AutoCloner

Multiple sequence alignment - TraesCS3D01G229300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G229300	chr3D	100.000	2669	0	0	1	2669	312713540	312710872	0.000000e+00	4929.0
1	TraesCS3D01G229300	chr3A	97.716	788	17	1	1684	2470	507100807	507100020	0.000000e+00	1354.0
2	TraesCS3D01G229300	chr3A	93.532	804	38	7	871	1669	419830958	419831752	0.000000e+00	1184.0
3	TraesCS3D01G229300	chr3A	95.149	268	13	0	603	870	419830647	419830914	8.830000e-115	424.0
4	TraesCS3D01G229300	chr3A	90.625	128	7	3	2467	2593	419833222	419833345	5.910000e-37	165.0
5	TraesCS3D01G229300	chr6A	97.081	788	20	2	1684	2470	129350561	129351346	0.000000e+00	1325.0
6	TraesCS3D01G229300	chr6A	95.449	791	35	1	1684	2473	111039	110249	0.000000e+00	1260.0
7	TraesCS3D01G229300	chr7A	96.574	788	26	1	1684	2470	30215178	30214391	0.000000e+00	1304.0
8	TraesCS3D01G229300	chr7A	83.264	478	66	13	1	468	492422918	492423391	6.830000e-116	427.0
9	TraesCS3D01G229300	chr7A	84.328	402	52	10	1	393	690405511	690405112	1.500000e-102	383.0
10	TraesCS3D01G229300	chr1A	96.447	788	27	1	1684	2470	316899885	316900672	0.000000e+00	1299.0
11	TraesCS3D01G229300	chr1A	97.279	441	11	1	158	598	568340198	568340637	0.000000e+00	747.0
12	TraesCS3D01G229300	chr1A	96.818	440	12	2	158	596	228086731	228086293	0.000000e+00	734.0
13	TraesCS3D01G229300	chr1A	79.057	530	69	21	6	531	563756872	563757363	2.560000e-85	326.0
14	TraesCS3D01G229300	chr1A	97.688	173	2	1	1	171	568339847	568340019	2.010000e-76	296.0
15	TraesCS3D01G229300	chr1A	96.023	176	5	1	1	174	228087071	228086896	4.350000e-73	285.0
16	TraesCS3D01G229300	chr3B	96.066	788	30	1	1684	2470	772136849	772136062	0.000000e+00	1282.0
17	TraesCS3D01G229300	chr3B	95.558	788	34	1	1684	2470	473752297	473751510	0.000000e+00	1260.0
18	TraesCS3D01G229300	chr3B	93.931	725	31	7	596	1313	407471007	407471725	0.000000e+00	1083.0
19	TraesCS3D01G229300	chr3B	94.503	382	15	3	1311	1686	407471791	407472172	3.830000e-163	584.0
20	TraesCS3D01G229300	chr3B	92.969	128	6	2	2467	2593	407472170	407472295	1.630000e-42	183.0
21	TraesCS3D01G229300	chr2B	96.066	788	30	1	1684	2470	450661051	450661838	0.000000e+00	1282.0
22	TraesCS3D01G229300	chr2B	82.657	542	78	13	2	531	72977388	72976851	1.450000e-127	466.0
23	TraesCS3D01G229300	chr1B	95.305	788	36	1	1684	2470	269300759	269299972	0.000000e+00	1249.0
24	TraesCS3D01G229300	chr2A	97.671	601	8	3	1	596	632614241	632613642	0.000000e+00	1027.0
25	TraesCS3D01G229300	chr2A	80.992	363	55	11	1	352	753529588	753529947	2.620000e-70	276.0
26	TraesCS3D01G229300	chr5A	96.173	601	17	3	1	596	415591439	415592038	0.000000e+00	977.0
27	TraesCS3D01G229300	chr6B	78.261	529	62	23	6	531	502723178	502723656	9.350000e-75	291.0
28	TraesCS3D01G229300	chr6B	96.875	32	1	0	566	597	127741439	127741470	1.000000e-03	54.7
29	TraesCS3D01G229300	chr4B	100.000	30	0	0	569	598	564153175	564153146	3.710000e-04	56.5
30	TraesCS3D01G229300	chr4A	100.000	28	0	0	569	596	11701369	11701342	5.000000e-03	52.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G229300	chr3D	312710872	312713540	2668	True	4929.000000	4929	100.0000	1	2669	1	chr3D.!!$R1	2668
1	TraesCS3D01G229300	chr3A	507100020	507100807	787	True	1354.000000	1354	97.7160	1684	2470	1	chr3A.!!$R1	786
2	TraesCS3D01G229300	chr3A	419830647	419833345	2698	False	591.000000	1184	93.1020	603	2593	3	chr3A.!!$F1	1990
3	TraesCS3D01G229300	chr6A	129350561	129351346	785	False	1325.000000	1325	97.0810	1684	2470	1	chr6A.!!$F1	786
4	TraesCS3D01G229300	chr6A	110249	111039	790	True	1260.000000	1260	95.4490	1684	2473	1	chr6A.!!$R1	789
5	TraesCS3D01G229300	chr7A	30214391	30215178	787	True	1304.000000	1304	96.5740	1684	2470	1	chr7A.!!$R1	786
6	TraesCS3D01G229300	chr1A	316899885	316900672	787	False	1299.000000	1299	96.4470	1684	2470	1	chr1A.!!$F1	786
7	TraesCS3D01G229300	chr1A	568339847	568340637	790	False	521.500000	747	97.4835	1	598	2	chr1A.!!$F3	597
8	TraesCS3D01G229300	chr1A	228086293	228087071	778	True	509.500000	734	96.4205	1	596	2	chr1A.!!$R1	595
9	TraesCS3D01G229300	chr3B	772136062	772136849	787	True	1282.000000	1282	96.0660	1684	2470	1	chr3B.!!$R2	786
10	TraesCS3D01G229300	chr3B	473751510	473752297	787	True	1260.000000	1260	95.5580	1684	2470	1	chr3B.!!$R1	786
11	TraesCS3D01G229300	chr3B	407471007	407472295	1288	False	616.666667	1083	93.8010	596	2593	3	chr3B.!!$F1	1997
12	TraesCS3D01G229300	chr2B	450661051	450661838	787	False	1282.000000	1282	96.0660	1684	2470	1	chr2B.!!$F1	786
13	TraesCS3D01G229300	chr2B	72976851	72977388	537	True	466.000000	466	82.6570	2	531	1	chr2B.!!$R1	529
14	TraesCS3D01G229300	chr1B	269299972	269300759	787	True	1249.000000	1249	95.3050	1684	2470	1	chr1B.!!$R1	786
15	TraesCS3D01G229300	chr2A	632613642	632614241	599	True	1027.000000	1027	97.6710	1	596	1	chr2A.!!$R1	595
16	TraesCS3D01G229300	chr5A	415591439	415592038	599	False	977.000000	977	96.1730	1	596	1	chr5A.!!$F1	595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
839	1051	0.03563	ACAGCTGGTTCTGATGCTCC	60.036	55.0	19.93	0.0	37.51	4.7	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2598	4394	0.107081	TAACACGGTTGGGTGGTCTG	59.893	55.0	0.0	0.0	42.23	3.51	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
103	104	6.767524	ACAAAAATTGGTGTAGAAGTGTGA	57.232	33.333	0.00	0.00	34.12	3.58
113	114	6.183360	TGGTGTAGAAGTGTGATCTATGGATG	60.183	42.308	0.00	0.00	32.37	3.51
306	509	8.986847	CAGGTTTATCATTCATGTGAGAGATAC	58.013	37.037	0.00	0.00	0.00	2.24
310	513	9.816354	TTTATCATTCATGTGAGAGATACGAAA	57.184	29.630	0.00	0.81	0.00	3.46
710	917	8.091449	TCAAGGCTTGAAAGTTTAAACTCAAAA	58.909	29.630	26.78	13.45	36.59	2.44
720	927	0.315869	AAACTCAAAAGCGACGCACG	60.316	50.000	23.70	7.04	45.66	5.34
736	943	1.302192	ACGTGCAGCCCGTACATTT	60.302	52.632	0.00	0.00	36.65	2.32
737	944	1.134487	CGTGCAGCCCGTACATTTG	59.866	57.895	0.00	0.00	0.00	2.32
738	945	1.573829	CGTGCAGCCCGTACATTTGT	61.574	55.000	0.00	0.00	0.00	2.83
739	946	0.109781	GTGCAGCCCGTACATTTGTG	60.110	55.000	0.00	0.00	0.00	3.33
740	947	1.154035	GCAGCCCGTACATTTGTGC	60.154	57.895	0.00	0.00	0.00	4.57
839	1051	0.035630	ACAGCTGGTTCTGATGCTCC	60.036	55.000	19.93	0.00	37.51	4.70
873	1085	0.469144	TCCCAAAAGCCAGAACCACC	60.469	55.000	0.00	0.00	0.00	4.61
931	1190	6.086765	GCACACATCATACTTAAATTATGCGC	59.913	38.462	0.00	0.00	0.00	6.09
959	1218	2.737783	ACGCGGTCGAAAATCATAAACA	59.262	40.909	12.47	0.00	39.41	2.83
1033	1293	0.036732	TGAGGCGCAACCATTTCTCT	59.963	50.000	10.83	0.00	43.14	3.10
1071	1331	1.067821	CGACTGCATCTTCTACCTCCC	59.932	57.143	0.00	0.00	0.00	4.30
1074	1334	0.687757	TGCATCTTCTACCTCCCGCT	60.688	55.000	0.00	0.00	0.00	5.52
1113	1373	4.001248	TGCCTCGGAAGCATTTGG	57.999	55.556	0.00	0.00	34.69	3.28
1443	1777	2.972021	TCTGAAAGATGGTGAGGTGTCA	59.028	45.455	0.00	0.00	38.67	3.58
1568	1905	3.021695	CTGGCTGTTGTTCATGGATCAT	58.978	45.455	0.00	0.00	0.00	2.45
1583	1920	2.505405	GATCATCCAGATGTGCAGCAT	58.495	47.619	0.00	0.00	41.24	3.79
1657	1997	6.491394	TCGAACTTGTATTGGTTGAACAAAG	58.509	36.000	0.00	0.00	33.05	2.77
1771	3566	5.595952	CCTTGCTATGGAAAAAGCTATCCTT	59.404	40.000	12.73	9.61	39.53	3.36
1814	3609	5.869344	TGCGCATGATACTATCCTATGAAAC	59.131	40.000	5.66	0.00	0.00	2.78
2181	3976	6.873076	TCAAGAATGGTGGATTAAAAATGTGC	59.127	34.615	0.00	0.00	0.00	4.57
2303	4098	2.723143	CACTACGACGATGATGCTCATG	59.277	50.000	0.00	0.00	37.20	3.07
2323	4118	4.657814	TGGCAAAGATAAAAGAGGAGGT	57.342	40.909	0.00	0.00	0.00	3.85
2552	4348	2.180674	GGCACTCCCGAATCCAAAC	58.819	57.895	0.00	0.00	0.00	2.93
2563	4359	4.212636	CCCGAATCCAAACGTACCATAATC	59.787	45.833	0.00	0.00	0.00	1.75
2589	4385	2.841044	AACGTGGTGGACCTCCGT	60.841	61.111	8.06	7.89	42.80	4.69
2593	4389	2.603473	TGGTGGACCTCCGTGGAG	60.603	66.667	9.02	9.02	41.63	3.86
2606	4402	2.203938	TGGAGGGACCAGACCACC	60.204	66.667	0.00	0.00	44.64	4.61
2607	4403	3.009714	GGAGGGACCAGACCACCC	61.010	72.222	0.00	0.00	43.55	4.61
2608	4404	2.203938	GAGGGACCAGACCACCCA	60.204	66.667	0.00	0.00	45.43	4.51
2609	4405	1.846124	GAGGGACCAGACCACCCAA	60.846	63.158	0.00	0.00	45.43	4.12
2610	4406	2.125766	GAGGGACCAGACCACCCAAC	62.126	65.000	0.00	0.00	45.43	3.77
2611	4407	2.434774	GGACCAGACCACCCAACC	59.565	66.667	0.00	0.00	0.00	3.77
2612	4408	2.032071	GACCAGACCACCCAACCG	59.968	66.667	0.00	0.00	0.00	4.44
2613	4409	2.770904	ACCAGACCACCCAACCGT	60.771	61.111	0.00	0.00	0.00	4.83
2614	4410	2.281484	CCAGACCACCCAACCGTG	60.281	66.667	0.00	0.00	0.00	4.94
2615	4411	2.508928	CAGACCACCCAACCGTGT	59.491	61.111	0.00	0.00	31.47	4.49
2616	4412	1.153046	CAGACCACCCAACCGTGTT	60.153	57.895	0.00	0.00	31.47	3.32
2617	4413	0.107081	CAGACCACCCAACCGTGTTA	59.893	55.000	0.00	0.00	31.47	2.41
2618	4414	1.061546	AGACCACCCAACCGTGTTAT	58.938	50.000	0.00	0.00	31.47	1.89
2619	4415	2.027929	CAGACCACCCAACCGTGTTATA	60.028	50.000	0.00	0.00	31.47	0.98
2620	4416	2.841881	AGACCACCCAACCGTGTTATAT	59.158	45.455	0.00	0.00	31.47	0.86
2621	4417	3.264964	AGACCACCCAACCGTGTTATATT	59.735	43.478	0.00	0.00	31.47	1.28
2622	4418	4.011698	GACCACCCAACCGTGTTATATTT	58.988	43.478	0.00	0.00	31.47	1.40
2623	4419	4.409187	ACCACCCAACCGTGTTATATTTT	58.591	39.130	0.00	0.00	31.47	1.82
2624	4420	4.833938	ACCACCCAACCGTGTTATATTTTT	59.166	37.500	0.00	0.00	31.47	1.94
2625	4421	6.008960	ACCACCCAACCGTGTTATATTTTTA	58.991	36.000	0.00	0.00	31.47	1.52
2626	4422	6.492772	ACCACCCAACCGTGTTATATTTTTAA	59.507	34.615	0.00	0.00	31.47	1.52
2627	4423	7.015001	ACCACCCAACCGTGTTATATTTTTAAA	59.985	33.333	0.00	0.00	31.47	1.52
2628	4424	7.871463	CCACCCAACCGTGTTATATTTTTAAAA	59.129	33.333	0.00	0.00	31.47	1.52
2629	4425	8.701540	CACCCAACCGTGTTATATTTTTAAAAC	58.298	33.333	0.00	0.00	0.00	2.43
2630	4426	8.419442	ACCCAACCGTGTTATATTTTTAAAACA	58.581	29.630	0.00	0.00	0.00	2.83
2631	4427	9.257651	CCCAACCGTGTTATATTTTTAAAACAA	57.742	29.630	0.00	0.00	33.92	2.83
2645	4441	8.950403	TTTTTAAAACAAATTTGAACAACCCG	57.050	26.923	24.64	0.00	32.27	5.28
2646	4442	7.900782	TTTAAAACAAATTTGAACAACCCGA	57.099	28.000	24.64	0.00	32.27	5.14
2647	4443	7.900782	TTAAAACAAATTTGAACAACCCGAA	57.099	28.000	24.64	3.64	32.27	4.30
2648	4444	6.993786	AAAACAAATTTGAACAACCCGAAT	57.006	29.167	24.64	0.00	0.00	3.34
2649	4445	5.982465	AACAAATTTGAACAACCCGAATG	57.018	34.783	24.64	0.00	0.00	2.67
2650	4446	5.269505	ACAAATTTGAACAACCCGAATGA	57.730	34.783	24.64	0.00	0.00	2.57
2651	4447	5.852827	ACAAATTTGAACAACCCGAATGAT	58.147	33.333	24.64	0.00	0.00	2.45
2652	4448	6.287525	ACAAATTTGAACAACCCGAATGATT	58.712	32.000	24.64	0.00	0.00	2.57
2653	4449	6.765512	ACAAATTTGAACAACCCGAATGATTT	59.234	30.769	24.64	0.00	0.00	2.17
2654	4450	7.281999	ACAAATTTGAACAACCCGAATGATTTT	59.718	29.630	24.64	0.00	0.00	1.82
2655	4451	7.420184	AATTTGAACAACCCGAATGATTTTC	57.580	32.000	0.00	0.00	0.00	2.29
2656	4452	5.521906	TTGAACAACCCGAATGATTTTCA	57.478	34.783	0.00	0.00	0.00	2.69
2657	4453	5.720371	TGAACAACCCGAATGATTTTCAT	57.280	34.783	0.00	0.00	39.09	2.57
2659	4455	6.520272	TGAACAACCCGAATGATTTTCATTT	58.480	32.000	4.37	0.00	46.20	2.32
2660	4456	7.661968	TGAACAACCCGAATGATTTTCATTTA	58.338	30.769	4.37	0.00	46.20	1.40
2661	4457	8.144478	TGAACAACCCGAATGATTTTCATTTAA	58.856	29.630	4.37	0.00	46.20	1.52
2662	4458	8.894768	AACAACCCGAATGATTTTCATTTAAA	57.105	26.923	4.37	0.00	46.20	1.52
2663	4459	8.305441	ACAACCCGAATGATTTTCATTTAAAC	57.695	30.769	4.37	0.00	46.20	2.01
2664	4460	7.386573	ACAACCCGAATGATTTTCATTTAAACC	59.613	33.333	4.37	0.00	46.20	3.27
2665	4461	6.096695	ACCCGAATGATTTTCATTTAAACCG	58.903	36.000	4.37	3.54	46.20	4.44
2666	4462	5.518487	CCCGAATGATTTTCATTTAAACCGG	59.482	40.000	15.11	15.11	46.20	5.28
2667	4463	6.326375	CCGAATGATTTTCATTTAAACCGGA	58.674	36.000	9.46	0.00	46.20	5.14
2668	4464	6.252655	CCGAATGATTTTCATTTAAACCGGAC	59.747	38.462	9.46	0.00	46.20	4.79

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
103	104	6.533730	TCGACAAAATAAGGCATCCATAGAT	58.466	36.000	0.00	0.00	0.00	1.98
113	114	5.803020	AGTCTGAATCGACAAAATAAGGC	57.197	39.130	0.00	0.00	36.38	4.35
306	509	8.531530	CACCTTTTACTTTTGTTTCATCTTTCG	58.468	33.333	0.00	0.00	0.00	3.46
414	619	9.835389	AAATTGTATTATTTGCAGGCAATACAT	57.165	25.926	20.49	6.87	41.19	2.29
720	927	0.109781	CACAAATGTACGGGCTGCAC	60.110	55.000	0.50	0.00	0.00	4.57
727	934	0.109781	GGCACAGCACAAATGTACGG	60.110	55.000	0.00	0.00	0.00	4.02
736	943	4.760530	AAGATAGATTAGGCACAGCACA	57.239	40.909	0.00	0.00	0.00	4.57
737	944	5.118990	TGAAAGATAGATTAGGCACAGCAC	58.881	41.667	0.00	0.00	0.00	4.40
738	945	5.357742	TGAAAGATAGATTAGGCACAGCA	57.642	39.130	0.00	0.00	0.00	4.41
739	946	5.994054	TCATGAAAGATAGATTAGGCACAGC	59.006	40.000	0.00	0.00	0.00	4.40
740	947	8.618702	AATCATGAAAGATAGATTAGGCACAG	57.381	34.615	0.00	0.00	0.00	3.66
777	989	3.426787	TGGCATTTTTCCTCTTCCGTA	57.573	42.857	0.00	0.00	0.00	4.02
839	1051	5.539582	TTTTGGGAAGATCGAACATAACG	57.460	39.130	0.00	0.00	0.00	3.18
873	1085	7.249147	ACACAGTACTAGCAATAAACTACTCG	58.751	38.462	0.00	0.00	0.00	4.18
931	1190	3.000825	TGATTTTCGACCGCGTAATGATG	59.999	43.478	4.92	0.00	38.98	3.07
1033	1293	2.296471	GTCGAGGAAGAGGACAACAGAA	59.704	50.000	0.00	0.00	0.00	3.02
1301	1567	0.970937	CCCTCAGCGTCACCTTCCTA	60.971	60.000	0.00	0.00	0.00	2.94
1443	1777	3.694072	CAGAACAGAAGAGAGGATCGACT	59.306	47.826	0.00	0.00	42.67	4.18
1547	1884	2.439409	TGATCCATGAACAACAGCCAG	58.561	47.619	0.00	0.00	0.00	4.85
1657	1997	2.094906	TGCAAAGCTCATCAAGTGCATC	60.095	45.455	0.00	0.00	37.09	3.91
1771	3566	3.612423	CGCATCATTGTCGAGAGTAACAA	59.388	43.478	0.00	0.00	39.52	2.83
2181	3976	1.747924	TCTCTGATCTCCACGCTCAAG	59.252	52.381	0.00	0.00	0.00	3.02
2303	4098	3.948473	GGACCTCCTCTTTTATCTTTGCC	59.052	47.826	0.00	0.00	0.00	4.52
2306	4101	6.899892	AGATGGACCTCCTCTTTTATCTTT	57.100	37.500	0.00	0.00	36.82	2.52
2343	4138	1.064003	ATACTCAAGTGGGTGGCACA	58.936	50.000	20.82	0.00	0.00	4.57
2552	4348	1.002142	TGGAGACGCGATTATGGTACG	60.002	52.381	15.93	0.00	0.00	3.67
2589	4385	2.203938	GGTGGTCTGGTCCCTCCA	60.204	66.667	0.00	0.00	45.01	3.86
2593	4389	2.434774	GTTGGGTGGTCTGGTCCC	59.565	66.667	0.00	0.00	41.41	4.46
2594	4390	2.434774	GGTTGGGTGGTCTGGTCC	59.565	66.667	0.00	0.00	0.00	4.46
2595	4391	2.032071	CGGTTGGGTGGTCTGGTC	59.968	66.667	0.00	0.00	0.00	4.02
2596	4392	2.770904	ACGGTTGGGTGGTCTGGT	60.771	61.111	0.00	0.00	0.00	4.00
2597	4393	2.281484	CACGGTTGGGTGGTCTGG	60.281	66.667	0.00	0.00	34.27	3.86
2598	4394	0.107081	TAACACGGTTGGGTGGTCTG	59.893	55.000	0.00	0.00	42.23	3.51
2599	4395	1.061546	ATAACACGGTTGGGTGGTCT	58.938	50.000	0.00	0.00	42.23	3.85
2600	4396	2.766345	TATAACACGGTTGGGTGGTC	57.234	50.000	0.00	0.00	42.23	4.02
2601	4397	3.724732	AATATAACACGGTTGGGTGGT	57.275	42.857	0.00	0.00	42.23	4.16
2602	4398	5.394224	AAAAATATAACACGGTTGGGTGG	57.606	39.130	0.00	0.00	42.23	4.61
2603	4399	8.701540	GTTTTAAAAATATAACACGGTTGGGTG	58.298	33.333	1.31	0.00	43.54	4.61
2604	4400	8.419442	TGTTTTAAAAATATAACACGGTTGGGT	58.581	29.630	1.31	0.00	0.00	4.51
2605	4401	8.813643	TGTTTTAAAAATATAACACGGTTGGG	57.186	30.769	1.31	0.00	0.00	4.12
2619	4415	9.561270	CGGGTTGTTCAAATTTGTTTTAAAAAT	57.439	25.926	17.47	0.00	0.00	1.82
2620	4416	8.780249	TCGGGTTGTTCAAATTTGTTTTAAAAA	58.220	25.926	17.47	3.79	0.00	1.94
2621	4417	8.319143	TCGGGTTGTTCAAATTTGTTTTAAAA	57.681	26.923	17.47	0.00	0.00	1.52
2622	4418	7.900782	TCGGGTTGTTCAAATTTGTTTTAAA	57.099	28.000	17.47	1.81	0.00	1.52
2623	4419	7.900782	TTCGGGTTGTTCAAATTTGTTTTAA	57.099	28.000	17.47	2.18	0.00	1.52
2624	4420	7.764443	TCATTCGGGTTGTTCAAATTTGTTTTA	59.236	29.630	17.47	0.00	0.00	1.52
2625	4421	6.595716	TCATTCGGGTTGTTCAAATTTGTTTT	59.404	30.769	17.47	0.00	0.00	2.43
2626	4422	6.109359	TCATTCGGGTTGTTCAAATTTGTTT	58.891	32.000	17.47	0.00	0.00	2.83
2627	4423	5.665459	TCATTCGGGTTGTTCAAATTTGTT	58.335	33.333	17.47	0.00	0.00	2.83
2628	4424	5.269505	TCATTCGGGTTGTTCAAATTTGT	57.730	34.783	17.47	0.00	0.00	2.83
2629	4425	6.783892	AATCATTCGGGTTGTTCAAATTTG	57.216	33.333	12.15	12.15	0.00	2.32
2630	4426	7.497249	TGAAAATCATTCGGGTTGTTCAAATTT	59.503	29.630	0.00	0.00	0.00	1.82
2631	4427	6.989169	TGAAAATCATTCGGGTTGTTCAAATT	59.011	30.769	0.00	0.00	0.00	1.82
2632	4428	6.520272	TGAAAATCATTCGGGTTGTTCAAAT	58.480	32.000	0.00	0.00	0.00	2.32
2633	4429	5.907207	TGAAAATCATTCGGGTTGTTCAAA	58.093	33.333	0.00	0.00	0.00	2.69
2634	4430	5.521906	TGAAAATCATTCGGGTTGTTCAA	57.478	34.783	0.00	0.00	0.00	2.69
2635	4431	5.720371	ATGAAAATCATTCGGGTTGTTCA	57.280	34.783	0.00	0.00	32.13	3.18
2636	4432	8.527567	TTAAATGAAAATCATTCGGGTTGTTC	57.472	30.769	6.09	0.00	45.57	3.18
2637	4433	8.769891	GTTTAAATGAAAATCATTCGGGTTGTT	58.230	29.630	6.09	0.00	45.57	2.83
2638	4434	7.386573	GGTTTAAATGAAAATCATTCGGGTTGT	59.613	33.333	6.09	0.00	45.57	3.32
2639	4435	7.411372	CGGTTTAAATGAAAATCATTCGGGTTG	60.411	37.037	6.09	0.00	45.57	3.77
2640	4436	6.588373	CGGTTTAAATGAAAATCATTCGGGTT	59.412	34.615	6.09	0.00	45.57	4.11
2641	4437	6.096695	CGGTTTAAATGAAAATCATTCGGGT	58.903	36.000	6.09	0.00	45.57	5.28
2642	4438	5.518487	CCGGTTTAAATGAAAATCATTCGGG	59.482	40.000	16.31	10.01	45.57	5.14
2643	4439	6.252655	GTCCGGTTTAAATGAAAATCATTCGG	59.747	38.462	17.29	17.29	45.57	4.30
2644	4440	7.204737	GTCCGGTTTAAATGAAAATCATTCG	57.795	36.000	0.00	5.41	45.57	3.34

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.