Multiple sequence alignment - TraesCS3D01G229400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G229400 chr3D 100.000 8879 0 0 1 8879 312886571 312895449 0.000000e+00 16397.0
1 TraesCS3D01G229400 chr3D 99.412 170 1 0 5281 5450 275109523 275109354 8.660000e-80 309.0
2 TraesCS3D01G229400 chr3D 99.412 170 1 0 5281 5450 341508388 341508219 8.660000e-80 309.0
3 TraesCS3D01G229400 chr3B 96.414 5076 107 23 1 5049 407190416 407185389 0.000000e+00 8296.0
4 TraesCS3D01G229400 chr3B 94.494 1344 67 4 7228 8566 407183193 407181852 0.000000e+00 2065.0
5 TraesCS3D01G229400 chr3B 92.234 837 36 10 5709 6522 407184771 407183941 0.000000e+00 1158.0
6 TraesCS3D01G229400 chr3B 93.686 586 12 7 6448 7029 407183938 407183374 0.000000e+00 854.0
7 TraesCS3D01G229400 chr3B 96.591 176 3 1 5106 5278 407185276 407185101 1.130000e-73 289.0
8 TraesCS3D01G229400 chr3B 96.273 161 6 0 7083 7243 407183370 407183210 1.900000e-66 265.0
9 TraesCS3D01G229400 chr3B 97.279 147 2 1 5580 5726 407184872 407184728 1.910000e-61 248.0
10 TraesCS3D01G229400 chr3B 96.694 121 3 1 5447 5566 407185094 407184974 5.440000e-47 200.0
11 TraesCS3D01G229400 chr3B 80.110 181 27 6 8570 8742 257036428 257036249 9.360000e-25 126.0
12 TraesCS3D01G229400 chr3B 88.000 75 8 1 5139 5212 577519055 577518981 4.420000e-13 87.9
13 TraesCS3D01G229400 chr3B 100.000 31 0 0 5077 5107 407185388 407185358 3.460000e-04 58.4
14 TraesCS3D01G229400 chr3A 97.006 3106 84 6 491 3593 419543385 419540286 0.000000e+00 5212.0
15 TraesCS3D01G229400 chr3A 94.807 2696 106 14 6072 8747 419537604 419534923 0.000000e+00 4172.0
16 TraesCS3D01G229400 chr3A 96.012 1705 32 9 3596 5280 419540105 419538417 0.000000e+00 2739.0
17 TraesCS3D01G229400 chr3A 94.286 490 26 2 4 492 419544139 419543651 0.000000e+00 749.0
18 TraesCS3D01G229400 chr3A 88.748 631 13 12 5447 6075 419538412 419537838 0.000000e+00 719.0
19 TraesCS3D01G229400 chr3A 87.368 190 21 3 7896 8083 9999481 9999669 1.940000e-51 215.0
20 TraesCS3D01G229400 chr3A 85.714 189 25 2 7896 8083 452390983 452390796 1.960000e-46 198.0
21 TraesCS3D01G229400 chr3A 93.130 131 9 0 8742 8872 419534837 419534707 9.100000e-45 193.0
22 TraesCS3D01G229400 chr7D 99.412 170 1 0 5281 5450 511568914 511569083 8.660000e-80 309.0
23 TraesCS3D01G229400 chr7D 85.789 190 25 2 7895 8083 633922422 633922610 5.440000e-47 200.0
24 TraesCS3D01G229400 chr7D 85.789 190 24 3 7895 8083 25769431 25769244 1.960000e-46 198.0
25 TraesCS3D01G229400 chr7D 79.006 181 31 3 8572 8745 133329065 133328885 5.630000e-22 117.0
26 TraesCS3D01G229400 chr6A 99.412 170 1 0 5281 5450 410901500 410901669 8.660000e-80 309.0
27 TraesCS3D01G229400 chr5D 99.412 170 1 0 5281 5450 238175840 238176009 8.660000e-80 309.0
28 TraesCS3D01G229400 chr5D 99.412 170 1 0 5281 5450 434383376 434383545 8.660000e-80 309.0
29 TraesCS3D01G229400 chr5D 95.455 44 2 0 5139 5182 446914512 446914469 4.450000e-08 71.3
30 TraesCS3D01G229400 chr4D 99.412 170 1 0 5281 5450 313597759 313597590 8.660000e-80 309.0
31 TraesCS3D01G229400 chr1D 99.412 170 1 0 5281 5450 493220720 493220551 8.660000e-80 309.0
32 TraesCS3D01G229400 chr1D 83.333 276 43 1 3139 3414 483514750 483515022 1.480000e-62 252.0
33 TraesCS3D01G229400 chr1A 99.412 170 1 0 5281 5450 396445679 396445848 8.660000e-80 309.0
34 TraesCS3D01G229400 chr1A 83.333 276 43 1 3139 3414 580422620 580422892 1.480000e-62 252.0
35 TraesCS3D01G229400 chr1B 82.971 276 44 1 3139 3414 673743469 673743741 6.880000e-61 246.0
36 TraesCS3D01G229400 chr6B 86.387 191 23 3 7895 8083 34445809 34445620 1.170000e-48 206.0
37 TraesCS3D01G229400 chr7B 86.170 188 24 2 7896 8083 726773281 726773096 1.510000e-47 202.0
38 TraesCS3D01G229400 chr2D 86.170 188 24 2 7896 8083 27470514 27470699 1.510000e-47 202.0
39 TraesCS3D01G229400 chr5A 86.131 137 19 0 8609 8745 374620953 374620817 2.000000e-31 148.0
40 TraesCS3D01G229400 chr5A 90.909 44 4 0 5139 5182 565544778 565544821 9.630000e-05 60.2
41 TraesCS3D01G229400 chr2B 81.287 171 26 6 8574 8739 25846818 25846649 5.590000e-27 134.0
42 TraesCS3D01G229400 chr5B 78.771 179 27 9 8570 8743 634516113 634516285 9.420000e-20 110.0
43 TraesCS3D01G229400 chr5B 78.453 181 25 12 8570 8743 634472286 634472459 1.220000e-18 106.0
44 TraesCS3D01G229400 chr5B 78.453 181 25 12 8570 8743 634481591 634481764 1.220000e-18 106.0
45 TraesCS3D01G229400 chr5B 77.901 181 26 12 8570 8743 634491080 634491253 5.670000e-17 100.0
46 TraesCS3D01G229400 chr5B 94.737 38 2 0 5139 5176 545796088 545796125 9.630000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G229400 chr3D 312886571 312895449 8878 False 16397.000000 16397 100.000000 1 8879 1 chr3D.!!$F1 8878
1 TraesCS3D01G229400 chr3B 407181852 407190416 8564 True 1492.600000 8296 95.962778 1 8566 9 chr3B.!!$R3 8565
2 TraesCS3D01G229400 chr3A 419534707 419544139 9432 True 2297.333333 5212 93.998167 4 8872 6 chr3A.!!$R2 8868

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
523 796 1.066716 TCCTAGGCGTACGCATGTTTT 60.067 47.619 37.99 19.10 44.11 2.43 F
1330 1612 0.532573 CTAGGAGAAGCAACGCCTCA 59.467 55.000 8.46 0.00 40.34 3.86 F
1956 2238 0.734309 TTTACTCGCATCGCTCGGTA 59.266 50.000 0.00 0.00 0.00 4.02 F
3270 3552 2.174639 TGCTGGTTTCTTGAAGAAGGGA 59.825 45.455 7.76 0.00 35.37 4.20 F
3438 3720 1.589779 GCGCCAGCAGCAATTAAATTC 59.410 47.619 0.00 0.00 44.04 2.17 F
5268 5835 0.105913 GGCCTGGAGTAGCCTAGACT 60.106 60.000 0.00 0.00 46.14 3.24 F
5400 5967 0.179037 GCTCTGGCACATGGATAGCA 60.179 55.000 0.00 0.00 38.20 3.49 F
5404 5971 0.256752 TGGCACATGGATAGCAAGCT 59.743 50.000 0.00 0.00 0.00 3.74 F
5431 5998 0.266152 ACCCCTGTCCATAGCTAGCT 59.734 55.000 23.12 23.12 0.00 3.32 F
5432 5999 0.972883 CCCCTGTCCATAGCTAGCTC 59.027 60.000 23.26 7.00 0.00 4.09 F
5433 6000 1.482177 CCCCTGTCCATAGCTAGCTCT 60.482 57.143 23.26 9.05 0.00 4.09 F
7432 8467 1.002251 CGTGGTTTTGGTATGCACGTT 60.002 47.619 0.00 0.00 0.00 3.99 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1344 1626 1.043816 TCTCCTTCAGATCGCCCATC 58.956 55.000 0.00 0.0 0.00 3.51 R
3179 3461 1.366319 ACCAGCCTCAGAAGAACCAT 58.634 50.000 0.00 0.0 0.00 3.55 R
3438 3720 1.590932 AGTGCAGCAGACTGTTCAAG 58.409 50.000 3.99 0.0 46.30 3.02 R
4583 5060 3.634910 TGAAAGCACCCTTGGTTAGAAAC 59.365 43.478 0.00 0.0 42.74 2.78 R
5381 5948 0.179037 TGCTATCCATGTGCCAGAGC 60.179 55.000 0.00 0.0 40.48 4.09 R
6745 7745 1.431633 TGGAGGGTTGTGACTAGGAGA 59.568 52.381 0.00 0.0 0.00 3.71 R
7080 8083 2.148446 TCCCTGATCCAAAATGCAGG 57.852 50.000 0.00 0.0 45.81 4.85 R
7081 8084 3.094572 ACTTCCCTGATCCAAAATGCAG 58.905 45.455 0.00 0.0 0.00 4.41 R
7167 8170 3.452264 AGCTGGAGTTGCACATATAGTCA 59.548 43.478 0.00 0.0 0.00 3.41 R
7432 8467 2.838202 CAGCTACCTAAACCCTTCAGGA 59.162 50.000 0.00 0.0 39.89 3.86 R
7506 8541 0.250510 GCCCTCCAATAGGTAGCTGC 60.251 60.000 4.27 0.0 44.90 5.25 R
8820 9953 0.028505 CTGGCCGCTCATTTCATTCG 59.971 55.000 0.00 0.0 0.00 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
154 155 3.569250 TTAAAGGCGCTTTCACCAATC 57.431 42.857 4.81 0.00 35.21 2.67
267 273 3.806625 TTCTTGCTTTGCTTGCTTCTT 57.193 38.095 0.00 0.00 0.00 2.52
350 356 4.404098 GGATCCAACCACGGCCGT 62.404 66.667 28.70 28.70 0.00 5.68
489 762 4.798387 GCACGTAAAAAGGGCAATGATAAG 59.202 41.667 0.00 0.00 38.06 1.73
501 774 5.468409 GGGCAATGATAAGAAAGAGTAGAGC 59.532 44.000 0.00 0.00 0.00 4.09
523 796 1.066716 TCCTAGGCGTACGCATGTTTT 60.067 47.619 37.99 19.10 44.11 2.43
537 810 7.766219 ACGCATGTTTTATTATAAGACGAGT 57.234 32.000 0.00 0.00 0.00 4.18
538 811 8.861033 ACGCATGTTTTATTATAAGACGAGTA 57.139 30.769 0.00 0.00 0.00 2.59
539 812 8.965172 ACGCATGTTTTATTATAAGACGAGTAG 58.035 33.333 0.00 0.00 0.00 2.57
796 1075 1.758592 GGTTCCCACCAGCTGTACA 59.241 57.895 13.81 0.00 43.61 2.90
807 1086 3.156714 CTGTACACACCCAGGCCA 58.843 61.111 5.01 0.00 0.00 5.36
981 1260 3.066203 CCGCTCAAATATAACCAACCACC 59.934 47.826 0.00 0.00 0.00 4.61
982 1261 3.242608 CGCTCAAATATAACCAACCACCG 60.243 47.826 0.00 0.00 0.00 4.94
983 1262 3.488553 GCTCAAATATAACCAACCACCGC 60.489 47.826 0.00 0.00 0.00 5.68
984 1263 3.945285 CTCAAATATAACCAACCACCGCT 59.055 43.478 0.00 0.00 0.00 5.52
1065 1347 1.107114 TTCTCTCTCATGGCGGACTC 58.893 55.000 0.00 0.00 0.00 3.36
1066 1348 0.753479 TCTCTCTCATGGCGGACTCC 60.753 60.000 0.00 0.00 0.00 3.85
1067 1349 0.754957 CTCTCTCATGGCGGACTCCT 60.755 60.000 0.00 0.00 0.00 3.69
1185 1467 3.953775 CCGGCCTCCCAACACACT 61.954 66.667 0.00 0.00 0.00 3.55
1300 1582 0.980231 AGATTGGAAGCTCTCGGCCT 60.980 55.000 0.00 0.00 43.05 5.19
1319 1601 1.825474 CTGGCGAGGAAACTAGGAGAA 59.175 52.381 0.00 0.00 44.43 2.87
1321 1603 1.471851 GGCGAGGAAACTAGGAGAAGC 60.472 57.143 0.00 0.00 44.43 3.86
1330 1612 0.532573 CTAGGAGAAGCAACGCCTCA 59.467 55.000 8.46 0.00 40.34 3.86
1599 1881 2.276740 CCGGTACCTCTACCCGGT 59.723 66.667 10.90 0.00 39.66 5.28
1839 2121 2.002586 CCACAAGAAGAGCACATACCG 58.997 52.381 0.00 0.00 0.00 4.02
1956 2238 0.734309 TTTACTCGCATCGCTCGGTA 59.266 50.000 0.00 0.00 0.00 4.02
2715 2997 4.965200 AGCTGAACTTGTAGAGGAAAGT 57.035 40.909 0.00 0.00 38.25 2.66
2894 3176 3.391296 AGCAGTCCTGAAAGTGAAGGTAA 59.609 43.478 0.00 0.00 34.94 2.85
2913 3195 7.902920 AGGTAAATGCAAGAAATATGACCAT 57.097 32.000 0.00 0.00 0.00 3.55
2922 3204 6.694411 GCAAGAAATATGACCATAACAGCAAG 59.306 38.462 0.00 0.00 0.00 4.01
3179 3461 4.358851 CGCACAAATTCTGGTTTTTCTCA 58.641 39.130 0.00 0.00 0.00 3.27
3270 3552 2.174639 TGCTGGTTTCTTGAAGAAGGGA 59.825 45.455 7.76 0.00 35.37 4.20
3438 3720 1.589779 GCGCCAGCAGCAATTAAATTC 59.410 47.619 0.00 0.00 44.04 2.17
3660 4120 3.165875 TGTGTTCTAGAAGGCTAGCAGT 58.834 45.455 18.24 2.55 43.13 4.40
3832 4293 3.244387 GGCTCAATAACTTTTGGCCCAAA 60.244 43.478 4.38 4.38 37.16 3.28
4075 4537 1.755179 TTTACTCGTACCTCCTCCCG 58.245 55.000 0.00 0.00 0.00 5.14
4356 4833 8.676401 GGGCTTTTATTTTGTAACGGATACTAA 58.324 33.333 0.00 0.00 35.42 2.24
4417 4894 8.428852 TCTAGCTAATTAGTTTGATACATGCCA 58.571 33.333 13.91 0.00 0.00 4.92
4583 5060 7.286546 TCCTGTAAGATCTAGATCCTGTTCTTG 59.713 40.741 25.88 10.62 38.58 3.02
4624 5101 8.358895 TGCTTTCATAAAATTGTGTTCTCATGA 58.641 29.630 0.00 0.00 0.00 3.07
4957 5438 2.634940 ACAGACTACCACACTTGCTCAT 59.365 45.455 0.00 0.00 0.00 2.90
5268 5835 0.105913 GGCCTGGAGTAGCCTAGACT 60.106 60.000 0.00 0.00 46.14 3.24
5280 5847 2.853707 AGCCTAGACTTGAGAGGGAGTA 59.146 50.000 0.00 0.00 0.00 2.59
5281 5848 3.269906 AGCCTAGACTTGAGAGGGAGTAA 59.730 47.826 0.00 0.00 0.00 2.24
5282 5849 3.382227 GCCTAGACTTGAGAGGGAGTAAC 59.618 52.174 0.00 0.00 0.00 2.50
5283 5850 4.601084 CCTAGACTTGAGAGGGAGTAACA 58.399 47.826 0.00 0.00 0.00 2.41
5284 5851 5.017490 CCTAGACTTGAGAGGGAGTAACAA 58.983 45.833 0.00 0.00 0.00 2.83
5285 5852 4.875561 AGACTTGAGAGGGAGTAACAAC 57.124 45.455 0.00 0.00 0.00 3.32
5286 5853 4.223953 AGACTTGAGAGGGAGTAACAACA 58.776 43.478 0.00 0.00 0.00 3.33
5287 5854 4.654262 AGACTTGAGAGGGAGTAACAACAA 59.346 41.667 0.00 0.00 0.00 2.83
5288 5855 4.704965 ACTTGAGAGGGAGTAACAACAAC 58.295 43.478 0.00 0.00 0.00 3.32
5289 5856 4.163458 ACTTGAGAGGGAGTAACAACAACA 59.837 41.667 0.00 0.00 0.00 3.33
5290 5857 4.764050 TGAGAGGGAGTAACAACAACAA 57.236 40.909 0.00 0.00 0.00 2.83
5291 5858 4.448210 TGAGAGGGAGTAACAACAACAAC 58.552 43.478 0.00 0.00 0.00 3.32
5292 5859 4.080807 TGAGAGGGAGTAACAACAACAACA 60.081 41.667 0.00 0.00 0.00 3.33
5293 5860 4.850680 AGAGGGAGTAACAACAACAACAA 58.149 39.130 0.00 0.00 0.00 2.83
5294 5861 4.638865 AGAGGGAGTAACAACAACAACAAC 59.361 41.667 0.00 0.00 0.00 3.32
5295 5862 4.337145 AGGGAGTAACAACAACAACAACA 58.663 39.130 0.00 0.00 0.00 3.33
5296 5863 4.767928 AGGGAGTAACAACAACAACAACAA 59.232 37.500 0.00 0.00 0.00 2.83
5297 5864 4.860352 GGGAGTAACAACAACAACAACAAC 59.140 41.667 0.00 0.00 0.00 3.32
5298 5865 5.462405 GGAGTAACAACAACAACAACAACA 58.538 37.500 0.00 0.00 0.00 3.33
5299 5866 5.921408 GGAGTAACAACAACAACAACAACAA 59.079 36.000 0.00 0.00 0.00 2.83
5300 5867 6.129035 GGAGTAACAACAACAACAACAACAAC 60.129 38.462 0.00 0.00 0.00 3.32
5301 5868 6.273825 AGTAACAACAACAACAACAACAACA 58.726 32.000 0.00 0.00 0.00 3.33
5302 5869 6.757010 AGTAACAACAACAACAACAACAACAA 59.243 30.769 0.00 0.00 0.00 2.83
5303 5870 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
5304 5871 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
5305 5872 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
5306 5873 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
5307 5874 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
5308 5875 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
5309 5876 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
5310 5877 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
5311 5878 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
5312 5879 6.128282 ACAACAACAACAACAACAACAACAAA 60.128 30.769 0.00 0.00 0.00 2.83
5313 5880 6.042144 ACAACAACAACAACAACAACAAAG 57.958 33.333 0.00 0.00 0.00 2.77
5314 5881 4.723879 ACAACAACAACAACAACAAAGC 57.276 36.364 0.00 0.00 0.00 3.51
5315 5882 3.496507 ACAACAACAACAACAACAAAGCC 59.503 39.130 0.00 0.00 0.00 4.35
5316 5883 3.676291 ACAACAACAACAACAAAGCCT 57.324 38.095 0.00 0.00 0.00 4.58
5317 5884 4.001618 ACAACAACAACAACAAAGCCTT 57.998 36.364 0.00 0.00 0.00 4.35
5318 5885 4.384940 ACAACAACAACAACAAAGCCTTT 58.615 34.783 0.00 0.00 0.00 3.11
5319 5886 5.542779 ACAACAACAACAACAAAGCCTTTA 58.457 33.333 0.00 0.00 0.00 1.85
5320 5887 5.637387 ACAACAACAACAACAAAGCCTTTAG 59.363 36.000 0.00 0.00 0.00 1.85
5321 5888 5.400066 ACAACAACAACAAAGCCTTTAGT 57.600 34.783 0.00 0.00 0.00 2.24
5322 5889 5.407502 ACAACAACAACAAAGCCTTTAGTC 58.592 37.500 0.00 0.00 0.00 2.59
5323 5890 4.649088 ACAACAACAAAGCCTTTAGTCC 57.351 40.909 0.00 0.00 0.00 3.85
5324 5891 3.383505 ACAACAACAAAGCCTTTAGTCCC 59.616 43.478 0.00 0.00 0.00 4.46
5325 5892 3.306472 ACAACAAAGCCTTTAGTCCCA 57.694 42.857 0.00 0.00 0.00 4.37
5326 5893 3.637769 ACAACAAAGCCTTTAGTCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
5327 5894 4.027437 ACAACAAAGCCTTTAGTCCCAAA 58.973 39.130 0.00 0.00 0.00 3.28
5328 5895 4.142026 ACAACAAAGCCTTTAGTCCCAAAC 60.142 41.667 0.00 0.00 0.00 2.93
5329 5896 3.637769 ACAAAGCCTTTAGTCCCAAACA 58.362 40.909 0.00 0.00 0.00 2.83
5330 5897 4.027437 ACAAAGCCTTTAGTCCCAAACAA 58.973 39.130 0.00 0.00 0.00 2.83
5331 5898 4.099419 ACAAAGCCTTTAGTCCCAAACAAG 59.901 41.667 0.00 0.00 0.00 3.16
5332 5899 3.595190 AGCCTTTAGTCCCAAACAAGT 57.405 42.857 0.00 0.00 0.00 3.16
5333 5900 3.910989 AGCCTTTAGTCCCAAACAAGTT 58.089 40.909 0.00 0.00 0.00 2.66
5334 5901 3.636764 AGCCTTTAGTCCCAAACAAGTTG 59.363 43.478 0.00 0.00 36.94 3.16
5343 5910 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
5344 5911 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
5345 5912 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
5346 5913 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
5347 5914 2.188817 ACAAGTTGGGGTAGGCTAGAG 58.811 52.381 7.96 0.00 0.00 2.43
5348 5915 1.486726 CAAGTTGGGGTAGGCTAGAGG 59.513 57.143 0.00 0.00 0.00 3.69
5349 5916 0.717196 AGTTGGGGTAGGCTAGAGGT 59.283 55.000 0.00 0.00 0.00 3.85
5350 5917 0.831307 GTTGGGGTAGGCTAGAGGTG 59.169 60.000 0.00 0.00 0.00 4.00
5351 5918 0.714180 TTGGGGTAGGCTAGAGGTGA 59.286 55.000 0.00 0.00 0.00 4.02
5352 5919 0.714180 TGGGGTAGGCTAGAGGTGAA 59.286 55.000 0.00 0.00 0.00 3.18
5353 5920 1.079825 TGGGGTAGGCTAGAGGTGAAA 59.920 52.381 0.00 0.00 0.00 2.69
5354 5921 1.485480 GGGGTAGGCTAGAGGTGAAAC 59.515 57.143 0.00 0.00 0.00 2.78
5369 5936 3.531538 GTGAAACCCATAAGATCTCGCA 58.468 45.455 0.00 0.00 0.00 5.10
5370 5937 3.938963 GTGAAACCCATAAGATCTCGCAA 59.061 43.478 0.00 0.00 0.00 4.85
5371 5938 3.938963 TGAAACCCATAAGATCTCGCAAC 59.061 43.478 0.00 0.00 0.00 4.17
5372 5939 2.622064 ACCCATAAGATCTCGCAACC 57.378 50.000 0.00 0.00 0.00 3.77
5373 5940 1.837439 ACCCATAAGATCTCGCAACCA 59.163 47.619 0.00 0.00 0.00 3.67
5374 5941 2.238646 ACCCATAAGATCTCGCAACCAA 59.761 45.455 0.00 0.00 0.00 3.67
5375 5942 2.614057 CCCATAAGATCTCGCAACCAAC 59.386 50.000 0.00 0.00 0.00 3.77
5376 5943 3.535561 CCATAAGATCTCGCAACCAACT 58.464 45.455 0.00 0.00 0.00 3.16
5377 5944 3.557595 CCATAAGATCTCGCAACCAACTC 59.442 47.826 0.00 0.00 0.00 3.01
5378 5945 2.839486 AAGATCTCGCAACCAACTCA 57.161 45.000 0.00 0.00 0.00 3.41
5379 5946 3.340814 AAGATCTCGCAACCAACTCAT 57.659 42.857 0.00 0.00 0.00 2.90
5380 5947 2.625737 AGATCTCGCAACCAACTCATG 58.374 47.619 0.00 0.00 0.00 3.07
5388 5955 3.915575 CCAACTCATGGCTCTGGC 58.084 61.111 0.00 0.00 43.80 4.85
5389 5956 1.001764 CCAACTCATGGCTCTGGCA 60.002 57.895 0.00 0.00 43.80 4.92
5390 5957 1.310933 CCAACTCATGGCTCTGGCAC 61.311 60.000 0.00 0.00 43.80 5.01
5391 5958 0.607217 CAACTCATGGCTCTGGCACA 60.607 55.000 0.00 0.00 41.84 4.57
5392 5959 0.330604 AACTCATGGCTCTGGCACAT 59.669 50.000 0.00 0.00 41.84 3.21
5393 5960 0.393944 ACTCATGGCTCTGGCACATG 60.394 55.000 8.97 8.97 41.84 3.21
5394 5961 1.077285 TCATGGCTCTGGCACATGG 60.077 57.895 13.76 0.00 41.84 3.66
5395 5962 1.077285 CATGGCTCTGGCACATGGA 60.077 57.895 7.68 0.00 41.84 3.41
5396 5963 0.467474 CATGGCTCTGGCACATGGAT 60.467 55.000 7.68 0.00 41.84 3.41
5397 5964 1.142936 ATGGCTCTGGCACATGGATA 58.857 50.000 0.00 0.00 41.84 2.59
5398 5965 0.471191 TGGCTCTGGCACATGGATAG 59.529 55.000 0.00 0.00 38.20 2.08
5399 5966 0.888285 GGCTCTGGCACATGGATAGC 60.888 60.000 0.00 0.00 38.20 2.97
5400 5967 0.179037 GCTCTGGCACATGGATAGCA 60.179 55.000 0.00 0.00 38.20 3.49
5401 5968 1.748244 GCTCTGGCACATGGATAGCAA 60.748 52.381 0.00 0.00 38.20 3.91
5402 5969 2.219458 CTCTGGCACATGGATAGCAAG 58.781 52.381 0.00 0.00 38.20 4.01
5403 5970 0.666913 CTGGCACATGGATAGCAAGC 59.333 55.000 0.00 0.00 38.20 4.01
5404 5971 0.256752 TGGCACATGGATAGCAAGCT 59.743 50.000 0.00 0.00 0.00 3.74
5405 5972 1.341285 TGGCACATGGATAGCAAGCTT 60.341 47.619 0.00 0.00 0.00 3.74
5406 5973 1.336125 GGCACATGGATAGCAAGCTTC 59.664 52.381 0.00 0.00 0.00 3.86
5407 5974 1.336125 GCACATGGATAGCAAGCTTCC 59.664 52.381 0.00 7.95 0.00 3.46
5408 5975 2.646930 CACATGGATAGCAAGCTTCCA 58.353 47.619 20.33 20.33 43.37 3.53
5409 5976 2.357009 CACATGGATAGCAAGCTTCCAC 59.643 50.000 20.41 0.00 42.09 4.02
5410 5977 1.600957 CATGGATAGCAAGCTTCCACG 59.399 52.381 20.41 13.24 42.09 4.94
5411 5978 0.744414 TGGATAGCAAGCTTCCACGC 60.744 55.000 16.61 0.00 34.65 5.34
5412 5979 0.744414 GGATAGCAAGCTTCCACGCA 60.744 55.000 8.96 0.00 0.00 5.24
5413 5980 0.375106 GATAGCAAGCTTCCACGCAC 59.625 55.000 8.96 0.00 0.00 5.34
5414 5981 1.026718 ATAGCAAGCTTCCACGCACC 61.027 55.000 8.96 0.00 0.00 5.01
5415 5982 4.043200 GCAAGCTTCCACGCACCC 62.043 66.667 0.00 0.00 0.00 4.61
5416 5983 3.365265 CAAGCTTCCACGCACCCC 61.365 66.667 0.00 0.00 0.00 4.95
5417 5984 3.570212 AAGCTTCCACGCACCCCT 61.570 61.111 0.00 0.00 0.00 4.79
5418 5985 3.850098 AAGCTTCCACGCACCCCTG 62.850 63.158 0.00 0.00 0.00 4.45
5419 5986 4.643387 GCTTCCACGCACCCCTGT 62.643 66.667 0.00 0.00 0.00 4.00
5420 5987 2.358737 CTTCCACGCACCCCTGTC 60.359 66.667 0.00 0.00 0.00 3.51
5421 5988 3.901797 CTTCCACGCACCCCTGTCC 62.902 68.421 0.00 0.00 0.00 4.02
5423 5990 4.033776 CCACGCACCCCTGTCCAT 62.034 66.667 0.00 0.00 0.00 3.41
5424 5991 2.665089 CCACGCACCCCTGTCCATA 61.665 63.158 0.00 0.00 0.00 2.74
5425 5992 1.153369 CACGCACCCCTGTCCATAG 60.153 63.158 0.00 0.00 0.00 2.23
5426 5993 2.203070 CGCACCCCTGTCCATAGC 60.203 66.667 0.00 0.00 0.00 2.97
5427 5994 2.735772 CGCACCCCTGTCCATAGCT 61.736 63.158 0.00 0.00 0.00 3.32
5428 5995 1.399744 CGCACCCCTGTCCATAGCTA 61.400 60.000 0.00 0.00 0.00 3.32
5429 5996 0.394565 GCACCCCTGTCCATAGCTAG 59.605 60.000 0.00 0.00 0.00 3.42
5430 5997 0.394565 CACCCCTGTCCATAGCTAGC 59.605 60.000 6.62 6.62 0.00 3.42
5431 5998 0.266152 ACCCCTGTCCATAGCTAGCT 59.734 55.000 23.12 23.12 0.00 3.32
5432 5999 0.972883 CCCCTGTCCATAGCTAGCTC 59.027 60.000 23.26 7.00 0.00 4.09
5433 6000 1.482177 CCCCTGTCCATAGCTAGCTCT 60.482 57.143 23.26 9.05 0.00 4.09
5434 6001 2.324541 CCCTGTCCATAGCTAGCTCTT 58.675 52.381 23.26 7.47 0.00 2.85
5435 6002 2.703007 CCCTGTCCATAGCTAGCTCTTT 59.297 50.000 23.26 4.57 0.00 2.52
5436 6003 3.494048 CCCTGTCCATAGCTAGCTCTTTG 60.494 52.174 23.26 16.78 0.00 2.77
5437 6004 3.494048 CCTGTCCATAGCTAGCTCTTTGG 60.494 52.174 23.26 24.37 36.78 3.28
5438 6005 3.107601 TGTCCATAGCTAGCTCTTTGGT 58.892 45.455 27.50 8.05 36.79 3.67
5439 6006 3.118629 TGTCCATAGCTAGCTCTTTGGTG 60.119 47.826 27.50 16.61 36.79 4.17
5440 6007 3.133003 GTCCATAGCTAGCTCTTTGGTGA 59.867 47.826 27.50 15.24 36.79 4.02
5441 6008 3.969976 TCCATAGCTAGCTCTTTGGTGAT 59.030 43.478 27.50 12.14 36.79 3.06
5442 6009 5.011125 GTCCATAGCTAGCTCTTTGGTGATA 59.989 44.000 27.50 14.48 36.79 2.15
5443 6010 5.011125 TCCATAGCTAGCTCTTTGGTGATAC 59.989 44.000 27.50 0.00 36.79 2.24
5444 6011 5.011533 CCATAGCTAGCTCTTTGGTGATACT 59.988 44.000 23.26 0.00 32.65 2.12
5445 6012 4.664150 AGCTAGCTCTTTGGTGATACTC 57.336 45.455 12.68 0.00 0.00 2.59
5559 6127 8.832458 TCCATCATATTATTACCGAGTCCATA 57.168 34.615 0.00 0.00 0.00 2.74
5570 6226 5.769484 ACCGAGTCCATAGTACTATGTTG 57.231 43.478 31.46 21.41 40.90 3.33
5758 6414 5.692204 CAGTTTAGCTATATCACGTTCCCAG 59.308 44.000 0.00 0.00 0.00 4.45
5782 6438 2.894307 CTTTCTTTAAGCCGTTCCCG 57.106 50.000 0.00 0.00 0.00 5.14
5911 6569 5.874810 TCATCTATTACGCAAAAAGAGCAGT 59.125 36.000 0.00 0.00 0.00 4.40
5971 6629 7.395617 AGGGGTTGTCTCTAGTTAAAATTCTC 58.604 38.462 0.00 0.00 0.00 2.87
6239 7141 5.277779 CCTTGCGAGTGAACAACTTATGAAA 60.278 40.000 0.00 0.00 40.07 2.69
6303 7205 5.643421 ATCTGGAAGCAAGAGATGGTATT 57.357 39.130 0.00 0.00 39.29 1.89
6327 7243 8.888579 TTTTAAACCATTTTCGCTTGGATTTA 57.111 26.923 0.00 0.00 36.79 1.40
6503 7497 6.573434 TCATGTACCAGCTAAGTGAATGTAG 58.427 40.000 0.00 0.00 0.00 2.74
7099 8102 2.148446 CCTGCATTTTGGATCAGGGA 57.852 50.000 0.00 0.00 41.71 4.20
7306 8341 4.834534 TGCAGCCATTTTGATAGCATTTT 58.165 34.783 0.00 0.00 0.00 1.82
7432 8467 1.002251 CGTGGTTTTGGTATGCACGTT 60.002 47.619 0.00 0.00 0.00 3.99
7506 8541 3.887621 TCAGTTTAATCACCTCCCTCG 57.112 47.619 0.00 0.00 0.00 4.63
7747 8784 7.272299 GCTAATTTCTCTGCAGCTTTTTCTTAC 59.728 37.037 9.47 0.00 0.00 2.34
7849 8889 8.712103 TCCTAGCGCTATACCTTCTCTAATATA 58.288 37.037 19.19 0.00 0.00 0.86
7888 8928 6.650120 TGTTACTATTTGATCACCTCTTCCC 58.350 40.000 0.00 0.00 0.00 3.97
8079 9121 9.398170 CTCGAGATACAAAAATGACAAATTTGT 57.602 29.630 23.49 23.49 46.01 2.83
8115 9157 2.025969 CATATGGCGCTCTGCTCCG 61.026 63.158 7.64 0.00 45.43 4.63
8116 9158 2.502492 ATATGGCGCTCTGCTCCGT 61.502 57.895 7.64 0.00 45.43 4.69
8132 9174 3.123804 CTCCGTTGAGCTTGCGTATTAT 58.876 45.455 0.00 0.00 0.00 1.28
8138 9180 6.456449 CCGTTGAGCTTGCGTATTATAAGTTT 60.456 38.462 0.00 0.00 0.00 2.66
8204 9246 3.057736 CCAAATCCTGACTGAGCTTGTTG 60.058 47.826 0.00 0.00 0.00 3.33
8258 9300 1.334869 CAGGTCCATATTTTGCGCTCC 59.665 52.381 9.73 0.00 0.00 4.70
8400 9442 5.524281 GCCAATTTTTCGGTCCAAAAGTTAA 59.476 36.000 6.83 0.00 0.00 2.01
8418 9460 5.445964 AGTTAAAAGCTGAACCAAAGAGGA 58.554 37.500 0.00 0.00 41.22 3.71
8424 9466 2.357569 GCTGAACCAAAGAGGATGGGAT 60.358 50.000 0.00 0.00 42.48 3.85
8438 9480 0.965439 TGGGATTTTCCAGCAAACCG 59.035 50.000 0.00 0.00 38.64 4.44
8486 9528 0.109597 GTGCAATTTCCACAGCCGAG 60.110 55.000 0.00 0.00 33.50 4.63
8508 9550 6.002653 AGATACCCTAACTTTTGTGATCCC 57.997 41.667 0.00 0.00 0.00 3.85
8518 9560 1.289160 TTGTGATCCCAGGCTAGCTT 58.711 50.000 15.72 3.40 0.00 3.74
8568 9610 3.691609 GCCCATGAAAGTTCTAAGTCAGG 59.308 47.826 0.00 0.00 0.00 3.86
8593 9635 5.460091 GCTCGCATTTTCCTGAATTTATTCC 59.540 40.000 0.32 0.00 35.97 3.01
8602 9644 6.062258 TCCTGAATTTATTCCGGACTTTCT 57.938 37.500 1.83 0.00 42.71 2.52
8610 9652 6.737254 TTATTCCGGACTTTCTGTTCATTC 57.263 37.500 1.83 0.00 0.00 2.67
8618 9660 5.407995 GGACTTTCTGTTCATTCAGTGAGAG 59.592 44.000 0.00 0.00 38.29 3.20
8621 9663 4.797800 TCTGTTCATTCAGTGAGAGGAG 57.202 45.455 0.00 0.00 38.29 3.69
8644 9686 3.511934 ACATTCCCATCGACTATAGAGGC 59.488 47.826 6.78 0.00 0.00 4.70
8656 9698 4.402829 ACTATAGAGGCGTCTGTGATGAT 58.597 43.478 18.96 5.83 33.84 2.45
8660 9702 1.590238 GAGGCGTCTGTGATGATTTCG 59.410 52.381 0.00 0.00 0.00 3.46
8666 9708 4.780324 GCGTCTGTGATGATTTCGTCAATC 60.780 45.833 4.11 3.88 42.83 2.67
8673 9715 6.820152 TGTGATGATTTCGTCAATCTCAAGAT 59.180 34.615 4.11 0.00 42.83 2.40
8681 9723 5.105063 TCGTCAATCTCAAGATGATGTGTC 58.895 41.667 0.00 0.00 34.49 3.67
8686 9728 2.234661 TCTCAAGATGATGTGTCGGCTT 59.765 45.455 0.00 0.00 0.00 4.35
8688 9730 3.785486 TCAAGATGATGTGTCGGCTTAG 58.215 45.455 0.00 0.00 0.00 2.18
8692 9734 2.941453 TGATGTGTCGGCTTAGTCTC 57.059 50.000 0.00 0.00 0.00 3.36
8705 9747 2.024176 TAGTCTCTTGAAGGTGCCCA 57.976 50.000 0.00 0.00 0.00 5.36
8709 9751 3.118112 AGTCTCTTGAAGGTGCCCATATG 60.118 47.826 0.00 0.00 0.00 1.78
8726 9768 2.440517 ATGGGTAGAATGTGCATGCA 57.559 45.000 18.46 18.46 0.00 3.96
8727 9769 1.462616 TGGGTAGAATGTGCATGCAC 58.537 50.000 38.00 38.00 46.33 4.57
8738 9780 1.328680 GTGCATGCACTCGTTCATAGG 59.671 52.381 37.48 0.00 43.12 2.57
8750 9883 6.696148 CACTCGTTCATAGGGTGAGTATTTAC 59.304 42.308 0.00 0.00 37.79 2.01
8763 9896 4.141574 TGAGTATTTACCCACCTATGCCAC 60.142 45.833 0.00 0.00 0.00 5.01
8765 9898 1.676248 TTTACCCACCTATGCCACCT 58.324 50.000 0.00 0.00 0.00 4.00
8783 9916 8.644374 TGCCACCTATAAGTAAAATTCACTTT 57.356 30.769 9.85 3.30 37.42 2.66
8820 9953 2.481104 CGAGTGAATCAGAGAGCCTTCC 60.481 54.545 0.00 0.00 0.00 3.46
8821 9954 1.480137 AGTGAATCAGAGAGCCTTCCG 59.520 52.381 0.00 0.00 0.00 4.30
8837 9970 1.095228 TCCGAATGAAATGAGCGGCC 61.095 55.000 0.00 0.00 41.61 6.13
8864 9997 3.369175 AGCCTTTCATTCCCAGAAATCC 58.631 45.455 0.00 0.00 34.75 3.01
8872 10005 0.999712 TCCCAGAAATCCCCTTGTCC 59.000 55.000 0.00 0.00 0.00 4.02
8873 10006 1.002857 CCCAGAAATCCCCTTGTCCT 58.997 55.000 0.00 0.00 0.00 3.85
8874 10007 2.205342 CCCAGAAATCCCCTTGTCCTA 58.795 52.381 0.00 0.00 0.00 2.94
8875 10008 2.173569 CCCAGAAATCCCCTTGTCCTAG 59.826 54.545 0.00 0.00 0.00 3.02
8876 10009 2.846827 CCAGAAATCCCCTTGTCCTAGT 59.153 50.000 0.00 0.00 0.00 2.57
8877 10010 3.267031 CCAGAAATCCCCTTGTCCTAGTT 59.733 47.826 0.00 0.00 0.00 2.24
8878 10011 4.518249 CAGAAATCCCCTTGTCCTAGTTC 58.482 47.826 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 98 5.405935 AACATGGAAAAGAAACCTATGGC 57.594 39.130 0.00 0.00 0.00 4.40
154 155 2.561037 GCACCACAAGTTTCCCCGG 61.561 63.158 0.00 0.00 0.00 5.73
267 273 0.320421 CGGCAGGACGAGAAAAAGGA 60.320 55.000 0.00 0.00 35.47 3.36
350 356 0.747255 GCCTTCGATGTGAGAGGCTA 59.253 55.000 14.90 0.00 42.62 3.93
354 360 1.728971 GTGTTGCCTTCGATGTGAGAG 59.271 52.381 0.00 0.00 0.00 3.20
489 762 2.033675 GCCTAGGACGCTCTACTCTTTC 59.966 54.545 14.75 0.00 0.00 2.62
564 837 4.272504 ACATACGTTCCGCAATTTATCCAG 59.727 41.667 0.00 0.00 0.00 3.86
603 876 5.118510 CCAAACATTGCGACAAAAGAATACC 59.881 40.000 0.00 0.00 0.00 2.73
818 1097 2.156098 TCAAAGAGCTGGGCCCACT 61.156 57.895 24.45 23.11 0.00 4.00
981 1260 1.002544 ACAAGGGAAAAGAGGAGAGCG 59.997 52.381 0.00 0.00 0.00 5.03
982 1261 2.705730 GACAAGGGAAAAGAGGAGAGC 58.294 52.381 0.00 0.00 0.00 4.09
983 1262 2.300437 ACGACAAGGGAAAAGAGGAGAG 59.700 50.000 0.00 0.00 0.00 3.20
984 1263 2.299297 GACGACAAGGGAAAAGAGGAGA 59.701 50.000 0.00 0.00 0.00 3.71
1178 1460 4.988598 CCGCGGGCTCAGTGTGTT 62.989 66.667 20.10 0.00 0.00 3.32
1300 1582 1.825474 CTTCTCCTAGTTTCCTCGCCA 59.175 52.381 0.00 0.00 0.00 5.69
1319 1601 3.710722 CCTCCCTGAGGCGTTGCT 61.711 66.667 0.00 0.00 43.29 3.91
1344 1626 1.043816 TCTCCTTCAGATCGCCCATC 58.956 55.000 0.00 0.00 0.00 3.51
1839 2121 1.506493 CAGCGAAGTATCTGGCCATC 58.494 55.000 5.51 0.00 0.00 3.51
1956 2238 7.544804 AAAATACTCAGCCCTTTTCTTTGAT 57.455 32.000 0.00 0.00 0.00 2.57
2369 2651 2.746362 CTCCTGTTTGAGCCACATTCTC 59.254 50.000 0.00 0.00 0.00 2.87
2397 2679 6.126825 ACAGAGAGATACCATCTGCTTTTGAT 60.127 38.462 1.50 0.00 43.42 2.57
2400 2682 5.424895 AGACAGAGAGATACCATCTGCTTTT 59.575 40.000 1.50 0.00 43.42 2.27
2894 3176 7.147863 TGCTGTTATGGTCATATTTCTTGCATT 60.148 33.333 0.00 0.00 0.00 3.56
2913 3195 5.278463 GCTTGTTTCATCTTCCTTGCTGTTA 60.278 40.000 0.00 0.00 0.00 2.41
2922 3204 2.160417 CAGACCGCTTGTTTCATCTTCC 59.840 50.000 0.00 0.00 0.00 3.46
2996 3278 3.044059 GCATGTTCGAGGGCACTGC 62.044 63.158 0.00 0.00 0.00 4.40
3179 3461 1.366319 ACCAGCCTCAGAAGAACCAT 58.634 50.000 0.00 0.00 0.00 3.55
3270 3552 9.374711 TGGTTAAATAAAGAAAGGTCCTTGAAT 57.625 29.630 4.45 0.00 0.00 2.57
3438 3720 1.590932 AGTGCAGCAGACTGTTCAAG 58.409 50.000 3.99 0.00 46.30 3.02
3832 4293 5.122869 GTGCAATCTGTATGAGATGTGTGTT 59.877 40.000 0.00 0.00 40.89 3.32
3999 4461 5.243426 TGTGAATGATTGCATCTCACATG 57.757 39.130 10.83 0.00 41.72 3.21
4356 4833 6.658391 GCCAGATTATCTAATTGATGGCTCTT 59.342 38.462 18.18 0.00 41.62 2.85
4417 4894 8.762645 TGAACCAATAGAAGTTCATCATAGAGT 58.237 33.333 5.50 0.00 45.53 3.24
4583 5060 3.634910 TGAAAGCACCCTTGGTTAGAAAC 59.365 43.478 0.00 0.00 42.74 2.78
5268 5835 4.764050 TGTTGTTGTTACTCCCTCTCAA 57.236 40.909 0.00 0.00 0.00 3.02
5280 5847 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
5281 5848 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
5282 5849 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
5283 5850 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
5284 5851 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
5285 5852 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
5286 5853 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
5287 5854 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
5288 5855 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
5289 5856 6.422776 TTTGTTGTTGTTGTTGTTGTTGTT 57.577 29.167 0.00 0.00 0.00 2.83
5290 5857 5.503194 GCTTTGTTGTTGTTGTTGTTGTTGT 60.503 36.000 0.00 0.00 0.00 3.32
5291 5858 4.903016 GCTTTGTTGTTGTTGTTGTTGTTG 59.097 37.500 0.00 0.00 0.00 3.33
5292 5859 4.024472 GGCTTTGTTGTTGTTGTTGTTGTT 60.024 37.500 0.00 0.00 0.00 2.83
5293 5860 3.496507 GGCTTTGTTGTTGTTGTTGTTGT 59.503 39.130 0.00 0.00 0.00 3.32
5294 5861 3.745458 AGGCTTTGTTGTTGTTGTTGTTG 59.255 39.130 0.00 0.00 0.00 3.33
5295 5862 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
5296 5863 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
5297 5864 5.637387 ACTAAAGGCTTTGTTGTTGTTGTTG 59.363 36.000 22.32 0.00 0.00 3.33
5298 5865 5.789521 ACTAAAGGCTTTGTTGTTGTTGTT 58.210 33.333 22.32 0.00 0.00 2.83
5299 5866 5.400066 ACTAAAGGCTTTGTTGTTGTTGT 57.600 34.783 22.32 0.00 0.00 3.32
5300 5867 4.803613 GGACTAAAGGCTTTGTTGTTGTTG 59.196 41.667 22.32 0.00 0.00 3.33
5301 5868 4.142026 GGGACTAAAGGCTTTGTTGTTGTT 60.142 41.667 22.32 0.00 0.00 2.83
5302 5869 3.383505 GGGACTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 10.58 0.00 3.32
5303 5870 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
5304 5871 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
5305 5872 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
5306 5873 4.142049 TGTTTGGGACTAAAGGCTTTGTTG 60.142 41.667 22.32 13.85 0.00 3.33
5307 5874 4.027437 TGTTTGGGACTAAAGGCTTTGTT 58.973 39.130 22.32 8.73 0.00 2.83
5308 5875 3.637769 TGTTTGGGACTAAAGGCTTTGT 58.362 40.909 22.32 16.86 0.00 2.83
5309 5876 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
5310 5877 4.286707 ACTTGTTTGGGACTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
5311 5878 3.910989 ACTTGTTTGGGACTAAAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
5312 5879 3.595190 ACTTGTTTGGGACTAAAGGCT 57.405 42.857 0.00 0.00 0.00 4.58
5313 5880 3.977427 CAACTTGTTTGGGACTAAAGGC 58.023 45.455 0.00 0.00 0.00 4.35
5324 5891 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
5325 5892 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
5326 5893 2.572104 CTCTAGCCTACCCCAACTTGTT 59.428 50.000 0.00 0.00 0.00 2.83
5327 5894 2.188817 CTCTAGCCTACCCCAACTTGT 58.811 52.381 0.00 0.00 0.00 3.16
5328 5895 1.486726 CCTCTAGCCTACCCCAACTTG 59.513 57.143 0.00 0.00 0.00 3.16
5329 5896 1.080666 ACCTCTAGCCTACCCCAACTT 59.919 52.381 0.00 0.00 0.00 2.66
5330 5897 0.717196 ACCTCTAGCCTACCCCAACT 59.283 55.000 0.00 0.00 0.00 3.16
5331 5898 0.831307 CACCTCTAGCCTACCCCAAC 59.169 60.000 0.00 0.00 0.00 3.77
5332 5899 0.714180 TCACCTCTAGCCTACCCCAA 59.286 55.000 0.00 0.00 0.00 4.12
5333 5900 0.714180 TTCACCTCTAGCCTACCCCA 59.286 55.000 0.00 0.00 0.00 4.96
5334 5901 1.485480 GTTTCACCTCTAGCCTACCCC 59.515 57.143 0.00 0.00 0.00 4.95
5335 5902 1.485480 GGTTTCACCTCTAGCCTACCC 59.515 57.143 0.00 0.00 34.73 3.69
5336 5903 1.485480 GGGTTTCACCTCTAGCCTACC 59.515 57.143 0.00 0.00 38.64 3.18
5337 5904 2.185387 TGGGTTTCACCTCTAGCCTAC 58.815 52.381 0.00 0.00 38.64 3.18
5338 5905 2.634639 TGGGTTTCACCTCTAGCCTA 57.365 50.000 0.00 0.00 38.64 3.93
5339 5906 1.972588 ATGGGTTTCACCTCTAGCCT 58.027 50.000 0.00 0.00 38.64 4.58
5340 5907 3.454812 TCTTATGGGTTTCACCTCTAGCC 59.545 47.826 0.00 0.00 38.64 3.93
5341 5908 4.755266 TCTTATGGGTTTCACCTCTAGC 57.245 45.455 0.00 0.00 38.64 3.42
5342 5909 6.515862 CGAGATCTTATGGGTTTCACCTCTAG 60.516 46.154 0.00 0.00 38.64 2.43
5343 5910 5.302059 CGAGATCTTATGGGTTTCACCTCTA 59.698 44.000 0.00 0.00 38.64 2.43
5344 5911 4.100189 CGAGATCTTATGGGTTTCACCTCT 59.900 45.833 0.00 0.00 38.64 3.69
5345 5912 4.372656 CGAGATCTTATGGGTTTCACCTC 58.627 47.826 0.00 0.00 38.64 3.85
5346 5913 3.432326 GCGAGATCTTATGGGTTTCACCT 60.432 47.826 0.00 0.00 38.64 4.00
5347 5914 2.872858 GCGAGATCTTATGGGTTTCACC 59.127 50.000 0.00 0.00 37.60 4.02
5348 5915 3.531538 TGCGAGATCTTATGGGTTTCAC 58.468 45.455 0.00 0.00 0.00 3.18
5349 5916 3.904800 TGCGAGATCTTATGGGTTTCA 57.095 42.857 0.00 0.00 0.00 2.69
5350 5917 3.312697 GGTTGCGAGATCTTATGGGTTTC 59.687 47.826 0.00 0.00 0.00 2.78
5351 5918 3.279434 GGTTGCGAGATCTTATGGGTTT 58.721 45.455 0.00 0.00 0.00 3.27
5352 5919 2.238646 TGGTTGCGAGATCTTATGGGTT 59.761 45.455 0.00 0.00 0.00 4.11
5353 5920 1.837439 TGGTTGCGAGATCTTATGGGT 59.163 47.619 0.00 0.00 0.00 4.51
5354 5921 2.614057 GTTGGTTGCGAGATCTTATGGG 59.386 50.000 0.00 0.00 0.00 4.00
5355 5922 3.535561 AGTTGGTTGCGAGATCTTATGG 58.464 45.455 0.00 0.00 0.00 2.74
5356 5923 4.183865 TGAGTTGGTTGCGAGATCTTATG 58.816 43.478 0.00 0.00 0.00 1.90
5357 5924 4.471904 TGAGTTGGTTGCGAGATCTTAT 57.528 40.909 0.00 0.00 0.00 1.73
5358 5925 3.953712 TGAGTTGGTTGCGAGATCTTA 57.046 42.857 0.00 0.00 0.00 2.10
5359 5926 2.839486 TGAGTTGGTTGCGAGATCTT 57.161 45.000 0.00 0.00 0.00 2.40
5360 5927 2.625737 CATGAGTTGGTTGCGAGATCT 58.374 47.619 0.00 0.00 0.00 2.75
5361 5928 1.667724 CCATGAGTTGGTTGCGAGATC 59.332 52.381 0.00 0.00 40.99 2.75
5362 5929 1.742761 CCATGAGTTGGTTGCGAGAT 58.257 50.000 0.00 0.00 40.99 2.75
5363 5930 3.231734 CCATGAGTTGGTTGCGAGA 57.768 52.632 0.00 0.00 40.99 4.04
5372 5939 0.607217 TGTGCCAGAGCCATGAGTTG 60.607 55.000 0.00 0.00 38.69 3.16
5373 5940 0.330604 ATGTGCCAGAGCCATGAGTT 59.669 50.000 0.00 0.00 38.69 3.01
5374 5941 0.393944 CATGTGCCAGAGCCATGAGT 60.394 55.000 0.00 0.00 44.14 3.41
5375 5942 1.101635 CCATGTGCCAGAGCCATGAG 61.102 60.000 14.22 5.17 44.14 2.90
5376 5943 1.077285 CCATGTGCCAGAGCCATGA 60.077 57.895 14.22 0.00 44.14 3.07
5377 5944 0.467474 ATCCATGTGCCAGAGCCATG 60.467 55.000 8.59 8.59 42.54 3.66
5378 5945 1.073444 CTATCCATGTGCCAGAGCCAT 59.927 52.381 0.00 0.00 38.69 4.40
5379 5946 0.471191 CTATCCATGTGCCAGAGCCA 59.529 55.000 0.00 0.00 38.69 4.75
5380 5947 0.888285 GCTATCCATGTGCCAGAGCC 60.888 60.000 0.00 0.00 38.69 4.70
5381 5948 0.179037 TGCTATCCATGTGCCAGAGC 60.179 55.000 0.00 0.00 40.48 4.09
5382 5949 2.219458 CTTGCTATCCATGTGCCAGAG 58.781 52.381 0.00 0.00 0.00 3.35
5383 5950 1.748244 GCTTGCTATCCATGTGCCAGA 60.748 52.381 0.00 0.00 0.00 3.86
5384 5951 0.666913 GCTTGCTATCCATGTGCCAG 59.333 55.000 0.00 0.00 0.00 4.85
5385 5952 0.256752 AGCTTGCTATCCATGTGCCA 59.743 50.000 0.00 0.00 0.00 4.92
5386 5953 1.336125 GAAGCTTGCTATCCATGTGCC 59.664 52.381 2.10 0.00 0.00 5.01
5387 5954 1.336125 GGAAGCTTGCTATCCATGTGC 59.664 52.381 11.19 0.00 33.30 4.57
5388 5955 2.357009 GTGGAAGCTTGCTATCCATGTG 59.643 50.000 19.34 0.00 44.55 3.21
5389 5956 2.648059 GTGGAAGCTTGCTATCCATGT 58.352 47.619 19.34 0.00 44.55 3.21
5390 5957 1.600957 CGTGGAAGCTTGCTATCCATG 59.399 52.381 19.34 20.51 44.55 3.66
5391 5958 1.959042 CGTGGAAGCTTGCTATCCAT 58.041 50.000 19.34 0.00 44.55 3.41
5392 5959 0.744414 GCGTGGAAGCTTGCTATCCA 60.744 55.000 19.34 9.80 40.84 3.41
5393 5960 0.744414 TGCGTGGAAGCTTGCTATCC 60.744 55.000 19.34 6.99 38.13 2.59
5394 5961 0.375106 GTGCGTGGAAGCTTGCTATC 59.625 55.000 19.34 8.59 38.13 2.08
5395 5962 1.026718 GGTGCGTGGAAGCTTGCTAT 61.027 55.000 19.34 0.00 38.13 2.97
5396 5963 1.671054 GGTGCGTGGAAGCTTGCTA 60.671 57.895 19.34 2.82 38.13 3.49
5397 5964 2.980233 GGTGCGTGGAAGCTTGCT 60.980 61.111 19.34 0.00 38.13 3.91
5398 5965 4.043200 GGGTGCGTGGAAGCTTGC 62.043 66.667 11.58 11.58 38.13 4.01
5399 5966 3.365265 GGGGTGCGTGGAAGCTTG 61.365 66.667 2.10 0.00 38.13 4.01
5400 5967 3.570212 AGGGGTGCGTGGAAGCTT 61.570 61.111 0.00 0.00 38.13 3.74
5401 5968 4.335647 CAGGGGTGCGTGGAAGCT 62.336 66.667 0.00 0.00 38.13 3.74
5402 5969 4.643387 ACAGGGGTGCGTGGAAGC 62.643 66.667 0.00 0.00 37.71 3.86
5403 5970 2.358737 GACAGGGGTGCGTGGAAG 60.359 66.667 0.00 0.00 0.00 3.46
5404 5971 3.948719 GGACAGGGGTGCGTGGAA 61.949 66.667 0.00 0.00 0.00 3.53
5406 5973 2.593468 CTATGGACAGGGGTGCGTGG 62.593 65.000 0.00 0.00 38.35 4.94
5407 5974 1.153369 CTATGGACAGGGGTGCGTG 60.153 63.158 0.00 0.00 38.35 5.34
5408 5975 3.031417 GCTATGGACAGGGGTGCGT 62.031 63.158 0.00 0.00 38.35 5.24
5409 5976 1.399744 TAGCTATGGACAGGGGTGCG 61.400 60.000 0.00 0.00 38.35 5.34
5410 5977 0.394565 CTAGCTATGGACAGGGGTGC 59.605 60.000 0.00 0.00 35.66 5.01
5411 5978 0.394565 GCTAGCTATGGACAGGGGTG 59.605 60.000 7.70 0.00 0.00 4.61
5412 5979 0.266152 AGCTAGCTATGGACAGGGGT 59.734 55.000 17.69 0.00 0.00 4.95
5413 5980 0.972883 GAGCTAGCTATGGACAGGGG 59.027 60.000 19.38 0.00 0.00 4.79
5414 5981 2.008242 AGAGCTAGCTATGGACAGGG 57.992 55.000 19.38 0.00 0.00 4.45
5415 5982 3.494048 CCAAAGAGCTAGCTATGGACAGG 60.494 52.174 27.69 15.84 30.53 4.00
5416 5983 3.133721 ACCAAAGAGCTAGCTATGGACAG 59.866 47.826 33.71 17.94 32.26 3.51
5417 5984 3.107601 ACCAAAGAGCTAGCTATGGACA 58.892 45.455 33.71 0.00 32.26 4.02
5418 5985 3.133003 TCACCAAAGAGCTAGCTATGGAC 59.867 47.826 33.71 18.05 32.26 4.02
5419 5986 3.374764 TCACCAAAGAGCTAGCTATGGA 58.625 45.455 33.71 19.25 32.26 3.41
5420 5987 3.827008 TCACCAAAGAGCTAGCTATGG 57.173 47.619 28.91 28.91 33.36 2.74
5421 5988 6.095432 AGTATCACCAAAGAGCTAGCTATG 57.905 41.667 19.38 16.41 0.00 2.23
5422 5989 5.835819 TGAGTATCACCAAAGAGCTAGCTAT 59.164 40.000 19.38 12.73 42.56 2.97
5423 5990 5.201243 TGAGTATCACCAAAGAGCTAGCTA 58.799 41.667 19.38 0.00 42.56 3.32
5424 5991 4.026744 TGAGTATCACCAAAGAGCTAGCT 58.973 43.478 19.45 19.45 42.56 3.32
5425 5992 4.392921 TGAGTATCACCAAAGAGCTAGC 57.607 45.455 6.62 6.62 42.56 3.42
5439 6006 8.814038 AAGGATGGGCAATATATTTGAGTATC 57.186 34.615 0.00 0.00 0.00 2.24
5440 6007 8.618385 AGAAGGATGGGCAATATATTTGAGTAT 58.382 33.333 0.00 0.00 0.00 2.12
5441 6008 7.988937 AGAAGGATGGGCAATATATTTGAGTA 58.011 34.615 0.00 0.00 0.00 2.59
5442 6009 6.856757 AGAAGGATGGGCAATATATTTGAGT 58.143 36.000 0.00 0.00 0.00 3.41
5443 6010 6.376581 GGAGAAGGATGGGCAATATATTTGAG 59.623 42.308 0.00 0.00 0.00 3.02
5444 6011 6.183361 TGGAGAAGGATGGGCAATATATTTGA 60.183 38.462 0.00 0.00 0.00 2.69
5445 6012 6.012113 TGGAGAAGGATGGGCAATATATTTG 58.988 40.000 0.00 0.00 0.00 2.32
5577 6233 6.072673 GGCTTGACTAATGGGGTTATTTATCG 60.073 42.308 0.00 0.00 0.00 2.92
5682 6338 2.034124 AGCTGCAATGTTTTGGACACT 58.966 42.857 1.02 0.00 42.04 3.55
5750 6406 0.890996 AAGAAAGCAGGCTGGGAACG 60.891 55.000 17.64 0.00 0.00 3.95
5782 6438 2.028385 CACAGTGGAGTTGGGTAGGTAC 60.028 54.545 0.00 0.00 0.00 3.34
5911 6569 2.433970 TGGATCGGTGACTATCATTGCA 59.566 45.455 0.00 0.00 34.35 4.08
5971 6629 2.101249 TCTTATGGTTAGTTACGCGGGG 59.899 50.000 12.47 0.00 0.00 5.73
6093 6988 2.647299 TGTGGATGCTAGGGGAAAAAGA 59.353 45.455 0.00 0.00 0.00 2.52
6239 7141 7.501892 ACCTTACATTTGGCAAAAATGTCAATT 59.498 29.630 24.70 11.58 44.83 2.32
6303 7205 8.888579 TTAAATCCAAGCGAAAATGGTTTAAA 57.111 26.923 0.00 0.00 37.94 1.52
6371 7287 5.126545 AGACATGGCTCTTACGTACACAATA 59.873 40.000 0.00 0.00 0.00 1.90
6446 7362 3.945285 TGTTCACTTGTTTCTCCACCTTC 59.055 43.478 0.00 0.00 0.00 3.46
6742 7742 3.519913 GGAGGGTTGTGACTAGGAGAAAT 59.480 47.826 0.00 0.00 0.00 2.17
6743 7743 2.904434 GGAGGGTTGTGACTAGGAGAAA 59.096 50.000 0.00 0.00 0.00 2.52
6744 7744 2.158219 TGGAGGGTTGTGACTAGGAGAA 60.158 50.000 0.00 0.00 0.00 2.87
6745 7745 1.431633 TGGAGGGTTGTGACTAGGAGA 59.568 52.381 0.00 0.00 0.00 3.71
7003 8006 5.734720 TGTTGTTCCTATTTAGCCTCTCAG 58.265 41.667 0.00 0.00 0.00 3.35
7064 8067 4.953940 TGCAGGTCATTTTAGCCTTTTT 57.046 36.364 0.00 0.00 0.00 1.94
7080 8083 2.148446 TCCCTGATCCAAAATGCAGG 57.852 50.000 0.00 0.00 45.81 4.85
7081 8084 3.094572 ACTTCCCTGATCCAAAATGCAG 58.905 45.455 0.00 0.00 0.00 4.41
7095 8098 7.770366 ACGGAAAATTATTGTTTACTTCCCT 57.230 32.000 0.00 0.00 0.00 4.20
7167 8170 3.452264 AGCTGGAGTTGCACATATAGTCA 59.548 43.478 0.00 0.00 0.00 3.41
7432 8467 2.838202 CAGCTACCTAAACCCTTCAGGA 59.162 50.000 0.00 0.00 39.89 3.86
7506 8541 0.250510 GCCCTCCAATAGGTAGCTGC 60.251 60.000 4.27 0.00 44.90 5.25
7747 8784 8.495949 AGAAAATACACAAGACAATAACACTCG 58.504 33.333 0.00 0.00 0.00 4.18
7888 8928 4.347876 TCACCAGATACATCCCCAATACTG 59.652 45.833 0.00 0.00 0.00 2.74
7999 9041 9.949174 TTATGACAACATACATTGATGTTATGC 57.051 29.630 1.46 7.15 46.02 3.14
8038 9080 5.731599 ATCTCGAGCAATGTTCTGAATTC 57.268 39.130 7.81 0.00 0.00 2.17
8044 9086 6.801539 TTTTTGTATCTCGAGCAATGTTCT 57.198 33.333 7.81 0.00 0.00 3.01
8045 9087 7.217070 GTCATTTTTGTATCTCGAGCAATGTTC 59.783 37.037 7.81 0.00 0.00 3.18
8115 9157 8.575454 CAAAAACTTATAATACGCAAGCTCAAC 58.425 33.333 0.00 0.00 45.62 3.18
8116 9158 8.508062 TCAAAAACTTATAATACGCAAGCTCAA 58.492 29.630 0.00 0.00 45.62 3.02
8138 9180 5.825679 AGCGTACCAGCCATTAATATTCAAA 59.174 36.000 0.00 0.00 38.01 2.69
8148 9190 2.483014 TAACAAGCGTACCAGCCATT 57.517 45.000 0.00 0.00 38.01 3.16
8204 9246 4.272018 CACTGTCAAATCTATGCAGCTACC 59.728 45.833 0.00 0.00 31.75 3.18
8240 9282 1.388547 TGGAGCGCAAAATATGGACC 58.611 50.000 11.47 0.00 0.00 4.46
8325 9367 1.815840 GCTAAGTTGGAGGAGCCGC 60.816 63.158 0.00 0.00 40.66 6.53
8400 9442 3.160269 CCATCCTCTTTGGTTCAGCTTT 58.840 45.455 0.00 0.00 37.07 3.51
8418 9460 1.550072 CGGTTTGCTGGAAAATCCCAT 59.450 47.619 0.00 0.00 35.03 4.00
8424 9466 2.370349 TGAAGTCGGTTTGCTGGAAAA 58.630 42.857 0.00 0.00 0.00 2.29
8465 9507 0.387622 CGGCTGTGGAAATTGCACTG 60.388 55.000 17.98 17.67 39.59 3.66
8486 9528 5.751586 TGGGATCACAAAAGTTAGGGTATC 58.248 41.667 0.00 0.00 0.00 2.24
8508 9550 3.643792 ACCTAACCATCTAAGCTAGCCTG 59.356 47.826 12.13 1.72 0.00 4.85
8518 9560 3.370103 CCCGCAAAGAACCTAACCATCTA 60.370 47.826 0.00 0.00 0.00 1.98
8568 9610 2.947448 AATTCAGGAAAATGCGAGCC 57.053 45.000 0.00 0.00 0.00 4.70
8593 9635 4.058124 TCACTGAATGAACAGAAAGTCCG 58.942 43.478 0.00 0.00 40.63 4.79
8602 9644 3.897505 TGTCTCCTCTCACTGAATGAACA 59.102 43.478 0.00 0.00 36.69 3.18
8610 9652 2.182827 TGGGAATGTCTCCTCTCACTG 58.817 52.381 0.00 0.00 44.68 3.66
8618 9660 5.010933 TCTATAGTCGATGGGAATGTCTCC 58.989 45.833 0.00 0.00 44.54 3.71
8621 9663 4.381079 GCCTCTATAGTCGATGGGAATGTC 60.381 50.000 0.00 0.00 0.00 3.06
8630 9672 2.809119 CACAGACGCCTCTATAGTCGAT 59.191 50.000 14.94 4.65 39.65 3.59
8632 9674 2.210961 TCACAGACGCCTCTATAGTCG 58.789 52.381 0.00 5.15 39.65 4.18
8644 9686 4.564372 AGATTGACGAAATCATCACAGACG 59.436 41.667 14.85 0.00 46.21 4.18
8647 9689 6.312180 TCTTGAGATTGACGAAATCATCACAG 59.688 38.462 14.85 13.30 46.21 3.66
8653 9695 6.820152 ACATCATCTTGAGATTGACGAAATCA 59.180 34.615 14.85 0.00 46.21 2.57
8656 9698 5.934043 ACACATCATCTTGAGATTGACGAAA 59.066 36.000 0.00 0.00 31.21 3.46
8660 9702 4.269603 CCGACACATCATCTTGAGATTGAC 59.730 45.833 0.90 0.00 31.21 3.18
8666 9708 2.306341 AGCCGACACATCATCTTGAG 57.694 50.000 0.00 0.00 0.00 3.02
8673 9715 2.447443 AGAGACTAAGCCGACACATCA 58.553 47.619 0.00 0.00 0.00 3.07
8681 9723 2.611518 CACCTTCAAGAGACTAAGCCG 58.388 52.381 0.00 0.00 0.00 5.52
8705 9747 3.822735 GTGCATGCACATTCTACCCATAT 59.177 43.478 39.12 0.00 45.53 1.78
8726 9768 5.934402 AAATACTCACCCTATGAACGAGT 57.066 39.130 0.00 0.00 40.03 4.18
8727 9769 6.214399 GGTAAATACTCACCCTATGAACGAG 58.786 44.000 0.00 0.00 36.69 4.18
8750 9883 2.979678 ACTTATAGGTGGCATAGGTGGG 59.020 50.000 0.00 0.00 0.00 4.61
8783 9916 3.132160 CACTCGCTCGAGGAATAGACTA 58.868 50.000 21.34 0.00 45.88 2.59
8820 9953 0.028505 CTGGCCGCTCATTTCATTCG 59.971 55.000 0.00 0.00 0.00 3.34
8821 9954 0.383231 CCTGGCCGCTCATTTCATTC 59.617 55.000 0.00 0.00 0.00 2.67
8837 9970 1.283029 TGGGAATGAAAGGCTCTCCTG 59.717 52.381 0.00 0.00 43.40 3.86
8849 9982 2.654385 ACAAGGGGATTTCTGGGAATGA 59.346 45.455 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.