Multiple sequence alignment - TraesCS3D01G228800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G228800 chr3D 100.000 5879 0 0 1 5879 311637798 311643676 0.000000e+00 10857
1 TraesCS3D01G228800 chr3D 92.659 722 40 7 1 709 110279757 110280478 0.000000e+00 1027
2 TraesCS3D01G228800 chr3D 88.125 160 7 8 2484 2633 458436376 458436219 4.680000e-41 180
3 TraesCS3D01G228800 chr3A 95.635 3276 106 19 2622 5879 420805947 420802691 0.000000e+00 5223
4 TraesCS3D01G228800 chr3A 93.402 1743 61 17 768 2482 420807670 420805954 0.000000e+00 2532
5 TraesCS3D01G228800 chr3A 92.149 726 44 8 1 713 677167030 677166305 0.000000e+00 1013
6 TraesCS3D01G228800 chr3A 90.582 722 52 7 1 709 435776822 435776104 0.000000e+00 942
7 TraesCS3D01G228800 chr3A 85.057 174 11 11 2473 2633 130848110 130848281 4.710000e-36 163
8 TraesCS3D01G228800 chr3B 94.202 3294 108 28 2632 5879 409875032 409871776 0.000000e+00 4948
9 TraesCS3D01G228800 chr3B 93.720 1640 76 13 712 2342 409876958 409875337 0.000000e+00 2433
10 TraesCS3D01G228800 chr3B 95.205 146 7 0 2342 2487 409875175 409875030 1.270000e-56 231
11 TraesCS3D01G228800 chr3B 87.662 154 13 4 2481 2632 431580185 431580334 2.180000e-39 174
12 TraesCS3D01G228800 chr5D 95.152 722 21 5 1 709 8404202 8404922 0.000000e+00 1127
13 TraesCS3D01G228800 chr5D 93.463 719 34 7 1 707 321389639 321390356 0.000000e+00 1055
14 TraesCS3D01G228800 chr5D 92.160 727 37 7 1 707 374397372 374398098 0.000000e+00 1009
15 TraesCS3D01G228800 chr5D 88.742 151 13 3 2485 2633 42065418 42065270 1.300000e-41 182
16 TraesCS3D01G228800 chr2A 91.365 718 45 8 1 704 79465761 79466475 0.000000e+00 966
17 TraesCS3D01G228800 chr1D 90.997 722 52 5 1 709 245988064 245988785 0.000000e+00 961
18 TraesCS3D01G228800 chr1A 90.582 722 54 5 1 709 98988725 98988005 0.000000e+00 944
19 TraesCS3D01G228800 chr2D 83.196 726 91 23 1 710 50994505 50993795 2.310000e-178 636
20 TraesCS3D01G228800 chr2D 85.802 162 12 7 2485 2637 493778162 493778003 1.700000e-35 161
21 TraesCS3D01G228800 chr7B 91.595 464 19 5 5384 5845 688573340 688572895 1.800000e-174 623
22 TraesCS3D01G228800 chr7D 87.821 156 13 4 2483 2633 203358889 203358735 1.680000e-40 178
23 TraesCS3D01G228800 chr6B 88.079 151 14 3 2485 2633 253558569 253558421 6.060000e-40 176
24 TraesCS3D01G228800 chr5A 87.742 155 13 3 2485 2633 55029304 55029458 6.060000e-40 176
25 TraesCS3D01G228800 chr1B 85.714 154 19 3 2485 2635 408270857 408271010 6.100000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G228800 chr3D 311637798 311643676 5878 False 10857.000000 10857 100.000000 1 5879 1 chr3D.!!$F2 5878
1 TraesCS3D01G228800 chr3D 110279757 110280478 721 False 1027.000000 1027 92.659000 1 709 1 chr3D.!!$F1 708
2 TraesCS3D01G228800 chr3A 420802691 420807670 4979 True 3877.500000 5223 94.518500 768 5879 2 chr3A.!!$R3 5111
3 TraesCS3D01G228800 chr3A 677166305 677167030 725 True 1013.000000 1013 92.149000 1 713 1 chr3A.!!$R2 712
4 TraesCS3D01G228800 chr3A 435776104 435776822 718 True 942.000000 942 90.582000 1 709 1 chr3A.!!$R1 708
5 TraesCS3D01G228800 chr3B 409871776 409876958 5182 True 2537.333333 4948 94.375667 712 5879 3 chr3B.!!$R1 5167
6 TraesCS3D01G228800 chr5D 8404202 8404922 720 False 1127.000000 1127 95.152000 1 709 1 chr5D.!!$F1 708
7 TraesCS3D01G228800 chr5D 321389639 321390356 717 False 1055.000000 1055 93.463000 1 707 1 chr5D.!!$F2 706
8 TraesCS3D01G228800 chr5D 374397372 374398098 726 False 1009.000000 1009 92.160000 1 707 1 chr5D.!!$F3 706
9 TraesCS3D01G228800 chr2A 79465761 79466475 714 False 966.000000 966 91.365000 1 704 1 chr2A.!!$F1 703
10 TraesCS3D01G228800 chr1D 245988064 245988785 721 False 961.000000 961 90.997000 1 709 1 chr1D.!!$F1 708
11 TraesCS3D01G228800 chr1A 98988005 98988725 720 True 944.000000 944 90.582000 1 709 1 chr1A.!!$R1 708
12 TraesCS3D01G228800 chr2D 50993795 50994505 710 True 636.000000 636 83.196000 1 710 1 chr2D.!!$R1 709

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
909 937 0.176219 ACGTTCGTCAGTTGTTGGGA 59.824 50.000 0.00 0.00 0.00 4.37 F
1933 2002 1.068474 CGTGATTCTGTCGGTCCAAC 58.932 55.000 0.00 0.00 0.00 3.77 F
2199 2276 1.299926 GCCGGCGTATACTCCACAG 60.300 63.158 12.58 1.58 0.00 3.66 F
3093 3347 1.004277 GGGCAACTTCCACCTCATGTA 59.996 52.381 0.00 0.00 0.00 2.29 F
3192 3446 2.027192 ACATGGTGGATGGTGTGTCTAC 60.027 50.000 0.00 0.00 36.23 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2814 3067 0.613260 TAGTGGAAACAGAGGCGCAT 59.387 50.000 10.83 0.00 44.46 4.73 R
2816 3069 1.019805 GGTAGTGGAAACAGAGGCGC 61.020 60.000 0.00 0.00 44.46 6.53 R
3180 3434 1.544691 GGTCGACAGTAGACACACCAT 59.455 52.381 18.91 0.00 40.20 3.55 R
4750 5021 0.251297 TGAAGAACACCATGGCCCAG 60.251 55.000 13.04 1.76 0.00 4.45 R
4957 5229 3.160269 CCAGCAAAAGGGAATGAACTCT 58.840 45.455 0.00 0.00 0.00 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 108 0.306533 TTCTTTGCTTTCACGCCGAC 59.693 50.000 0.00 0.00 0.00 4.79
500 519 5.382616 GAAGAAAACCTTGACTTTCCCCTA 58.617 41.667 0.00 0.00 34.68 3.53
622 642 4.097828 GCGATTTTCGGCGTCCTA 57.902 55.556 6.85 0.00 40.84 2.94
626 646 1.153229 ATTTTCGGCGTCCTAGGGC 60.153 57.895 9.46 5.99 0.00 5.19
677 705 0.250727 CGAAAAAGTGGCCTGAGGGA 60.251 55.000 3.32 0.00 33.58 4.20
710 738 1.938926 GCGGCTGGAGATGCTCTAATC 60.939 57.143 0.00 0.00 0.00 1.75
720 748 7.661968 TGGAGATGCTCTAATCACATAACTAC 58.338 38.462 0.00 0.00 0.00 2.73
723 751 5.196341 TGCTCTAATCACATAACTACGGG 57.804 43.478 0.00 0.00 0.00 5.28
724 752 3.988517 GCTCTAATCACATAACTACGGGC 59.011 47.826 0.00 0.00 0.00 6.13
729 757 3.688694 TCACATAACTACGGGCTGTTT 57.311 42.857 3.31 0.00 0.00 2.83
739 767 1.134936 ACGGGCTGTTTTGGTTTTGAC 60.135 47.619 0.00 0.00 0.00 3.18
740 768 1.566404 GGGCTGTTTTGGTTTTGACG 58.434 50.000 0.00 0.00 0.00 4.35
743 771 2.223947 GGCTGTTTTGGTTTTGACGGAT 60.224 45.455 0.00 0.00 0.00 4.18
746 774 3.190874 TGTTTTGGTTTTGACGGATTGC 58.809 40.909 0.00 0.00 0.00 3.56
747 775 2.126914 TTTGGTTTTGACGGATTGCG 57.873 45.000 0.00 0.00 0.00 4.85
751 779 1.664874 GGTTTTGACGGATTGCGGTTC 60.665 52.381 1.84 0.00 0.00 3.62
762 790 4.473199 GGATTGCGGTTCTAGTTTTTGTC 58.527 43.478 0.00 0.00 0.00 3.18
778 806 6.719370 AGTTTTTGTCATATACTCAAAGGCCA 59.281 34.615 5.01 0.00 33.61 5.36
838 866 9.886132 AAAAGTTTATAGATTCGGCTTCTAGAA 57.114 29.630 4.81 4.81 0.00 2.10
847 875 1.003108 GGCTTCTAGAACGCAGCTTC 58.997 55.000 20.95 3.14 32.52 3.86
857 885 0.954452 ACGCAGCTTCTTTCCAAAGG 59.046 50.000 0.00 0.00 36.67 3.11
861 889 2.233271 CAGCTTCTTTCCAAAGGCTCA 58.767 47.619 0.00 0.00 33.26 4.26
872 900 3.254657 TCCAAAGGCTCAAATAAACCACG 59.745 43.478 0.00 0.00 0.00 4.94
879 907 5.300792 AGGCTCAAATAAACCACGAAAGAAA 59.699 36.000 0.00 0.00 0.00 2.52
888 916 1.885887 CCACGAAAGAAATGGCCTGAA 59.114 47.619 3.32 0.00 0.00 3.02
889 917 2.095059 CCACGAAAGAAATGGCCTGAAG 60.095 50.000 3.32 0.00 0.00 3.02
909 937 0.176219 ACGTTCGTCAGTTGTTGGGA 59.824 50.000 0.00 0.00 0.00 4.37
942 970 3.439540 CCATCGCACCCAAACCCG 61.440 66.667 0.00 0.00 0.00 5.28
1018 1046 2.782222 ATGATGTCCCCGACGACCG 61.782 63.158 0.00 0.00 34.95 4.79
1090 1130 1.749334 CTCATCCTCTACCCACCGCC 61.749 65.000 0.00 0.00 0.00 6.13
1198 1238 2.825836 CGCCCCAATCTGACCAGC 60.826 66.667 0.00 0.00 0.00 4.85
1201 1241 1.379044 CCCCAATCTGACCAGCACC 60.379 63.158 0.00 0.00 0.00 5.01
1427 1467 4.873129 CCCGACGGCGTCATCCTG 62.873 72.222 35.62 20.62 35.23 3.86
1623 1663 1.937899 AGGTAACGCCGATACATTTGC 59.062 47.619 6.85 0.00 43.70 3.68
1655 1696 5.867174 GCTATGAAAGGTTAAAATTGCCGTT 59.133 36.000 0.00 0.00 0.00 4.44
1656 1697 6.183360 GCTATGAAAGGTTAAAATTGCCGTTG 60.183 38.462 0.00 0.00 0.00 4.10
1773 1841 6.088883 GGTTTTGCGTTATGAAAATGGTACTG 59.911 38.462 0.00 0.00 0.00 2.74
1846 1915 6.144078 TCGTTGCTGAATAGAGCTATTGTA 57.856 37.500 7.44 0.00 39.90 2.41
1847 1916 5.977725 TCGTTGCTGAATAGAGCTATTGTAC 59.022 40.000 7.44 0.00 39.90 2.90
1870 1939 5.175090 TGCAGTTATCGTGACTCATAGAG 57.825 43.478 0.00 0.00 35.52 2.43
1933 2002 1.068474 CGTGATTCTGTCGGTCCAAC 58.932 55.000 0.00 0.00 0.00 3.77
1946 2015 2.795329 GGTCCAACAGGTGATGAACAT 58.205 47.619 0.00 0.00 0.00 2.71
2077 2147 4.634004 TGATGGTGTAATTTGGTAGCTTCG 59.366 41.667 0.00 0.00 0.00 3.79
2184 2261 4.060038 ACTGATACATTCTGGTTAGCCG 57.940 45.455 0.00 0.00 37.67 5.52
2199 2276 1.299926 GCCGGCGTATACTCCACAG 60.300 63.158 12.58 1.58 0.00 3.66
2312 2389 2.195922 GCTTATGCCGATGCCTTTTTG 58.804 47.619 0.00 0.00 36.33 2.44
2419 2658 4.836125 TGCTTGTTTCAATTCTCTGGTC 57.164 40.909 0.00 0.00 0.00 4.02
2494 2747 9.751542 GATGATATTTGTATATTACTCCCTCCG 57.248 37.037 0.00 0.00 0.00 4.63
2495 2748 8.660295 TGATATTTGTATATTACTCCCTCCGT 57.340 34.615 0.00 0.00 0.00 4.69
2496 2749 9.096823 TGATATTTGTATATTACTCCCTCCGTT 57.903 33.333 0.00 0.00 0.00 4.44
2497 2750 9.583765 GATATTTGTATATTACTCCCTCCGTTC 57.416 37.037 0.00 0.00 0.00 3.95
2498 2751 5.796424 TTGTATATTACTCCCTCCGTTCC 57.204 43.478 0.00 0.00 0.00 3.62
2499 2752 5.070823 TGTATATTACTCCCTCCGTTCCT 57.929 43.478 0.00 0.00 0.00 3.36
2500 2753 6.204852 TGTATATTACTCCCTCCGTTCCTA 57.795 41.667 0.00 0.00 0.00 2.94
2501 2754 6.613699 TGTATATTACTCCCTCCGTTCCTAA 58.386 40.000 0.00 0.00 0.00 2.69
2502 2755 7.068702 TGTATATTACTCCCTCCGTTCCTAAA 58.931 38.462 0.00 0.00 0.00 1.85
2503 2756 7.731688 TGTATATTACTCCCTCCGTTCCTAAAT 59.268 37.037 0.00 0.00 0.00 1.40
2504 2757 9.247861 GTATATTACTCCCTCCGTTCCTAAATA 57.752 37.037 0.00 0.00 0.00 1.40
2505 2758 8.731591 ATATTACTCCCTCCGTTCCTAAATAA 57.268 34.615 0.00 0.00 0.00 1.40
2506 2759 6.475596 TTACTCCCTCCGTTCCTAAATAAG 57.524 41.667 0.00 0.00 0.00 1.73
2507 2760 4.359996 ACTCCCTCCGTTCCTAAATAAGT 58.640 43.478 0.00 0.00 0.00 2.24
2508 2761 4.405036 ACTCCCTCCGTTCCTAAATAAGTC 59.595 45.833 0.00 0.00 0.00 3.01
2509 2762 4.617593 TCCCTCCGTTCCTAAATAAGTCT 58.382 43.478 0.00 0.00 0.00 3.24
2510 2763 5.028131 TCCCTCCGTTCCTAAATAAGTCTT 58.972 41.667 0.00 0.00 0.00 3.01
2511 2764 5.486419 TCCCTCCGTTCCTAAATAAGTCTTT 59.514 40.000 0.00 0.00 0.00 2.52
2512 2765 6.013119 TCCCTCCGTTCCTAAATAAGTCTTTT 60.013 38.462 0.00 0.00 0.00 2.27
2513 2766 6.657966 CCCTCCGTTCCTAAATAAGTCTTTTT 59.342 38.462 0.00 0.00 0.00 1.94
2514 2767 7.825761 CCCTCCGTTCCTAAATAAGTCTTTTTA 59.174 37.037 0.00 0.00 0.00 1.52
2515 2768 8.880750 CCTCCGTTCCTAAATAAGTCTTTTTAG 58.119 37.037 14.23 14.23 35.92 1.85
2516 2769 9.649167 CTCCGTTCCTAAATAAGTCTTTTTAGA 57.351 33.333 18.77 9.52 37.53 2.10
2517 2770 9.649167 TCCGTTCCTAAATAAGTCTTTTTAGAG 57.351 33.333 18.77 13.04 37.53 2.43
2518 2771 9.649167 CCGTTCCTAAATAAGTCTTTTTAGAGA 57.351 33.333 18.77 14.23 37.53 3.10
2530 2783 9.799106 AAGTCTTTTTAGAGATTTCAAGATGGA 57.201 29.630 0.00 0.00 0.00 3.41
2531 2784 9.225436 AGTCTTTTTAGAGATTTCAAGATGGAC 57.775 33.333 0.00 0.00 0.00 4.02
2532 2785 9.225436 GTCTTTTTAGAGATTTCAAGATGGACT 57.775 33.333 0.00 0.00 0.00 3.85
2539 2792 8.311395 AGAGATTTCAAGATGGACTACATACA 57.689 34.615 0.00 0.00 40.72 2.29
2540 2793 8.420222 AGAGATTTCAAGATGGACTACATACAG 58.580 37.037 0.00 0.00 40.72 2.74
2541 2794 8.311395 AGATTTCAAGATGGACTACATACAGA 57.689 34.615 0.00 0.00 40.72 3.41
2542 2795 8.932610 AGATTTCAAGATGGACTACATACAGAT 58.067 33.333 0.00 0.00 40.72 2.90
2543 2796 8.899427 ATTTCAAGATGGACTACATACAGATG 57.101 34.615 0.00 0.00 40.72 2.90
2545 2798 8.533569 TTCAAGATGGACTACATACAGATGTA 57.466 34.615 0.00 0.00 44.77 2.29
2546 2799 8.712228 TCAAGATGGACTACATACAGATGTAT 57.288 34.615 0.00 0.00 45.42 2.29
2547 2800 9.807921 TCAAGATGGACTACATACAGATGTATA 57.192 33.333 5.21 0.00 45.42 1.47
2585 2838 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2586 2839 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
2587 2840 5.412594 GTGTAGATTCACTCATTTTGCTCCA 59.587 40.000 0.00 0.00 35.68 3.86
2588 2841 6.094603 GTGTAGATTCACTCATTTTGCTCCAT 59.905 38.462 0.00 0.00 35.68 3.41
2589 2842 7.280876 GTGTAGATTCACTCATTTTGCTCCATA 59.719 37.037 0.00 0.00 35.68 2.74
2590 2843 7.994911 TGTAGATTCACTCATTTTGCTCCATAT 59.005 33.333 0.00 0.00 0.00 1.78
2591 2844 7.893124 AGATTCACTCATTTTGCTCCATATT 57.107 32.000 0.00 0.00 0.00 1.28
2592 2845 7.713750 AGATTCACTCATTTTGCTCCATATTG 58.286 34.615 0.00 0.00 0.00 1.90
2593 2846 5.840243 TCACTCATTTTGCTCCATATTGG 57.160 39.130 0.00 0.00 39.43 3.16
2594 2847 5.508567 TCACTCATTTTGCTCCATATTGGA 58.491 37.500 0.00 0.00 45.98 3.53
2628 2881 8.959705 AAAGACTTATATTTAGAAACGGAGGG 57.040 34.615 0.00 0.00 0.00 4.30
2629 2882 7.909485 AGACTTATATTTAGAAACGGAGGGA 57.091 36.000 0.00 0.00 0.00 4.20
2630 2883 7.953752 AGACTTATATTTAGAAACGGAGGGAG 58.046 38.462 0.00 0.00 0.00 4.30
2631 2884 7.564292 AGACTTATATTTAGAAACGGAGGGAGT 59.436 37.037 0.00 0.00 0.00 3.85
2636 2889 5.549742 TTTAGAAACGGAGGGAGTACAAA 57.450 39.130 0.00 0.00 0.00 2.83
2688 2941 9.522804 TTTTGTTTTCAGCGTTCTAATGTTTAT 57.477 25.926 0.00 0.00 0.00 1.40
2724 2977 4.550422 TCGCATAGTATTCTCATCAGCAC 58.450 43.478 0.00 0.00 0.00 4.40
2814 3067 5.059161 CACTGGATTTTCTTCTGACACTCA 58.941 41.667 0.00 0.00 0.00 3.41
2816 3069 5.704515 ACTGGATTTTCTTCTGACACTCATG 59.295 40.000 0.00 0.00 0.00 3.07
2851 3105 4.262377 CCACTACCTGCTAGATTGATGGAG 60.262 50.000 0.00 0.00 0.00 3.86
3015 3269 5.391523 CCTCGCAGAAGCTATATCTGACTAC 60.392 48.000 16.44 0.00 45.74 2.73
3093 3347 1.004277 GGGCAACTTCCACCTCATGTA 59.996 52.381 0.00 0.00 0.00 2.29
3180 3434 6.823286 TCTATTTCCTTATGACATGGTGGA 57.177 37.500 0.00 0.27 0.00 4.02
3192 3446 2.027192 ACATGGTGGATGGTGTGTCTAC 60.027 50.000 0.00 0.00 36.23 2.59
3265 3519 5.067153 CAGTGTTATGTTCCCAAGTTCAACA 59.933 40.000 0.00 0.00 34.61 3.33
3367 3621 5.664006 TGCTGGTATACTGTACCCACTTTAT 59.336 40.000 2.25 0.00 36.79 1.40
3971 4231 5.367945 TTCCCCATTACCAGTATTGACTC 57.632 43.478 2.12 0.00 31.73 3.36
4022 4282 9.425893 CTTCATCGTGCACTTATTTTATGTTAG 57.574 33.333 16.19 0.00 0.00 2.34
4024 4284 9.589111 TCATCGTGCACTTATTTTATGTTAGTA 57.411 29.630 16.19 0.00 0.00 1.82
4089 4350 7.286775 TGAGGCCTACAAACTTCTTTATTTGTT 59.713 33.333 4.42 0.00 44.61 2.83
4282 4543 4.942761 AAAATGCTGTGTGGTCAATTCT 57.057 36.364 0.00 0.00 0.00 2.40
4297 4558 3.817084 TCAATTCTCCACACAGCTTGAAG 59.183 43.478 3.37 0.00 0.00 3.02
4338 4599 2.172505 TGACCCTATGTTGTATGGCCTG 59.827 50.000 3.32 0.00 0.00 4.85
4402 4663 6.335471 TGTGCAACTGATTTCATTTCTGAT 57.665 33.333 0.00 0.00 38.04 2.90
4403 4664 6.751157 TGTGCAACTGATTTCATTTCTGATT 58.249 32.000 0.00 0.00 38.04 2.57
4405 4666 6.309737 GTGCAACTGATTTCATTTCTGATTCC 59.690 38.462 0.00 0.00 0.00 3.01
4448 4713 7.873739 AAGCTATTTGTATTTTGCAGTGTTC 57.126 32.000 0.00 0.00 0.00 3.18
4523 4788 3.507162 TCACATGATCACAGGGTGTTT 57.493 42.857 0.00 0.00 36.93 2.83
4551 4816 4.207165 TCTTTTGGCAGGGATACATTAGC 58.793 43.478 0.00 0.00 39.74 3.09
4791 5062 1.308998 AAACACCAGAAGAAGCCGTG 58.691 50.000 0.00 0.00 0.00 4.94
4833 5104 4.469227 ACAAGGAGCTTGAGATATGACACT 59.531 41.667 0.00 0.00 43.42 3.55
4951 5223 7.764443 TCAGCTCAACACCTTCTACATTATTAC 59.236 37.037 0.00 0.00 0.00 1.89
4952 5224 7.766278 CAGCTCAACACCTTCTACATTATTACT 59.234 37.037 0.00 0.00 0.00 2.24
4953 5225 8.322091 AGCTCAACACCTTCTACATTATTACTT 58.678 33.333 0.00 0.00 0.00 2.24
4954 5226 9.595823 GCTCAACACCTTCTACATTATTACTTA 57.404 33.333 0.00 0.00 0.00 2.24
5167 5441 4.365723 CTTGCATTGGTTATCATTCCAGC 58.634 43.478 0.00 0.00 35.05 4.85
5211 5485 5.758784 GGTATTGCAGTCTTATACCTTGTCC 59.241 44.000 14.67 0.00 40.29 4.02
5344 5618 5.010922 AGTGCTTTAAATTGAATCAGTGCCA 59.989 36.000 0.00 0.00 0.00 4.92
5350 5624 2.307496 TTGAATCAGTGCCACCCATT 57.693 45.000 0.00 0.00 0.00 3.16
5435 5716 8.964150 GTTTTAACATTTCTGTATTGCTCGTTT 58.036 29.630 0.00 0.00 33.36 3.60
5467 5749 1.205417 CTGGGTGAAAATGGATGGTGC 59.795 52.381 0.00 0.00 0.00 5.01
5471 5753 1.273048 GTGAAAATGGATGGTGCAGCA 59.727 47.619 22.56 22.56 0.00 4.41
5473 5755 2.568062 TGAAAATGGATGGTGCAGCAAT 59.432 40.909 24.18 9.34 0.00 3.56
5645 5928 6.945218 TCCCTTTAACGCTTATAAACTGGTA 58.055 36.000 0.00 0.00 0.00 3.25
5646 5929 6.818142 TCCCTTTAACGCTTATAAACTGGTAC 59.182 38.462 0.00 0.00 0.00 3.34
5647 5930 6.820152 CCCTTTAACGCTTATAAACTGGTACT 59.180 38.462 0.00 0.00 0.00 2.73
5648 5931 7.201582 CCCTTTAACGCTTATAAACTGGTACTG 60.202 40.741 0.00 0.00 0.00 2.74
5649 5932 7.332678 CCTTTAACGCTTATAAACTGGTACTGT 59.667 37.037 0.00 0.00 44.05 3.55
5650 5933 9.357652 CTTTAACGCTTATAAACTGGTACTGTA 57.642 33.333 0.00 0.00 40.38 2.74
5729 6029 4.262678 GGTGCTGAGTCTTAGGTTTTCTCT 60.263 45.833 0.00 0.00 0.00 3.10
5741 6041 7.442666 TCTTAGGTTTTCTCTCTTTTCTTCTGC 59.557 37.037 0.00 0.00 0.00 4.26
5790 6094 5.519206 GTGGTCCTAAGTAACTTATTGCGAG 59.481 44.000 0.00 0.00 0.00 5.03
5827 6131 6.476380 GTCTGAAGTTTGTGAATGCAAATGAA 59.524 34.615 0.00 0.00 40.01 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
710 738 3.119990 CCAAAACAGCCCGTAGTTATGTG 60.120 47.826 0.00 0.00 0.00 3.21
720 748 1.566404 GTCAAAACCAAAACAGCCCG 58.434 50.000 0.00 0.00 0.00 6.13
723 751 2.570442 TCCGTCAAAACCAAAACAGC 57.430 45.000 0.00 0.00 0.00 4.40
724 752 3.245048 GCAATCCGTCAAAACCAAAACAG 59.755 43.478 0.00 0.00 0.00 3.16
729 757 0.312416 CCGCAATCCGTCAAAACCAA 59.688 50.000 0.00 0.00 34.38 3.67
739 767 3.058501 ACAAAAACTAGAACCGCAATCCG 60.059 43.478 0.00 0.00 0.00 4.18
740 768 4.023536 TGACAAAAACTAGAACCGCAATCC 60.024 41.667 0.00 0.00 0.00 3.01
743 771 6.811253 ATATGACAAAAACTAGAACCGCAA 57.189 33.333 0.00 0.00 0.00 4.85
746 774 8.697846 TGAGTATATGACAAAAACTAGAACCG 57.302 34.615 0.00 0.00 0.00 4.44
751 779 8.398665 GGCCTTTGAGTATATGACAAAAACTAG 58.601 37.037 0.00 0.00 34.03 2.57
762 790 7.337942 AGAAAGAACTTGGCCTTTGAGTATATG 59.662 37.037 3.32 0.00 33.23 1.78
778 806 4.657814 TGGATTGGGCTAGAAAGAACTT 57.342 40.909 0.00 0.00 0.00 2.66
823 851 1.855360 CTGCGTTCTAGAAGCCGAATC 59.145 52.381 17.01 3.14 0.00 2.52
838 866 0.954452 CCTTTGGAAAGAAGCTGCGT 59.046 50.000 0.47 0.00 38.28 5.24
847 875 5.696270 GTGGTTTATTTGAGCCTTTGGAAAG 59.304 40.000 0.00 0.00 35.79 2.62
857 885 6.089417 CCATTTCTTTCGTGGTTTATTTGAGC 59.911 38.462 0.00 0.00 0.00 4.26
861 889 5.011635 AGGCCATTTCTTTCGTGGTTTATTT 59.988 36.000 5.01 0.00 35.44 1.40
872 900 2.814336 ACGTCTTCAGGCCATTTCTTTC 59.186 45.455 5.01 0.00 0.00 2.62
879 907 0.389948 GACGAACGTCTTCAGGCCAT 60.390 55.000 18.12 0.00 41.57 4.40
888 916 1.567504 CCAACAACTGACGAACGTCT 58.432 50.000 23.90 6.16 44.80 4.18
889 917 0.580104 CCCAACAACTGACGAACGTC 59.420 55.000 18.48 18.48 44.77 4.34
909 937 2.936032 GGAGGGCAGAACAGGGGT 60.936 66.667 0.00 0.00 0.00 4.95
936 964 2.837326 GGGGTGGGAGTTCGGGTTT 61.837 63.158 0.00 0.00 0.00 3.27
942 970 2.439245 GGTTGGGGGTGGGAGTTC 59.561 66.667 0.00 0.00 0.00 3.01
1198 1238 3.274586 CTGGCGATGCGATGGGTG 61.275 66.667 0.00 0.00 0.00 4.61
1201 1241 0.811219 TTCTTCTGGCGATGCGATGG 60.811 55.000 0.00 0.00 0.00 3.51
1427 1467 1.546834 GCGTGAGTATGTCCGAGAAC 58.453 55.000 0.00 0.00 0.00 3.01
1623 1663 6.417191 TTTAACCTTTCATAGCTAAGCACG 57.583 37.500 0.00 0.00 0.00 5.34
1663 1704 8.996024 AACCACCAATGCTAATTTATTACAAC 57.004 30.769 0.00 0.00 0.00 3.32
1773 1841 4.282195 TGGTAACCAACAATTTCATCCCAC 59.718 41.667 0.00 0.00 0.00 4.61
1846 1915 3.876274 ATGAGTCACGATAACTGCAGT 57.124 42.857 15.25 15.25 0.00 4.40
1847 1916 5.175090 TCTATGAGTCACGATAACTGCAG 57.825 43.478 13.48 13.48 0.00 4.41
1905 1974 3.309388 CGACAGAATCACGACAACTTCT 58.691 45.455 0.00 0.00 0.00 2.85
1909 1978 1.719780 GACCGACAGAATCACGACAAC 59.280 52.381 0.00 0.00 0.00 3.32
1933 2002 6.662414 AATACACGTAATGTTCATCACCTG 57.338 37.500 0.00 0.00 43.19 4.00
1995 2064 1.801771 CAACCATGCAGCCATTGTTTG 59.198 47.619 0.00 0.00 35.75 2.93
1996 2065 1.693062 TCAACCATGCAGCCATTGTTT 59.307 42.857 0.00 0.00 35.75 2.83
2068 2138 3.718815 CAGAAATAGTCCCGAAGCTACC 58.281 50.000 0.00 0.00 0.00 3.18
2077 2147 3.558109 GGCATAGAGGCAGAAATAGTCCC 60.558 52.174 0.00 0.00 43.51 4.46
2184 2261 2.094390 TGTGAACTGTGGAGTATACGCC 60.094 50.000 17.96 17.96 36.28 5.68
2199 2276 4.555348 TTACATTCCCAACGTTGTGAAC 57.445 40.909 25.14 0.00 27.67 3.18
2338 2415 6.379703 AGGAGAGCATGTGGTAATAGCTATAG 59.620 42.308 6.68 0.00 35.36 1.31
2388 2627 7.553334 AGAATTGAAACAAGCATTAGCATCAT 58.447 30.769 0.00 0.00 45.49 2.45
2419 2658 9.001542 TGCTGGAAGATTTAAATTTTGAATTGG 57.998 29.630 8.58 0.00 34.07 3.16
2485 2738 4.359996 ACTTATTTAGGAACGGAGGGAGT 58.640 43.478 0.00 0.00 0.00 3.85
2486 2739 4.650131 AGACTTATTTAGGAACGGAGGGAG 59.350 45.833 0.00 0.00 0.00 4.30
2487 2740 4.617593 AGACTTATTTAGGAACGGAGGGA 58.382 43.478 0.00 0.00 0.00 4.20
2488 2741 5.354842 AAGACTTATTTAGGAACGGAGGG 57.645 43.478 0.00 0.00 0.00 4.30
2489 2742 7.683437 AAAAAGACTTATTTAGGAACGGAGG 57.317 36.000 0.00 0.00 0.00 4.30
2490 2743 9.649167 TCTAAAAAGACTTATTTAGGAACGGAG 57.351 33.333 19.02 5.32 38.85 4.63
2491 2744 9.649167 CTCTAAAAAGACTTATTTAGGAACGGA 57.351 33.333 19.02 7.67 38.85 4.69
2492 2745 9.649167 TCTCTAAAAAGACTTATTTAGGAACGG 57.351 33.333 19.02 11.02 38.85 4.44
2504 2757 9.799106 TCCATCTTGAAATCTCTAAAAAGACTT 57.201 29.630 0.00 0.00 0.00 3.01
2505 2758 9.225436 GTCCATCTTGAAATCTCTAAAAAGACT 57.775 33.333 0.00 0.00 0.00 3.24
2506 2759 9.225436 AGTCCATCTTGAAATCTCTAAAAAGAC 57.775 33.333 0.00 0.00 0.00 3.01
2513 2766 9.421399 TGTATGTAGTCCATCTTGAAATCTCTA 57.579 33.333 0.00 0.00 34.86 2.43
2514 2767 8.311395 TGTATGTAGTCCATCTTGAAATCTCT 57.689 34.615 0.00 0.00 34.86 3.10
2515 2768 8.417106 TCTGTATGTAGTCCATCTTGAAATCTC 58.583 37.037 0.00 0.00 34.86 2.75
2516 2769 8.311395 TCTGTATGTAGTCCATCTTGAAATCT 57.689 34.615 0.00 0.00 34.86 2.40
2517 2770 8.986847 CATCTGTATGTAGTCCATCTTGAAATC 58.013 37.037 0.00 0.00 34.86 2.17
2518 2771 8.489489 ACATCTGTATGTAGTCCATCTTGAAAT 58.511 33.333 0.00 0.00 44.66 2.17
2519 2772 7.851228 ACATCTGTATGTAGTCCATCTTGAAA 58.149 34.615 0.00 0.00 44.66 2.69
2520 2773 7.423844 ACATCTGTATGTAGTCCATCTTGAA 57.576 36.000 0.00 0.00 44.66 2.69
2549 2802 9.469097 AGTGAATCTACACTCTAAAGTATGTCT 57.531 33.333 0.00 0.00 46.36 3.41
2563 2816 5.412594 TGGAGCAAAATGAGTGAATCTACAC 59.587 40.000 0.00 0.00 40.60 2.90
2564 2817 5.559770 TGGAGCAAAATGAGTGAATCTACA 58.440 37.500 0.00 0.00 0.00 2.74
2565 2818 6.690194 ATGGAGCAAAATGAGTGAATCTAC 57.310 37.500 0.00 0.00 0.00 2.59
2566 2819 8.843262 CAATATGGAGCAAAATGAGTGAATCTA 58.157 33.333 0.00 0.00 0.00 1.98
2567 2820 7.201884 CCAATATGGAGCAAAATGAGTGAATCT 60.202 37.037 0.00 0.00 40.96 2.40
2568 2821 6.921857 CCAATATGGAGCAAAATGAGTGAATC 59.078 38.462 0.00 0.00 40.96 2.52
2569 2822 6.608405 TCCAATATGGAGCAAAATGAGTGAAT 59.392 34.615 0.00 0.00 42.67 2.57
2570 2823 5.951148 TCCAATATGGAGCAAAATGAGTGAA 59.049 36.000 0.00 0.00 42.67 3.18
2571 2824 5.508567 TCCAATATGGAGCAAAATGAGTGA 58.491 37.500 0.00 0.00 42.67 3.41
2572 2825 5.840243 TCCAATATGGAGCAAAATGAGTG 57.160 39.130 0.00 0.00 42.67 3.51
2602 2855 9.392259 CCCTCCGTTTCTAAATATAAGTCTTTT 57.608 33.333 0.00 0.00 0.00 2.27
2603 2856 8.765517 TCCCTCCGTTTCTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
2604 2857 8.315220 TCCCTCCGTTTCTAAATATAAGTCTT 57.685 34.615 0.00 0.00 0.00 3.01
2605 2858 7.564292 ACTCCCTCCGTTTCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
2606 2859 7.724287 ACTCCCTCCGTTTCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
2607 2860 7.672122 ACTCCCTCCGTTTCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
2608 2861 8.636213 TGTACTCCCTCCGTTTCTAAATATAAG 58.364 37.037 0.00 0.00 0.00 1.73
2609 2862 8.537728 TGTACTCCCTCCGTTTCTAAATATAA 57.462 34.615 0.00 0.00 0.00 0.98
2610 2863 8.537728 TTGTACTCCCTCCGTTTCTAAATATA 57.462 34.615 0.00 0.00 0.00 0.86
2611 2864 7.427989 TTGTACTCCCTCCGTTTCTAAATAT 57.572 36.000 0.00 0.00 0.00 1.28
2612 2865 6.855763 TTGTACTCCCTCCGTTTCTAAATA 57.144 37.500 0.00 0.00 0.00 1.40
2613 2866 5.750352 TTGTACTCCCTCCGTTTCTAAAT 57.250 39.130 0.00 0.00 0.00 1.40
2614 2867 5.070847 AGTTTGTACTCCCTCCGTTTCTAAA 59.929 40.000 0.00 0.00 0.00 1.85
2615 2868 4.590222 AGTTTGTACTCCCTCCGTTTCTAA 59.410 41.667 0.00 0.00 0.00 2.10
2616 2869 4.154942 AGTTTGTACTCCCTCCGTTTCTA 58.845 43.478 0.00 0.00 0.00 2.10
2617 2870 2.970640 AGTTTGTACTCCCTCCGTTTCT 59.029 45.455 0.00 0.00 0.00 2.52
2618 2871 3.397849 AGTTTGTACTCCCTCCGTTTC 57.602 47.619 0.00 0.00 0.00 2.78
2619 2872 4.590222 TCTTAGTTTGTACTCCCTCCGTTT 59.410 41.667 0.00 0.00 35.78 3.60
2620 2873 4.154942 TCTTAGTTTGTACTCCCTCCGTT 58.845 43.478 0.00 0.00 35.78 4.44
2621 2874 3.771216 TCTTAGTTTGTACTCCCTCCGT 58.229 45.455 0.00 0.00 35.78 4.69
2622 2875 4.401519 TGATCTTAGTTTGTACTCCCTCCG 59.598 45.833 0.00 0.00 35.78 4.63
2623 2876 5.934402 TGATCTTAGTTTGTACTCCCTCC 57.066 43.478 0.00 0.00 35.78 4.30
2624 2877 7.113658 TGATGATCTTAGTTTGTACTCCCTC 57.886 40.000 0.00 0.00 35.78 4.30
2625 2878 7.682787 ATGATGATCTTAGTTTGTACTCCCT 57.317 36.000 0.00 0.00 35.78 4.20
2626 2879 9.646427 GATATGATGATCTTAGTTTGTACTCCC 57.354 37.037 0.00 0.00 35.78 4.30
2664 2917 8.963130 CAATAAACATTAGAACGCTGAAAACAA 58.037 29.630 0.00 0.00 0.00 2.83
2688 2941 9.406828 GAATACTATGCGATGAGTGTATAACAA 57.593 33.333 0.00 0.00 0.00 2.83
2709 2962 8.600449 AAGCTTATTAGTGCTGATGAGAATAC 57.400 34.615 0.00 0.00 39.71 1.89
2763 3016 8.970859 AGTGCATAGATAAAGCAGATTTAGTT 57.029 30.769 0.00 0.00 39.21 2.24
2814 3067 0.613260 TAGTGGAAACAGAGGCGCAT 59.387 50.000 10.83 0.00 44.46 4.73
2816 3069 1.019805 GGTAGTGGAAACAGAGGCGC 61.020 60.000 0.00 0.00 44.46 6.53
2851 3105 2.031437 CGAATCCTAGCAAAGCAGCTTC 59.969 50.000 8.48 0.00 43.70 3.86
3015 3269 7.530010 CACCAGAGTTTACTTGGTAAATGATG 58.470 38.462 12.96 5.72 39.64 3.07
3093 3347 1.901833 GGTTTTGACCATTGCTCCCAT 59.098 47.619 0.00 0.00 0.00 4.00
3180 3434 1.544691 GGTCGACAGTAGACACACCAT 59.455 52.381 18.91 0.00 40.20 3.55
3318 3572 8.181573 CAGTTACAAAGAGTTTAAAGAAGCACA 58.818 33.333 0.00 0.00 0.00 4.57
3324 3578 6.826741 ACCAGCAGTTACAAAGAGTTTAAAGA 59.173 34.615 0.00 0.00 0.00 2.52
3367 3621 4.998033 TGCAATCATAACCGTACAGTTTCA 59.002 37.500 0.00 0.00 0.00 2.69
3488 3748 5.688621 CACAATACAGTATCCAAATGCATGC 59.311 40.000 11.82 11.82 0.00 4.06
3559 3819 5.295787 TGACCAAAATAAGTCATCGGTATGC 59.704 40.000 0.00 0.00 38.07 3.14
3661 3921 7.031372 TGCTAACCTTACAAACTATGTACTCG 58.969 38.462 0.00 0.00 44.11 4.18
3757 4017 5.065731 GTGAGGGCATTCTGTCTTAATCTTG 59.934 44.000 0.00 0.00 0.00 3.02
4282 4543 1.270839 GCCTACTTCAAGCTGTGTGGA 60.271 52.381 0.00 0.00 0.00 4.02
4297 4558 5.491279 GTCAATGACAGTAGCGAAGCCTAC 61.491 50.000 8.74 0.00 43.84 3.18
4308 4569 5.755409 ACAACATAGGGTCAATGACAGTA 57.245 39.130 15.86 6.09 33.68 2.74
4338 4599 6.407202 TGAGATGAACTAAGAAGGCCTTAAC 58.593 40.000 20.54 7.09 36.95 2.01
4402 4663 6.072893 GCTTACTTGGTACGAAATTGAAGGAA 60.073 38.462 0.00 0.00 0.00 3.36
4403 4664 5.410439 GCTTACTTGGTACGAAATTGAAGGA 59.590 40.000 0.00 0.00 0.00 3.36
4405 4666 6.481954 AGCTTACTTGGTACGAAATTGAAG 57.518 37.500 0.00 0.00 0.00 3.02
4448 4713 8.025445 CAGAAGTTGGAAGACATTTAAAGATGG 58.975 37.037 0.00 0.00 0.00 3.51
4496 4761 4.409901 ACCCTGTGATCATGTGATGTGATA 59.590 41.667 0.00 0.00 36.49 2.15
4523 4788 3.744940 ATCCCTGCCAAAAGAGAATGA 57.255 42.857 0.00 0.00 0.00 2.57
4551 4816 8.579682 AAAATTGCAGCACTTAGAAGTTAAAG 57.420 30.769 0.00 0.00 37.08 1.85
4750 5021 0.251297 TGAAGAACACCATGGCCCAG 60.251 55.000 13.04 1.76 0.00 4.45
4788 5059 3.236816 GACATCAAAGAAATGTGCCACG 58.763 45.455 0.00 0.00 37.47 4.94
4791 5062 4.241590 TGTGACATCAAAGAAATGTGCC 57.758 40.909 0.00 0.00 37.47 5.01
4833 5104 4.844085 TCAGTAAGATGACCCTGGAAAAGA 59.156 41.667 0.00 0.00 0.00 2.52
4910 5182 3.641436 TGAGCTGAGAACAGTAAGACCAA 59.359 43.478 0.00 0.00 45.04 3.67
4911 5183 3.230976 TGAGCTGAGAACAGTAAGACCA 58.769 45.455 0.00 0.00 45.04 4.02
4951 5223 8.186821 CAGCAAAAGGGAATGAACTCTAATAAG 58.813 37.037 0.00 0.00 0.00 1.73
4952 5224 7.122650 CCAGCAAAAGGGAATGAACTCTAATAA 59.877 37.037 0.00 0.00 0.00 1.40
4953 5225 6.603201 CCAGCAAAAGGGAATGAACTCTAATA 59.397 38.462 0.00 0.00 0.00 0.98
4954 5226 5.420104 CCAGCAAAAGGGAATGAACTCTAAT 59.580 40.000 0.00 0.00 0.00 1.73
4955 5227 4.766891 CCAGCAAAAGGGAATGAACTCTAA 59.233 41.667 0.00 0.00 0.00 2.10
4956 5228 4.042809 TCCAGCAAAAGGGAATGAACTCTA 59.957 41.667 0.00 0.00 0.00 2.43
4957 5229 3.160269 CCAGCAAAAGGGAATGAACTCT 58.840 45.455 0.00 0.00 0.00 3.24
5086 5358 3.521727 ACTCCAGCTCCCTTCTAAAAGA 58.478 45.455 0.00 0.00 34.14 2.52
5137 5409 9.598517 GAATGATAACCAATGCAAGGAATAAAA 57.401 29.630 14.81 2.62 0.00 1.52
5141 5413 5.662208 TGGAATGATAACCAATGCAAGGAAT 59.338 36.000 14.81 7.90 32.93 3.01
5167 5441 3.498397 ACCTGCAACATGTTCGTTCTAAG 59.502 43.478 8.48 0.00 0.00 2.18
5205 5479 4.749245 AACATACGCAAAAGAGGACAAG 57.251 40.909 0.00 0.00 0.00 3.16
5211 5485 5.868257 TGCTCATTAACATACGCAAAAGAG 58.132 37.500 0.00 0.00 0.00 2.85
5344 5618 5.641636 GCAACAAATAATTTCCGAAATGGGT 59.358 36.000 7.13 0.00 38.76 4.51
5350 5624 5.226396 CCACTGCAACAAATAATTTCCGAA 58.774 37.500 0.00 0.00 0.00 4.30
5435 5716 1.801242 TCACCCAGAGAGTTGACCAA 58.199 50.000 0.00 0.00 0.00 3.67
5471 5753 7.947890 TCTTTCTGAAGGGTGGTAACATTTATT 59.052 33.333 0.00 0.00 40.49 1.40
5473 5755 6.843752 TCTTTCTGAAGGGTGGTAACATTTA 58.156 36.000 0.00 0.00 40.49 1.40
5607 5890 8.424918 AGCGTTAAAGGGATATATATGATCCAG 58.575 37.037 16.35 4.33 44.17 3.86
5645 5928 6.634805 CACAAGACATGATAGAAGGTACAGT 58.365 40.000 0.00 0.00 0.00 3.55
5646 5929 5.521735 GCACAAGACATGATAGAAGGTACAG 59.478 44.000 0.00 0.00 0.00 2.74
5647 5930 5.187772 AGCACAAGACATGATAGAAGGTACA 59.812 40.000 0.00 0.00 0.00 2.90
5648 5931 5.665459 AGCACAAGACATGATAGAAGGTAC 58.335 41.667 0.00 0.00 0.00 3.34
5649 5932 5.939764 AGCACAAGACATGATAGAAGGTA 57.060 39.130 0.00 0.00 0.00 3.08
5650 5933 4.833478 AGCACAAGACATGATAGAAGGT 57.167 40.909 0.00 0.00 0.00 3.50
5655 5938 7.725818 ACATCATAAGCACAAGACATGATAG 57.274 36.000 0.00 0.00 35.20 2.08
5729 6029 3.472652 TGCGTTAAGGCAGAAGAAAAGA 58.527 40.909 18.37 0.00 38.17 2.52
5741 6041 7.381139 ACATTTTACATTTCAACTGCGTTAAGG 59.619 33.333 0.00 0.00 0.00 2.69
5790 6094 7.171508 TCACAAACTTCAGACAACATACAGATC 59.828 37.037 0.00 0.00 0.00 2.75
5827 6131 2.975489 CCTACCAGGTAAGCAGATCCAT 59.025 50.000 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.