Multiple sequence alignment - TraesCS3D01G228600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G228600 chr3D 100.000 4592 0 0 1 4592 310707064 310711655 0.000000e+00 8480.0
1 TraesCS3D01G228600 chr3D 93.642 346 21 1 124 468 310696991 310696646 2.450000e-142 516.0
2 TraesCS3D01G228600 chr3D 80.579 242 40 7 4137 4374 374968860 374968622 3.650000e-41 180.0
3 TraesCS3D01G228600 chr3B 95.263 2660 64 9 612 3230 410591389 410588751 0.000000e+00 4157.0
4 TraesCS3D01G228600 chr3B 91.452 1240 71 12 3388 4592 410588754 410587515 0.000000e+00 1670.0
5 TraesCS3D01G228600 chr3B 81.951 205 33 4 4131 4333 780305586 780305384 2.200000e-38 171.0
6 TraesCS3D01G228600 chr3B 92.857 70 0 2 525 594 410591508 410591444 3.780000e-16 97.1
7 TraesCS3D01G228600 chr3A 97.546 1141 25 3 2092 3230 421675228 421674089 0.000000e+00 1949.0
8 TraesCS3D01G228600 chr3A 90.490 1062 50 17 3388 4415 421674092 421673048 0.000000e+00 1354.0
9 TraesCS3D01G228600 chr3A 92.405 948 26 10 612 1525 421677144 421676209 0.000000e+00 1310.0
10 TraesCS3D01G228600 chr3A 96.619 562 15 2 1565 2123 421676211 421675651 0.000000e+00 929.0
11 TraesCS3D01G228600 chr3A 94.558 147 5 3 1 144 527928810 527928956 1.660000e-54 224.0
12 TraesCS3D01G228600 chr3A 94.444 126 2 2 469 594 421677316 421677196 6.060000e-44 189.0
13 TraesCS3D01G228600 chr6B 95.652 345 14 1 124 468 563806194 563806537 1.870000e-153 553.0
14 TraesCS3D01G228600 chr6B 95.376 346 15 1 124 468 563804714 563804369 2.420000e-152 549.0
15 TraesCS3D01G228600 chr6B 94.509 346 18 1 124 468 563814015 563813670 2.430000e-147 532.0
16 TraesCS3D01G228600 chr6B 93.391 348 20 1 124 468 535371863 535372210 3.170000e-141 512.0
17 TraesCS3D01G228600 chr6B 85.974 385 50 4 4209 4592 256448937 256449318 4.280000e-110 409.0
18 TraesCS3D01G228600 chr6B 87.209 86 7 3 757 841 707282738 707282656 1.360000e-15 95.3
19 TraesCS3D01G228600 chr2A 94.783 345 17 1 124 468 703560789 703561132 1.880000e-148 536.0
20 TraesCS3D01G228600 chr6A 94.269 349 19 1 124 472 108185876 108186223 2.430000e-147 532.0
21 TraesCS3D01G228600 chr7A 93.162 351 18 1 124 468 33147862 33147512 1.140000e-140 510.0
22 TraesCS3D01G228600 chr7A 96.364 165 6 0 3227 3391 469059380 469059216 5.850000e-69 272.0
23 TraesCS3D01G228600 chr7A 84.946 93 8 5 753 841 701879643 701879733 6.330000e-14 89.8
24 TraesCS3D01G228600 chr2B 87.536 345 41 2 124 468 648035022 648035364 9.260000e-107 398.0
25 TraesCS3D01G228600 chr2B 95.783 166 7 0 3228 3393 235054185 235054350 7.570000e-68 268.0
26 TraesCS3D01G228600 chr2B 80.000 245 37 12 4134 4374 2360278 2360042 2.200000e-38 171.0
27 TraesCS3D01G228600 chr7D 81.250 464 77 10 4134 4592 135940613 135940155 2.610000e-97 366.0
28 TraesCS3D01G228600 chr7D 96.364 165 6 0 3227 3391 24559182 24559346 5.850000e-69 272.0
29 TraesCS3D01G228600 chr7D 89.362 94 4 1 754 841 78265532 78265625 3.750000e-21 113.0
30 TraesCS3D01G228600 chr7D 88.298 94 5 1 754 841 78265332 78265425 1.750000e-19 108.0
31 TraesCS3D01G228600 chr5D 98.788 165 2 0 3226 3390 498721905 498722069 1.250000e-75 294.0
32 TraesCS3D01G228600 chr2D 96.364 165 6 0 3226 3390 354984471 354984635 5.850000e-69 272.0
33 TraesCS3D01G228600 chr2D 95.833 144 4 2 1 143 52113340 52113198 9.940000e-57 231.0
34 TraesCS3D01G228600 chr7B 95.783 166 7 0 3228 3393 115373865 115374030 7.570000e-68 268.0
35 TraesCS3D01G228600 chr7B 93.714 175 9 2 3216 3390 492766018 492765846 1.270000e-65 261.0
36 TraesCS3D01G228600 chr6D 95.732 164 7 0 3227 3390 90890281 90890444 9.800000e-67 265.0
37 TraesCS3D01G228600 chr6D 95.205 146 6 1 1 146 327486529 327486673 3.570000e-56 230.0
38 TraesCS3D01G228600 chr6D 86.364 88 7 4 4034 4118 163828162 163828247 1.760000e-14 91.6
39 TraesCS3D01G228600 chr4D 94.220 173 9 1 3219 3390 95137421 95137593 3.520000e-66 263.0
40 TraesCS3D01G228600 chr4D 97.080 137 4 0 1 137 168010596 168010732 9.940000e-57 231.0
41 TraesCS3D01G228600 chr4D 92.405 158 8 4 1 155 187272795 187272639 5.980000e-54 222.0
42 TraesCS3D01G228600 chr1D 96.429 140 4 1 1 140 65524058 65523920 3.570000e-56 230.0
43 TraesCS3D01G228600 chr1D 97.080 137 2 2 1 137 448067359 448067225 3.570000e-56 230.0
44 TraesCS3D01G228600 chr1D 94.521 146 7 1 1 145 206533963 206533818 1.660000e-54 224.0
45 TraesCS3D01G228600 chr1D 78.235 170 26 9 4034 4193 338540604 338540772 1.050000e-16 99.0
46 TraesCS3D01G228600 chr1D 95.652 46 2 0 4043 4088 420569298 420569343 1.770000e-09 75.0
47 TraesCS3D01G228600 chr5A 92.810 153 7 4 1 152 103580812 103580961 7.740000e-53 219.0
48 TraesCS3D01G228600 chr1A 75.904 332 46 15 4034 4333 58707746 58707417 6.200000e-29 139.0
49 TraesCS3D01G228600 chr1A 93.478 46 3 0 4043 4088 516860943 516860988 8.240000e-08 69.4
50 TraesCS3D01G228600 chr1B 87.209 86 7 3 757 841 511441417 511441335 1.360000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G228600 chr3D 310707064 310711655 4591 False 8480.0 8480 100.000000 1 4592 1 chr3D.!!$F1 4591
1 TraesCS3D01G228600 chr3B 410587515 410591508 3993 True 1974.7 4157 93.190667 525 4592 3 chr3B.!!$R2 4067
2 TraesCS3D01G228600 chr3A 421673048 421677316 4268 True 1146.2 1949 94.300800 469 4415 5 chr3A.!!$R1 3946

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
356 357 0.035630 AGCTGTGATTGGCCTGAGAC 60.036 55.000 3.32 0.0 0.00 3.36 F
1552 1630 0.176219 CCAATGATGCGCAATGGGTT 59.824 50.000 17.11 0.0 42.74 4.11 F
1553 1631 1.405797 CCAATGATGCGCAATGGGTTT 60.406 47.619 17.11 0.0 42.74 3.27 F
3242 3778 0.113776 TGTGTACTCCCTCCGTTCCT 59.886 55.000 0.00 0.0 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1993 2074 0.467290 TGCGGCCTTTTGTTCTTCCT 60.467 50.000 0.0 0.0 0.00 3.36 R
2754 3287 1.826720 TGGACGTGACATACTTACCCC 59.173 52.381 0.0 0.0 0.00 4.95 R
3330 3866 2.104967 CCACTAGGAACCACATACGGA 58.895 52.381 0.0 0.0 36.89 4.69 R
4560 5131 1.024579 CGAATAGCCCACACCACCAC 61.025 60.000 0.0 0.0 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 6.429791 TTCACACATGTATTATGTTTCCGG 57.570 37.500 0.00 0.00 0.00 5.14
31 32 5.492895 TCACACATGTATTATGTTTCCGGT 58.507 37.500 0.00 0.00 0.00 5.28
32 33 5.941058 TCACACATGTATTATGTTTCCGGTT 59.059 36.000 0.00 0.00 0.00 4.44
33 34 7.104290 TCACACATGTATTATGTTTCCGGTTA 58.896 34.615 0.00 0.00 0.00 2.85
34 35 7.606839 TCACACATGTATTATGTTTCCGGTTAA 59.393 33.333 0.00 0.00 0.00 2.01
35 36 8.402472 CACACATGTATTATGTTTCCGGTTAAT 58.598 33.333 0.00 1.95 0.00 1.40
36 37 9.616156 ACACATGTATTATGTTTCCGGTTAATA 57.384 29.630 0.00 0.00 0.00 0.98
37 38 9.872757 CACATGTATTATGTTTCCGGTTAATAC 57.127 33.333 0.00 12.47 37.73 1.89
38 39 9.616156 ACATGTATTATGTTTCCGGTTAATACA 57.384 29.630 22.83 22.83 44.85 2.29
46 47 7.311364 TGTTTCCGGTTAATACAATTCTAGC 57.689 36.000 0.00 0.00 0.00 3.42
47 48 6.879993 TGTTTCCGGTTAATACAATTCTAGCA 59.120 34.615 0.00 0.00 0.00 3.49
48 49 7.554835 TGTTTCCGGTTAATACAATTCTAGCAT 59.445 33.333 0.00 0.00 0.00 3.79
49 50 7.490962 TTCCGGTTAATACAATTCTAGCATG 57.509 36.000 0.00 0.00 0.00 4.06
50 51 6.822442 TCCGGTTAATACAATTCTAGCATGA 58.178 36.000 0.00 0.00 0.00 3.07
51 52 7.276658 TCCGGTTAATACAATTCTAGCATGAA 58.723 34.615 0.00 0.00 0.00 2.57
52 53 7.936847 TCCGGTTAATACAATTCTAGCATGAAT 59.063 33.333 0.00 0.00 38.19 2.57
53 54 9.214957 CCGGTTAATACAATTCTAGCATGAATA 57.785 33.333 0.00 0.00 35.82 1.75
110 111 9.907229 ATAATACTTTATTATTGCCTCTAGGGC 57.093 33.333 13.60 13.60 44.30 5.19
122 123 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02
123 124 4.904241 CCTCTAGGGCATATTTCCTTCAG 58.096 47.826 0.00 0.00 34.75 3.02
124 125 4.263243 CCTCTAGGGCATATTTCCTTCAGG 60.263 50.000 0.00 2.64 34.75 3.86
125 126 4.566837 TCTAGGGCATATTTCCTTCAGGA 58.433 43.478 0.00 0.00 43.73 3.86
126 127 3.584733 AGGGCATATTTCCTTCAGGAC 57.415 47.619 0.00 0.00 45.39 3.85
127 128 2.158755 AGGGCATATTTCCTTCAGGACG 60.159 50.000 0.00 0.00 45.39 4.79
128 129 2.222027 GGCATATTTCCTTCAGGACGG 58.778 52.381 0.00 0.00 45.39 4.79
129 130 1.604278 GCATATTTCCTTCAGGACGGC 59.396 52.381 0.00 0.00 45.39 5.68
130 131 1.867233 CATATTTCCTTCAGGACGGCG 59.133 52.381 4.80 4.80 45.39 6.46
131 132 0.177141 TATTTCCTTCAGGACGGCGG 59.823 55.000 13.24 0.00 45.39 6.13
132 133 3.771945 TATTTCCTTCAGGACGGCGGC 62.772 57.143 13.24 8.60 45.39 6.53
153 154 3.782244 GAGCTTGCTGTCGGCGTG 61.782 66.667 6.85 0.00 45.43 5.34
156 157 3.114616 CTTGCTGTCGGCGTGGAG 61.115 66.667 6.85 2.35 45.43 3.86
157 158 3.573772 CTTGCTGTCGGCGTGGAGA 62.574 63.158 6.85 0.00 45.43 3.71
158 159 2.842394 CTTGCTGTCGGCGTGGAGAT 62.842 60.000 6.85 0.00 45.43 2.75
159 160 2.887568 GCTGTCGGCGTGGAGATG 60.888 66.667 6.85 0.00 0.00 2.90
160 161 2.202797 CTGTCGGCGTGGAGATGG 60.203 66.667 6.85 0.00 0.00 3.51
161 162 2.678580 TGTCGGCGTGGAGATGGA 60.679 61.111 6.85 0.00 0.00 3.41
162 163 2.105128 GTCGGCGTGGAGATGGAG 59.895 66.667 6.85 0.00 0.00 3.86
163 164 3.838271 TCGGCGTGGAGATGGAGC 61.838 66.667 6.85 0.00 0.00 4.70
164 165 3.842923 CGGCGTGGAGATGGAGCT 61.843 66.667 0.00 0.00 0.00 4.09
165 166 2.202987 GGCGTGGAGATGGAGCTG 60.203 66.667 0.00 0.00 0.00 4.24
166 167 2.202987 GCGTGGAGATGGAGCTGG 60.203 66.667 0.00 0.00 0.00 4.85
167 168 2.725312 GCGTGGAGATGGAGCTGGA 61.725 63.158 0.00 0.00 0.00 3.86
168 169 1.440893 CGTGGAGATGGAGCTGGAG 59.559 63.158 0.00 0.00 0.00 3.86
169 170 1.145819 GTGGAGATGGAGCTGGAGC 59.854 63.158 0.00 0.00 42.49 4.70
192 193 4.767255 GGGGCAGGTGAGCACGAG 62.767 72.222 0.00 0.00 39.34 4.18
193 194 4.767255 GGGCAGGTGAGCACGAGG 62.767 72.222 0.00 0.00 35.83 4.63
194 195 4.767255 GGCAGGTGAGCACGAGGG 62.767 72.222 0.00 0.00 35.83 4.30
195 196 4.767255 GCAGGTGAGCACGAGGGG 62.767 72.222 0.00 0.00 0.00 4.79
196 197 2.997315 CAGGTGAGCACGAGGGGA 60.997 66.667 0.00 0.00 0.00 4.81
197 198 2.203788 AGGTGAGCACGAGGGGAA 60.204 61.111 0.00 0.00 0.00 3.97
198 199 2.047179 GGTGAGCACGAGGGGAAC 60.047 66.667 0.00 0.00 0.00 3.62
199 200 2.741092 GTGAGCACGAGGGGAACA 59.259 61.111 0.00 0.00 0.00 3.18
200 201 1.374758 GTGAGCACGAGGGGAACAG 60.375 63.158 0.00 0.00 0.00 3.16
201 202 1.533033 TGAGCACGAGGGGAACAGA 60.533 57.895 0.00 0.00 0.00 3.41
202 203 1.216710 GAGCACGAGGGGAACAGAG 59.783 63.158 0.00 0.00 0.00 3.35
203 204 2.232298 GAGCACGAGGGGAACAGAGG 62.232 65.000 0.00 0.00 0.00 3.69
204 205 2.266055 CACGAGGGGAACAGAGGC 59.734 66.667 0.00 0.00 0.00 4.70
205 206 3.382832 ACGAGGGGAACAGAGGCG 61.383 66.667 0.00 0.00 0.00 5.52
206 207 4.148825 CGAGGGGAACAGAGGCGG 62.149 72.222 0.00 0.00 0.00 6.13
207 208 2.683933 GAGGGGAACAGAGGCGGA 60.684 66.667 0.00 0.00 0.00 5.54
208 209 3.003763 AGGGGAACAGAGGCGGAC 61.004 66.667 0.00 0.00 0.00 4.79
209 210 4.452733 GGGGAACAGAGGCGGACG 62.453 72.222 0.00 0.00 0.00 4.79
212 213 4.415332 GAACAGAGGCGGACGCGA 62.415 66.667 15.93 0.00 43.06 5.87
213 214 4.421479 AACAGAGGCGGACGCGAG 62.421 66.667 15.93 4.66 43.06 5.03
220 221 4.814294 GCGGACGCGAGGTGGATT 62.814 66.667 15.93 0.00 0.00 3.01
221 222 2.582498 CGGACGCGAGGTGGATTC 60.582 66.667 15.93 0.00 0.00 2.52
222 223 2.582498 GGACGCGAGGTGGATTCG 60.582 66.667 15.93 0.00 40.85 3.34
223 224 2.181021 GACGCGAGGTGGATTCGT 59.819 61.111 15.93 0.00 40.08 3.85
224 225 1.445582 GACGCGAGGTGGATTCGTT 60.446 57.895 15.93 0.00 40.08 3.85
225 226 1.411493 GACGCGAGGTGGATTCGTTC 61.411 60.000 15.93 0.00 40.08 3.95
226 227 2.165301 CGCGAGGTGGATTCGTTCC 61.165 63.158 0.00 0.88 45.69 3.62
238 239 5.986004 GGATTCGTTCCGACAGAATTAAT 57.014 39.130 0.00 0.00 36.69 1.40
239 240 6.359480 GGATTCGTTCCGACAGAATTAATT 57.641 37.500 0.00 0.00 36.69 1.40
240 241 6.419771 GGATTCGTTCCGACAGAATTAATTC 58.580 40.000 18.70 18.70 36.69 2.17
241 242 6.036735 GGATTCGTTCCGACAGAATTAATTCA 59.963 38.462 26.02 5.42 35.95 2.57
242 243 6.403333 TTCGTTCCGACAGAATTAATTCAG 57.597 37.500 26.02 21.29 35.95 3.02
243 244 4.868171 TCGTTCCGACAGAATTAATTCAGG 59.132 41.667 26.02 21.52 39.23 3.86
244 245 4.630069 CGTTCCGACAGAATTAATTCAGGT 59.370 41.667 26.02 22.48 39.23 4.00
245 246 5.445939 CGTTCCGACAGAATTAATTCAGGTG 60.446 44.000 26.02 18.69 39.23 4.00
246 247 4.513442 TCCGACAGAATTAATTCAGGTGG 58.487 43.478 26.02 22.02 39.23 4.61
247 248 4.224147 TCCGACAGAATTAATTCAGGTGGA 59.776 41.667 26.02 23.47 39.23 4.02
248 249 4.572389 CCGACAGAATTAATTCAGGTGGAG 59.428 45.833 26.02 16.34 39.23 3.86
249 250 5.419542 CGACAGAATTAATTCAGGTGGAGA 58.580 41.667 26.02 0.00 39.23 3.71
250 251 5.521735 CGACAGAATTAATTCAGGTGGAGAG 59.478 44.000 26.02 10.65 39.23 3.20
251 252 6.627087 ACAGAATTAATTCAGGTGGAGAGA 57.373 37.500 26.02 0.00 39.23 3.10
252 253 6.648192 ACAGAATTAATTCAGGTGGAGAGAG 58.352 40.000 26.02 6.94 39.23 3.20
253 254 6.214412 ACAGAATTAATTCAGGTGGAGAGAGT 59.786 38.462 26.02 2.11 39.23 3.24
254 255 6.538021 CAGAATTAATTCAGGTGGAGAGAGTG 59.462 42.308 26.02 9.97 39.23 3.51
255 256 2.777832 AATTCAGGTGGAGAGAGTGC 57.222 50.000 0.00 0.00 0.00 4.40
256 257 0.534412 ATTCAGGTGGAGAGAGTGCG 59.466 55.000 0.00 0.00 0.00 5.34
257 258 1.536073 TTCAGGTGGAGAGAGTGCGG 61.536 60.000 0.00 0.00 0.00 5.69
258 259 2.681778 AGGTGGAGAGAGTGCGGG 60.682 66.667 0.00 0.00 0.00 6.13
259 260 2.997897 GGTGGAGAGAGTGCGGGT 60.998 66.667 0.00 0.00 0.00 5.28
260 261 2.584391 GGTGGAGAGAGTGCGGGTT 61.584 63.158 0.00 0.00 0.00 4.11
261 262 1.374758 GTGGAGAGAGTGCGGGTTG 60.375 63.158 0.00 0.00 0.00 3.77
262 263 1.533033 TGGAGAGAGTGCGGGTTGA 60.533 57.895 0.00 0.00 0.00 3.18
263 264 1.118965 TGGAGAGAGTGCGGGTTGAA 61.119 55.000 0.00 0.00 0.00 2.69
264 265 0.250513 GGAGAGAGTGCGGGTTGAAT 59.749 55.000 0.00 0.00 0.00 2.57
265 266 1.480954 GGAGAGAGTGCGGGTTGAATA 59.519 52.381 0.00 0.00 0.00 1.75
266 267 2.482142 GGAGAGAGTGCGGGTTGAATAG 60.482 54.545 0.00 0.00 0.00 1.73
267 268 1.482593 AGAGAGTGCGGGTTGAATAGG 59.517 52.381 0.00 0.00 0.00 2.57
268 269 0.541863 AGAGTGCGGGTTGAATAGGG 59.458 55.000 0.00 0.00 0.00 3.53
269 270 0.539986 GAGTGCGGGTTGAATAGGGA 59.460 55.000 0.00 0.00 0.00 4.20
270 271 0.988832 AGTGCGGGTTGAATAGGGAA 59.011 50.000 0.00 0.00 0.00 3.97
271 272 1.353022 AGTGCGGGTTGAATAGGGAAA 59.647 47.619 0.00 0.00 0.00 3.13
272 273 2.164338 GTGCGGGTTGAATAGGGAAAA 58.836 47.619 0.00 0.00 0.00 2.29
273 274 2.559231 GTGCGGGTTGAATAGGGAAAAA 59.441 45.455 0.00 0.00 0.00 1.94
274 275 2.823154 TGCGGGTTGAATAGGGAAAAAG 59.177 45.455 0.00 0.00 0.00 2.27
275 276 2.165641 GCGGGTTGAATAGGGAAAAAGG 59.834 50.000 0.00 0.00 0.00 3.11
276 277 2.165641 CGGGTTGAATAGGGAAAAAGGC 59.834 50.000 0.00 0.00 0.00 4.35
277 278 3.169908 GGGTTGAATAGGGAAAAAGGCA 58.830 45.455 0.00 0.00 0.00 4.75
278 279 3.195610 GGGTTGAATAGGGAAAAAGGCAG 59.804 47.826 0.00 0.00 0.00 4.85
279 280 3.195610 GGTTGAATAGGGAAAAAGGCAGG 59.804 47.826 0.00 0.00 0.00 4.85
280 281 3.100207 TGAATAGGGAAAAAGGCAGGG 57.900 47.619 0.00 0.00 0.00 4.45
281 282 2.292192 TGAATAGGGAAAAAGGCAGGGG 60.292 50.000 0.00 0.00 0.00 4.79
282 283 0.636647 ATAGGGAAAAAGGCAGGGGG 59.363 55.000 0.00 0.00 0.00 5.40
283 284 0.778479 TAGGGAAAAAGGCAGGGGGT 60.778 55.000 0.00 0.00 0.00 4.95
284 285 1.152118 GGGAAAAAGGCAGGGGGTT 60.152 57.895 0.00 0.00 0.00 4.11
285 286 0.766674 GGGAAAAAGGCAGGGGGTTT 60.767 55.000 0.00 0.00 0.00 3.27
286 287 0.685097 GGAAAAAGGCAGGGGGTTTC 59.315 55.000 0.00 0.00 0.00 2.78
287 288 1.717032 GAAAAAGGCAGGGGGTTTCT 58.283 50.000 0.00 0.00 0.00 2.52
288 289 1.344438 GAAAAAGGCAGGGGGTTTCTG 59.656 52.381 0.00 0.00 35.49 3.02
295 296 1.413118 CAGGGGGTTTCTGCAAAAGT 58.587 50.000 0.00 0.00 0.00 2.66
296 297 1.069049 CAGGGGGTTTCTGCAAAAGTG 59.931 52.381 0.00 0.00 0.00 3.16
306 307 4.948576 CAAAAGTGCATGCGCTGA 57.051 50.000 32.94 2.32 39.64 4.26
307 308 2.427360 CAAAAGTGCATGCGCTGAC 58.573 52.632 32.94 15.91 39.64 3.51
308 309 1.005294 CAAAAGTGCATGCGCTGACC 61.005 55.000 32.94 6.84 39.64 4.02
309 310 2.462255 AAAAGTGCATGCGCTGACCG 62.462 55.000 32.94 0.00 39.64 4.79
310 311 3.881952 AAGTGCATGCGCTGACCGA 62.882 57.895 32.94 0.00 40.02 4.69
311 312 3.197790 GTGCATGCGCTGACCGAT 61.198 61.111 23.77 0.00 40.02 4.18
312 313 2.891936 TGCATGCGCTGACCGATC 60.892 61.111 14.09 0.00 40.02 3.69
313 314 3.643978 GCATGCGCTGACCGATCC 61.644 66.667 9.73 0.00 40.02 3.36
314 315 2.202919 CATGCGCTGACCGATCCA 60.203 61.111 9.73 0.00 40.02 3.41
315 316 2.107750 ATGCGCTGACCGATCCAG 59.892 61.111 9.73 0.00 40.02 3.86
320 321 2.187946 CTGACCGATCCAGCCACC 59.812 66.667 0.00 0.00 0.00 4.61
321 322 2.284625 TGACCGATCCAGCCACCT 60.285 61.111 0.00 0.00 0.00 4.00
322 323 2.187946 GACCGATCCAGCCACCTG 59.812 66.667 0.00 0.00 38.85 4.00
333 334 2.975536 CCACCTGGCTGCCAATTG 59.024 61.111 23.51 20.35 30.80 2.32
334 335 1.909781 CCACCTGGCTGCCAATTGT 60.910 57.895 23.51 16.51 30.80 2.71
335 336 1.588082 CACCTGGCTGCCAATTGTC 59.412 57.895 23.51 0.00 30.80 3.18
336 337 1.973281 ACCTGGCTGCCAATTGTCG 60.973 57.895 23.51 9.59 30.80 4.35
337 338 1.675310 CCTGGCTGCCAATTGTCGA 60.675 57.895 23.51 0.00 30.80 4.20
338 339 1.651240 CCTGGCTGCCAATTGTCGAG 61.651 60.000 23.51 8.06 30.80 4.04
339 340 2.262471 CTGGCTGCCAATTGTCGAGC 62.262 60.000 23.51 8.18 30.80 5.03
340 341 2.042831 GGCTGCCAATTGTCGAGCT 61.043 57.895 15.17 0.00 0.00 4.09
341 342 1.136147 GCTGCCAATTGTCGAGCTG 59.864 57.895 4.43 5.90 0.00 4.24
342 343 1.580845 GCTGCCAATTGTCGAGCTGT 61.581 55.000 4.43 0.00 0.00 4.40
343 344 0.167470 CTGCCAATTGTCGAGCTGTG 59.833 55.000 4.43 0.00 0.00 3.66
344 345 0.250252 TGCCAATTGTCGAGCTGTGA 60.250 50.000 4.43 0.00 0.00 3.58
345 346 1.089920 GCCAATTGTCGAGCTGTGAT 58.910 50.000 4.43 0.00 0.00 3.06
346 347 1.470098 GCCAATTGTCGAGCTGTGATT 59.530 47.619 4.43 0.00 0.00 2.57
347 348 2.730090 GCCAATTGTCGAGCTGTGATTG 60.730 50.000 4.43 0.00 0.00 2.67
348 349 2.159476 CCAATTGTCGAGCTGTGATTGG 60.159 50.000 4.43 0.00 38.03 3.16
349 350 1.089920 ATTGTCGAGCTGTGATTGGC 58.910 50.000 0.00 0.00 0.00 4.52
350 351 0.955428 TTGTCGAGCTGTGATTGGCC 60.955 55.000 0.00 0.00 0.00 5.36
351 352 1.078848 GTCGAGCTGTGATTGGCCT 60.079 57.895 3.32 0.00 0.00 5.19
352 353 1.078918 TCGAGCTGTGATTGGCCTG 60.079 57.895 3.32 0.00 0.00 4.85
353 354 1.078918 CGAGCTGTGATTGGCCTGA 60.079 57.895 3.32 0.00 0.00 3.86
354 355 1.088340 CGAGCTGTGATTGGCCTGAG 61.088 60.000 3.32 0.00 0.00 3.35
355 356 0.251354 GAGCTGTGATTGGCCTGAGA 59.749 55.000 3.32 0.00 0.00 3.27
356 357 0.035630 AGCTGTGATTGGCCTGAGAC 60.036 55.000 3.32 0.00 0.00 3.36
357 358 0.035630 GCTGTGATTGGCCTGAGACT 60.036 55.000 3.32 0.00 0.00 3.24
358 359 1.208052 GCTGTGATTGGCCTGAGACTA 59.792 52.381 3.32 0.00 0.00 2.59
359 360 2.355108 GCTGTGATTGGCCTGAGACTAA 60.355 50.000 3.32 0.00 0.00 2.24
360 361 3.869912 GCTGTGATTGGCCTGAGACTAAA 60.870 47.826 3.32 0.00 0.00 1.85
361 362 4.521146 CTGTGATTGGCCTGAGACTAAAT 58.479 43.478 3.32 0.00 0.00 1.40
362 363 4.517285 TGTGATTGGCCTGAGACTAAATC 58.483 43.478 3.32 2.55 0.00 2.17
363 364 4.019411 TGTGATTGGCCTGAGACTAAATCA 60.019 41.667 3.32 5.49 33.02 2.57
364 365 5.128919 GTGATTGGCCTGAGACTAAATCAT 58.871 41.667 12.42 0.00 36.67 2.45
365 366 5.238214 GTGATTGGCCTGAGACTAAATCATC 59.762 44.000 12.42 5.19 36.67 2.92
366 367 4.842531 TTGGCCTGAGACTAAATCATCA 57.157 40.909 3.32 0.00 0.00 3.07
367 368 4.142609 TGGCCTGAGACTAAATCATCAC 57.857 45.455 3.32 0.00 0.00 3.06
368 369 3.519107 TGGCCTGAGACTAAATCATCACA 59.481 43.478 3.32 0.00 0.00 3.58
369 370 4.164796 TGGCCTGAGACTAAATCATCACAT 59.835 41.667 3.32 0.00 0.00 3.21
370 371 4.514441 GGCCTGAGACTAAATCATCACATG 59.486 45.833 0.00 0.00 0.00 3.21
371 372 5.363101 GCCTGAGACTAAATCATCACATGA 58.637 41.667 0.00 0.00 44.55 3.07
372 373 5.466058 GCCTGAGACTAAATCATCACATGAG 59.534 44.000 0.00 0.00 43.53 2.90
373 374 5.990386 CCTGAGACTAAATCATCACATGAGG 59.010 44.000 0.00 0.00 43.53 3.86
374 375 6.407865 CCTGAGACTAAATCATCACATGAGGT 60.408 42.308 0.00 0.00 43.53 3.85
384 385 0.599558 CACATGAGGTGCAAGTTGGG 59.400 55.000 4.75 0.00 41.36 4.12
385 386 0.540365 ACATGAGGTGCAAGTTGGGG 60.540 55.000 4.75 0.00 0.00 4.96
386 387 0.540365 CATGAGGTGCAAGTTGGGGT 60.540 55.000 4.75 0.00 0.00 4.95
387 388 1.072266 ATGAGGTGCAAGTTGGGGTA 58.928 50.000 4.75 0.00 0.00 3.69
388 389 1.072266 TGAGGTGCAAGTTGGGGTAT 58.928 50.000 4.75 0.00 0.00 2.73
389 390 1.271871 TGAGGTGCAAGTTGGGGTATG 60.272 52.381 4.75 0.00 0.00 2.39
390 391 1.004277 GAGGTGCAAGTTGGGGTATGA 59.996 52.381 4.75 0.00 0.00 2.15
391 392 1.640670 AGGTGCAAGTTGGGGTATGAT 59.359 47.619 4.75 0.00 0.00 2.45
392 393 1.750778 GGTGCAAGTTGGGGTATGATG 59.249 52.381 4.75 0.00 0.00 3.07
393 394 1.750778 GTGCAAGTTGGGGTATGATGG 59.249 52.381 4.75 0.00 0.00 3.51
394 395 1.638070 TGCAAGTTGGGGTATGATGGA 59.362 47.619 4.75 0.00 0.00 3.41
395 396 2.301346 GCAAGTTGGGGTATGATGGAG 58.699 52.381 4.75 0.00 0.00 3.86
396 397 2.357154 GCAAGTTGGGGTATGATGGAGT 60.357 50.000 4.75 0.00 0.00 3.85
397 398 3.545703 CAAGTTGGGGTATGATGGAGTC 58.454 50.000 0.00 0.00 0.00 3.36
398 399 2.845659 AGTTGGGGTATGATGGAGTCA 58.154 47.619 0.00 0.00 42.06 3.41
399 400 3.189606 AGTTGGGGTATGATGGAGTCAA 58.810 45.455 0.00 0.00 40.97 3.18
400 401 3.200825 AGTTGGGGTATGATGGAGTCAAG 59.799 47.826 0.00 0.00 40.97 3.02
401 402 2.845659 TGGGGTATGATGGAGTCAAGT 58.154 47.619 0.00 0.00 40.97 3.16
402 403 3.189606 TGGGGTATGATGGAGTCAAGTT 58.810 45.455 0.00 0.00 40.97 2.66
403 404 3.591527 TGGGGTATGATGGAGTCAAGTTT 59.408 43.478 0.00 0.00 40.97 2.66
404 405 4.044065 TGGGGTATGATGGAGTCAAGTTTT 59.956 41.667 0.00 0.00 40.97 2.43
405 406 4.399303 GGGGTATGATGGAGTCAAGTTTTG 59.601 45.833 0.00 0.00 40.97 2.44
406 407 4.142381 GGGTATGATGGAGTCAAGTTTTGC 60.142 45.833 0.00 0.00 40.97 3.68
407 408 4.458989 GGTATGATGGAGTCAAGTTTTGCA 59.541 41.667 0.00 0.00 40.97 4.08
408 409 5.048083 GGTATGATGGAGTCAAGTTTTGCAA 60.048 40.000 0.00 0.00 40.97 4.08
409 410 4.572985 TGATGGAGTCAAGTTTTGCAAG 57.427 40.909 0.00 0.00 32.78 4.01
410 411 4.206375 TGATGGAGTCAAGTTTTGCAAGA 58.794 39.130 0.00 0.00 32.78 3.02
411 412 4.828939 TGATGGAGTCAAGTTTTGCAAGAT 59.171 37.500 0.00 0.00 32.78 2.40
412 413 5.302568 TGATGGAGTCAAGTTTTGCAAGATT 59.697 36.000 0.00 0.00 32.78 2.40
413 414 4.935702 TGGAGTCAAGTTTTGCAAGATTG 58.064 39.130 0.00 6.63 0.00 2.67
414 415 4.202141 TGGAGTCAAGTTTTGCAAGATTGG 60.202 41.667 15.87 1.41 0.00 3.16
415 416 4.301628 GAGTCAAGTTTTGCAAGATTGGG 58.698 43.478 15.87 1.01 0.00 4.12
416 417 3.960102 AGTCAAGTTTTGCAAGATTGGGA 59.040 39.130 15.87 2.96 0.00 4.37
417 418 4.051237 GTCAAGTTTTGCAAGATTGGGAC 58.949 43.478 15.87 9.73 0.00 4.46
418 419 3.960102 TCAAGTTTTGCAAGATTGGGACT 59.040 39.130 15.87 4.96 0.00 3.85
419 420 4.053295 CAAGTTTTGCAAGATTGGGACTG 58.947 43.478 0.00 0.00 0.00 3.51
420 421 3.565307 AGTTTTGCAAGATTGGGACTGA 58.435 40.909 0.00 0.00 0.00 3.41
421 422 3.960102 AGTTTTGCAAGATTGGGACTGAA 59.040 39.130 0.00 0.00 0.00 3.02
422 423 4.590222 AGTTTTGCAAGATTGGGACTGAAT 59.410 37.500 0.00 0.00 0.00 2.57
423 424 4.789012 TTTGCAAGATTGGGACTGAATC 57.211 40.909 0.00 0.00 0.00 2.52
424 425 3.438216 TGCAAGATTGGGACTGAATCA 57.562 42.857 0.00 0.00 33.03 2.57
425 426 3.972133 TGCAAGATTGGGACTGAATCAT 58.028 40.909 0.00 0.00 33.03 2.45
426 427 3.949754 TGCAAGATTGGGACTGAATCATC 59.050 43.478 0.00 0.00 33.03 2.92
427 428 3.949754 GCAAGATTGGGACTGAATCATCA 59.050 43.478 0.00 0.00 33.03 3.07
428 429 4.201990 GCAAGATTGGGACTGAATCATCAC 60.202 45.833 0.00 0.00 33.03 3.06
429 430 4.849813 AGATTGGGACTGAATCATCACA 57.150 40.909 0.00 0.00 33.03 3.58
430 431 5.384145 AGATTGGGACTGAATCATCACAT 57.616 39.130 0.00 0.00 33.03 3.21
431 432 5.763355 AGATTGGGACTGAATCATCACATT 58.237 37.500 0.00 0.00 33.03 2.71
432 433 5.826737 AGATTGGGACTGAATCATCACATTC 59.173 40.000 9.61 9.61 33.03 2.67
433 434 4.849813 TGGGACTGAATCATCACATTCT 57.150 40.909 0.00 0.00 34.35 2.40
434 435 4.520179 TGGGACTGAATCATCACATTCTG 58.480 43.478 0.00 0.00 37.60 3.02
435 436 4.019051 TGGGACTGAATCATCACATTCTGT 60.019 41.667 5.66 5.66 43.68 3.41
446 447 3.837213 CACATTCTGTGCAAGTTAGGG 57.163 47.619 0.00 0.00 41.89 3.53
447 448 3.149196 CACATTCTGTGCAAGTTAGGGT 58.851 45.455 0.00 0.00 41.89 4.34
448 449 4.323417 CACATTCTGTGCAAGTTAGGGTA 58.677 43.478 0.00 0.00 41.89 3.69
449 450 4.154195 CACATTCTGTGCAAGTTAGGGTAC 59.846 45.833 0.00 0.00 41.89 3.34
450 451 6.824253 CACATTCTGTGCAAGTTAGGGTACC 61.824 48.000 2.17 2.17 46.34 3.34
464 465 2.924757 GGTACCTGGGGTGCTATTAC 57.075 55.000 4.06 0.00 38.37 1.89
465 466 1.419012 GGTACCTGGGGTGCTATTACC 59.581 57.143 4.06 0.00 38.37 2.85
466 467 2.405559 GTACCTGGGGTGCTATTACCT 58.594 52.381 0.00 0.00 40.66 3.08
467 468 1.508256 ACCTGGGGTGCTATTACCTC 58.492 55.000 0.00 0.00 41.82 3.85
503 504 3.219281 AGGTACCAACACACCAAACATC 58.781 45.455 15.94 0.00 37.28 3.06
554 555 3.628280 GACGAGCCACAGGACGGAC 62.628 68.421 0.00 0.00 0.00 4.79
555 556 4.778415 CGAGCCACAGGACGGACG 62.778 72.222 0.00 0.00 0.00 4.79
556 557 4.436998 GAGCCACAGGACGGACGG 62.437 72.222 0.00 0.00 0.00 4.79
572 573 1.006102 CGGCGGAGACAAACTCACT 60.006 57.895 0.00 0.00 46.54 3.41
599 600 9.610705 TTTTTCATCAAATCATCAGTGGAAAAA 57.389 25.926 0.00 0.00 38.57 1.94
650 688 1.532437 TGACAAAGCTTGCACTCGATG 59.468 47.619 0.00 0.00 0.00 3.84
682 720 1.106351 TGCCGTCATTTGCCAAGTGT 61.106 50.000 0.00 0.00 0.00 3.55
1167 1245 2.264794 CGCTACCCGACTTGGCTT 59.735 61.111 0.00 0.00 40.02 4.35
1214 1292 4.226803 CGTTTTGCGCTCCCTTTG 57.773 55.556 9.73 0.00 0.00 2.77
1215 1293 1.358759 CGTTTTGCGCTCCCTTTGT 59.641 52.632 9.73 0.00 0.00 2.83
1236 1314 1.636148 TAGGTTGGCGGTAAGTGACT 58.364 50.000 0.00 0.00 0.00 3.41
1366 1444 2.376808 ATTCTTGTCTCCACTGCGAG 57.623 50.000 0.00 0.00 0.00 5.03
1390 1468 4.020218 TCCCAGTTCTACCACTCAATTCTG 60.020 45.833 0.00 0.00 0.00 3.02
1520 1598 1.185315 TGCCCAGCTTCTATTTTGGC 58.815 50.000 0.00 0.00 37.90 4.52
1543 1621 2.892374 TGTGAGTCTACCAATGATGCG 58.108 47.619 0.00 0.00 0.00 4.73
1544 1622 1.594862 GTGAGTCTACCAATGATGCGC 59.405 52.381 0.00 0.00 0.00 6.09
1545 1623 1.206849 TGAGTCTACCAATGATGCGCA 59.793 47.619 14.96 14.96 0.00 6.09
1546 1624 2.279741 GAGTCTACCAATGATGCGCAA 58.720 47.619 17.11 0.00 0.00 4.85
1547 1625 2.874701 GAGTCTACCAATGATGCGCAAT 59.125 45.455 17.11 0.00 0.00 3.56
1548 1626 2.615447 AGTCTACCAATGATGCGCAATG 59.385 45.455 17.11 11.52 0.00 2.82
1550 1628 4.742274 CCAATGATGCGCAATGGG 57.258 55.556 17.11 7.82 42.74 4.00
1551 1629 1.817881 CCAATGATGCGCAATGGGT 59.182 52.632 17.11 0.00 42.74 4.51
1552 1630 0.176219 CCAATGATGCGCAATGGGTT 59.824 50.000 17.11 0.00 42.74 4.11
1553 1631 1.405797 CCAATGATGCGCAATGGGTTT 60.406 47.619 17.11 0.00 42.74 3.27
1554 1632 1.928503 CAATGATGCGCAATGGGTTTC 59.071 47.619 17.11 5.99 0.00 2.78
1555 1633 1.477553 ATGATGCGCAATGGGTTTCT 58.522 45.000 17.11 0.00 0.00 2.52
1556 1634 2.121291 TGATGCGCAATGGGTTTCTA 57.879 45.000 17.11 0.00 0.00 2.10
1557 1635 2.653726 TGATGCGCAATGGGTTTCTAT 58.346 42.857 17.11 0.00 0.00 1.98
1558 1636 2.358582 TGATGCGCAATGGGTTTCTATG 59.641 45.455 17.11 0.00 0.00 2.23
1559 1637 2.121291 TGCGCAATGGGTTTCTATGA 57.879 45.000 8.16 0.00 0.00 2.15
1560 1638 2.441410 TGCGCAATGGGTTTCTATGAA 58.559 42.857 8.16 0.00 0.00 2.57
1561 1639 2.423185 TGCGCAATGGGTTTCTATGAAG 59.577 45.455 8.16 0.00 0.00 3.02
1562 1640 2.796032 GCGCAATGGGTTTCTATGAAGC 60.796 50.000 0.30 0.00 0.00 3.86
1623 1701 2.947652 CCATCTACCGACGAACTAGGAA 59.052 50.000 0.00 0.00 0.00 3.36
1828 1906 6.546034 AGTTACTCCAAATTGTGCAACTACTT 59.454 34.615 0.00 0.00 38.04 2.24
1993 2074 8.950007 AAAGGAACCAAGGATTCTGTAAATAA 57.050 30.769 0.00 0.00 0.00 1.40
2009 2090 6.988522 TGTAAATAAGGAAGAACAAAAGGCC 58.011 36.000 0.00 0.00 0.00 5.19
2754 3287 5.909621 ATGGAGAACACCAATCTGAATTG 57.090 39.130 0.00 0.00 43.47 2.32
2927 3460 2.643551 CTTATAGCCCCAGTTGTGTGG 58.356 52.381 0.00 0.00 37.34 4.17
3169 3705 3.541632 TGTGCTTAGTATTAAGGCCTGC 58.458 45.455 5.69 1.67 37.37 4.85
3230 3766 5.279506 CCACAGACAACCTATCTTGTGTACT 60.280 44.000 0.00 0.00 34.40 2.73
3231 3767 5.864474 CACAGACAACCTATCTTGTGTACTC 59.136 44.000 0.00 0.00 34.40 2.59
3232 3768 5.047235 ACAGACAACCTATCTTGTGTACTCC 60.047 44.000 0.00 0.00 34.40 3.85
3233 3769 4.466726 AGACAACCTATCTTGTGTACTCCC 59.533 45.833 0.00 0.00 34.40 4.30
3234 3770 4.426704 ACAACCTATCTTGTGTACTCCCT 58.573 43.478 0.00 0.00 32.95 4.20
3235 3771 4.466726 ACAACCTATCTTGTGTACTCCCTC 59.533 45.833 0.00 0.00 32.95 4.30
3236 3772 3.644335 ACCTATCTTGTGTACTCCCTCC 58.356 50.000 0.00 0.00 0.00 4.30
3237 3773 2.623889 CCTATCTTGTGTACTCCCTCCG 59.376 54.545 0.00 0.00 0.00 4.63
3238 3774 2.233305 ATCTTGTGTACTCCCTCCGT 57.767 50.000 0.00 0.00 0.00 4.69
3239 3775 2.005370 TCTTGTGTACTCCCTCCGTT 57.995 50.000 0.00 0.00 0.00 4.44
3240 3776 1.891150 TCTTGTGTACTCCCTCCGTTC 59.109 52.381 0.00 0.00 0.00 3.95
3241 3777 0.971386 TTGTGTACTCCCTCCGTTCC 59.029 55.000 0.00 0.00 0.00 3.62
3242 3778 0.113776 TGTGTACTCCCTCCGTTCCT 59.886 55.000 0.00 0.00 0.00 3.36
3243 3779 1.355381 TGTGTACTCCCTCCGTTCCTA 59.645 52.381 0.00 0.00 0.00 2.94
3244 3780 2.225091 TGTGTACTCCCTCCGTTCCTAA 60.225 50.000 0.00 0.00 0.00 2.69
3245 3781 2.827921 GTGTACTCCCTCCGTTCCTAAA 59.172 50.000 0.00 0.00 0.00 1.85
3246 3782 3.450096 GTGTACTCCCTCCGTTCCTAAAT 59.550 47.826 0.00 0.00 0.00 1.40
3247 3783 4.646492 GTGTACTCCCTCCGTTCCTAAATA 59.354 45.833 0.00 0.00 0.00 1.40
3248 3784 4.646492 TGTACTCCCTCCGTTCCTAAATAC 59.354 45.833 0.00 0.00 0.00 1.89
3249 3785 3.716431 ACTCCCTCCGTTCCTAAATACA 58.284 45.455 0.00 0.00 0.00 2.29
3250 3786 4.098894 ACTCCCTCCGTTCCTAAATACAA 58.901 43.478 0.00 0.00 0.00 2.41
3251 3787 4.161754 ACTCCCTCCGTTCCTAAATACAAG 59.838 45.833 0.00 0.00 0.00 3.16
3252 3788 4.098894 TCCCTCCGTTCCTAAATACAAGT 58.901 43.478 0.00 0.00 0.00 3.16
3253 3789 4.161001 TCCCTCCGTTCCTAAATACAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
3254 3790 4.161754 CCCTCCGTTCCTAAATACAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
3255 3791 5.338137 CCCTCCGTTCCTAAATACAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
3256 3792 6.171213 CCTCCGTTCCTAAATACAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
3257 3793 6.092259 CCTCCGTTCCTAAATACAAGTCTTTG 59.908 42.308 0.00 0.00 40.24 2.77
3270 3806 6.426646 ACAAGTCTTTGTAGAGATTCCACT 57.573 37.500 0.00 0.00 45.45 4.00
3271 3807 7.540474 ACAAGTCTTTGTAGAGATTCCACTA 57.460 36.000 0.00 0.00 45.45 2.74
3272 3808 7.607250 ACAAGTCTTTGTAGAGATTCCACTAG 58.393 38.462 0.00 0.00 45.45 2.57
3273 3809 7.451877 ACAAGTCTTTGTAGAGATTCCACTAGA 59.548 37.037 0.00 0.00 45.45 2.43
3274 3810 8.474025 CAAGTCTTTGTAGAGATTCCACTAGAT 58.526 37.037 0.00 0.00 0.00 1.98
3275 3811 8.006298 AGTCTTTGTAGAGATTCCACTAGATG 57.994 38.462 0.00 0.00 0.00 2.90
3289 3825 5.614923 CACTAGATGGACTACATACGGAG 57.385 47.826 0.00 0.00 40.72 4.63
3290 3826 4.073549 ACTAGATGGACTACATACGGAGC 58.926 47.826 0.00 0.00 40.72 4.70
3291 3827 2.945456 AGATGGACTACATACGGAGCA 58.055 47.619 0.00 0.00 40.72 4.26
3292 3828 3.296854 AGATGGACTACATACGGAGCAA 58.703 45.455 0.00 0.00 40.72 3.91
3293 3829 3.704566 AGATGGACTACATACGGAGCAAA 59.295 43.478 0.00 0.00 40.72 3.68
3294 3830 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
3295 3831 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
3296 3832 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
3297 3833 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
3298 3834 4.873827 GGACTACATACGGAGCAAAATGAA 59.126 41.667 0.00 0.00 0.00 2.57
3299 3835 5.527582 GGACTACATACGGAGCAAAATGAAT 59.472 40.000 0.00 0.00 0.00 2.57
3300 3836 6.363577 ACTACATACGGAGCAAAATGAATG 57.636 37.500 0.00 0.00 0.00 2.67
3301 3837 6.112734 ACTACATACGGAGCAAAATGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
3302 3838 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
3303 3839 6.455360 ACATACGGAGCAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
3304 3840 6.498304 ACATACGGAGCAAAATGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
3305 3841 6.319658 ACATACGGAGCAAAATGAATGAATCT 59.680 34.615 0.00 0.00 0.00 2.40
3306 3842 7.498900 ACATACGGAGCAAAATGAATGAATCTA 59.501 33.333 0.00 0.00 0.00 1.98
3307 3843 6.124088 ACGGAGCAAAATGAATGAATCTAC 57.876 37.500 0.00 0.00 0.00 2.59
3308 3844 5.647658 ACGGAGCAAAATGAATGAATCTACA 59.352 36.000 0.00 0.00 0.00 2.74
3309 3845 5.967674 CGGAGCAAAATGAATGAATCTACAC 59.032 40.000 0.00 0.00 0.00 2.90
3310 3846 6.183360 CGGAGCAAAATGAATGAATCTACACT 60.183 38.462 0.00 0.00 0.00 3.55
3311 3847 7.542025 GGAGCAAAATGAATGAATCTACACTT 58.458 34.615 0.00 0.00 0.00 3.16
3312 3848 8.677300 GGAGCAAAATGAATGAATCTACACTTA 58.323 33.333 0.00 0.00 0.00 2.24
3324 3860 8.565896 TGAATCTACACTTAAAATGCATCTGT 57.434 30.769 0.00 0.00 0.00 3.41
3325 3861 9.665719 TGAATCTACACTTAAAATGCATCTGTA 57.334 29.630 0.00 0.00 0.00 2.74
3332 3868 8.840321 ACACTTAAAATGCATCTGTATACATCC 58.160 33.333 5.91 0.00 0.00 3.51
3333 3869 8.011673 CACTTAAAATGCATCTGTATACATCCG 58.988 37.037 5.91 0.00 0.00 4.18
3334 3870 7.715249 ACTTAAAATGCATCTGTATACATCCGT 59.285 33.333 5.91 0.00 0.00 4.69
3335 3871 9.203421 CTTAAAATGCATCTGTATACATCCGTA 57.797 33.333 5.91 0.00 0.00 4.02
3336 3872 9.719355 TTAAAATGCATCTGTATACATCCGTAT 57.281 29.630 5.91 0.18 41.34 3.06
3337 3873 7.601073 AAATGCATCTGTATACATCCGTATG 57.399 36.000 5.91 6.91 38.79 2.39
3339 3875 5.469479 TGCATCTGTATACATCCGTATGTG 58.531 41.667 5.91 0.00 45.99 3.21
3340 3876 4.864806 GCATCTGTATACATCCGTATGTGG 59.135 45.833 5.91 0.00 45.99 4.17
3341 3877 5.566826 GCATCTGTATACATCCGTATGTGGT 60.567 44.000 5.91 0.00 45.99 4.16
3342 3878 6.455647 CATCTGTATACATCCGTATGTGGTT 58.544 40.000 5.91 0.00 45.99 3.67
3343 3879 6.080648 TCTGTATACATCCGTATGTGGTTC 57.919 41.667 5.91 0.00 45.99 3.62
3344 3880 5.010314 TCTGTATACATCCGTATGTGGTTCC 59.990 44.000 5.91 0.00 45.99 3.62
3345 3881 4.897076 TGTATACATCCGTATGTGGTTCCT 59.103 41.667 3.56 0.00 45.99 3.36
3346 3882 6.069994 TGTATACATCCGTATGTGGTTCCTA 58.930 40.000 3.56 0.00 45.99 2.94
3347 3883 5.723672 ATACATCCGTATGTGGTTCCTAG 57.276 43.478 3.56 0.00 45.99 3.02
3348 3884 3.371965 ACATCCGTATGTGGTTCCTAGT 58.628 45.455 0.00 0.00 44.79 2.57
3349 3885 3.132289 ACATCCGTATGTGGTTCCTAGTG 59.868 47.826 0.00 0.00 44.79 2.74
3350 3886 2.104967 TCCGTATGTGGTTCCTAGTGG 58.895 52.381 0.00 0.00 0.00 4.00
3351 3887 2.104967 CCGTATGTGGTTCCTAGTGGA 58.895 52.381 0.00 0.00 41.36 4.02
3365 3901 6.777213 TCCTAGTGGAATCTCTACAAAGAC 57.223 41.667 0.00 0.00 39.87 3.01
3366 3902 6.494952 TCCTAGTGGAATCTCTACAAAGACT 58.505 40.000 0.00 0.00 39.87 3.24
3367 3903 6.954684 TCCTAGTGGAATCTCTACAAAGACTT 59.045 38.462 0.00 0.00 39.87 3.01
3368 3904 8.114102 TCCTAGTGGAATCTCTACAAAGACTTA 58.886 37.037 0.00 0.00 39.87 2.24
3369 3905 8.919145 CCTAGTGGAATCTCTACAAAGACTTAT 58.081 37.037 0.00 0.00 34.57 1.73
3383 3919 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
3384 3920 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
3385 3921 7.909485 AAGACTTATATTTAGGAACGGAGGA 57.091 36.000 0.00 0.00 0.00 3.71
3386 3922 7.909485 AGACTTATATTTAGGAACGGAGGAA 57.091 36.000 0.00 0.00 0.00 3.36
3387 3923 7.953752 AGACTTATATTTAGGAACGGAGGAAG 58.046 38.462 0.00 0.00 0.00 3.46
3388 3924 7.564292 AGACTTATATTTAGGAACGGAGGAAGT 59.436 37.037 0.00 0.00 0.00 3.01
3389 3925 8.773033 ACTTATATTTAGGAACGGAGGAAGTA 57.227 34.615 0.00 0.00 0.00 2.24
3390 3926 8.637099 ACTTATATTTAGGAACGGAGGAAGTAC 58.363 37.037 0.00 0.00 0.00 2.73
3391 3927 8.537728 TTATATTTAGGAACGGAGGAAGTACA 57.462 34.615 0.00 0.00 0.00 2.90
3392 3928 5.750352 ATTTAGGAACGGAGGAAGTACAA 57.250 39.130 0.00 0.00 0.00 2.41
3595 4131 2.935042 ACGTCTCTGTTCGTTGATCAG 58.065 47.619 0.00 0.00 36.93 2.90
3607 4143 1.610522 GTTGATCAGCTGCAAACCTGT 59.389 47.619 9.47 0.00 0.00 4.00
3851 4397 5.395682 AATGCATATGGGTATGTCAATGC 57.604 39.130 0.00 0.00 39.90 3.56
3940 4486 7.830697 TGTATCTCCTTGAATGAATGTTCACAT 59.169 33.333 0.00 0.00 40.49 3.21
3951 4497 5.658468 TGAATGTTCACATGTCTTTTTGCA 58.342 33.333 0.00 0.00 36.56 4.08
3963 4509 7.933033 ACATGTCTTTTTGCATGGAAAACTATT 59.067 29.630 22.82 6.47 44.74 1.73
4265 4835 1.202417 CGACGACATTAGGTGGCATCT 60.202 52.381 5.22 5.22 34.57 2.90
4273 4843 2.520465 TAGGTGGCATCTGTGGTGCG 62.520 60.000 11.36 0.00 43.40 5.34
4341 4911 1.078072 TGGCGCGGGATGTATTTGT 60.078 52.632 8.83 0.00 0.00 2.83
4436 5006 4.052229 CGACGAGGTTCGGTGGCT 62.052 66.667 3.37 0.00 45.59 4.75
4479 5050 4.717313 GTCCCGGGAAGGTGGTGC 62.717 72.222 28.84 6.17 38.74 5.01
4507 5078 2.033448 TGGCGGCGATGAACCTTT 59.967 55.556 12.98 0.00 0.00 3.11
4574 5145 4.586235 GCTGTGGTGGTGTGGGCT 62.586 66.667 0.00 0.00 0.00 5.19
4583 5154 0.535335 TGGTGTGGGCTATTCGTCTC 59.465 55.000 0.00 0.00 0.00 3.36
4584 5155 0.179081 GGTGTGGGCTATTCGTCTCC 60.179 60.000 0.00 0.00 0.00 3.71
4585 5156 0.527817 GTGTGGGCTATTCGTCTCCG 60.528 60.000 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 8.783093 CCGGAAACATAATACATGTGTGAATAT 58.217 33.333 9.11 0.00 31.80 1.28
5 6 7.771361 ACCGGAAACATAATACATGTGTGAATA 59.229 33.333 9.46 0.00 31.80 1.75
6 7 6.601613 ACCGGAAACATAATACATGTGTGAAT 59.398 34.615 9.46 0.00 31.80 2.57
7 8 5.941058 ACCGGAAACATAATACATGTGTGAA 59.059 36.000 9.46 0.00 31.80 3.18
8 9 5.492895 ACCGGAAACATAATACATGTGTGA 58.507 37.500 9.46 0.00 31.80 3.58
9 10 5.811399 ACCGGAAACATAATACATGTGTG 57.189 39.130 9.46 4.81 31.80 3.82
10 11 7.925043 TTAACCGGAAACATAATACATGTGT 57.075 32.000 9.46 0.00 31.80 3.72
11 12 9.872757 GTATTAACCGGAAACATAATACATGTG 57.127 33.333 9.46 0.00 39.40 3.21
12 13 9.616156 TGTATTAACCGGAAACATAATACATGT 57.384 29.630 22.31 2.69 42.13 3.21
20 21 9.048446 GCTAGAATTGTATTAACCGGAAACATA 57.952 33.333 9.46 0.00 0.00 2.29
21 22 7.554835 TGCTAGAATTGTATTAACCGGAAACAT 59.445 33.333 9.46 0.00 0.00 2.71
22 23 6.879993 TGCTAGAATTGTATTAACCGGAAACA 59.120 34.615 9.46 1.34 0.00 2.83
23 24 7.311364 TGCTAGAATTGTATTAACCGGAAAC 57.689 36.000 9.46 0.00 0.00 2.78
24 25 7.771361 TCATGCTAGAATTGTATTAACCGGAAA 59.229 33.333 9.46 1.61 0.00 3.13
25 26 7.276658 TCATGCTAGAATTGTATTAACCGGAA 58.723 34.615 9.46 0.00 0.00 4.30
26 27 6.822442 TCATGCTAGAATTGTATTAACCGGA 58.178 36.000 9.46 0.00 0.00 5.14
27 28 7.490962 TTCATGCTAGAATTGTATTAACCGG 57.509 36.000 0.00 0.00 0.00 5.28
101 102 4.263243 CCTGAAGGAAATATGCCCTAGAGG 60.263 50.000 0.00 0.00 37.39 3.69
102 103 4.594920 TCCTGAAGGAAATATGCCCTAGAG 59.405 45.833 0.00 0.00 42.18 2.43
103 104 4.566837 TCCTGAAGGAAATATGCCCTAGA 58.433 43.478 0.00 0.00 42.18 2.43
104 105 4.982241 TCCTGAAGGAAATATGCCCTAG 57.018 45.455 0.00 0.00 42.18 3.02
136 137 3.782244 CACGCCGACAGCAAGCTC 61.782 66.667 0.00 0.00 44.04 4.09
139 140 2.842394 ATCTCCACGCCGACAGCAAG 62.842 60.000 0.00 0.00 44.04 4.01
140 141 2.942796 ATCTCCACGCCGACAGCAA 61.943 57.895 0.00 0.00 44.04 3.91
141 142 3.381983 ATCTCCACGCCGACAGCA 61.382 61.111 0.00 0.00 44.04 4.41
142 143 2.887568 CATCTCCACGCCGACAGC 60.888 66.667 0.00 0.00 38.52 4.40
143 144 2.202797 CCATCTCCACGCCGACAG 60.203 66.667 0.00 0.00 0.00 3.51
144 145 2.678580 TCCATCTCCACGCCGACA 60.679 61.111 0.00 0.00 0.00 4.35
145 146 2.105128 CTCCATCTCCACGCCGAC 59.895 66.667 0.00 0.00 0.00 4.79
146 147 3.838271 GCTCCATCTCCACGCCGA 61.838 66.667 0.00 0.00 0.00 5.54
147 148 3.842923 AGCTCCATCTCCACGCCG 61.843 66.667 0.00 0.00 0.00 6.46
148 149 2.202987 CAGCTCCATCTCCACGCC 60.203 66.667 0.00 0.00 0.00 5.68
149 150 2.202987 CCAGCTCCATCTCCACGC 60.203 66.667 0.00 0.00 0.00 5.34
150 151 1.440893 CTCCAGCTCCATCTCCACG 59.559 63.158 0.00 0.00 0.00 4.94
151 152 1.145819 GCTCCAGCTCCATCTCCAC 59.854 63.158 0.00 0.00 38.21 4.02
152 153 3.639445 GCTCCAGCTCCATCTCCA 58.361 61.111 0.00 0.00 38.21 3.86
175 176 4.767255 CTCGTGCTCACCTGCCCC 62.767 72.222 0.00 0.00 0.00 5.80
176 177 4.767255 CCTCGTGCTCACCTGCCC 62.767 72.222 0.00 0.00 0.00 5.36
177 178 4.767255 CCCTCGTGCTCACCTGCC 62.767 72.222 0.00 0.00 0.00 4.85
178 179 4.767255 CCCCTCGTGCTCACCTGC 62.767 72.222 0.00 0.00 0.00 4.85
179 180 2.583441 TTCCCCTCGTGCTCACCTG 61.583 63.158 0.00 0.00 0.00 4.00
180 181 2.203788 TTCCCCTCGTGCTCACCT 60.204 61.111 0.00 0.00 0.00 4.00
181 182 2.047179 GTTCCCCTCGTGCTCACC 60.047 66.667 0.00 0.00 0.00 4.02
182 183 1.374758 CTGTTCCCCTCGTGCTCAC 60.375 63.158 0.00 0.00 0.00 3.51
183 184 1.533033 TCTGTTCCCCTCGTGCTCA 60.533 57.895 0.00 0.00 0.00 4.26
184 185 1.216710 CTCTGTTCCCCTCGTGCTC 59.783 63.158 0.00 0.00 0.00 4.26
185 186 2.286523 CCTCTGTTCCCCTCGTGCT 61.287 63.158 0.00 0.00 0.00 4.40
186 187 2.266055 CCTCTGTTCCCCTCGTGC 59.734 66.667 0.00 0.00 0.00 5.34
187 188 2.266055 GCCTCTGTTCCCCTCGTG 59.734 66.667 0.00 0.00 0.00 4.35
188 189 3.382832 CGCCTCTGTTCCCCTCGT 61.383 66.667 0.00 0.00 0.00 4.18
189 190 4.148825 CCGCCTCTGTTCCCCTCG 62.149 72.222 0.00 0.00 0.00 4.63
190 191 2.683933 TCCGCCTCTGTTCCCCTC 60.684 66.667 0.00 0.00 0.00 4.30
191 192 3.003763 GTCCGCCTCTGTTCCCCT 61.004 66.667 0.00 0.00 0.00 4.79
192 193 4.452733 CGTCCGCCTCTGTTCCCC 62.453 72.222 0.00 0.00 0.00 4.81
195 196 4.415332 TCGCGTCCGCCTCTGTTC 62.415 66.667 5.77 0.00 37.98 3.18
196 197 4.421479 CTCGCGTCCGCCTCTGTT 62.421 66.667 5.77 0.00 37.98 3.16
203 204 4.814294 AATCCACCTCGCGTCCGC 62.814 66.667 5.77 0.68 37.85 5.54
204 205 2.582498 GAATCCACCTCGCGTCCG 60.582 66.667 5.77 0.00 0.00 4.79
205 206 2.582498 CGAATCCACCTCGCGTCC 60.582 66.667 5.77 0.00 0.00 4.79
206 207 1.411493 GAACGAATCCACCTCGCGTC 61.411 60.000 5.77 0.00 39.97 5.19
207 208 1.445582 GAACGAATCCACCTCGCGT 60.446 57.895 5.77 0.00 39.97 6.01
208 209 3.384927 GAACGAATCCACCTCGCG 58.615 61.111 0.00 0.00 39.97 5.87
221 222 4.630069 ACCTGAATTAATTCTGTCGGAACG 59.370 41.667 24.77 13.76 45.26 3.95
222 223 5.163754 CCACCTGAATTAATTCTGTCGGAAC 60.164 44.000 24.77 1.06 36.70 3.62
223 224 4.941263 CCACCTGAATTAATTCTGTCGGAA 59.059 41.667 24.77 5.98 37.67 4.30
224 225 4.224147 TCCACCTGAATTAATTCTGTCGGA 59.776 41.667 24.77 24.36 37.67 4.55
225 226 4.513442 TCCACCTGAATTAATTCTGTCGG 58.487 43.478 24.77 22.99 37.67 4.79
226 227 5.419542 TCTCCACCTGAATTAATTCTGTCG 58.580 41.667 24.77 17.12 37.67 4.35
227 228 6.644347 TCTCTCCACCTGAATTAATTCTGTC 58.356 40.000 24.77 4.09 37.67 3.51
228 229 6.214412 ACTCTCTCCACCTGAATTAATTCTGT 59.786 38.462 24.77 19.19 37.67 3.41
229 230 6.538021 CACTCTCTCCACCTGAATTAATTCTG 59.462 42.308 24.77 23.23 37.67 3.02
230 231 6.648192 CACTCTCTCCACCTGAATTAATTCT 58.352 40.000 24.77 6.23 37.67 2.40
231 232 5.295540 GCACTCTCTCCACCTGAATTAATTC 59.704 44.000 19.37 19.37 37.31 2.17
232 233 5.189180 GCACTCTCTCCACCTGAATTAATT 58.811 41.667 0.00 0.00 0.00 1.40
233 234 4.681781 CGCACTCTCTCCACCTGAATTAAT 60.682 45.833 0.00 0.00 0.00 1.40
234 235 3.368427 CGCACTCTCTCCACCTGAATTAA 60.368 47.826 0.00 0.00 0.00 1.40
235 236 2.166459 CGCACTCTCTCCACCTGAATTA 59.834 50.000 0.00 0.00 0.00 1.40
236 237 1.066573 CGCACTCTCTCCACCTGAATT 60.067 52.381 0.00 0.00 0.00 2.17
237 238 0.534412 CGCACTCTCTCCACCTGAAT 59.466 55.000 0.00 0.00 0.00 2.57
238 239 1.536073 CCGCACTCTCTCCACCTGAA 61.536 60.000 0.00 0.00 0.00 3.02
239 240 1.979155 CCGCACTCTCTCCACCTGA 60.979 63.158 0.00 0.00 0.00 3.86
240 241 2.575993 CCGCACTCTCTCCACCTG 59.424 66.667 0.00 0.00 0.00 4.00
241 242 2.681778 CCCGCACTCTCTCCACCT 60.682 66.667 0.00 0.00 0.00 4.00
242 243 2.584391 AACCCGCACTCTCTCCACC 61.584 63.158 0.00 0.00 0.00 4.61
243 244 1.374758 CAACCCGCACTCTCTCCAC 60.375 63.158 0.00 0.00 0.00 4.02
244 245 1.118965 TTCAACCCGCACTCTCTCCA 61.119 55.000 0.00 0.00 0.00 3.86
245 246 0.250513 ATTCAACCCGCACTCTCTCC 59.749 55.000 0.00 0.00 0.00 3.71
246 247 2.482142 CCTATTCAACCCGCACTCTCTC 60.482 54.545 0.00 0.00 0.00 3.20
247 248 1.482593 CCTATTCAACCCGCACTCTCT 59.517 52.381 0.00 0.00 0.00 3.10
248 249 1.473434 CCCTATTCAACCCGCACTCTC 60.473 57.143 0.00 0.00 0.00 3.20
249 250 0.541863 CCCTATTCAACCCGCACTCT 59.458 55.000 0.00 0.00 0.00 3.24
250 251 0.539986 TCCCTATTCAACCCGCACTC 59.460 55.000 0.00 0.00 0.00 3.51
251 252 0.988832 TTCCCTATTCAACCCGCACT 59.011 50.000 0.00 0.00 0.00 4.40
252 253 1.828979 TTTCCCTATTCAACCCGCAC 58.171 50.000 0.00 0.00 0.00 5.34
253 254 2.588464 TTTTCCCTATTCAACCCGCA 57.412 45.000 0.00 0.00 0.00 5.69
254 255 2.165641 CCTTTTTCCCTATTCAACCCGC 59.834 50.000 0.00 0.00 0.00 6.13
255 256 2.165641 GCCTTTTTCCCTATTCAACCCG 59.834 50.000 0.00 0.00 0.00 5.28
256 257 3.169908 TGCCTTTTTCCCTATTCAACCC 58.830 45.455 0.00 0.00 0.00 4.11
257 258 3.195610 CCTGCCTTTTTCCCTATTCAACC 59.804 47.826 0.00 0.00 0.00 3.77
258 259 3.195610 CCCTGCCTTTTTCCCTATTCAAC 59.804 47.826 0.00 0.00 0.00 3.18
259 260 3.440127 CCCTGCCTTTTTCCCTATTCAA 58.560 45.455 0.00 0.00 0.00 2.69
260 261 2.292192 CCCCTGCCTTTTTCCCTATTCA 60.292 50.000 0.00 0.00 0.00 2.57
261 262 2.388735 CCCCTGCCTTTTTCCCTATTC 58.611 52.381 0.00 0.00 0.00 1.75
262 263 1.008327 CCCCCTGCCTTTTTCCCTATT 59.992 52.381 0.00 0.00 0.00 1.73
263 264 0.636647 CCCCCTGCCTTTTTCCCTAT 59.363 55.000 0.00 0.00 0.00 2.57
264 265 0.778479 ACCCCCTGCCTTTTTCCCTA 60.778 55.000 0.00 0.00 0.00 3.53
265 266 1.674931 AACCCCCTGCCTTTTTCCCT 61.675 55.000 0.00 0.00 0.00 4.20
266 267 0.766674 AAACCCCCTGCCTTTTTCCC 60.767 55.000 0.00 0.00 0.00 3.97
267 268 0.685097 GAAACCCCCTGCCTTTTTCC 59.315 55.000 0.00 0.00 0.00 3.13
268 269 1.344438 CAGAAACCCCCTGCCTTTTTC 59.656 52.381 0.00 0.00 0.00 2.29
269 270 1.423584 CAGAAACCCCCTGCCTTTTT 58.576 50.000 0.00 0.00 0.00 1.94
270 271 3.147826 CAGAAACCCCCTGCCTTTT 57.852 52.632 0.00 0.00 0.00 2.27
271 272 4.952482 CAGAAACCCCCTGCCTTT 57.048 55.556 0.00 0.00 0.00 3.11
276 277 1.069049 CACTTTTGCAGAAACCCCCTG 59.931 52.381 0.00 0.00 34.88 4.45
277 278 1.413118 CACTTTTGCAGAAACCCCCT 58.587 50.000 0.00 0.00 0.00 4.79
278 279 3.986970 CACTTTTGCAGAAACCCCC 57.013 52.632 0.00 0.00 0.00 5.40
289 290 1.005294 GGTCAGCGCATGCACTTTTG 61.005 55.000 19.57 7.92 46.23 2.44
290 291 1.286880 GGTCAGCGCATGCACTTTT 59.713 52.632 19.57 0.00 46.23 2.27
291 292 2.956987 GGTCAGCGCATGCACTTT 59.043 55.556 19.57 0.00 46.23 2.66
292 293 3.425713 CGGTCAGCGCATGCACTT 61.426 61.111 19.57 0.00 46.23 3.16
293 294 3.670637 ATCGGTCAGCGCATGCACT 62.671 57.895 19.57 11.06 46.23 4.40
294 295 3.160557 GATCGGTCAGCGCATGCAC 62.161 63.158 19.57 8.32 46.23 4.57
295 296 2.891936 GATCGGTCAGCGCATGCA 60.892 61.111 19.57 0.00 46.23 3.96
296 297 3.643978 GGATCGGTCAGCGCATGC 61.644 66.667 11.47 7.91 43.24 4.06
297 298 2.202919 TGGATCGGTCAGCGCATG 60.203 61.111 11.47 5.22 0.00 4.06
298 299 2.107750 CTGGATCGGTCAGCGCAT 59.892 61.111 11.47 0.00 0.00 4.73
299 300 4.819761 GCTGGATCGGTCAGCGCA 62.820 66.667 11.47 0.00 46.33 6.09
303 304 2.187946 GGTGGCTGGATCGGTCAG 59.812 66.667 0.00 0.00 35.49 3.51
304 305 2.284625 AGGTGGCTGGATCGGTCA 60.285 61.111 0.00 0.00 0.00 4.02
305 306 2.187946 CAGGTGGCTGGATCGGTC 59.812 66.667 0.00 0.00 0.00 4.79
316 317 1.880819 GACAATTGGCAGCCAGGTGG 61.881 60.000 23.66 14.22 33.81 4.61
317 318 1.588082 GACAATTGGCAGCCAGGTG 59.412 57.895 15.50 18.30 33.81 4.00
318 319 1.973281 CGACAATTGGCAGCCAGGT 60.973 57.895 15.50 14.38 33.81 4.00
319 320 1.651240 CTCGACAATTGGCAGCCAGG 61.651 60.000 15.50 11.08 33.81 4.45
320 321 1.798735 CTCGACAATTGGCAGCCAG 59.201 57.895 15.50 5.86 33.81 4.85
321 322 2.334946 GCTCGACAATTGGCAGCCA 61.335 57.895 11.22 11.22 0.00 4.75
322 323 2.042831 AGCTCGACAATTGGCAGCC 61.043 57.895 23.65 3.66 30.77 4.85
323 324 1.136147 CAGCTCGACAATTGGCAGC 59.864 57.895 21.27 21.27 0.00 5.25
324 325 0.167470 CACAGCTCGACAATTGGCAG 59.833 55.000 12.81 9.07 0.00 4.85
325 326 0.250252 TCACAGCTCGACAATTGGCA 60.250 50.000 12.81 0.00 0.00 4.92
326 327 1.089920 ATCACAGCTCGACAATTGGC 58.910 50.000 10.83 5.64 0.00 4.52
327 328 2.159476 CCAATCACAGCTCGACAATTGG 60.159 50.000 10.83 7.90 37.77 3.16
328 329 2.730090 GCCAATCACAGCTCGACAATTG 60.730 50.000 3.24 3.24 0.00 2.32
329 330 1.470098 GCCAATCACAGCTCGACAATT 59.530 47.619 0.00 0.00 0.00 2.32
330 331 1.089920 GCCAATCACAGCTCGACAAT 58.910 50.000 0.00 0.00 0.00 2.71
331 332 0.955428 GGCCAATCACAGCTCGACAA 60.955 55.000 0.00 0.00 0.00 3.18
332 333 1.375908 GGCCAATCACAGCTCGACA 60.376 57.895 0.00 0.00 0.00 4.35
333 334 1.078848 AGGCCAATCACAGCTCGAC 60.079 57.895 5.01 0.00 0.00 4.20
334 335 1.078918 CAGGCCAATCACAGCTCGA 60.079 57.895 5.01 0.00 0.00 4.04
335 336 1.078918 TCAGGCCAATCACAGCTCG 60.079 57.895 5.01 0.00 0.00 5.03
336 337 0.251354 TCTCAGGCCAATCACAGCTC 59.749 55.000 5.01 0.00 0.00 4.09
337 338 0.035630 GTCTCAGGCCAATCACAGCT 60.036 55.000 5.01 0.00 0.00 4.24
338 339 0.035630 AGTCTCAGGCCAATCACAGC 60.036 55.000 5.01 0.00 0.00 4.40
339 340 3.616956 TTAGTCTCAGGCCAATCACAG 57.383 47.619 5.01 0.00 0.00 3.66
340 341 4.019411 TGATTTAGTCTCAGGCCAATCACA 60.019 41.667 5.01 0.00 0.00 3.58
341 342 4.517285 TGATTTAGTCTCAGGCCAATCAC 58.483 43.478 5.01 0.00 0.00 3.06
342 343 4.842531 TGATTTAGTCTCAGGCCAATCA 57.157 40.909 5.01 6.12 0.00 2.57
343 344 5.238214 GTGATGATTTAGTCTCAGGCCAATC 59.762 44.000 5.01 3.16 0.00 2.67
344 345 5.128919 GTGATGATTTAGTCTCAGGCCAAT 58.871 41.667 5.01 0.00 0.00 3.16
345 346 4.019411 TGTGATGATTTAGTCTCAGGCCAA 60.019 41.667 5.01 0.00 0.00 4.52
346 347 3.519107 TGTGATGATTTAGTCTCAGGCCA 59.481 43.478 5.01 0.00 0.00 5.36
347 348 4.142609 TGTGATGATTTAGTCTCAGGCC 57.857 45.455 0.00 0.00 0.00 5.19
348 349 5.363101 TCATGTGATGATTTAGTCTCAGGC 58.637 41.667 0.00 0.00 33.59 4.85
349 350 5.990386 CCTCATGTGATGATTTAGTCTCAGG 59.010 44.000 0.00 0.00 38.85 3.86
350 351 6.580788 ACCTCATGTGATGATTTAGTCTCAG 58.419 40.000 0.00 0.00 38.85 3.35
351 352 6.550938 ACCTCATGTGATGATTTAGTCTCA 57.449 37.500 0.00 0.00 38.85 3.27
366 367 0.540365 CCCCAACTTGCACCTCATGT 60.540 55.000 0.00 0.00 34.90 3.21
367 368 0.540365 ACCCCAACTTGCACCTCATG 60.540 55.000 0.00 0.00 0.00 3.07
368 369 1.072266 TACCCCAACTTGCACCTCAT 58.928 50.000 0.00 0.00 0.00 2.90
369 370 1.072266 ATACCCCAACTTGCACCTCA 58.928 50.000 0.00 0.00 0.00 3.86
370 371 1.004277 TCATACCCCAACTTGCACCTC 59.996 52.381 0.00 0.00 0.00 3.85
371 372 1.072266 TCATACCCCAACTTGCACCT 58.928 50.000 0.00 0.00 0.00 4.00
372 373 1.750778 CATCATACCCCAACTTGCACC 59.249 52.381 0.00 0.00 0.00 5.01
373 374 1.750778 CCATCATACCCCAACTTGCAC 59.249 52.381 0.00 0.00 0.00 4.57
374 375 1.638070 TCCATCATACCCCAACTTGCA 59.362 47.619 0.00 0.00 0.00 4.08
375 376 2.301346 CTCCATCATACCCCAACTTGC 58.699 52.381 0.00 0.00 0.00 4.01
376 377 3.054434 TGACTCCATCATACCCCAACTTG 60.054 47.826 0.00 0.00 29.99 3.16
377 378 3.189606 TGACTCCATCATACCCCAACTT 58.810 45.455 0.00 0.00 29.99 2.66
378 379 2.845659 TGACTCCATCATACCCCAACT 58.154 47.619 0.00 0.00 29.99 3.16
379 380 3.054361 ACTTGACTCCATCATACCCCAAC 60.054 47.826 0.00 0.00 37.11 3.77
380 381 3.189606 ACTTGACTCCATCATACCCCAA 58.810 45.455 0.00 0.00 37.11 4.12
381 382 2.845659 ACTTGACTCCATCATACCCCA 58.154 47.619 0.00 0.00 37.11 4.96
382 383 3.933861 AACTTGACTCCATCATACCCC 57.066 47.619 0.00 0.00 37.11 4.95
383 384 4.142381 GCAAAACTTGACTCCATCATACCC 60.142 45.833 0.00 0.00 37.11 3.69
384 385 4.458989 TGCAAAACTTGACTCCATCATACC 59.541 41.667 0.00 0.00 37.11 2.73
385 386 5.627499 TGCAAAACTTGACTCCATCATAC 57.373 39.130 0.00 0.00 37.11 2.39
386 387 6.003326 TCTTGCAAAACTTGACTCCATCATA 58.997 36.000 0.00 0.00 37.11 2.15
387 388 4.828939 TCTTGCAAAACTTGACTCCATCAT 59.171 37.500 0.00 0.00 37.11 2.45
388 389 4.206375 TCTTGCAAAACTTGACTCCATCA 58.794 39.130 0.00 0.00 34.65 3.07
389 390 4.836125 TCTTGCAAAACTTGACTCCATC 57.164 40.909 0.00 0.00 0.00 3.51
390 391 5.510179 CCAATCTTGCAAAACTTGACTCCAT 60.510 40.000 13.85 0.00 0.00 3.41
391 392 4.202141 CCAATCTTGCAAAACTTGACTCCA 60.202 41.667 13.85 0.00 0.00 3.86
392 393 4.301628 CCAATCTTGCAAAACTTGACTCC 58.698 43.478 13.85 0.00 0.00 3.85
393 394 4.037923 TCCCAATCTTGCAAAACTTGACTC 59.962 41.667 13.85 0.00 0.00 3.36
394 395 3.960102 TCCCAATCTTGCAAAACTTGACT 59.040 39.130 13.85 0.00 0.00 3.41
395 396 4.051237 GTCCCAATCTTGCAAAACTTGAC 58.949 43.478 13.85 7.55 0.00 3.18
396 397 3.960102 AGTCCCAATCTTGCAAAACTTGA 59.040 39.130 13.85 2.93 0.00 3.02
397 398 4.053295 CAGTCCCAATCTTGCAAAACTTG 58.947 43.478 0.00 4.58 0.00 3.16
398 399 3.960102 TCAGTCCCAATCTTGCAAAACTT 59.040 39.130 0.00 0.00 0.00 2.66
399 400 3.565307 TCAGTCCCAATCTTGCAAAACT 58.435 40.909 0.00 0.00 0.00 2.66
400 401 4.320608 TTCAGTCCCAATCTTGCAAAAC 57.679 40.909 0.00 0.00 0.00 2.43
401 402 4.588106 TGATTCAGTCCCAATCTTGCAAAA 59.412 37.500 0.00 0.00 32.32 2.44
402 403 4.151121 TGATTCAGTCCCAATCTTGCAAA 58.849 39.130 0.00 0.00 32.32 3.68
403 404 3.765381 TGATTCAGTCCCAATCTTGCAA 58.235 40.909 0.00 0.00 32.32 4.08
404 405 3.438216 TGATTCAGTCCCAATCTTGCA 57.562 42.857 0.00 0.00 32.32 4.08
405 406 3.949754 TGATGATTCAGTCCCAATCTTGC 59.050 43.478 0.00 0.00 32.32 4.01
406 407 4.945543 TGTGATGATTCAGTCCCAATCTTG 59.054 41.667 0.00 0.00 32.32 3.02
407 408 5.183530 TGTGATGATTCAGTCCCAATCTT 57.816 39.130 0.00 0.00 32.32 2.40
408 409 4.849813 TGTGATGATTCAGTCCCAATCT 57.150 40.909 0.00 0.00 32.32 2.40
409 410 5.826737 AGAATGTGATGATTCAGTCCCAATC 59.173 40.000 0.00 0.00 35.16 2.67
410 411 5.593095 CAGAATGTGATGATTCAGTCCCAAT 59.407 40.000 0.00 0.00 35.16 3.16
411 412 4.945543 CAGAATGTGATGATTCAGTCCCAA 59.054 41.667 0.00 0.00 35.16 4.12
412 413 4.520179 CAGAATGTGATGATTCAGTCCCA 58.480 43.478 0.00 0.00 35.16 4.37
427 428 6.986793 AGGTACCCTAACTTGCACAGAATGT 61.987 44.000 8.74 0.00 41.54 2.71
428 429 3.689649 GGTACCCTAACTTGCACAGAATG 59.310 47.826 0.00 0.00 46.00 2.67
429 430 3.587506 AGGTACCCTAACTTGCACAGAAT 59.412 43.478 8.74 0.00 28.47 2.40
430 431 2.976882 AGGTACCCTAACTTGCACAGAA 59.023 45.455 8.74 0.00 28.47 3.02
431 432 2.301870 CAGGTACCCTAACTTGCACAGA 59.698 50.000 8.74 0.00 29.64 3.41
432 433 2.615493 CCAGGTACCCTAACTTGCACAG 60.615 54.545 8.74 0.00 29.64 3.66
433 434 1.349688 CCAGGTACCCTAACTTGCACA 59.650 52.381 8.74 0.00 29.64 4.57
434 435 1.339727 CCCAGGTACCCTAACTTGCAC 60.340 57.143 8.74 0.00 29.64 4.57
435 436 0.988832 CCCAGGTACCCTAACTTGCA 59.011 55.000 8.74 0.00 29.64 4.08
436 437 0.255033 CCCCAGGTACCCTAACTTGC 59.745 60.000 8.74 0.00 29.64 4.01
437 438 1.280998 CACCCCAGGTACCCTAACTTG 59.719 57.143 8.74 0.00 32.11 3.16
438 439 1.665137 CACCCCAGGTACCCTAACTT 58.335 55.000 8.74 0.00 32.11 2.66
439 440 0.912968 GCACCCCAGGTACCCTAACT 60.913 60.000 8.74 0.00 32.11 2.24
440 441 0.912968 AGCACCCCAGGTACCCTAAC 60.913 60.000 8.74 0.00 32.11 2.34
441 442 0.717801 TAGCACCCCAGGTACCCTAA 59.282 55.000 8.74 0.00 32.11 2.69
442 443 0.946522 ATAGCACCCCAGGTACCCTA 59.053 55.000 8.74 1.02 32.11 3.53
443 444 0.045778 AATAGCACCCCAGGTACCCT 59.954 55.000 8.74 0.00 32.11 4.34
444 445 1.419012 GTAATAGCACCCCAGGTACCC 59.581 57.143 8.74 0.00 32.11 3.69
445 446 1.419012 GGTAATAGCACCCCAGGTACC 59.581 57.143 2.73 2.73 32.11 3.34
446 447 2.367894 GAGGTAATAGCACCCCAGGTAC 59.632 54.545 0.00 0.00 39.62 3.34
447 448 2.686119 GAGGTAATAGCACCCCAGGTA 58.314 52.381 0.00 0.00 39.62 3.08
448 449 1.508256 GAGGTAATAGCACCCCAGGT 58.492 55.000 0.00 0.00 39.62 4.00
449 450 0.393077 CGAGGTAATAGCACCCCAGG 59.607 60.000 0.00 0.00 39.62 4.45
450 451 0.249911 GCGAGGTAATAGCACCCCAG 60.250 60.000 0.00 0.00 39.62 4.45
451 452 0.978667 TGCGAGGTAATAGCACCCCA 60.979 55.000 0.00 0.00 39.62 4.96
452 453 0.179468 TTGCGAGGTAATAGCACCCC 59.821 55.000 0.00 0.00 39.45 4.95
453 454 1.296727 GTTGCGAGGTAATAGCACCC 58.703 55.000 0.00 0.00 39.45 4.61
454 455 1.296727 GGTTGCGAGGTAATAGCACC 58.703 55.000 0.00 0.00 39.45 5.01
455 456 0.928229 CGGTTGCGAGGTAATAGCAC 59.072 55.000 0.00 0.00 39.45 4.40
456 457 0.818938 TCGGTTGCGAGGTAATAGCA 59.181 50.000 0.00 0.00 37.81 3.49
457 458 1.591619 GTTCGGTTGCGAGGTAATAGC 59.408 52.381 0.00 0.00 0.00 2.97
458 459 2.199236 GGTTCGGTTGCGAGGTAATAG 58.801 52.381 0.00 0.00 0.00 1.73
459 460 1.134729 GGGTTCGGTTGCGAGGTAATA 60.135 52.381 0.00 0.00 0.00 0.98
460 461 0.392060 GGGTTCGGTTGCGAGGTAAT 60.392 55.000 0.00 0.00 0.00 1.89
461 462 1.004679 GGGTTCGGTTGCGAGGTAA 60.005 57.895 0.00 0.00 0.00 2.85
462 463 1.756408 TTGGGTTCGGTTGCGAGGTA 61.756 55.000 0.00 0.00 0.00 3.08
463 464 2.612095 TTTGGGTTCGGTTGCGAGGT 62.612 55.000 0.00 0.00 0.00 3.85
464 465 1.852067 CTTTGGGTTCGGTTGCGAGG 61.852 60.000 0.00 0.00 0.00 4.63
465 466 1.574428 CTTTGGGTTCGGTTGCGAG 59.426 57.895 0.00 0.00 0.00 5.03
466 467 1.894756 CCTTTGGGTTCGGTTGCGA 60.895 57.895 0.00 0.00 0.00 5.10
467 468 0.885596 TACCTTTGGGTTCGGTTGCG 60.886 55.000 0.00 0.00 44.73 4.85
492 493 2.106566 TGGTTGCAAGATGTTTGGTGT 58.893 42.857 0.00 0.00 0.00 4.16
503 504 1.928503 CTGTTGCTGTTTGGTTGCAAG 59.071 47.619 0.00 0.00 45.55 4.01
554 555 0.600255 AAGTGAGTTTGTCTCCGCCG 60.600 55.000 0.00 0.00 42.12 6.46
555 556 1.594331 AAAGTGAGTTTGTCTCCGCC 58.406 50.000 0.00 0.00 42.12 6.13
556 557 3.692791 AAAAAGTGAGTTTGTCTCCGC 57.307 42.857 0.00 0.00 42.12 5.54
596 597 5.702209 TCCTTCGCGGTACTCTTTAATTTTT 59.298 36.000 6.13 0.00 0.00 1.94
597 598 5.240121 TCCTTCGCGGTACTCTTTAATTTT 58.760 37.500 6.13 0.00 0.00 1.82
598 599 4.824289 TCCTTCGCGGTACTCTTTAATTT 58.176 39.130 6.13 0.00 0.00 1.82
599 600 4.460948 TCCTTCGCGGTACTCTTTAATT 57.539 40.909 6.13 0.00 0.00 1.40
600 601 4.460948 TTCCTTCGCGGTACTCTTTAAT 57.539 40.909 6.13 0.00 0.00 1.40
606 607 2.666994 CTCTTTTTCCTTCGCGGTACTC 59.333 50.000 6.13 0.00 0.00 2.59
650 688 2.592861 CGGCAGCAGATTAGGGGC 60.593 66.667 0.00 0.00 0.00 5.80
804 867 4.416738 GGAGTGGAGGCAGGTGGC 62.417 72.222 0.00 0.00 43.74 5.01
888 957 3.921767 TTCGCCTCTGCTGCTGTCG 62.922 63.158 0.00 6.71 34.43 4.35
1138 1216 3.224324 GTAGCGGCGGGATCTCCA 61.224 66.667 9.78 0.00 37.91 3.86
1214 1292 2.481568 GTCACTTACCGCCAACCTAAAC 59.518 50.000 0.00 0.00 0.00 2.01
1215 1293 2.369532 AGTCACTTACCGCCAACCTAAA 59.630 45.455 0.00 0.00 0.00 1.85
1366 1444 3.983044 ATTGAGTGGTAGAACTGGGAC 57.017 47.619 0.00 0.00 0.00 4.46
1390 1468 2.860735 CCGAGTTGCTACAGAATACTGC 59.139 50.000 0.13 0.00 46.95 4.40
1520 1598 3.062639 GCATCATTGGTAGACTCACAACG 59.937 47.826 0.00 0.00 0.00 4.10
1543 1621 4.660789 ATGCTTCATAGAAACCCATTGC 57.339 40.909 0.00 0.00 0.00 3.56
1544 1622 6.211587 TCAATGCTTCATAGAAACCCATTG 57.788 37.500 14.56 14.56 39.36 2.82
1545 1623 7.270047 CAATCAATGCTTCATAGAAACCCATT 58.730 34.615 0.00 0.00 0.00 3.16
1546 1624 6.183360 CCAATCAATGCTTCATAGAAACCCAT 60.183 38.462 0.00 0.00 0.00 4.00
1547 1625 5.127519 CCAATCAATGCTTCATAGAAACCCA 59.872 40.000 0.00 0.00 0.00 4.51
1548 1626 5.127682 ACCAATCAATGCTTCATAGAAACCC 59.872 40.000 0.00 0.00 0.00 4.11
1549 1627 6.212888 ACCAATCAATGCTTCATAGAAACC 57.787 37.500 0.00 0.00 0.00 3.27
1550 1628 6.470235 CGAACCAATCAATGCTTCATAGAAAC 59.530 38.462 0.00 0.00 0.00 2.78
1551 1629 6.404623 CCGAACCAATCAATGCTTCATAGAAA 60.405 38.462 0.00 0.00 0.00 2.52
1552 1630 5.066375 CCGAACCAATCAATGCTTCATAGAA 59.934 40.000 0.00 0.00 0.00 2.10
1553 1631 4.576053 CCGAACCAATCAATGCTTCATAGA 59.424 41.667 0.00 0.00 0.00 1.98
1554 1632 4.336433 ACCGAACCAATCAATGCTTCATAG 59.664 41.667 0.00 0.00 0.00 2.23
1555 1633 4.269183 ACCGAACCAATCAATGCTTCATA 58.731 39.130 0.00 0.00 0.00 2.15
1556 1634 3.091545 ACCGAACCAATCAATGCTTCAT 58.908 40.909 0.00 0.00 0.00 2.57
1557 1635 2.513753 ACCGAACCAATCAATGCTTCA 58.486 42.857 0.00 0.00 0.00 3.02
1558 1636 3.689649 ACTACCGAACCAATCAATGCTTC 59.310 43.478 0.00 0.00 0.00 3.86
1559 1637 3.686016 ACTACCGAACCAATCAATGCTT 58.314 40.909 0.00 0.00 0.00 3.91
1560 1638 3.350219 ACTACCGAACCAATCAATGCT 57.650 42.857 0.00 0.00 0.00 3.79
1561 1639 4.554723 GCATACTACCGAACCAATCAATGC 60.555 45.833 0.00 0.00 0.00 3.56
1562 1640 4.816385 AGCATACTACCGAACCAATCAATG 59.184 41.667 0.00 0.00 0.00 2.82
1623 1701 6.906157 ATCAATTGTCCTTGATTTGTCTGT 57.094 33.333 5.13 0.00 41.89 3.41
1777 1855 2.540101 CTCAGGCGACGGCTTAAAATAG 59.460 50.000 22.67 8.75 35.88 1.73
1993 2074 0.467290 TGCGGCCTTTTGTTCTTCCT 60.467 50.000 0.00 0.00 0.00 3.36
2009 2090 2.094894 CACCTAGCAGAAACTTGATGCG 59.905 50.000 0.00 0.00 44.64 4.73
2754 3287 1.826720 TGGACGTGACATACTTACCCC 59.173 52.381 0.00 0.00 0.00 4.95
2927 3460 9.908152 AACTTAGTACCAATCATAAAAGCAAAC 57.092 29.630 0.00 0.00 0.00 2.93
3058 3594 2.518112 TGCAGACGCTTGGGCAAA 60.518 55.556 0.00 0.00 39.64 3.68
3169 3705 7.279758 ACAAGTTTTACACCACCAAATGAATTG 59.720 33.333 0.00 0.00 38.84 2.32
3230 3766 4.098894 ACTTGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
3231 3767 4.161754 AGACTTGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
3232 3768 5.340439 AGACTTGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
3233 3769 6.649557 ACAAAGACTTGTATTTAGGAACGGAG 59.350 38.462 0.00 0.00 44.14 4.63
3234 3770 6.527423 ACAAAGACTTGTATTTAGGAACGGA 58.473 36.000 0.00 0.00 44.14 4.69
3235 3771 6.796705 ACAAAGACTTGTATTTAGGAACGG 57.203 37.500 0.00 0.00 44.14 4.44
3236 3772 8.752766 TCTACAAAGACTTGTATTTAGGAACG 57.247 34.615 0.00 0.00 44.95 3.95
3237 3773 9.924650 TCTCTACAAAGACTTGTATTTAGGAAC 57.075 33.333 0.00 0.00 44.95 3.62
3243 3779 9.220767 GTGGAATCTCTACAAAGACTTGTATTT 57.779 33.333 0.00 0.00 44.95 1.40
3244 3780 8.598041 AGTGGAATCTCTACAAAGACTTGTATT 58.402 33.333 0.00 0.00 44.95 1.89
3245 3781 8.140112 AGTGGAATCTCTACAAAGACTTGTAT 57.860 34.615 0.00 0.00 44.95 2.29
3246 3782 7.540474 AGTGGAATCTCTACAAAGACTTGTA 57.460 36.000 0.00 0.00 44.14 2.41
3248 3784 7.831753 TCTAGTGGAATCTCTACAAAGACTTG 58.168 38.462 0.00 0.00 38.61 3.16
3249 3785 8.474025 CATCTAGTGGAATCTCTACAAAGACTT 58.526 37.037 0.00 0.00 29.78 3.01
3250 3786 8.006298 CATCTAGTGGAATCTCTACAAAGACT 57.994 38.462 0.00 0.00 29.78 3.24
3267 3803 4.083217 GCTCCGTATGTAGTCCATCTAGTG 60.083 50.000 0.00 0.00 34.86 2.74
3268 3804 4.073549 GCTCCGTATGTAGTCCATCTAGT 58.926 47.826 0.00 0.00 34.86 2.57
3269 3805 4.072839 TGCTCCGTATGTAGTCCATCTAG 58.927 47.826 0.00 0.00 34.86 2.43
3270 3806 4.094830 TGCTCCGTATGTAGTCCATCTA 57.905 45.455 0.00 0.00 34.86 1.98
3271 3807 2.945456 TGCTCCGTATGTAGTCCATCT 58.055 47.619 0.00 0.00 34.86 2.90
3272 3808 3.728076 TTGCTCCGTATGTAGTCCATC 57.272 47.619 0.00 0.00 34.86 3.51
3273 3809 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
3274 3810 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
3275 3811 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
3276 3812 6.257849 TCATTCATTTTGCTCCGTATGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
3277 3813 6.112734 TCATTCATTTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
3278 3814 6.603237 TCATTCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
3279 3815 6.993786 TTCATTCATTTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
3280 3816 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
3281 3817 6.732154 AGATTCATTCATTTTGCTCCGTATG 58.268 36.000 0.00 0.00 0.00 2.39
3282 3818 6.949352 AGATTCATTCATTTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
3283 3819 6.821160 TGTAGATTCATTCATTTTGCTCCGTA 59.179 34.615 0.00 0.00 0.00 4.02
3284 3820 5.647658 TGTAGATTCATTCATTTTGCTCCGT 59.352 36.000 0.00 0.00 0.00 4.69
3285 3821 5.967674 GTGTAGATTCATTCATTTTGCTCCG 59.032 40.000 0.00 0.00 0.00 4.63
3286 3822 7.093322 AGTGTAGATTCATTCATTTTGCTCC 57.907 36.000 0.00 0.00 0.00 4.70
3298 3834 9.182214 ACAGATGCATTTTAAGTGTAGATTCAT 57.818 29.630 0.00 0.00 0.00 2.57
3299 3835 8.565896 ACAGATGCATTTTAAGTGTAGATTCA 57.434 30.769 0.00 0.00 0.00 2.57
3306 3842 8.840321 GGATGTATACAGATGCATTTTAAGTGT 58.160 33.333 11.91 1.15 38.38 3.55
3307 3843 8.011673 CGGATGTATACAGATGCATTTTAAGTG 58.988 37.037 11.91 0.00 38.38 3.16
3308 3844 7.715249 ACGGATGTATACAGATGCATTTTAAGT 59.285 33.333 11.91 0.00 38.38 2.24
3309 3845 8.087982 ACGGATGTATACAGATGCATTTTAAG 57.912 34.615 11.91 0.00 38.38 1.85
3310 3846 9.719355 ATACGGATGTATACAGATGCATTTTAA 57.281 29.630 11.91 0.00 38.38 1.52
3311 3847 9.150348 CATACGGATGTATACAGATGCATTTTA 57.850 33.333 11.91 0.00 38.38 1.52
3312 3848 7.661437 ACATACGGATGTATACAGATGCATTTT 59.339 33.333 12.79 0.00 44.77 1.82
3313 3849 7.118245 CACATACGGATGTATACAGATGCATTT 59.882 37.037 14.23 0.00 44.82 2.32
3314 3850 6.591448 CACATACGGATGTATACAGATGCATT 59.409 38.462 14.23 0.00 44.82 3.56
3315 3851 6.101997 CACATACGGATGTATACAGATGCAT 58.898 40.000 14.23 0.00 44.82 3.96
3316 3852 5.469479 CACATACGGATGTATACAGATGCA 58.531 41.667 14.23 0.00 44.82 3.96
3317 3853 4.864806 CCACATACGGATGTATACAGATGC 59.135 45.833 14.23 0.00 44.82 3.91
3318 3854 6.025749 ACCACATACGGATGTATACAGATG 57.974 41.667 14.23 11.05 44.82 2.90
3319 3855 6.295123 GGAACCACATACGGATGTATACAGAT 60.295 42.308 14.23 0.00 44.82 2.90
3320 3856 5.010314 GGAACCACATACGGATGTATACAGA 59.990 44.000 14.23 0.00 44.82 3.41
3321 3857 5.010719 AGGAACCACATACGGATGTATACAG 59.989 44.000 14.23 0.00 44.82 2.74
3322 3858 4.897076 AGGAACCACATACGGATGTATACA 59.103 41.667 14.23 8.27 44.82 2.29
3323 3859 5.464030 AGGAACCACATACGGATGTATAC 57.536 43.478 14.23 3.67 44.82 1.47
3324 3860 6.208007 CACTAGGAACCACATACGGATGTATA 59.792 42.308 14.23 0.00 44.82 1.47
3325 3861 5.010719 CACTAGGAACCACATACGGATGTAT 59.989 44.000 14.23 1.38 44.82 2.29
3326 3862 4.340097 CACTAGGAACCACATACGGATGTA 59.660 45.833 14.23 0.00 44.82 2.29
3327 3863 5.954223 CCACTAGGAACCACATACGGATGT 61.954 50.000 7.68 7.68 41.74 3.06
3328 3864 3.492656 CCACTAGGAACCACATACGGATG 60.493 52.174 5.94 5.94 36.63 3.51
3329 3865 2.698797 CCACTAGGAACCACATACGGAT 59.301 50.000 0.00 0.00 36.89 4.18
3330 3866 2.104967 CCACTAGGAACCACATACGGA 58.895 52.381 0.00 0.00 36.89 4.69
3331 3867 2.104967 TCCACTAGGAACCACATACGG 58.895 52.381 0.00 0.00 42.23 4.02
3342 3878 6.494952 AGTCTTTGTAGAGATTCCACTAGGA 58.505 40.000 0.00 0.00 43.93 2.94
3343 3879 6.783708 AGTCTTTGTAGAGATTCCACTAGG 57.216 41.667 0.00 0.00 0.00 3.02
3358 3894 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
3359 3895 8.202137 TCCTCCGTTCCTAAATATAAGTCTTTG 58.798 37.037 0.00 0.00 0.00 2.77
3360 3896 8.315220 TCCTCCGTTCCTAAATATAAGTCTTT 57.685 34.615 0.00 0.00 0.00 2.52
3361 3897 7.909485 TCCTCCGTTCCTAAATATAAGTCTT 57.091 36.000 0.00 0.00 0.00 3.01
3362 3898 7.564292 ACTTCCTCCGTTCCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
3363 3899 7.724287 ACTTCCTCCGTTCCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
3364 3900 7.672122 ACTTCCTCCGTTCCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
3365 3901 8.636213 TGTACTTCCTCCGTTCCTAAATATAAG 58.364 37.037 0.00 0.00 0.00 1.73
3366 3902 8.537728 TGTACTTCCTCCGTTCCTAAATATAA 57.462 34.615 0.00 0.00 0.00 0.98
3367 3903 8.537728 TTGTACTTCCTCCGTTCCTAAATATA 57.462 34.615 0.00 0.00 0.00 0.86
3368 3904 7.427989 TTGTACTTCCTCCGTTCCTAAATAT 57.572 36.000 0.00 0.00 0.00 1.28
3369 3905 6.855763 TTGTACTTCCTCCGTTCCTAAATA 57.144 37.500 0.00 0.00 0.00 1.40
3370 3906 5.750352 TTGTACTTCCTCCGTTCCTAAAT 57.250 39.130 0.00 0.00 0.00 1.40
3371 3907 5.549742 TTTGTACTTCCTCCGTTCCTAAA 57.450 39.130 0.00 0.00 0.00 1.85
3372 3908 5.070847 AGTTTTGTACTTCCTCCGTTCCTAA 59.929 40.000 0.00 0.00 31.29 2.69
3373 3909 4.590222 AGTTTTGTACTTCCTCCGTTCCTA 59.410 41.667 0.00 0.00 31.29 2.94
3374 3910 3.390311 AGTTTTGTACTTCCTCCGTTCCT 59.610 43.478 0.00 0.00 31.29 3.36
3375 3911 3.736720 AGTTTTGTACTTCCTCCGTTCC 58.263 45.455 0.00 0.00 31.29 3.62
3376 3912 4.629092 AGAGTTTTGTACTTCCTCCGTTC 58.371 43.478 0.00 0.00 37.17 3.95
3377 3913 4.684484 AGAGTTTTGTACTTCCTCCGTT 57.316 40.909 0.00 0.00 37.17 4.44
3378 3914 4.100498 TCAAGAGTTTTGTACTTCCTCCGT 59.900 41.667 0.00 0.00 37.17 4.69
3379 3915 4.628074 TCAAGAGTTTTGTACTTCCTCCG 58.372 43.478 0.00 0.00 37.17 4.63
3380 3916 8.794335 ATAATCAAGAGTTTTGTACTTCCTCC 57.206 34.615 0.00 0.00 37.17 4.30
3389 3925 9.936329 ACCCCAATATATAATCAAGAGTTTTGT 57.064 29.630 0.00 0.00 0.00 2.83
3392 3928 8.860088 GCAACCCCAATATATAATCAAGAGTTT 58.140 33.333 0.00 0.00 0.00 2.66
3607 4143 2.046314 GCGGGCAGGAGCAAACTA 60.046 61.111 0.00 0.00 44.61 2.24
3647 4183 7.865385 GTCATATAAGAGATGTGGACTGAGTTC 59.135 40.741 0.00 0.00 0.00 3.01
3940 4486 6.202570 GCAATAGTTTTCCATGCAAAAAGACA 59.797 34.615 0.00 0.00 37.00 3.41
3951 4497 6.610075 AAATCTGTGGCAATAGTTTTCCAT 57.390 33.333 0.00 0.00 0.00 3.41
3963 4509 1.702182 TGCCTGAAAAATCTGTGGCA 58.298 45.000 0.00 0.00 46.59 4.92
3969 4515 5.809001 TCTGTGAGTATGCCTGAAAAATCT 58.191 37.500 0.00 0.00 0.00 2.40
3971 4517 5.809001 TCTCTGTGAGTATGCCTGAAAAAT 58.191 37.500 0.00 0.00 0.00 1.82
4143 4713 1.764054 CGAGGGGATGAAGAGGCCT 60.764 63.158 3.86 3.86 0.00 5.19
4201 4771 2.345991 CGACCCACCAATCACGGT 59.654 61.111 0.00 0.00 41.07 4.83
4332 4902 2.177580 CCCGCGCCGACAAATACAT 61.178 57.895 0.00 0.00 0.00 2.29
4374 4944 4.954118 TCCAGGACCCACAGCGGT 62.954 66.667 0.00 0.00 39.49 5.68
4381 4951 4.567597 ACCACCGTCCAGGACCCA 62.568 66.667 14.46 0.00 45.00 4.51
4421 4991 3.231736 ACAGCCACCGAACCTCGT 61.232 61.111 0.00 0.00 38.40 4.18
4451 5022 4.864334 CCGGGACATCCAGCAGCC 62.864 72.222 0.00 0.00 37.91 4.85
4452 5023 4.864334 CCCGGGACATCCAGCAGC 62.864 72.222 18.48 0.00 37.91 5.25
4456 5027 1.995626 ACCTTCCCGGGACATCCAG 60.996 63.158 26.87 17.99 37.91 3.86
4507 5078 3.233980 CCCCCGATGCAGATCCGA 61.234 66.667 0.00 0.00 0.00 4.55
4560 5131 1.024579 CGAATAGCCCACACCACCAC 61.025 60.000 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.