876 6318 3.243267 TGGAGTTAAAAGCAGAAAACCGC 60.243 43.478 0.00 0.00 0.00 5.68
5877 6319 4.561735 TGGAGTTAAAAGCAGAAAACCG 57.438 40.909 0.00 0.00 0.00 4.44
5878 6320 7.215719 ACTATGGAGTTAAAAGCAGAAAACC 57.784 36.000 0.00 0.00 28.61 3.27
5879 6321 8.235226 GGTACTATGGAGTTAAAAGCAGAAAAC 58.765 37.037 0.00 0.00 37.10 2.43
5880 6322 7.392393 GGGTACTATGGAGTTAAAAGCAGAAAA 59.608 37.037 0.00 0.00 37.10 2.29
5881 6323 6.882678 GGGTACTATGGAGTTAAAAGCAGAAA 59.117 38.462 0.00 0.00 37.10 2.52
5882 6324 6.412214 GGGTACTATGGAGTTAAAAGCAGAA 58.588 40.000 0.00 0.00 37.10 3.02
5883 6325 5.104652 GGGGTACTATGGAGTTAAAAGCAGA 60.105 44.000 0.00 0.00 37.10 4.26
5884 6326 5.104485 AGGGGTACTATGGAGTTAAAAGCAG 60.104 44.000 0.00 0.00 37.10 4.24
5885 6327 4.786454 AGGGGTACTATGGAGTTAAAAGCA 59.214 41.667 0.00 0.00 37.10 3.91
5886 6328 5.369409 AGGGGTACTATGGAGTTAAAAGC 57.631 43.478 0.00 0.00 37.10 3.51
5887 6329 6.954232 TGAAGGGGTACTATGGAGTTAAAAG 58.046 40.000 0.00 0.00 37.10 2.27
5888 6330 6.956102 TGAAGGGGTACTATGGAGTTAAAA 57.044 37.500 0.00 0.00 37.10 1.52
5889 6331 7.519347 AATGAAGGGGTACTATGGAGTTAAA 57.481 36.000 0.00 0.00 37.10 1.52
5890 6332 7.624478 TGTAATGAAGGGGTACTATGGAGTTAA 59.376 37.037 0.00 0.00 37.10 2.01
5891 6333 7.134162 TGTAATGAAGGGGTACTATGGAGTTA 58.866 38.462 0.00 0.00 37.10 2.24
5892 6334 5.968167 TGTAATGAAGGGGTACTATGGAGTT 59.032 40.000 0.00 0.00 37.10 3.01
5893 6335 5.535029 TGTAATGAAGGGGTACTATGGAGT 58.465 41.667 0.00 0.00 39.92 3.85
5894 6336 6.688073 ATGTAATGAAGGGGTACTATGGAG 57.312 41.667 0.00 0.00 0.00 3.86
5895 6337 7.569485 TGTTATGTAATGAAGGGGTACTATGGA 59.431 37.037 0.00 0.00 0.00 3.41
5896 6338 7.741785 TGTTATGTAATGAAGGGGTACTATGG 58.258 38.462 0.00 0.00 0.00 2.74
5897 6339 9.793259 ATTGTTATGTAATGAAGGGGTACTATG 57.207 33.333 0.00 0.00 0.00 2.23
5898 6340 9.793259 CATTGTTATGTAATGAAGGGGTACTAT 57.207 33.333 0.00 0.00 37.65 2.12
5899 6341 8.215050 CCATTGTTATGTAATGAAGGGGTACTA 58.785 37.037 0.00 0.00 37.65 1.82
5900 6342 7.060421 CCATTGTTATGTAATGAAGGGGTACT 58.940 38.462 0.00 0.00 37.65 2.73
5901 6343 6.238925 GCCATTGTTATGTAATGAAGGGGTAC 60.239 42.308 0.00 0.00 37.65 3.34
5902 6344 5.830991 GCCATTGTTATGTAATGAAGGGGTA 59.169 40.000 0.00 0.00 37.65 3.69
5903 6345 4.649218 GCCATTGTTATGTAATGAAGGGGT 59.351 41.667 0.00 0.00 37.65 4.95
5904 6346 4.648762 TGCCATTGTTATGTAATGAAGGGG 59.351 41.667 0.00 0.00 37.65 4.79
5905 6347 5.850557 TGCCATTGTTATGTAATGAAGGG 57.149 39.130 0.00 0.00 37.65 3.95
5906 6348 6.042143 GGTTGCCATTGTTATGTAATGAAGG 58.958 40.000 0.00 0.00 37.65 3.46
5907 6349 6.042143 GGGTTGCCATTGTTATGTAATGAAG 58.958 40.000 0.00 0.00 37.65 3.02
5908 6350 5.393569 CGGGTTGCCATTGTTATGTAATGAA 60.394 40.000 0.00 0.00 37.65 2.57
5909 6351 4.097135 CGGGTTGCCATTGTTATGTAATGA 59.903 41.667 0.00 0.00 37.65 2.57
5910 6352 4.358851 CGGGTTGCCATTGTTATGTAATG 58.641 43.478 0.00 0.00 35.75 1.90
5911 6353 3.181480 GCGGGTTGCCATTGTTATGTAAT 60.181 43.478 0.00 0.00 37.76 1.89
5912 6354 2.164624 GCGGGTTGCCATTGTTATGTAA 59.835 45.455 0.00 0.00 37.76 2.41
5913 6355 1.746220 GCGGGTTGCCATTGTTATGTA 59.254 47.619 0.00 0.00 37.76 2.29
5914 6356 0.530288 GCGGGTTGCCATTGTTATGT 59.470 50.000 0.00 0.00 37.76 2.29
5915 6357 0.529833 TGCGGGTTGCCATTGTTATG 59.470 50.000 0.00 0.00 45.60 1.90
5916 6358 1.261480 TTGCGGGTTGCCATTGTTAT 58.739 45.000 0.00 0.00 45.60 1.89
5917 6359 1.040646 TTTGCGGGTTGCCATTGTTA 58.959 45.000 0.00 0.00 45.60 2.41
5918 6360 0.396060 ATTTGCGGGTTGCCATTGTT 59.604 45.000 0.00 0.00 45.60 2.83
5919 6361 0.396060 AATTTGCGGGTTGCCATTGT 59.604 45.000 0.00 0.00 45.60 2.71
5923 6365 0.755686 AGAAAATTTGCGGGTTGCCA 59.244 45.000 0.00 0.00 45.60 4.92
5944 6386 2.126228 GTCCACGAACGGATGCGA 60.126 61.111 15.49 0.00 37.41 5.10
5954 6396 0.252057 TGATCCCTCCTTGTCCACGA 60.252 55.000 0.00 0.00 0.00 4.35
5957 6399 2.040278 CAAACTGATCCCTCCTTGTCCA 59.960 50.000 0.00 0.00 0.00 4.02
5976 6418 0.757561 TCCCGTATCCATCTCCGCAA 60.758 55.000 0.00 0.00 0.00 4.85
5996 6438 0.602638 GATACGATTGGATGGCGGCA 60.603 55.000 16.34 16.34 0.00 5.69
6027 6469 6.633856 ACATTTGAATTTGAATCTACTGGCC 58.366 36.000 0.00 0.00 0.00 5.36
6035 6477 7.166473 GGATCAGCGTACATTTGAATTTGAATC 59.834 37.037 0.00 0.00 0.00 2.52
6219 6666 2.606826 ACCTCCTTGACCGGGGAC 60.607 66.667 6.32 0.00 0.00 4.46
6246 6693 3.138798 GGAGACTGCCTACGCGGA 61.139 66.667 12.47 0.00 44.91 5.54
6259 6706 3.822192 CGGATGCGGACGTGGAGA 61.822 66.667 0.00 0.00 0.00 3.71
6280 6733 3.774959 GACGATGAGGACGCCGCAT 62.775 63.158 13.18 13.18 46.19 4.73
6281 6734 4.492160 GACGATGAGGACGCCGCA 62.492 66.667 4.97 4.97 37.78 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.