Multiple sequence alignment - TraesCS3D01G229100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G229100 chr3D 100.000 3732 0 0 1 3732 311871425 311867694 0.000000e+00 6892.0
1 TraesCS3D01G229100 chr3D 94.137 307 17 1 479 784 506037061 506036755 2.030000e-127 466.0
2 TraesCS3D01G229100 chr3A 93.190 2144 76 20 1633 3732 420335009 420337126 0.000000e+00 3086.0
3 TraesCS3D01G229100 chr3A 88.830 761 55 10 800 1532 420333913 420334671 0.000000e+00 907.0
4 TraesCS3D01G229100 chr3A 87.755 294 29 4 191 478 420332956 420333248 1.660000e-88 337.0
5 TraesCS3D01G229100 chr3A 94.340 159 9 0 1 159 420332799 420332957 1.040000e-60 244.0
6 TraesCS3D01G229100 chr3B 90.080 998 57 17 1633 2616 409276979 409277948 0.000000e+00 1256.0
7 TraesCS3D01G229100 chr3B 91.239 662 32 10 894 1532 409275878 409276536 0.000000e+00 878.0
8 TraesCS3D01G229100 chr3B 89.662 503 29 6 3114 3609 409279882 409280368 1.470000e-173 619.0
9 TraesCS3D01G229100 chr3B 88.811 429 35 7 2635 3063 409278026 409278441 7.150000e-142 514.0
10 TraesCS3D01G229100 chr3B 94.444 306 17 0 476 781 191186855 191186550 4.360000e-129 472.0
11 TraesCS3D01G229100 chr3B 94.079 304 18 0 478 781 662525564 662525867 2.630000e-126 462.0
12 TraesCS3D01G229100 chr3B 91.411 326 25 2 456 781 798453145 798453467 9.510000e-121 444.0
13 TraesCS3D01G229100 chr3B 91.837 147 4 2 3594 3732 409280390 409280536 8.180000e-47 198.0
14 TraesCS3D01G229100 chr3B 93.443 61 4 0 791 851 409274062 409274122 1.430000e-14 91.6
15 TraesCS3D01G229100 chr3B 100.000 43 0 0 1587 1629 409276776 409276818 3.090000e-11 80.5
16 TraesCS3D01G229100 chr4B 93.688 301 19 0 481 781 814407 814107 5.680000e-123 451.0
17 TraesCS3D01G229100 chr7B 93.421 304 19 1 479 781 218525646 218525949 2.040000e-122 449.0
18 TraesCS3D01G229100 chr7B 93.421 304 19 1 479 781 728122408 728122711 2.040000e-122 449.0
19 TraesCS3D01G229100 chr7B 83.898 118 19 0 121 238 663400452 663400335 3.050000e-21 113.0
20 TraesCS3D01G229100 chr5B 93.421 304 19 1 479 781 594097709 594098012 2.040000e-122 449.0
21 TraesCS3D01G229100 chr2A 93.421 304 19 1 479 781 434580264 434579961 2.040000e-122 449.0
22 TraesCS3D01G229100 chr7A 76.961 204 41 6 134 333 68838496 68838295 1.100000e-20 111.0
23 TraesCS3D01G229100 chr7A 80.851 94 16 2 146 239 641243381 641243472 5.170000e-09 73.1
24 TraesCS3D01G229100 chr5D 100.000 28 0 0 428 455 490159251 490159278 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G229100 chr3D 311867694 311871425 3731 True 6892.000000 6892 100.000000 1 3732 1 chr3D.!!$R1 3731
1 TraesCS3D01G229100 chr3A 420332799 420337126 4327 False 1143.500000 3086 91.028750 1 3732 4 chr3A.!!$F1 3731
2 TraesCS3D01G229100 chr3B 409274062 409280536 6474 False 519.585714 1256 92.153143 791 3732 7 chr3B.!!$F3 2941

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.031994 CAGGAACCTTGCCAAAACCG 59.968 55.0 0.0 0.0 0.0 4.44 F
679 686 0.032678 CGATATGCCGGCTCAGTCTT 59.967 55.0 29.7 5.1 0.0 3.01 F
1354 3763 0.038526 CTGGTGCGTTCGGTAGTCTT 60.039 55.0 0.0 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1336 3745 0.390124 AAAGACTACCGAACGCACCA 59.610 50.0 0.0 0.0 0.0 4.17 R
1720 4500 0.883833 CCATGAACAGGACACTTGCC 59.116 55.0 0.0 0.0 0.0 4.52 R
2887 5748 0.899717 TGGGTCCTCAAAATGGCAGC 60.900 55.0 0.0 0.0 0.0 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.031994 CAGGAACCTTGCCAAAACCG 59.968 55.000 0.00 0.00 0.00 4.44
76 77 3.096852 GGCCCATTTTACAAGCTTAGGT 58.903 45.455 0.00 0.00 0.00 3.08
107 108 1.396996 GTCGATAATTTGTGGCAGCGT 59.603 47.619 0.00 0.00 0.00 5.07
111 112 2.193865 TAATTTGTGGCAGCGTGCGG 62.194 55.000 0.00 0.00 46.21 5.69
132 133 5.919141 GCGGCAAATAGGTATCCTATATACG 59.081 44.000 8.48 11.15 45.14 3.06
147 148 9.756571 ATCCTATATACGTAAAAGAGTCATCCT 57.243 33.333 0.00 0.00 0.00 3.24
189 190 6.624352 AATATACAAGCATGACACATCACC 57.376 37.500 0.00 0.00 37.79 4.02
190 191 2.275134 ACAAGCATGACACATCACCA 57.725 45.000 0.00 0.00 37.79 4.17
191 192 2.799017 ACAAGCATGACACATCACCAT 58.201 42.857 0.00 0.00 37.79 3.55
192 193 3.954200 ACAAGCATGACACATCACCATA 58.046 40.909 0.00 0.00 37.79 2.74
216 218 7.673641 ATAATTATGGATGGAAAAAGGCACA 57.326 32.000 0.00 0.00 0.00 4.57
230 232 1.897133 AGGCACACATCAACATGCAAT 59.103 42.857 0.00 0.00 39.92 3.56
246 248 5.466819 CATGCAATCATGTATAGGCAAAGG 58.533 41.667 0.00 0.00 43.85 3.11
248 250 3.610114 GCAATCATGTATAGGCAAAGGCG 60.610 47.826 0.00 0.00 42.47 5.52
262 264 0.398696 AAGGCGAACCACCACATGTA 59.601 50.000 0.00 0.00 39.06 2.29
474 481 2.480555 CCGCAACATCGGTCTTGC 59.519 61.111 0.00 0.00 44.18 4.01
475 482 2.324330 CCGCAACATCGGTCTTGCA 61.324 57.895 9.38 0.00 42.50 4.08
476 483 1.573932 CGCAACATCGGTCTTGCAA 59.426 52.632 9.38 0.00 42.50 4.08
477 484 0.040514 CGCAACATCGGTCTTGCAAA 60.041 50.000 9.38 0.00 42.50 3.68
479 486 1.689959 CAACATCGGTCTTGCAAAGC 58.310 50.000 0.00 0.77 45.70 3.51
480 487 0.238289 AACATCGGTCTTGCAAAGCG 59.762 50.000 19.89 19.89 45.70 4.68
481 488 0.602638 ACATCGGTCTTGCAAAGCGA 60.603 50.000 26.05 26.05 45.70 4.93
482 489 0.516877 CATCGGTCTTGCAAAGCGAA 59.483 50.000 26.93 16.83 45.70 4.70
483 490 0.517316 ATCGGTCTTGCAAAGCGAAC 59.483 50.000 26.93 13.77 45.70 3.95
484 491 1.082104 CGGTCTTGCAAAGCGAACC 60.082 57.895 20.76 13.14 45.70 3.62
485 492 1.781025 CGGTCTTGCAAAGCGAACCA 61.781 55.000 20.76 0.00 45.70 3.67
486 493 0.383949 GGTCTTGCAAAGCGAACCAA 59.616 50.000 0.00 0.00 45.70 3.67
487 494 1.477105 GTCTTGCAAAGCGAACCAAC 58.523 50.000 0.00 0.00 45.70 3.77
488 495 1.098869 TCTTGCAAAGCGAACCAACA 58.901 45.000 0.00 0.00 45.70 3.33
489 496 1.680735 TCTTGCAAAGCGAACCAACAT 59.319 42.857 0.00 0.00 45.70 2.71
490 497 1.788308 CTTGCAAAGCGAACCAACATG 59.212 47.619 0.00 0.00 36.98 3.21
491 498 0.743688 TGCAAAGCGAACCAACATGT 59.256 45.000 0.00 0.00 0.00 3.21
492 499 1.130955 GCAAAGCGAACCAACATGTG 58.869 50.000 0.00 0.00 0.00 3.21
506 513 4.380843 AACATGTGGTTGGATGGTTAGA 57.619 40.909 0.00 0.00 38.60 2.10
507 514 3.955471 ACATGTGGTTGGATGGTTAGAG 58.045 45.455 0.00 0.00 0.00 2.43
508 515 2.489938 TGTGGTTGGATGGTTAGAGC 57.510 50.000 0.00 0.00 0.00 4.09
509 516 1.338674 TGTGGTTGGATGGTTAGAGCG 60.339 52.381 0.00 0.00 0.00 5.03
510 517 1.066430 GTGGTTGGATGGTTAGAGCGA 60.066 52.381 0.00 0.00 0.00 4.93
511 518 1.066430 TGGTTGGATGGTTAGAGCGAC 60.066 52.381 0.00 0.00 0.00 5.19
512 519 1.207329 GGTTGGATGGTTAGAGCGACT 59.793 52.381 0.00 0.00 0.00 4.18
513 520 2.271800 GTTGGATGGTTAGAGCGACTG 58.728 52.381 0.00 0.00 0.00 3.51
514 521 1.557099 TGGATGGTTAGAGCGACTGT 58.443 50.000 0.00 0.00 0.00 3.55
515 522 1.204704 TGGATGGTTAGAGCGACTGTG 59.795 52.381 0.00 0.00 0.00 3.66
516 523 1.471676 GGATGGTTAGAGCGACTGTGG 60.472 57.143 0.00 0.00 0.00 4.17
517 524 1.204941 GATGGTTAGAGCGACTGTGGT 59.795 52.381 0.00 0.00 0.00 4.16
518 525 1.913778 TGGTTAGAGCGACTGTGGTA 58.086 50.000 0.00 0.00 0.00 3.25
519 526 2.453521 TGGTTAGAGCGACTGTGGTAT 58.546 47.619 0.00 0.00 0.00 2.73
520 527 2.426024 TGGTTAGAGCGACTGTGGTATC 59.574 50.000 0.00 0.00 0.00 2.24
521 528 2.688958 GGTTAGAGCGACTGTGGTATCT 59.311 50.000 0.00 0.00 0.00 1.98
522 529 3.243134 GGTTAGAGCGACTGTGGTATCTC 60.243 52.174 3.72 0.00 0.00 2.75
523 530 1.394618 AGAGCGACTGTGGTATCTCC 58.605 55.000 0.00 0.00 0.00 3.71
524 531 1.103803 GAGCGACTGTGGTATCTCCA 58.896 55.000 0.00 0.00 45.01 3.86
531 538 4.066614 TGGTATCTCCAGCCCACC 57.933 61.111 0.00 0.00 41.93 4.61
532 539 1.082019 TGGTATCTCCAGCCCACCA 59.918 57.895 0.00 0.00 41.93 4.17
533 540 0.982852 TGGTATCTCCAGCCCACCAG 60.983 60.000 0.00 0.00 41.93 4.00
534 541 1.700042 GGTATCTCCAGCCCACCAGG 61.700 65.000 0.00 0.00 35.73 4.45
550 557 3.363787 AGGGTTCAAATCCTGGTGC 57.636 52.632 0.00 0.00 38.36 5.01
551 558 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
552 559 1.177401 GGGTTCAAATCCTGGTGCTC 58.823 55.000 0.00 0.00 0.00 4.26
553 560 0.804989 GGTTCAAATCCTGGTGCTCG 59.195 55.000 0.00 0.00 0.00 5.03
554 561 0.169009 GTTCAAATCCTGGTGCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
555 562 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
556 563 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
557 564 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
558 565 1.203052 CAAATCCTGGTGCTCGCATTT 59.797 47.619 0.00 0.00 0.00 2.32
559 566 1.549203 AATCCTGGTGCTCGCATTTT 58.451 45.000 0.00 0.00 0.00 1.82
560 567 1.549203 ATCCTGGTGCTCGCATTTTT 58.451 45.000 0.00 0.00 0.00 1.94
588 595 6.862209 TGAATTTATTTCAGGATTTCCGGTG 58.138 36.000 0.00 0.00 39.44 4.94
589 596 6.661377 TGAATTTATTTCAGGATTTCCGGTGA 59.339 34.615 0.00 0.00 39.44 4.02
590 597 7.341769 TGAATTTATTTCAGGATTTCCGGTGAT 59.658 33.333 0.00 0.00 39.44 3.06
591 598 6.449635 TTTATTTCAGGATTTCCGGTGATG 57.550 37.500 0.00 0.00 42.08 3.07
592 599 1.750193 TTCAGGATTTCCGGTGATGC 58.250 50.000 0.00 2.01 42.08 3.91
593 600 0.461870 TCAGGATTTCCGGTGATGCG 60.462 55.000 0.00 0.00 42.08 4.73
594 601 1.819632 AGGATTTCCGGTGATGCGC 60.820 57.895 0.00 0.00 42.08 6.09
595 602 2.112198 GGATTTCCGGTGATGCGCA 61.112 57.895 14.96 14.96 0.00 6.09
596 603 1.447317 GGATTTCCGGTGATGCGCAT 61.447 55.000 25.66 25.66 0.00 4.73
597 604 0.381801 GATTTCCGGTGATGCGCATT 59.618 50.000 26.12 8.31 0.00 3.56
598 605 0.381801 ATTTCCGGTGATGCGCATTC 59.618 50.000 26.12 19.54 0.00 2.67
599 606 0.957888 TTTCCGGTGATGCGCATTCA 60.958 50.000 26.12 19.83 0.00 2.57
600 607 1.368345 TTCCGGTGATGCGCATTCAG 61.368 55.000 26.12 19.44 0.00 3.02
601 608 2.108514 CCGGTGATGCGCATTCAGT 61.109 57.895 26.12 0.98 0.00 3.41
602 609 1.061411 CGGTGATGCGCATTCAGTG 59.939 57.895 26.12 13.82 0.00 3.66
603 610 1.430632 GGTGATGCGCATTCAGTGG 59.569 57.895 26.12 0.00 0.00 4.00
604 611 1.430632 GTGATGCGCATTCAGTGGG 59.569 57.895 26.12 0.00 43.21 4.61
605 612 1.026182 GTGATGCGCATTCAGTGGGA 61.026 55.000 26.12 0.00 43.02 4.37
606 613 0.745486 TGATGCGCATTCAGTGGGAG 60.745 55.000 26.12 0.00 43.02 4.30
607 614 1.442526 GATGCGCATTCAGTGGGAGG 61.443 60.000 26.12 0.00 43.02 4.30
608 615 1.913951 ATGCGCATTCAGTGGGAGGA 61.914 55.000 19.28 0.00 43.02 3.71
609 616 1.817099 GCGCATTCAGTGGGAGGAG 60.817 63.158 0.30 0.00 43.02 3.69
610 617 1.900351 CGCATTCAGTGGGAGGAGA 59.100 57.895 0.00 0.00 43.02 3.71
611 618 0.460987 CGCATTCAGTGGGAGGAGAC 60.461 60.000 0.00 0.00 43.02 3.36
612 619 0.460987 GCATTCAGTGGGAGGAGACG 60.461 60.000 0.00 0.00 0.00 4.18
613 620 0.898320 CATTCAGTGGGAGGAGACGT 59.102 55.000 0.00 0.00 0.00 4.34
614 621 1.276421 CATTCAGTGGGAGGAGACGTT 59.724 52.381 0.00 0.00 0.00 3.99
615 622 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
636 643 2.046988 TCGACGACGAGGTGCCTA 60.047 61.111 5.75 0.00 43.81 3.93
637 644 2.099831 CGACGACGAGGTGCCTAC 59.900 66.667 0.00 0.00 42.66 3.18
638 645 2.099831 GACGACGAGGTGCCTACG 59.900 66.667 0.00 9.22 0.00 3.51
639 646 3.392595 GACGACGAGGTGCCTACGG 62.393 68.421 0.00 1.18 0.00 4.02
640 647 3.437795 CGACGAGGTGCCTACGGT 61.438 66.667 12.22 3.01 0.00 4.83
641 648 2.181021 GACGAGGTGCCTACGGTG 59.819 66.667 12.22 0.00 0.00 4.94
642 649 2.282674 ACGAGGTGCCTACGGTGA 60.283 61.111 12.22 0.00 0.00 4.02
643 650 2.181021 CGAGGTGCCTACGGTGAC 59.819 66.667 0.00 0.00 0.00 3.67
644 651 2.341101 CGAGGTGCCTACGGTGACT 61.341 63.158 0.00 0.00 0.00 3.41
645 652 1.874345 CGAGGTGCCTACGGTGACTT 61.874 60.000 0.00 0.00 0.00 3.01
646 653 0.108756 GAGGTGCCTACGGTGACTTC 60.109 60.000 0.00 0.00 0.00 3.01
647 654 1.445582 GGTGCCTACGGTGACTTCG 60.446 63.158 0.00 0.00 0.00 3.79
648 655 1.288127 GTGCCTACGGTGACTTCGT 59.712 57.895 0.00 0.00 43.64 3.85
649 656 0.523072 GTGCCTACGGTGACTTCGTA 59.477 55.000 0.00 0.00 41.38 3.43
650 657 1.068333 GTGCCTACGGTGACTTCGTAA 60.068 52.381 0.00 0.00 41.62 3.18
651 658 1.612950 TGCCTACGGTGACTTCGTAAA 59.387 47.619 0.00 0.00 41.62 2.01
652 659 2.231964 TGCCTACGGTGACTTCGTAAAT 59.768 45.455 0.00 0.00 41.62 1.40
653 660 3.256558 GCCTACGGTGACTTCGTAAATT 58.743 45.455 0.00 0.00 41.62 1.82
654 661 3.681417 GCCTACGGTGACTTCGTAAATTT 59.319 43.478 0.00 0.00 41.62 1.82
655 662 4.201656 GCCTACGGTGACTTCGTAAATTTC 60.202 45.833 0.00 0.00 41.62 2.17
656 663 4.925054 CCTACGGTGACTTCGTAAATTTCA 59.075 41.667 0.00 0.00 41.62 2.69
657 664 5.406175 CCTACGGTGACTTCGTAAATTTCAA 59.594 40.000 0.00 0.00 41.62 2.69
658 665 5.338614 ACGGTGACTTCGTAAATTTCAAG 57.661 39.130 0.00 0.00 39.22 3.02
659 666 5.051816 ACGGTGACTTCGTAAATTTCAAGA 58.948 37.500 0.00 0.00 39.22 3.02
660 667 5.050567 ACGGTGACTTCGTAAATTTCAAGAC 60.051 40.000 0.00 0.00 39.22 3.01
661 668 5.371629 GGTGACTTCGTAAATTTCAAGACG 58.628 41.667 5.11 5.11 36.66 4.18
662 669 5.176223 GGTGACTTCGTAAATTTCAAGACGA 59.824 40.000 9.29 9.29 42.17 4.20
663 670 6.128634 GGTGACTTCGTAAATTTCAAGACGAT 60.129 38.462 13.11 1.91 43.23 3.73
664 671 7.062605 GGTGACTTCGTAAATTTCAAGACGATA 59.937 37.037 13.11 5.72 43.23 2.92
665 672 8.592998 GTGACTTCGTAAATTTCAAGACGATAT 58.407 33.333 13.11 6.22 43.23 1.63
666 673 8.592155 TGACTTCGTAAATTTCAAGACGATATG 58.408 33.333 13.11 9.76 43.23 1.78
667 674 7.399523 ACTTCGTAAATTTCAAGACGATATGC 58.600 34.615 13.11 0.00 43.23 3.14
668 675 6.281848 TCGTAAATTTCAAGACGATATGCC 57.718 37.500 9.29 0.00 39.25 4.40
669 676 5.051307 TCGTAAATTTCAAGACGATATGCCG 60.051 40.000 9.29 0.00 39.25 5.69
670 677 4.552166 AAATTTCAAGACGATATGCCGG 57.448 40.909 0.00 0.00 0.00 6.13
671 678 1.295792 TTTCAAGACGATATGCCGGC 58.704 50.000 22.73 22.73 37.97 6.13
674 681 3.856309 AGACGATATGCCGGCTCA 58.144 55.556 29.70 15.91 46.40 4.26
675 682 1.662608 AGACGATATGCCGGCTCAG 59.337 57.895 29.70 16.33 46.40 3.35
676 683 1.109920 AGACGATATGCCGGCTCAGT 61.110 55.000 29.70 19.46 46.40 3.41
677 684 0.664767 GACGATATGCCGGCTCAGTC 60.665 60.000 29.70 23.15 34.11 3.51
678 685 1.109920 ACGATATGCCGGCTCAGTCT 61.110 55.000 29.70 6.09 0.00 3.24
679 686 0.032678 CGATATGCCGGCTCAGTCTT 59.967 55.000 29.70 5.10 0.00 3.01
680 687 1.539065 CGATATGCCGGCTCAGTCTTT 60.539 52.381 29.70 3.35 0.00 2.52
681 688 2.139118 GATATGCCGGCTCAGTCTTTC 58.861 52.381 29.70 9.22 0.00 2.62
682 689 0.179111 TATGCCGGCTCAGTCTTTCG 60.179 55.000 29.70 0.00 0.00 3.46
683 690 2.815647 GCCGGCTCAGTCTTTCGG 60.816 66.667 22.15 0.00 43.13 4.30
684 691 2.970639 CCGGCTCAGTCTTTCGGA 59.029 61.111 0.00 0.00 42.94 4.55
685 692 1.153745 CCGGCTCAGTCTTTCGGAG 60.154 63.158 0.00 0.00 42.94 4.63
686 693 1.153745 CGGCTCAGTCTTTCGGAGG 60.154 63.158 0.00 0.00 38.48 4.30
687 694 1.878656 CGGCTCAGTCTTTCGGAGGT 61.879 60.000 0.00 0.00 38.48 3.85
688 695 0.390472 GGCTCAGTCTTTCGGAGGTG 60.390 60.000 0.00 0.00 38.48 4.00
689 696 1.016653 GCTCAGTCTTTCGGAGGTGC 61.017 60.000 0.00 0.00 38.48 5.01
690 697 0.605589 CTCAGTCTTTCGGAGGTGCT 59.394 55.000 0.00 0.00 35.32 4.40
691 698 0.603569 TCAGTCTTTCGGAGGTGCTC 59.396 55.000 0.00 0.00 0.00 4.26
692 699 0.318441 CAGTCTTTCGGAGGTGCTCA 59.682 55.000 0.00 0.00 31.08 4.26
693 700 1.066573 CAGTCTTTCGGAGGTGCTCAT 60.067 52.381 0.00 0.00 31.08 2.90
694 701 2.166459 CAGTCTTTCGGAGGTGCTCATA 59.834 50.000 0.00 0.00 31.08 2.15
695 702 2.832129 AGTCTTTCGGAGGTGCTCATAA 59.168 45.455 0.00 0.00 31.08 1.90
696 703 3.118956 AGTCTTTCGGAGGTGCTCATAAG 60.119 47.826 0.00 0.00 31.08 1.73
697 704 2.168521 TCTTTCGGAGGTGCTCATAAGG 59.831 50.000 0.00 0.00 31.08 2.69
698 705 0.830648 TTCGGAGGTGCTCATAAGGG 59.169 55.000 0.00 0.00 31.08 3.95
699 706 0.325296 TCGGAGGTGCTCATAAGGGT 60.325 55.000 0.00 0.00 31.08 4.34
700 707 1.063492 TCGGAGGTGCTCATAAGGGTA 60.063 52.381 0.00 0.00 31.08 3.69
701 708 1.341531 CGGAGGTGCTCATAAGGGTAG 59.658 57.143 0.00 0.00 31.08 3.18
702 709 1.694696 GGAGGTGCTCATAAGGGTAGG 59.305 57.143 0.00 0.00 31.08 3.18
703 710 1.694696 GAGGTGCTCATAAGGGTAGGG 59.305 57.143 0.00 0.00 0.00 3.53
704 711 1.009675 AGGTGCTCATAAGGGTAGGGT 59.990 52.381 0.00 0.00 0.00 4.34
705 712 2.249214 AGGTGCTCATAAGGGTAGGGTA 59.751 50.000 0.00 0.00 0.00 3.69
706 713 3.116317 AGGTGCTCATAAGGGTAGGGTAT 60.116 47.826 0.00 0.00 0.00 2.73
707 714 3.008049 GGTGCTCATAAGGGTAGGGTATG 59.992 52.174 0.00 0.00 0.00 2.39
708 715 2.637872 TGCTCATAAGGGTAGGGTATGC 59.362 50.000 0.00 0.00 0.00 3.14
709 716 2.353803 GCTCATAAGGGTAGGGTATGCG 60.354 54.545 0.00 0.00 0.00 4.73
710 717 2.897969 CTCATAAGGGTAGGGTATGCGT 59.102 50.000 0.00 0.00 0.00 5.24
711 718 2.631062 TCATAAGGGTAGGGTATGCGTG 59.369 50.000 0.00 0.00 0.00 5.34
712 719 2.163810 TAAGGGTAGGGTATGCGTGT 57.836 50.000 0.00 0.00 0.00 4.49
713 720 2.163810 AAGGGTAGGGTATGCGTGTA 57.836 50.000 0.00 0.00 0.00 2.90
714 721 2.393630 AGGGTAGGGTATGCGTGTAT 57.606 50.000 0.00 0.00 0.00 2.29
715 722 1.968493 AGGGTAGGGTATGCGTGTATG 59.032 52.381 0.00 0.00 0.00 2.39
716 723 1.690352 GGGTAGGGTATGCGTGTATGT 59.310 52.381 0.00 0.00 0.00 2.29
717 724 2.547218 GGGTAGGGTATGCGTGTATGTG 60.547 54.545 0.00 0.00 0.00 3.21
718 725 2.101917 GGTAGGGTATGCGTGTATGTGT 59.898 50.000 0.00 0.00 0.00 3.72
719 726 3.431207 GGTAGGGTATGCGTGTATGTGTT 60.431 47.826 0.00 0.00 0.00 3.32
720 727 2.901249 AGGGTATGCGTGTATGTGTTC 58.099 47.619 0.00 0.00 0.00 3.18
721 728 2.235155 AGGGTATGCGTGTATGTGTTCA 59.765 45.455 0.00 0.00 0.00 3.18
722 729 3.118408 AGGGTATGCGTGTATGTGTTCAT 60.118 43.478 0.00 0.00 38.00 2.57
723 730 4.100344 AGGGTATGCGTGTATGTGTTCATA 59.900 41.667 0.00 0.00 35.70 2.15
724 731 4.447724 GGGTATGCGTGTATGTGTTCATAG 59.552 45.833 0.00 0.00 37.23 2.23
725 732 4.447724 GGTATGCGTGTATGTGTTCATAGG 59.552 45.833 0.00 0.00 37.23 2.57
726 733 2.899976 TGCGTGTATGTGTTCATAGGG 58.100 47.619 0.00 0.00 37.23 3.53
727 734 2.498078 TGCGTGTATGTGTTCATAGGGA 59.502 45.455 0.00 0.00 37.23 4.20
728 735 3.133901 TGCGTGTATGTGTTCATAGGGAT 59.866 43.478 0.00 0.00 37.23 3.85
729 736 3.494626 GCGTGTATGTGTTCATAGGGATG 59.505 47.826 0.00 0.00 37.23 3.51
730 737 4.739436 GCGTGTATGTGTTCATAGGGATGA 60.739 45.833 0.00 0.00 40.45 2.92
731 738 4.984785 CGTGTATGTGTTCATAGGGATGAG 59.015 45.833 0.00 0.00 43.03 2.90
732 739 5.451937 CGTGTATGTGTTCATAGGGATGAGT 60.452 44.000 0.00 0.00 43.03 3.41
733 740 5.755375 GTGTATGTGTTCATAGGGATGAGTG 59.245 44.000 0.00 0.00 43.03 3.51
734 741 5.425217 TGTATGTGTTCATAGGGATGAGTGT 59.575 40.000 0.00 0.00 43.03 3.55
735 742 6.609616 TGTATGTGTTCATAGGGATGAGTGTA 59.390 38.462 0.00 0.00 43.03 2.90
736 743 6.753913 ATGTGTTCATAGGGATGAGTGTAT 57.246 37.500 0.00 0.00 43.03 2.29
737 744 5.917462 TGTGTTCATAGGGATGAGTGTATG 58.083 41.667 0.00 0.00 43.03 2.39
738 745 4.752101 GTGTTCATAGGGATGAGTGTATGC 59.248 45.833 0.00 0.00 43.03 3.14
739 746 3.942130 TCATAGGGATGAGTGTATGCG 57.058 47.619 0.00 0.00 37.15 4.73
740 747 2.029020 TCATAGGGATGAGTGTATGCGC 60.029 50.000 0.00 0.00 37.15 6.09
741 748 1.704641 TAGGGATGAGTGTATGCGCT 58.295 50.000 9.73 0.00 38.31 5.92
742 749 0.833287 AGGGATGAGTGTATGCGCTT 59.167 50.000 9.73 4.59 35.28 4.68
743 750 0.940126 GGGATGAGTGTATGCGCTTG 59.060 55.000 9.73 0.00 35.28 4.01
744 751 1.656652 GGATGAGTGTATGCGCTTGT 58.343 50.000 9.73 0.00 35.28 3.16
745 752 2.483013 GGGATGAGTGTATGCGCTTGTA 60.483 50.000 9.73 0.00 35.28 2.41
746 753 3.393800 GGATGAGTGTATGCGCTTGTAT 58.606 45.455 9.73 0.00 35.28 2.29
747 754 4.556233 GGATGAGTGTATGCGCTTGTATA 58.444 43.478 9.73 0.00 35.28 1.47
748 755 5.171476 GGATGAGTGTATGCGCTTGTATAT 58.829 41.667 9.73 0.00 35.28 0.86
749 756 5.062683 GGATGAGTGTATGCGCTTGTATATG 59.937 44.000 9.73 0.00 35.28 1.78
750 757 5.195001 TGAGTGTATGCGCTTGTATATGA 57.805 39.130 9.73 0.00 35.28 2.15
751 758 5.783111 TGAGTGTATGCGCTTGTATATGAT 58.217 37.500 9.73 0.00 35.28 2.45
752 759 5.863935 TGAGTGTATGCGCTTGTATATGATC 59.136 40.000 9.73 0.00 35.28 2.92
753 760 4.859245 AGTGTATGCGCTTGTATATGATCG 59.141 41.667 9.73 0.00 29.98 3.69
754 761 3.612423 TGTATGCGCTTGTATATGATCGC 59.388 43.478 9.73 0.00 42.47 4.58
755 762 2.438868 TGCGCTTGTATATGATCGCT 57.561 45.000 9.73 0.00 42.58 4.93
756 763 2.754472 TGCGCTTGTATATGATCGCTT 58.246 42.857 9.73 0.00 42.58 4.68
757 764 2.476241 TGCGCTTGTATATGATCGCTTG 59.524 45.455 9.73 0.00 42.58 4.01
758 765 2.476619 GCGCTTGTATATGATCGCTTGT 59.523 45.455 0.00 0.00 39.51 3.16
759 766 3.662713 GCGCTTGTATATGATCGCTTGTG 60.663 47.826 0.00 0.00 39.51 3.33
760 767 3.490896 CGCTTGTATATGATCGCTTGTGT 59.509 43.478 0.00 0.00 0.00 3.72
761 768 4.375405 CGCTTGTATATGATCGCTTGTGTC 60.375 45.833 0.00 0.00 0.00 3.67
762 769 4.747108 GCTTGTATATGATCGCTTGTGTCT 59.253 41.667 0.00 0.00 0.00 3.41
763 770 5.332883 GCTTGTATATGATCGCTTGTGTCTG 60.333 44.000 0.00 0.00 0.00 3.51
764 771 5.262588 TGTATATGATCGCTTGTGTCTGT 57.737 39.130 0.00 0.00 0.00 3.41
765 772 6.385649 TGTATATGATCGCTTGTGTCTGTA 57.614 37.500 0.00 0.00 0.00 2.74
766 773 6.206498 TGTATATGATCGCTTGTGTCTGTAC 58.794 40.000 0.00 0.00 0.00 2.90
767 774 3.876274 ATGATCGCTTGTGTCTGTACT 57.124 42.857 0.00 0.00 0.00 2.73
768 775 4.983671 ATGATCGCTTGTGTCTGTACTA 57.016 40.909 0.00 0.00 0.00 1.82
769 776 4.776795 TGATCGCTTGTGTCTGTACTAA 57.223 40.909 0.00 0.00 0.00 2.24
770 777 5.324784 TGATCGCTTGTGTCTGTACTAAT 57.675 39.130 0.00 0.00 0.00 1.73
771 778 5.102313 TGATCGCTTGTGTCTGTACTAATG 58.898 41.667 0.00 0.00 0.00 1.90
772 779 4.514781 TCGCTTGTGTCTGTACTAATGT 57.485 40.909 0.00 0.00 0.00 2.71
773 780 4.878439 TCGCTTGTGTCTGTACTAATGTT 58.122 39.130 0.00 0.00 0.00 2.71
774 781 6.016213 TCGCTTGTGTCTGTACTAATGTTA 57.984 37.500 0.00 0.00 0.00 2.41
775 782 6.448852 TCGCTTGTGTCTGTACTAATGTTAA 58.551 36.000 0.00 0.00 0.00 2.01
776 783 6.924612 TCGCTTGTGTCTGTACTAATGTTAAA 59.075 34.615 0.00 0.00 0.00 1.52
777 784 7.438757 TCGCTTGTGTCTGTACTAATGTTAAAA 59.561 33.333 0.00 0.00 0.00 1.52
778 785 8.065407 CGCTTGTGTCTGTACTAATGTTAAAAA 58.935 33.333 0.00 0.00 0.00 1.94
822 829 2.777494 CGTGACATAGCAATTGCAGTG 58.223 47.619 30.89 27.32 45.16 3.66
825 832 4.161333 GTGACATAGCAATTGCAGTGTTC 58.839 43.478 29.36 23.55 45.16 3.18
851 1517 1.341089 GGGCCAGCCTAGCTAAACTTT 60.341 52.381 4.39 0.00 36.40 2.66
891 3284 2.216750 CTTCGGCCCAACCATTGCAG 62.217 60.000 0.00 0.00 39.03 4.41
892 3285 4.440127 CGGCCCAACCATTGCAGC 62.440 66.667 0.00 0.00 39.03 5.25
908 3302 1.856802 CAGCAACAAAGCCCAAGTTC 58.143 50.000 0.00 0.00 34.23 3.01
912 3306 2.351418 GCAACAAAGCCCAAGTTCAAAC 59.649 45.455 0.00 0.00 0.00 2.93
939 3335 4.785453 GCCAGAGCCCCCTTCGTG 62.785 72.222 0.00 0.00 0.00 4.35
977 3377 0.249868 CCTTCTCACCTGTTGCGTGA 60.250 55.000 0.00 0.00 37.91 4.35
1291 3700 9.733219 GTAGTATACTTTGAGTGTGGTCTTATC 57.267 37.037 11.40 0.00 38.91 1.75
1312 3721 2.479730 CGGAGATCGACTGATTCGGTTT 60.480 50.000 0.00 0.00 42.81 3.27
1318 3727 1.194547 CGACTGATTCGGTTTGTGGTG 59.805 52.381 0.00 0.00 44.60 4.17
1336 3745 3.588842 TGGTGGTCTTCTGAAATGGATCT 59.411 43.478 0.00 0.00 0.00 2.75
1353 3762 0.892358 TCTGGTGCGTTCGGTAGTCT 60.892 55.000 0.00 0.00 0.00 3.24
1354 3763 0.038526 CTGGTGCGTTCGGTAGTCTT 60.039 55.000 0.00 0.00 0.00 3.01
1355 3764 0.390124 TGGTGCGTTCGGTAGTCTTT 59.610 50.000 0.00 0.00 0.00 2.52
1356 3765 0.788391 GGTGCGTTCGGTAGTCTTTG 59.212 55.000 0.00 0.00 0.00 2.77
1368 3777 6.282167 TCGGTAGTCTTTGTGTGAATTTACA 58.718 36.000 0.00 0.00 0.00 2.41
1398 3821 5.323581 TGAATGGTCAAATCACATCTTGGA 58.676 37.500 0.00 0.00 0.00 3.53
1409 3832 4.971939 TCACATCTTGGATTGTCTGAACA 58.028 39.130 0.00 0.00 0.00 3.18
1417 3840 1.291877 ATTGTCTGAACACGGCGAGC 61.292 55.000 16.62 0.00 34.35 5.03
1418 3841 2.355837 GTCTGAACACGGCGAGCA 60.356 61.111 16.62 4.69 0.00 4.26
1432 3855 1.373059 GAGCATAGCCCTGGTAGCC 59.627 63.158 0.00 0.00 0.00 3.93
1451 3874 2.744202 GCCGAGCGATTGGATCAAATAT 59.256 45.455 12.23 0.00 0.00 1.28
1455 3878 5.626543 CCGAGCGATTGGATCAAATATTTTG 59.373 40.000 0.00 0.00 0.00 2.44
1513 3936 8.531982 ACTAGAGTTCTACTGCATTTTATGTCA 58.468 33.333 0.00 0.00 0.00 3.58
1551 4056 9.085645 TCCTACTTGTGAAATTAGTCAGTTCTA 57.914 33.333 0.00 0.00 0.00 2.10
1565 4070 6.109359 AGTCAGTTCTACCATTACTGCATTC 58.891 40.000 0.00 0.00 39.24 2.67
1572 4077 3.766545 ACCATTACTGCATTCACAGGTT 58.233 40.909 0.00 0.00 42.21 3.50
1573 4078 4.917385 ACCATTACTGCATTCACAGGTTA 58.083 39.130 0.00 0.00 42.21 2.85
1637 4417 9.657121 GCATTCTTGAATATTAAGAACTACTGC 57.343 33.333 15.94 16.43 44.29 4.40
1668 4448 2.105993 TGATCGTAGGCTCCTAGCTGTA 59.894 50.000 0.00 0.00 41.99 2.74
1672 4452 4.070716 TCGTAGGCTCCTAGCTGTATAAC 58.929 47.826 0.00 0.00 41.99 1.89
1673 4453 3.190953 CGTAGGCTCCTAGCTGTATAACC 59.809 52.174 0.00 0.00 41.99 2.85
1689 4469 6.920817 TGTATAACCCTGTAAGAGATATGCG 58.079 40.000 0.00 0.00 34.07 4.73
1696 4476 4.081972 CCTGTAAGAGATATGCGCCATAGT 60.082 45.833 4.18 0.00 34.07 2.12
1697 4477 4.809673 TGTAAGAGATATGCGCCATAGTG 58.190 43.478 4.18 0.00 29.42 2.74
1700 4480 4.383850 AGAGATATGCGCCATAGTGATC 57.616 45.455 4.18 0.00 29.42 2.92
1720 4500 2.118683 CGCAATTGTTGGTTGTCACTG 58.881 47.619 7.40 0.00 0.00 3.66
1741 4521 2.229792 GCAAGTGTCCTGTTCATGGAA 58.770 47.619 0.00 0.00 35.10 3.53
1773 4553 4.751060 AGCATTCGGTATTGTAAGTTCGA 58.249 39.130 0.00 0.00 0.00 3.71
1777 4557 6.401796 GCATTCGGTATTGTAAGTTCGAAACT 60.402 38.462 0.00 0.00 45.46 2.66
1793 4573 3.674997 GAAACTGCATAACCTCAGTCCA 58.325 45.455 0.00 0.00 42.19 4.02
1796 4576 4.408182 ACTGCATAACCTCAGTCCATAC 57.592 45.455 0.00 0.00 39.11 2.39
1805 4585 3.196901 ACCTCAGTCCATACGCATGTAAA 59.803 43.478 0.00 0.00 33.44 2.01
1816 4596 3.937814 ACGCATGTAAAGTGATCCTTGA 58.062 40.909 0.00 0.00 32.32 3.02
1859 4639 1.008538 CTGTTTGCGGACAAGGTGC 60.009 57.895 0.00 0.00 37.04 5.01
2017 4797 5.312079 AGCAAGCTCAGTGATAACTTCTTT 58.688 37.500 0.00 0.00 0.00 2.52
2035 4815 0.109827 TTGCAATCATTGTGCCGACG 60.110 50.000 0.00 0.00 41.49 5.12
2077 4857 5.392487 GGCCAGCACTAGAAAGAAAGAAATC 60.392 44.000 0.00 0.00 0.00 2.17
2209 4999 8.661257 TGTTAACCATAATACATTTGTGTCTCG 58.339 33.333 2.48 0.00 0.00 4.04
2540 5335 5.771666 ACTGTGTCCATTGATTCTTGATTGT 59.228 36.000 0.00 0.00 0.00 2.71
2616 5413 5.961396 TGCATTTTTAATTGCCATTGCTT 57.039 30.435 6.83 0.00 38.08 3.91
2617 5414 7.627298 ATGCATTTTTAATTGCCATTGCTTA 57.373 28.000 0.00 0.00 38.08 3.09
2619 5416 8.728337 TGCATTTTTAATTGCCATTGCTTATA 57.272 26.923 6.83 0.00 38.08 0.98
2620 5417 9.170734 TGCATTTTTAATTGCCATTGCTTATAA 57.829 25.926 6.83 0.00 38.08 0.98
2621 5418 9.654417 GCATTTTTAATTGCCATTGCTTATAAG 57.346 29.630 8.20 8.20 38.71 1.73
2805 5665 4.142816 CGGTGGATTCTCACATTCACTTTC 60.143 45.833 7.34 0.00 39.27 2.62
2848 5709 9.216117 AGACACACTATTCTTTTGTTGTATACC 57.784 33.333 0.00 0.00 0.00 2.73
2855 5716 5.554822 TCTTTTGTTGTATACCGCATTCC 57.445 39.130 0.00 0.00 0.00 3.01
2865 5726 5.883115 TGTATACCGCATTCCATTTTCTTGA 59.117 36.000 0.00 0.00 0.00 3.02
2866 5727 3.575965 ACCGCATTCCATTTTCTTGAC 57.424 42.857 0.00 0.00 0.00 3.18
2867 5728 2.890311 ACCGCATTCCATTTTCTTGACA 59.110 40.909 0.00 0.00 0.00 3.58
2887 5748 4.899502 ACATTGTACCTGGAAGAAGTGAG 58.100 43.478 0.00 0.00 34.07 3.51
2911 5772 2.767960 GCCATTTTGAGGACCCATGATT 59.232 45.455 0.00 0.00 0.00 2.57
2956 5817 5.998454 ATCATGACACTTTATACTGCTGC 57.002 39.130 0.00 0.00 0.00 5.25
2960 5821 3.118775 TGACACTTTATACTGCTGCGGAT 60.119 43.478 16.72 4.97 0.00 4.18
3109 7363 4.076394 GGGAATAACACTACCTGCAAACA 58.924 43.478 0.00 0.00 0.00 2.83
3110 7364 4.521256 GGGAATAACACTACCTGCAAACAA 59.479 41.667 0.00 0.00 0.00 2.83
3111 7365 5.185056 GGGAATAACACTACCTGCAAACAAT 59.815 40.000 0.00 0.00 0.00 2.71
3137 7391 3.766591 AGACTGTTGCTGATAGCTGTACT 59.233 43.478 0.00 0.00 42.97 2.73
3139 7393 3.118956 ACTGTTGCTGATAGCTGTACTCC 60.119 47.826 0.00 0.00 42.97 3.85
3149 7403 1.673477 CTGTACTCCTGTGGCTGCA 59.327 57.895 0.50 0.00 0.00 4.41
3195 7449 8.942669 TGTTTATTTAGCGCATAATTAATCCG 57.057 30.769 11.47 0.00 0.00 4.18
3249 7503 1.079197 AATCCGAGTGCGTGCATGA 60.079 52.632 10.93 0.00 35.23 3.07
3447 7701 8.519526 CAGTAATTAACAAGTGGGCATCTTTAA 58.480 33.333 0.00 0.00 0.00 1.52
3448 7702 9.084533 AGTAATTAACAAGTGGGCATCTTTAAA 57.915 29.630 0.00 0.00 0.00 1.52
3449 7703 9.135843 GTAATTAACAAGTGGGCATCTTTAAAC 57.864 33.333 0.00 0.00 0.00 2.01
3450 7704 6.716934 TTAACAAGTGGGCATCTTTAAACA 57.283 33.333 0.00 0.00 0.00 2.83
3476 7735 4.060900 GAGTGGTGGCTCATACATACATG 58.939 47.826 0.00 0.00 35.67 3.21
3528 7796 5.181056 ACAATCACGTCAGCAATGAATGTTA 59.819 36.000 0.00 0.00 33.69 2.41
3532 7800 6.314018 TCACGTCAGCAATGAATGTTATTTC 58.686 36.000 0.00 0.00 0.00 2.17
3541 7809 7.171337 AGCAATGAATGTTATTTCCACAACAAC 59.829 33.333 0.00 0.00 38.11 3.32
3542 7810 7.042187 GCAATGAATGTTATTTCCACAACAACA 60.042 33.333 0.00 0.00 38.11 3.33
3543 7811 8.824781 CAATGAATGTTATTTCCACAACAACAA 58.175 29.630 0.00 0.00 38.11 2.83
3662 7978 2.839486 TGGCACTGTACCAAAGAGAG 57.161 50.000 0.00 0.00 33.12 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.972502 CCAAGTAAAGCTTTTGTACGTGC 59.027 43.478 18.47 0.00 34.69 5.34
67 68 1.512926 CACTCGCACAACCTAAGCTT 58.487 50.000 3.48 3.48 0.00 3.74
76 77 2.665649 ATTATCGACCACTCGCACAA 57.334 45.000 0.00 0.00 39.96 3.33
107 108 5.950544 ATATAGGATACCTATTTGCCGCA 57.049 39.130 14.28 0.00 43.60 5.69
163 164 8.620416 GGTGATGTGTCATGCTTGTATATTAAA 58.380 33.333 0.00 0.00 36.60 1.52
164 165 7.772757 TGGTGATGTGTCATGCTTGTATATTAA 59.227 33.333 0.00 0.00 36.60 1.40
165 166 7.278875 TGGTGATGTGTCATGCTTGTATATTA 58.721 34.615 0.00 0.00 36.60 0.98
166 167 6.121590 TGGTGATGTGTCATGCTTGTATATT 58.878 36.000 0.00 0.00 36.60 1.28
167 168 5.683681 TGGTGATGTGTCATGCTTGTATAT 58.316 37.500 0.00 0.00 36.60 0.86
168 169 5.096443 TGGTGATGTGTCATGCTTGTATA 57.904 39.130 0.00 0.00 36.60 1.47
169 170 3.954200 TGGTGATGTGTCATGCTTGTAT 58.046 40.909 0.00 0.00 36.60 2.29
170 171 3.415457 TGGTGATGTGTCATGCTTGTA 57.585 42.857 0.00 0.00 36.60 2.41
171 172 2.275134 TGGTGATGTGTCATGCTTGT 57.725 45.000 0.00 0.00 36.60 3.16
172 173 6.622833 TTATATGGTGATGTGTCATGCTTG 57.377 37.500 0.00 0.00 36.60 4.01
173 174 7.828508 AATTATATGGTGATGTGTCATGCTT 57.171 32.000 0.00 0.00 36.60 3.91
174 175 8.953313 CATAATTATATGGTGATGTGTCATGCT 58.047 33.333 0.00 0.00 36.13 3.79
189 190 9.643693 GTGCCTTTTTCCATCCATAATTATATG 57.356 33.333 0.00 0.00 38.93 1.78
190 191 9.378504 TGTGCCTTTTTCCATCCATAATTATAT 57.621 29.630 0.00 0.00 0.00 0.86
191 192 8.637986 GTGTGCCTTTTTCCATCCATAATTATA 58.362 33.333 0.00 0.00 0.00 0.98
192 193 7.125507 TGTGTGCCTTTTTCCATCCATAATTAT 59.874 33.333 0.00 0.00 0.00 1.28
204 205 3.451141 TGTTGATGTGTGCCTTTTTCC 57.549 42.857 0.00 0.00 0.00 3.13
205 206 3.184986 GCATGTTGATGTGTGCCTTTTTC 59.815 43.478 0.00 0.00 31.50 2.29
206 207 3.132925 GCATGTTGATGTGTGCCTTTTT 58.867 40.909 0.00 0.00 31.50 1.94
210 212 1.330234 TTGCATGTTGATGTGTGCCT 58.670 45.000 0.00 0.00 36.79 4.75
230 232 3.202906 GTTCGCCTTTGCCTATACATGA 58.797 45.455 0.00 0.00 0.00 3.07
235 237 1.407712 GGTGGTTCGCCTTTGCCTATA 60.408 52.381 0.00 0.00 38.36 1.31
246 248 0.519961 GGTTACATGTGGTGGTTCGC 59.480 55.000 9.11 0.00 0.00 4.70
387 394 9.906660 TGAGTTTTGAATGTGTGGAATATAAAC 57.093 29.630 0.00 0.00 0.00 2.01
416 423 7.148656 GCTGCGGAAATGTGTTACAAAATATTT 60.149 33.333 0.00 0.00 0.00 1.40
430 437 2.255252 GCGTTGCTGCGGAAATGT 59.745 55.556 7.33 0.00 0.00 2.71
467 474 0.383949 TTGGTTCGCTTTGCAAGACC 59.616 50.000 0.00 5.29 0.00 3.85
468 475 1.202245 TGTTGGTTCGCTTTGCAAGAC 60.202 47.619 0.00 0.00 0.00 3.01
469 476 1.098869 TGTTGGTTCGCTTTGCAAGA 58.901 45.000 0.00 0.00 0.00 3.02
470 477 1.788308 CATGTTGGTTCGCTTTGCAAG 59.212 47.619 0.00 0.00 0.00 4.01
471 478 1.135915 ACATGTTGGTTCGCTTTGCAA 59.864 42.857 0.00 0.00 0.00 4.08
472 479 0.743688 ACATGTTGGTTCGCTTTGCA 59.256 45.000 0.00 0.00 0.00 4.08
473 480 1.130955 CACATGTTGGTTCGCTTTGC 58.869 50.000 0.00 0.00 0.00 3.68
474 481 1.769733 CCACATGTTGGTTCGCTTTG 58.230 50.000 0.00 0.00 41.10 2.77
485 492 4.335416 CTCTAACCATCCAACCACATGTT 58.665 43.478 0.00 0.00 37.80 2.71
486 493 3.873801 GCTCTAACCATCCAACCACATGT 60.874 47.826 0.00 0.00 0.00 3.21
487 494 2.684881 GCTCTAACCATCCAACCACATG 59.315 50.000 0.00 0.00 0.00 3.21
488 495 2.680805 CGCTCTAACCATCCAACCACAT 60.681 50.000 0.00 0.00 0.00 3.21
489 496 1.338674 CGCTCTAACCATCCAACCACA 60.339 52.381 0.00 0.00 0.00 4.17
490 497 1.066430 TCGCTCTAACCATCCAACCAC 60.066 52.381 0.00 0.00 0.00 4.16
491 498 1.066430 GTCGCTCTAACCATCCAACCA 60.066 52.381 0.00 0.00 0.00 3.67
492 499 1.207329 AGTCGCTCTAACCATCCAACC 59.793 52.381 0.00 0.00 0.00 3.77
493 500 2.271800 CAGTCGCTCTAACCATCCAAC 58.728 52.381 0.00 0.00 0.00 3.77
494 501 1.899814 ACAGTCGCTCTAACCATCCAA 59.100 47.619 0.00 0.00 0.00 3.53
495 502 1.204704 CACAGTCGCTCTAACCATCCA 59.795 52.381 0.00 0.00 0.00 3.41
496 503 1.471676 CCACAGTCGCTCTAACCATCC 60.472 57.143 0.00 0.00 0.00 3.51
497 504 1.204941 ACCACAGTCGCTCTAACCATC 59.795 52.381 0.00 0.00 0.00 3.51
498 505 1.267121 ACCACAGTCGCTCTAACCAT 58.733 50.000 0.00 0.00 0.00 3.55
499 506 1.913778 TACCACAGTCGCTCTAACCA 58.086 50.000 0.00 0.00 0.00 3.67
500 507 2.688958 AGATACCACAGTCGCTCTAACC 59.311 50.000 0.00 0.00 0.00 2.85
501 508 3.243134 GGAGATACCACAGTCGCTCTAAC 60.243 52.174 0.00 0.00 38.79 2.34
502 509 2.950309 GGAGATACCACAGTCGCTCTAA 59.050 50.000 0.00 0.00 38.79 2.10
503 510 2.092592 TGGAGATACCACAGTCGCTCTA 60.093 50.000 0.00 0.00 44.64 2.43
504 511 1.341089 TGGAGATACCACAGTCGCTCT 60.341 52.381 0.00 0.00 44.64 4.09
505 512 1.066303 CTGGAGATACCACAGTCGCTC 59.934 57.143 0.00 0.00 44.64 5.03
506 513 1.107114 CTGGAGATACCACAGTCGCT 58.893 55.000 0.00 0.00 44.64 4.93
507 514 0.528684 GCTGGAGATACCACAGTCGC 60.529 60.000 0.00 0.00 44.64 5.19
508 515 0.103208 GGCTGGAGATACCACAGTCG 59.897 60.000 0.00 0.00 44.64 4.18
509 516 0.466124 GGGCTGGAGATACCACAGTC 59.534 60.000 0.00 0.00 44.64 3.51
510 517 0.252696 TGGGCTGGAGATACCACAGT 60.253 55.000 0.00 0.00 44.64 3.55
511 518 2.607811 TGGGCTGGAGATACCACAG 58.392 57.895 0.00 0.00 44.64 3.66
512 519 4.908333 TGGGCTGGAGATACCACA 57.092 55.556 0.00 0.00 44.64 4.17
515 522 1.700042 CCTGGTGGGCTGGAGATACC 61.700 65.000 0.00 0.00 39.54 2.73
516 523 1.832912 CCTGGTGGGCTGGAGATAC 59.167 63.158 0.00 0.00 0.00 2.24
517 524 4.399764 CCTGGTGGGCTGGAGATA 57.600 61.111 0.00 0.00 0.00 1.98
527 534 1.549203 CAGGATTTGAACCCTGGTGG 58.451 55.000 0.00 0.00 44.68 4.61
532 539 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
533 540 1.177401 GAGCACCAGGATTTGAACCC 58.823 55.000 0.00 0.00 0.00 4.11
534 541 0.804989 CGAGCACCAGGATTTGAACC 59.195 55.000 0.00 0.00 0.00 3.62
535 542 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.000 0.00 0.00 0.00 3.18
536 543 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
537 544 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
538 545 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
539 546 1.549203 AAATGCGAGCACCAGGATTT 58.451 45.000 0.00 0.00 34.37 2.17
540 547 1.549203 AAAATGCGAGCACCAGGATT 58.451 45.000 0.00 0.00 0.00 3.01
541 548 1.549203 AAAAATGCGAGCACCAGGAT 58.451 45.000 0.00 0.00 0.00 3.24
542 549 3.034924 AAAAATGCGAGCACCAGGA 57.965 47.368 0.00 0.00 0.00 3.86
564 571 6.661377 TCACCGGAAATCCTGAAATAAATTCA 59.339 34.615 9.46 0.00 45.71 2.57
565 572 7.095695 TCACCGGAAATCCTGAAATAAATTC 57.904 36.000 9.46 0.00 38.60 2.17
566 573 7.491682 CATCACCGGAAATCCTGAAATAAATT 58.508 34.615 9.46 0.00 0.00 1.82
567 574 6.461509 GCATCACCGGAAATCCTGAAATAAAT 60.462 38.462 9.46 0.00 0.00 1.40
568 575 5.163561 GCATCACCGGAAATCCTGAAATAAA 60.164 40.000 9.46 0.00 0.00 1.40
569 576 4.338118 GCATCACCGGAAATCCTGAAATAA 59.662 41.667 9.46 0.00 0.00 1.40
570 577 3.882888 GCATCACCGGAAATCCTGAAATA 59.117 43.478 9.46 0.00 0.00 1.40
571 578 2.689983 GCATCACCGGAAATCCTGAAAT 59.310 45.455 9.46 0.00 0.00 2.17
572 579 2.091541 GCATCACCGGAAATCCTGAAA 58.908 47.619 9.46 0.00 0.00 2.69
573 580 1.750193 GCATCACCGGAAATCCTGAA 58.250 50.000 9.46 0.00 0.00 3.02
574 581 0.461870 CGCATCACCGGAAATCCTGA 60.462 55.000 9.46 0.00 0.00 3.86
575 582 2.016961 CGCATCACCGGAAATCCTG 58.983 57.895 9.46 0.00 0.00 3.86
576 583 1.819632 GCGCATCACCGGAAATCCT 60.820 57.895 9.46 0.00 0.00 3.24
577 584 1.447317 ATGCGCATCACCGGAAATCC 61.447 55.000 19.28 0.00 30.90 3.01
578 585 0.381801 AATGCGCATCACCGGAAATC 59.618 50.000 25.53 0.00 30.90 2.17
579 586 0.381801 GAATGCGCATCACCGGAAAT 59.618 50.000 25.53 3.87 30.90 2.17
580 587 0.957888 TGAATGCGCATCACCGGAAA 60.958 50.000 25.53 2.10 30.90 3.13
581 588 1.368345 CTGAATGCGCATCACCGGAA 61.368 55.000 25.53 4.46 30.90 4.30
582 589 1.815003 CTGAATGCGCATCACCGGA 60.815 57.895 25.53 4.80 0.00 5.14
583 590 2.108514 ACTGAATGCGCATCACCGG 61.109 57.895 25.53 21.21 0.00 5.28
584 591 1.061411 CACTGAATGCGCATCACCG 59.939 57.895 25.53 18.28 0.00 4.94
585 592 1.430632 CCACTGAATGCGCATCACC 59.569 57.895 25.53 16.03 0.00 4.02
586 593 1.026182 TCCCACTGAATGCGCATCAC 61.026 55.000 25.53 20.34 0.00 3.06
587 594 0.745486 CTCCCACTGAATGCGCATCA 60.745 55.000 25.53 20.60 0.00 3.07
588 595 1.442526 CCTCCCACTGAATGCGCATC 61.443 60.000 25.53 17.12 0.00 3.91
589 596 1.452651 CCTCCCACTGAATGCGCAT 60.453 57.895 19.28 19.28 0.00 4.73
590 597 2.046023 CCTCCCACTGAATGCGCA 60.046 61.111 14.96 14.96 0.00 6.09
591 598 1.817099 CTCCTCCCACTGAATGCGC 60.817 63.158 0.00 0.00 0.00 6.09
592 599 0.460987 GTCTCCTCCCACTGAATGCG 60.461 60.000 0.00 0.00 0.00 4.73
593 600 0.460987 CGTCTCCTCCCACTGAATGC 60.461 60.000 0.00 0.00 0.00 3.56
594 601 0.898320 ACGTCTCCTCCCACTGAATG 59.102 55.000 0.00 0.00 0.00 2.67
595 602 1.550976 GAACGTCTCCTCCCACTGAAT 59.449 52.381 0.00 0.00 0.00 2.57
596 603 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
597 604 0.898789 GGAACGTCTCCTCCCACTGA 60.899 60.000 8.87 0.00 41.61 3.41
598 605 1.592223 GGAACGTCTCCTCCCACTG 59.408 63.158 8.87 0.00 41.61 3.66
599 606 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
618 625 2.393768 TAGGCACCTCGTCGTCGAC 61.394 63.158 15.51 15.51 41.35 4.20
619 626 2.046988 TAGGCACCTCGTCGTCGA 60.047 61.111 4.42 4.42 44.12 4.20
620 627 2.099831 GTAGGCACCTCGTCGTCG 59.900 66.667 0.00 0.00 38.55 5.12
621 628 2.099831 CGTAGGCACCTCGTCGTC 59.900 66.667 0.00 0.00 0.00 4.20
622 629 3.437795 CCGTAGGCACCTCGTCGT 61.438 66.667 0.00 0.00 46.14 4.34
634 641 6.364165 TCTTGAAATTTACGAAGTCACCGTAG 59.636 38.462 0.00 0.00 43.93 3.51
635 642 6.144402 GTCTTGAAATTTACGAAGTCACCGTA 59.856 38.462 0.00 0.00 43.93 4.02
636 643 5.050567 GTCTTGAAATTTACGAAGTCACCGT 60.051 40.000 0.00 0.00 43.93 4.83
637 644 5.371629 GTCTTGAAATTTACGAAGTCACCG 58.628 41.667 0.00 0.00 43.93 4.94
638 645 5.176223 TCGTCTTGAAATTTACGAAGTCACC 59.824 40.000 10.62 0.00 43.93 4.02
639 646 6.206600 TCGTCTTGAAATTTACGAAGTCAC 57.793 37.500 10.62 0.80 43.93 3.67
640 647 8.592155 CATATCGTCTTGAAATTTACGAAGTCA 58.408 33.333 15.58 4.97 46.18 3.41
641 648 7.579450 GCATATCGTCTTGAAATTTACGAAGTC 59.421 37.037 15.58 5.16 46.18 3.01
642 649 7.399523 GCATATCGTCTTGAAATTTACGAAGT 58.600 34.615 15.58 5.59 46.18 3.01
643 650 6.846283 GGCATATCGTCTTGAAATTTACGAAG 59.154 38.462 15.58 10.75 46.18 3.79
644 651 6.508880 CGGCATATCGTCTTGAAATTTACGAA 60.509 38.462 15.58 7.79 46.18 3.85
645 652 5.051307 CGGCATATCGTCTTGAAATTTACGA 60.051 40.000 14.35 14.35 46.98 3.43
646 653 5.130519 CGGCATATCGTCTTGAAATTTACG 58.869 41.667 5.11 5.11 36.71 3.18
647 654 5.440685 CCGGCATATCGTCTTGAAATTTAC 58.559 41.667 0.00 0.00 0.00 2.01
648 655 4.024387 GCCGGCATATCGTCTTGAAATTTA 60.024 41.667 24.80 0.00 0.00 1.40
649 656 3.243068 GCCGGCATATCGTCTTGAAATTT 60.243 43.478 24.80 0.00 0.00 1.82
650 657 2.290641 GCCGGCATATCGTCTTGAAATT 59.709 45.455 24.80 0.00 0.00 1.82
651 658 1.873591 GCCGGCATATCGTCTTGAAAT 59.126 47.619 24.80 0.00 0.00 2.17
652 659 1.134521 AGCCGGCATATCGTCTTGAAA 60.135 47.619 31.54 0.00 0.00 2.69
653 660 0.464036 AGCCGGCATATCGTCTTGAA 59.536 50.000 31.54 0.00 0.00 2.69
654 661 0.032130 GAGCCGGCATATCGTCTTGA 59.968 55.000 31.54 0.00 0.00 3.02
655 662 0.249447 TGAGCCGGCATATCGTCTTG 60.249 55.000 31.54 0.00 0.00 3.02
656 663 0.032678 CTGAGCCGGCATATCGTCTT 59.967 55.000 31.54 3.33 0.00 3.01
657 664 1.109920 ACTGAGCCGGCATATCGTCT 61.110 55.000 31.54 4.27 0.00 4.18
658 665 0.664767 GACTGAGCCGGCATATCGTC 60.665 60.000 31.54 22.06 0.00 4.20
659 666 1.109920 AGACTGAGCCGGCATATCGT 61.110 55.000 31.54 18.45 0.00 3.73
660 667 0.032678 AAGACTGAGCCGGCATATCG 59.967 55.000 31.54 15.49 0.00 2.92
661 668 2.139118 GAAAGACTGAGCCGGCATATC 58.861 52.381 31.54 18.63 0.00 1.63
662 669 1.539065 CGAAAGACTGAGCCGGCATAT 60.539 52.381 31.54 8.11 0.00 1.78
663 670 0.179111 CGAAAGACTGAGCCGGCATA 60.179 55.000 31.54 16.21 0.00 3.14
664 671 1.448540 CGAAAGACTGAGCCGGCAT 60.449 57.895 31.54 14.28 0.00 4.40
665 672 2.048222 CGAAAGACTGAGCCGGCA 60.048 61.111 31.54 7.98 0.00 5.69
666 673 2.815647 CCGAAAGACTGAGCCGGC 60.816 66.667 21.89 21.89 33.47 6.13
667 674 1.153745 CTCCGAAAGACTGAGCCGG 60.154 63.158 0.00 0.00 41.36 6.13
668 675 1.153745 CCTCCGAAAGACTGAGCCG 60.154 63.158 0.00 0.00 0.00 5.52
669 676 0.390472 CACCTCCGAAAGACTGAGCC 60.390 60.000 0.00 0.00 0.00 4.70
670 677 1.016653 GCACCTCCGAAAGACTGAGC 61.017 60.000 0.00 0.00 0.00 4.26
671 678 0.605589 AGCACCTCCGAAAGACTGAG 59.394 55.000 0.00 0.00 0.00 3.35
672 679 0.603569 GAGCACCTCCGAAAGACTGA 59.396 55.000 0.00 0.00 0.00 3.41
673 680 0.318441 TGAGCACCTCCGAAAGACTG 59.682 55.000 0.00 0.00 0.00 3.51
674 681 1.270907 ATGAGCACCTCCGAAAGACT 58.729 50.000 0.00 0.00 0.00 3.24
675 682 2.961526 TATGAGCACCTCCGAAAGAC 57.038 50.000 0.00 0.00 0.00 3.01
676 683 2.168521 CCTTATGAGCACCTCCGAAAGA 59.831 50.000 0.00 0.00 0.00 2.52
677 684 2.555199 CCTTATGAGCACCTCCGAAAG 58.445 52.381 0.00 0.00 0.00 2.62
678 685 1.209504 CCCTTATGAGCACCTCCGAAA 59.790 52.381 0.00 0.00 0.00 3.46
679 686 0.830648 CCCTTATGAGCACCTCCGAA 59.169 55.000 0.00 0.00 0.00 4.30
680 687 0.325296 ACCCTTATGAGCACCTCCGA 60.325 55.000 0.00 0.00 0.00 4.55
681 688 1.341531 CTACCCTTATGAGCACCTCCG 59.658 57.143 0.00 0.00 0.00 4.63
682 689 1.694696 CCTACCCTTATGAGCACCTCC 59.305 57.143 0.00 0.00 0.00 4.30
683 690 1.694696 CCCTACCCTTATGAGCACCTC 59.305 57.143 0.00 0.00 0.00 3.85
684 691 1.009675 ACCCTACCCTTATGAGCACCT 59.990 52.381 0.00 0.00 0.00 4.00
685 692 1.508256 ACCCTACCCTTATGAGCACC 58.492 55.000 0.00 0.00 0.00 5.01
686 693 3.557264 GCATACCCTACCCTTATGAGCAC 60.557 52.174 0.00 0.00 0.00 4.40
687 694 2.637872 GCATACCCTACCCTTATGAGCA 59.362 50.000 0.00 0.00 0.00 4.26
688 695 2.353803 CGCATACCCTACCCTTATGAGC 60.354 54.545 0.00 0.00 0.00 4.26
689 696 2.897969 ACGCATACCCTACCCTTATGAG 59.102 50.000 0.00 0.00 0.00 2.90
690 697 2.631062 CACGCATACCCTACCCTTATGA 59.369 50.000 0.00 0.00 0.00 2.15
691 698 2.367567 ACACGCATACCCTACCCTTATG 59.632 50.000 0.00 0.00 0.00 1.90
692 699 2.686119 ACACGCATACCCTACCCTTAT 58.314 47.619 0.00 0.00 0.00 1.73
693 700 2.163810 ACACGCATACCCTACCCTTA 57.836 50.000 0.00 0.00 0.00 2.69
694 701 2.163810 TACACGCATACCCTACCCTT 57.836 50.000 0.00 0.00 0.00 3.95
695 702 1.968493 CATACACGCATACCCTACCCT 59.032 52.381 0.00 0.00 0.00 4.34
696 703 1.690352 ACATACACGCATACCCTACCC 59.310 52.381 0.00 0.00 0.00 3.69
697 704 2.101917 ACACATACACGCATACCCTACC 59.898 50.000 0.00 0.00 0.00 3.18
698 705 3.447918 ACACATACACGCATACCCTAC 57.552 47.619 0.00 0.00 0.00 3.18
699 706 3.447944 TGAACACATACACGCATACCCTA 59.552 43.478 0.00 0.00 0.00 3.53
700 707 2.235155 TGAACACATACACGCATACCCT 59.765 45.455 0.00 0.00 0.00 4.34
701 708 2.623535 TGAACACATACACGCATACCC 58.376 47.619 0.00 0.00 0.00 3.69
702 709 4.447724 CCTATGAACACATACACGCATACC 59.552 45.833 0.00 0.00 0.00 2.73
703 710 4.447724 CCCTATGAACACATACACGCATAC 59.552 45.833 0.00 0.00 0.00 2.39
704 711 4.342665 TCCCTATGAACACATACACGCATA 59.657 41.667 0.00 0.00 0.00 3.14
705 712 3.133901 TCCCTATGAACACATACACGCAT 59.866 43.478 0.00 0.00 0.00 4.73
706 713 2.498078 TCCCTATGAACACATACACGCA 59.502 45.455 0.00 0.00 0.00 5.24
707 714 3.173668 TCCCTATGAACACATACACGC 57.826 47.619 0.00 0.00 0.00 5.34
708 715 4.944048 TCATCCCTATGAACACATACACG 58.056 43.478 0.00 0.00 39.20 4.49
709 716 5.755375 CACTCATCCCTATGAACACATACAC 59.245 44.000 0.00 0.00 41.57 2.90
710 717 5.425217 ACACTCATCCCTATGAACACATACA 59.575 40.000 0.00 0.00 41.57 2.29
711 718 5.918608 ACACTCATCCCTATGAACACATAC 58.081 41.667 0.00 0.00 41.57 2.39
712 719 7.670364 CATACACTCATCCCTATGAACACATA 58.330 38.462 0.00 0.00 41.57 2.29
713 720 6.528321 CATACACTCATCCCTATGAACACAT 58.472 40.000 0.00 0.00 41.57 3.21
714 721 5.684813 GCATACACTCATCCCTATGAACACA 60.685 44.000 0.00 0.00 41.57 3.72
715 722 4.752101 GCATACACTCATCCCTATGAACAC 59.248 45.833 0.00 0.00 41.57 3.32
716 723 4.501400 CGCATACACTCATCCCTATGAACA 60.501 45.833 0.00 0.00 41.57 3.18
717 724 3.990469 CGCATACACTCATCCCTATGAAC 59.010 47.826 0.00 0.00 41.57 3.18
718 725 3.554960 GCGCATACACTCATCCCTATGAA 60.555 47.826 0.30 0.00 41.57 2.57
719 726 2.029020 GCGCATACACTCATCCCTATGA 60.029 50.000 0.30 0.00 39.87 2.15
720 727 2.028658 AGCGCATACACTCATCCCTATG 60.029 50.000 11.47 0.00 0.00 2.23
721 728 2.251818 AGCGCATACACTCATCCCTAT 58.748 47.619 11.47 0.00 0.00 2.57
722 729 1.704641 AGCGCATACACTCATCCCTA 58.295 50.000 11.47 0.00 0.00 3.53
723 730 0.833287 AAGCGCATACACTCATCCCT 59.167 50.000 11.47 0.00 0.00 4.20
724 731 0.940126 CAAGCGCATACACTCATCCC 59.060 55.000 11.47 0.00 0.00 3.85
725 732 1.656652 ACAAGCGCATACACTCATCC 58.343 50.000 11.47 0.00 0.00 3.51
726 733 5.863935 TCATATACAAGCGCATACACTCATC 59.136 40.000 11.47 0.00 0.00 2.92
727 734 5.783111 TCATATACAAGCGCATACACTCAT 58.217 37.500 11.47 0.00 0.00 2.90
728 735 5.195001 TCATATACAAGCGCATACACTCA 57.805 39.130 11.47 0.00 0.00 3.41
729 736 5.003872 CGATCATATACAAGCGCATACACTC 59.996 44.000 11.47 0.00 0.00 3.51
730 737 4.859245 CGATCATATACAAGCGCATACACT 59.141 41.667 11.47 0.00 0.00 3.55
731 738 4.490959 GCGATCATATACAAGCGCATACAC 60.491 45.833 11.47 0.00 43.45 2.90
732 739 3.612423 GCGATCATATACAAGCGCATACA 59.388 43.478 11.47 0.00 43.45 2.29
733 740 3.859961 AGCGATCATATACAAGCGCATAC 59.140 43.478 11.47 0.00 46.05 2.39
734 741 4.110036 AGCGATCATATACAAGCGCATA 57.890 40.909 11.47 0.00 46.05 3.14
735 742 2.964740 AGCGATCATATACAAGCGCAT 58.035 42.857 11.47 0.00 46.05 4.73
736 743 2.438868 AGCGATCATATACAAGCGCA 57.561 45.000 11.47 0.00 46.05 6.09
737 744 2.476619 ACAAGCGATCATATACAAGCGC 59.523 45.455 0.00 0.00 44.22 5.92
738 745 3.490896 ACACAAGCGATCATATACAAGCG 59.509 43.478 0.00 0.00 0.00 4.68
739 746 4.747108 AGACACAAGCGATCATATACAAGC 59.253 41.667 0.00 0.00 0.00 4.01
740 747 5.750547 ACAGACACAAGCGATCATATACAAG 59.249 40.000 0.00 0.00 0.00 3.16
741 748 5.660460 ACAGACACAAGCGATCATATACAA 58.340 37.500 0.00 0.00 0.00 2.41
742 749 5.262588 ACAGACACAAGCGATCATATACA 57.737 39.130 0.00 0.00 0.00 2.29
743 750 6.439599 AGTACAGACACAAGCGATCATATAC 58.560 40.000 0.00 0.00 0.00 1.47
744 751 6.635030 AGTACAGACACAAGCGATCATATA 57.365 37.500 0.00 0.00 0.00 0.86
745 752 5.521906 AGTACAGACACAAGCGATCATAT 57.478 39.130 0.00 0.00 0.00 1.78
746 753 4.983671 AGTACAGACACAAGCGATCATA 57.016 40.909 0.00 0.00 0.00 2.15
747 754 3.876274 AGTACAGACACAAGCGATCAT 57.124 42.857 0.00 0.00 0.00 2.45
748 755 4.776795 TTAGTACAGACACAAGCGATCA 57.223 40.909 0.00 0.00 0.00 2.92
749 756 5.103000 ACATTAGTACAGACACAAGCGATC 58.897 41.667 0.00 0.00 0.00 3.69
750 757 5.073311 ACATTAGTACAGACACAAGCGAT 57.927 39.130 0.00 0.00 0.00 4.58
751 758 4.514781 ACATTAGTACAGACACAAGCGA 57.485 40.909 0.00 0.00 0.00 4.93
752 759 6.699895 TTAACATTAGTACAGACACAAGCG 57.300 37.500 0.00 0.00 0.00 4.68
776 783 7.220108 GCTTATTATTTTGCGAGACGGATTTTT 59.780 33.333 0.00 0.00 0.00 1.94
777 784 6.691388 GCTTATTATTTTGCGAGACGGATTTT 59.309 34.615 0.00 0.00 0.00 1.82
778 785 6.199393 GCTTATTATTTTGCGAGACGGATTT 58.801 36.000 0.00 0.00 0.00 2.17
779 786 5.748592 GCTTATTATTTTGCGAGACGGATT 58.251 37.500 0.00 0.00 0.00 3.01
780 787 5.344207 GCTTATTATTTTGCGAGACGGAT 57.656 39.130 0.00 0.00 0.00 4.18
781 788 4.789095 GCTTATTATTTTGCGAGACGGA 57.211 40.909 0.00 0.00 0.00 4.69
822 829 0.398664 TAGGCTGGCCCCTAGAGAAC 60.399 60.000 8.11 0.00 36.41 3.01
891 3284 2.307934 TTGAACTTGGGCTTTGTTGC 57.692 45.000 0.00 0.00 0.00 4.17
892 3285 3.860641 AGTTTGAACTTGGGCTTTGTTG 58.139 40.909 0.00 0.00 35.21 3.33
908 3302 0.037326 TCTGGCCGCTAGTGAGTTTG 60.037 55.000 4.44 0.00 0.00 2.93
912 3306 2.105930 GCTCTGGCCGCTAGTGAG 59.894 66.667 4.44 0.00 0.00 3.51
977 3377 0.108138 CGAGAGCGACTTGGGGAAAT 60.108 55.000 0.00 0.00 40.82 2.17
1017 3417 3.474570 ACCTGGATCCGCCTGAGC 61.475 66.667 7.39 0.00 37.79 4.26
1312 3721 2.441375 TCCATTTCAGAAGACCACCACA 59.559 45.455 0.00 0.00 0.00 4.17
1318 3727 3.944015 CACCAGATCCATTTCAGAAGACC 59.056 47.826 0.00 0.00 0.00 3.85
1336 3745 0.390124 AAAGACTACCGAACGCACCA 59.610 50.000 0.00 0.00 0.00 4.17
1356 3765 6.359617 CCATTCAAGTTCGTGTAAATTCACAC 59.640 38.462 1.36 1.36 44.37 3.82
1368 3777 4.578516 TGTGATTTGACCATTCAAGTTCGT 59.421 37.500 0.00 0.00 42.79 3.85
1398 3821 1.291877 GCTCGCCGTGTTCAGACAAT 61.292 55.000 0.00 0.00 37.57 2.71
1417 3840 1.668294 CTCGGCTACCAGGGCTATG 59.332 63.158 0.00 0.00 0.00 2.23
1418 3841 2.210711 GCTCGGCTACCAGGGCTAT 61.211 63.158 0.00 0.00 0.00 2.97
1425 3848 1.399744 ATCCAATCGCTCGGCTACCA 61.400 55.000 0.00 0.00 0.00 3.25
1432 3855 6.429624 TCAAAATATTTGATCCAATCGCTCG 58.570 36.000 0.39 0.00 0.00 5.03
1479 3902 5.172205 GCAGTAGAACTCTAGTCCCTTTTG 58.828 45.833 0.00 0.00 30.04 2.44
1480 3903 4.838986 TGCAGTAGAACTCTAGTCCCTTTT 59.161 41.667 0.00 0.00 30.04 2.27
1513 3936 8.974060 TTTCACAAGTAGGACACTAAGAAAAT 57.026 30.769 0.00 0.00 36.04 1.82
1551 4056 3.439857 ACCTGTGAATGCAGTAATGGT 57.560 42.857 0.00 0.00 34.84 3.55
1565 4070 0.887933 GTTGCACCCCATAACCTGTG 59.112 55.000 0.00 0.00 0.00 3.66
1572 4077 6.563037 TTAGTTACTATGTTGCACCCCATA 57.437 37.500 0.00 0.00 0.00 2.74
1573 4078 5.444744 TTAGTTACTATGTTGCACCCCAT 57.555 39.130 0.00 0.00 0.00 4.00
1637 4417 1.730772 GCCTACGATCATGCGCTAGAG 60.731 57.143 9.73 0.00 33.86 2.43
1668 4448 4.322801 GGCGCATATCTCTTACAGGGTTAT 60.323 45.833 10.83 0.00 0.00 1.89
1672 4452 1.344438 TGGCGCATATCTCTTACAGGG 59.656 52.381 10.83 0.00 0.00 4.45
1673 4453 2.820059 TGGCGCATATCTCTTACAGG 57.180 50.000 10.83 0.00 0.00 4.00
1689 4469 3.365832 CAACAATTGCGATCACTATGGC 58.634 45.455 5.05 0.00 37.35 4.40
1696 4476 2.620585 TGACAACCAACAATTGCGATCA 59.379 40.909 5.05 0.00 0.00 2.92
1697 4477 2.979813 GTGACAACCAACAATTGCGATC 59.020 45.455 5.05 0.00 0.00 3.69
1700 4480 2.118683 CAGTGACAACCAACAATTGCG 58.881 47.619 5.05 0.00 0.00 4.85
1720 4500 0.883833 CCATGAACAGGACACTTGCC 59.116 55.000 0.00 0.00 0.00 4.52
1741 4521 2.244000 CCGAATGCTCACGGTGTTT 58.756 52.632 8.17 0.00 43.53 2.83
1773 4553 3.788227 TGGACTGAGGTTATGCAGTTT 57.212 42.857 0.00 0.00 44.77 2.66
1777 4557 2.483013 GCGTATGGACTGAGGTTATGCA 60.483 50.000 0.00 0.00 0.00 3.96
1793 4573 5.670485 TCAAGGATCACTTTACATGCGTAT 58.330 37.500 0.00 0.00 37.29 3.06
1796 4576 6.791887 ATATCAAGGATCACTTTACATGCG 57.208 37.500 0.00 0.00 37.29 4.73
1805 4585 5.280882 CCCCTGCAATATATCAAGGATCACT 60.281 44.000 9.01 0.00 0.00 3.41
1816 4596 8.227507 AGAACTTTGTTATCCCCTGCAATATAT 58.772 33.333 0.00 0.00 0.00 0.86
1859 4639 4.327982 TTCCTGACTGAGTGAACTTCAG 57.672 45.455 0.00 4.36 37.50 3.02
2017 4797 1.501292 CGTCGGCACAATGATTGCA 59.499 52.632 4.84 0.00 42.12 4.08
2035 4815 5.507985 GCTGGCCATTAAACAATCATACTCC 60.508 44.000 5.51 0.00 0.00 3.85
2077 4857 8.812147 TGATAGCCTTAACTATAACATCAACG 57.188 34.615 0.00 0.00 32.95 4.10
2437 5227 2.048444 AGGGCATGCTCATAACACAG 57.952 50.000 22.09 0.00 0.00 3.66
2805 5665 2.119457 GTCTTTCAACTTTTGCGGCAG 58.881 47.619 1.67 0.00 0.00 4.85
2848 5709 4.925054 ACAATGTCAAGAAAATGGAATGCG 59.075 37.500 0.00 0.00 0.00 4.73
2855 5716 6.573664 TCCAGGTACAATGTCAAGAAAATG 57.426 37.500 0.00 0.00 0.00 2.32
2865 5726 4.804261 GCTCACTTCTTCCAGGTACAATGT 60.804 45.833 0.00 0.00 0.00 2.71
2866 5727 3.686726 GCTCACTTCTTCCAGGTACAATG 59.313 47.826 0.00 0.00 0.00 2.82
2867 5728 3.584848 AGCTCACTTCTTCCAGGTACAAT 59.415 43.478 0.00 0.00 0.00 2.71
2887 5748 0.899717 TGGGTCCTCAAAATGGCAGC 60.900 55.000 0.00 0.00 0.00 5.25
2911 5772 7.665145 TGATAACAACAAGATTCCACAGATTCA 59.335 33.333 0.00 0.00 0.00 2.57
2956 5817 8.668353 TGACATGATAAGAAAGAGAAAAATCCG 58.332 33.333 0.00 0.00 0.00 4.18
3109 7363 6.097554 ACAGCTATCAGCAACAGTCTACTATT 59.902 38.462 0.38 0.00 45.56 1.73
3110 7364 5.596361 ACAGCTATCAGCAACAGTCTACTAT 59.404 40.000 0.38 0.00 45.56 2.12
3111 7365 4.950475 ACAGCTATCAGCAACAGTCTACTA 59.050 41.667 0.38 0.00 45.56 1.82
3137 7391 2.046988 CGTGATGCAGCCACAGGA 60.047 61.111 18.33 0.00 34.36 3.86
3139 7393 3.129502 CCCGTGATGCAGCCACAG 61.130 66.667 18.33 9.62 34.36 3.66
3195 7449 2.158957 TCAGATTACCTGATTCGTGGCC 60.159 50.000 0.00 0.00 46.38 5.36
3224 7478 2.069273 CACGCACTCGGATTCTTCTTT 58.931 47.619 0.00 0.00 40.69 2.52
3447 7701 2.435372 TGAGCCACCACTCTTTTGTT 57.565 45.000 0.00 0.00 37.58 2.83
3448 7702 2.664402 ATGAGCCACCACTCTTTTGT 57.336 45.000 0.00 0.00 37.58 2.83
3449 7703 3.411446 TGTATGAGCCACCACTCTTTTG 58.589 45.455 0.00 0.00 37.58 2.44
3450 7704 3.788227 TGTATGAGCCACCACTCTTTT 57.212 42.857 0.00 0.00 37.58 2.27
3476 7735 0.918619 CTGCTTTTATGCGTGCATGC 59.081 50.000 24.20 24.20 37.82 4.06
3528 7796 7.346751 ACTAGTCAATTGTTGTTGTGGAAAT 57.653 32.000 5.13 0.00 0.00 2.17
3532 7800 4.739716 GCAACTAGTCAATTGTTGTTGTGG 59.260 41.667 22.52 11.28 43.77 4.17
3541 7809 3.057315 CCAAGGTGGCAACTAGTCAATTG 60.057 47.826 4.97 0.00 30.62 2.32
3542 7810 3.157087 CCAAGGTGGCAACTAGTCAATT 58.843 45.455 4.97 0.00 30.62 2.32
3543 7811 2.375174 TCCAAGGTGGCAACTAGTCAAT 59.625 45.455 4.97 0.00 37.47 2.57
3573 7844 9.178758 GTTTGATTTGATTGGAGAATAGGTAGT 57.821 33.333 0.00 0.00 0.00 2.73
3574 7845 9.177608 TGTTTGATTTGATTGGAGAATAGGTAG 57.822 33.333 0.00 0.00 0.00 3.18
3575 7846 9.527157 TTGTTTGATTTGATTGGAGAATAGGTA 57.473 29.630 0.00 0.00 0.00 3.08
3576 7847 8.421249 TTGTTTGATTTGATTGGAGAATAGGT 57.579 30.769 0.00 0.00 0.00 3.08
3620 7930 7.864379 GCCATACTATGTCAAAAGATGGAAATG 59.136 37.037 10.03 0.00 35.41 2.32
3662 7978 6.096673 GGAAACCTCTGGAAGATCTATCTC 57.903 45.833 0.00 0.00 45.62 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.