Multiple sequence alignment - TraesCS3D01G228500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G228500 chr3D 100.000 2294 0 0 601 2894 310696414 310698707 0.000000e+00 4237.0
1 TraesCS3D01G228500 chr3D 93.642 346 21 1 833 1178 310707531 310707187 1.540000e-142 516.0
2 TraesCS3D01G228500 chr3D 100.000 270 0 0 1 270 310695814 310696083 1.550000e-137 499.0
3 TraesCS3D01G228500 chr3D 87.052 363 32 9 1224 1576 607500527 607500170 2.090000e-106 396.0
4 TraesCS3D01G228500 chr3D 82.407 216 21 9 1774 1989 607499894 607499696 3.830000e-39 172.0
5 TraesCS3D01G228500 chr3D 96.907 97 3 0 2798 2894 310697131 310697035 2.310000e-36 163.0
6 TraesCS3D01G228500 chr3D 95.789 95 4 0 2798 2892 607500433 607500527 1.390000e-33 154.0
7 TraesCS3D01G228500 chr3D 93.023 86 5 1 2288 2372 426951440 426951355 1.090000e-24 124.0
8 TraesCS3D01G228500 chr6A 95.401 1957 86 4 833 2786 108186220 108184265 0.000000e+00 3112.0
9 TraesCS3D01G228500 chr6A 93.079 708 42 6 2082 2786 575588241 575588944 0.000000e+00 1029.0
10 TraesCS3D01G228500 chr6A 93.891 311 18 1 1117 1426 108183934 108184244 4.370000e-128 468.0
11 TraesCS3D01G228500 chr6A 95.876 97 4 0 2798 2894 108185736 108185832 1.070000e-34 158.0
12 TraesCS3D01G228500 chr6A 79.545 132 20 6 2660 2786 398166126 398166255 1.430000e-13 87.9
13 TraesCS3D01G228500 chr7A 95.084 712 28 4 2082 2786 19469752 19470463 0.000000e+00 1114.0
14 TraesCS3D01G228500 chr7A 93.134 670 39 5 830 1493 33147509 33148177 0.000000e+00 976.0
15 TraesCS3D01G228500 chr7A 91.447 608 31 6 833 1440 33149710 33149124 0.000000e+00 815.0
16 TraesCS3D01G228500 chr7A 85.237 718 45 23 2082 2786 108836203 108835534 0.000000e+00 682.0
17 TraesCS3D01G228500 chr7A 95.876 97 4 0 2798 2894 33148002 33147906 1.070000e-34 158.0
18 TraesCS3D01G228500 chr7A 95.876 97 4 0 2798 2894 33149246 33149342 1.070000e-34 158.0
19 TraesCS3D01G228500 chr7A 89.320 103 7 3 626 725 252192164 252192265 3.030000e-25 126.0
20 TraesCS3D01G228500 chr7A 79.310 174 24 9 626 796 121389953 121390117 8.480000e-21 111.0
21 TraesCS3D01G228500 chr7A 97.500 40 1 0 2043 2082 33149107 33149146 5.170000e-08 69.4
22 TraesCS3D01G228500 chr2A 93.464 612 35 4 831 1440 703561134 703560526 0.000000e+00 904.0
23 TraesCS3D01G228500 chr2A 97.826 92 2 0 2798 2889 703560647 703560738 2.980000e-35 159.0
24 TraesCS3D01G228500 chr2A 100.000 40 0 0 2043 2082 703560509 703560548 1.110000e-09 75.0
25 TraesCS3D01G228500 chr2A 100.000 39 0 0 1455 1493 703559644 703559682 4.000000e-09 73.1
26 TraesCS3D01G228500 chr6B 93.599 578 36 1 831 1408 563804367 563804943 0.000000e+00 861.0
27 TraesCS3D01G228500 chr6B 93.426 578 37 1 831 1408 563813668 563814244 0.000000e+00 856.0
28 TraesCS3D01G228500 chr6B 93.486 568 35 1 833 1400 563806537 563805972 0.000000e+00 843.0
29 TraesCS3D01G228500 chr6B 90.633 395 33 2 833 1224 535372210 535371817 3.300000e-144 521.0
30 TraesCS3D01G228500 chr6B 97.917 96 2 0 2798 2893 563806054 563806149 1.780000e-37 167.0
31 TraesCS3D01G228500 chr6B 94.845 97 5 0 2798 2894 563814155 563814059 4.990000e-33 152.0
32 TraesCS3D01G228500 chr6B 90.566 106 8 2 601 705 508624706 508624602 3.890000e-29 139.0
33 TraesCS3D01G228500 chr6B 93.103 58 4 0 737 794 486167459 486167402 5.140000e-13 86.1
34 TraesCS3D01G228500 chr4A 88.826 707 56 12 2082 2786 625030894 625031579 0.000000e+00 846.0
35 TraesCS3D01G228500 chr4A 78.505 214 24 12 601 794 590611263 590611052 1.410000e-23 121.0
36 TraesCS3D01G228500 chr7D 94.477 507 26 2 2282 2786 343298950 343299456 0.000000e+00 780.0
37 TraesCS3D01G228500 chr7D 91.827 208 16 1 2082 2289 343286078 343286284 3.650000e-74 289.0
38 TraesCS3D01G228500 chr7D 81.221 213 21 8 601 794 159864256 159864468 1.390000e-33 154.0
39 TraesCS3D01G228500 chr7D 98.113 53 1 0 742 794 521730197 521730249 3.070000e-15 93.5
40 TraesCS3D01G228500 chr7D 91.935 62 5 0 733 794 118821223 118821162 1.430000e-13 87.9
41 TraesCS3D01G228500 chr3A 90.092 545 50 3 2082 2626 706869422 706868882 0.000000e+00 704.0
42 TraesCS3D01G228500 chr3A 94.488 127 4 2 1774 1898 740020272 740020147 2.940000e-45 193.0
43 TraesCS3D01G228500 chr3A 95.789 95 4 0 2798 2892 740020655 740020749 1.390000e-33 154.0
44 TraesCS3D01G228500 chr3A 80.645 217 22 5 601 798 511080154 511080369 1.800000e-32 150.0
45 TraesCS3D01G228500 chr3A 100.000 39 0 0 794 832 421677346 421677308 4.000000e-09 73.1
46 TraesCS3D01G228500 chr6D 92.830 265 18 1 3 267 382592234 382592497 1.630000e-102 383.0
47 TraesCS3D01G228500 chr6D 94.378 249 12 2 1 248 86597586 86597833 5.850000e-102 381.0
48 TraesCS3D01G228500 chr6D 84.298 121 16 3 608 725 23766961 23767081 6.550000e-22 115.0
49 TraesCS3D01G228500 chr6D 93.750 64 4 0 733 796 452308616 452308679 2.370000e-16 97.1
50 TraesCS3D01G228500 chr6D 77.397 146 17 13 2655 2786 433560864 433561007 4.000000e-09 73.1
51 TraesCS3D01G228500 chr5D 94.378 249 14 0 1 249 452359895 452359647 1.630000e-102 383.0
52 TraesCS3D01G228500 chr5D 92.771 249 18 0 1 249 292818530 292818778 7.620000e-96 361.0
53 TraesCS3D01G228500 chr5D 85.833 120 14 2 601 719 480842604 480842487 1.090000e-24 124.0
54 TraesCS3D01G228500 chr5D 78.626 131 21 6 2661 2786 513508843 513508715 2.390000e-11 80.5
55 TraesCS3D01G228500 chr2B 92.164 268 20 1 1 267 423338829 423338562 7.570000e-101 377.0
56 TraesCS3D01G228500 chr2B 79.330 358 48 16 2082 2432 204868675 204869013 8.070000e-56 228.0
57 TraesCS3D01G228500 chr2B 89.076 119 12 1 601 718 607958313 607958431 2.320000e-31 147.0
58 TraesCS3D01G228500 chr2B 87.805 123 13 2 605 725 209080263 209080141 3.010000e-30 143.0
59 TraesCS3D01G228500 chr3B 93.574 249 16 0 1 249 244657975 244658223 3.520000e-99 372.0
60 TraesCS3D01G228500 chr3B 89.916 119 9 3 601 718 111836036 111836152 1.800000e-32 150.0
61 TraesCS3D01G228500 chr3B 88.060 67 8 0 730 796 655091473 655091407 2.390000e-11 80.5
62 TraesCS3D01G228500 chr5A 91.635 263 22 0 5 267 707525930 707525668 5.890000e-97 364.0
63 TraesCS3D01G228500 chr5A 90.637 267 25 0 1 267 382301733 382301467 3.550000e-94 355.0
64 TraesCS3D01G228500 chr2D 92.800 250 17 1 1 249 386701918 386702167 7.620000e-96 361.0
65 TraesCS3D01G228500 chr2D 90.141 71 5 2 657 725 506649974 506650044 1.100000e-14 91.6
66 TraesCS3D01G228500 chr7B 91.304 253 22 0 833 1085 96800528 96800780 2.130000e-91 346.0
67 TraesCS3D01G228500 chr7B 89.011 91 6 4 638 725 672912131 672912042 3.050000e-20 110.0
68 TraesCS3D01G228500 chr5B 82.673 202 26 6 601 794 597082691 597082891 1.380000e-38 171.0
69 TraesCS3D01G228500 chr1D 89.167 120 10 3 601 718 98136354 98136472 2.320000e-31 147.0
70 TraesCS3D01G228500 chr1B 78.431 204 23 11 611 796 659690199 659689999 2.360000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G228500 chr3D 310695814 310698707 2893 False 2368.000000 4237 100.000000 1 2894 2 chr3D.!!$F2 2893
1 TraesCS3D01G228500 chr3D 607499696 607500527 831 True 284.000000 396 84.729500 1224 1989 2 chr3D.!!$R4 765
2 TraesCS3D01G228500 chr6A 108184265 108186220 1955 True 3112.000000 3112 95.401000 833 2786 1 chr6A.!!$R1 1953
3 TraesCS3D01G228500 chr6A 575588241 575588944 703 False 1029.000000 1029 93.079000 2082 2786 1 chr6A.!!$F2 704
4 TraesCS3D01G228500 chr6A 108183934 108185832 1898 False 313.000000 468 94.883500 1117 2894 2 chr6A.!!$F3 1777
5 TraesCS3D01G228500 chr7A 19469752 19470463 711 False 1114.000000 1114 95.084000 2082 2786 1 chr7A.!!$F1 704
6 TraesCS3D01G228500 chr7A 108835534 108836203 669 True 682.000000 682 85.237000 2082 2786 1 chr7A.!!$R1 704
7 TraesCS3D01G228500 chr7A 33147906 33149710 1804 True 486.500000 815 93.661500 833 2894 2 chr7A.!!$R2 2061
8 TraesCS3D01G228500 chr7A 33147509 33149342 1833 False 401.133333 976 95.503333 830 2894 3 chr7A.!!$F4 2064
9 TraesCS3D01G228500 chr2A 703560526 703561134 608 True 904.000000 904 93.464000 831 1440 1 chr2A.!!$R1 609
10 TraesCS3D01G228500 chr6B 563813668 563814244 576 False 856.000000 856 93.426000 831 1408 1 chr6B.!!$F1 577
11 TraesCS3D01G228500 chr6B 563805972 563806537 565 True 843.000000 843 93.486000 833 1400 1 chr6B.!!$R4 567
12 TraesCS3D01G228500 chr6B 563804367 563806149 1782 False 514.000000 861 95.758000 831 2893 2 chr6B.!!$F2 2062
13 TraesCS3D01G228500 chr4A 625030894 625031579 685 False 846.000000 846 88.826000 2082 2786 1 chr4A.!!$F1 704
14 TraesCS3D01G228500 chr7D 343298950 343299456 506 False 780.000000 780 94.477000 2282 2786 1 chr7D.!!$F3 504
15 TraesCS3D01G228500 chr3A 706868882 706869422 540 True 704.000000 704 90.092000 2082 2626 1 chr3A.!!$R2 544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
45 46 0.039074 GCCATACTCCTCATCCGACG 60.039 60.0 0.0 0.0 0.0 5.12 F
789 790 0.107654 GAGGGGTCCGGTTGAAGATG 60.108 60.0 0.0 0.0 0.0 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1348 1359 0.321996 GTTCAGAAGGAAGCGGAGGT 59.678 55.000 0.0 0.0 44.6 3.85 R
2538 4858 1.135373 GCAGTGAGTAGCAGCGTAGAA 60.135 52.381 0.0 0.0 0.0 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.749076 TGAATCATTTGGTCAAGCTCCG 59.251 45.455 0.00 0.00 0.00 4.63
22 23 2.496899 ATCATTTGGTCAAGCTCCGT 57.503 45.000 0.00 0.00 0.00 4.69
23 24 1.808411 TCATTTGGTCAAGCTCCGTC 58.192 50.000 0.00 0.00 0.00 4.79
24 25 0.443869 CATTTGGTCAAGCTCCGTCG 59.556 55.000 0.00 0.00 0.00 5.12
25 26 0.673644 ATTTGGTCAAGCTCCGTCGG 60.674 55.000 4.39 4.39 0.00 4.79
26 27 2.725203 TTTGGTCAAGCTCCGTCGGG 62.725 60.000 12.29 3.27 0.00 5.14
30 31 4.473520 CAAGCTCCGTCGGGCCAT 62.474 66.667 12.29 3.39 0.00 4.40
31 32 2.762459 AAGCTCCGTCGGGCCATA 60.762 61.111 12.29 0.00 0.00 2.74
32 33 3.090219 AAGCTCCGTCGGGCCATAC 62.090 63.158 12.29 0.00 0.00 2.39
33 34 3.537874 GCTCCGTCGGGCCATACT 61.538 66.667 12.29 0.00 0.00 2.12
34 35 2.728817 CTCCGTCGGGCCATACTC 59.271 66.667 12.29 0.00 0.00 2.59
35 36 2.836360 TCCGTCGGGCCATACTCC 60.836 66.667 12.29 0.00 0.00 3.85
36 37 2.838225 CCGTCGGGCCATACTCCT 60.838 66.667 4.39 0.00 0.00 3.69
37 38 2.728817 CGTCGGGCCATACTCCTC 59.271 66.667 4.39 0.00 0.00 3.71
38 39 2.125326 CGTCGGGCCATACTCCTCA 61.125 63.158 4.39 0.00 0.00 3.86
39 40 1.464376 CGTCGGGCCATACTCCTCAT 61.464 60.000 4.39 0.00 0.00 2.90
40 41 0.318762 GTCGGGCCATACTCCTCATC 59.681 60.000 4.39 0.00 0.00 2.92
41 42 0.832135 TCGGGCCATACTCCTCATCC 60.832 60.000 4.39 0.00 0.00 3.51
42 43 1.674057 GGGCCATACTCCTCATCCG 59.326 63.158 4.39 0.00 0.00 4.18
43 44 0.832135 GGGCCATACTCCTCATCCGA 60.832 60.000 4.39 0.00 0.00 4.55
44 45 0.318762 GGCCATACTCCTCATCCGAC 59.681 60.000 0.00 0.00 0.00 4.79
45 46 0.039074 GCCATACTCCTCATCCGACG 60.039 60.000 0.00 0.00 0.00 5.12
46 47 1.605753 CCATACTCCTCATCCGACGA 58.394 55.000 0.00 0.00 0.00 4.20
47 48 1.954382 CCATACTCCTCATCCGACGAA 59.046 52.381 0.00 0.00 0.00 3.85
48 49 2.030717 CCATACTCCTCATCCGACGAAG 60.031 54.545 0.00 0.00 0.00 3.79
49 50 1.022735 TACTCCTCATCCGACGAAGC 58.977 55.000 0.00 0.00 0.00 3.86
50 51 0.965866 ACTCCTCATCCGACGAAGCA 60.966 55.000 0.00 0.00 0.00 3.91
51 52 0.387202 CTCCTCATCCGACGAAGCAT 59.613 55.000 0.00 0.00 0.00 3.79
52 53 0.385751 TCCTCATCCGACGAAGCATC 59.614 55.000 0.00 0.00 0.00 3.91
72 73 3.720949 CGGAATCCGTCATGTACCTAA 57.279 47.619 14.46 0.00 42.73 2.69
73 74 3.378339 CGGAATCCGTCATGTACCTAAC 58.622 50.000 14.46 0.00 42.73 2.34
74 75 3.181484 CGGAATCCGTCATGTACCTAACA 60.181 47.826 14.46 0.00 42.73 2.41
75 76 4.678574 CGGAATCCGTCATGTACCTAACAA 60.679 45.833 14.46 0.00 41.19 2.83
76 77 5.180271 GGAATCCGTCATGTACCTAACAAA 58.820 41.667 0.00 0.00 42.70 2.83
77 78 5.644636 GGAATCCGTCATGTACCTAACAAAA 59.355 40.000 0.00 0.00 42.70 2.44
78 79 6.317893 GGAATCCGTCATGTACCTAACAAAAT 59.682 38.462 0.00 0.00 42.70 1.82
79 80 6.920569 ATCCGTCATGTACCTAACAAAATC 57.079 37.500 0.00 0.00 42.70 2.17
80 81 5.795972 TCCGTCATGTACCTAACAAAATCA 58.204 37.500 0.00 0.00 42.70 2.57
81 82 5.640357 TCCGTCATGTACCTAACAAAATCAC 59.360 40.000 0.00 0.00 42.70 3.06
82 83 5.410132 CCGTCATGTACCTAACAAAATCACA 59.590 40.000 0.00 0.00 42.70 3.58
83 84 6.072948 CCGTCATGTACCTAACAAAATCACAA 60.073 38.462 0.00 0.00 42.70 3.33
84 85 7.361713 CCGTCATGTACCTAACAAAATCACAAT 60.362 37.037 0.00 0.00 42.70 2.71
85 86 8.661257 CGTCATGTACCTAACAAAATCACAATA 58.339 33.333 0.00 0.00 42.70 1.90
91 92 9.498307 GTACCTAACAAAATCACAATAATTCCG 57.502 33.333 0.00 0.00 0.00 4.30
92 93 7.543756 ACCTAACAAAATCACAATAATTCCGG 58.456 34.615 0.00 0.00 0.00 5.14
93 94 7.177744 ACCTAACAAAATCACAATAATTCCGGT 59.822 33.333 0.00 0.00 0.00 5.28
94 95 7.700656 CCTAACAAAATCACAATAATTCCGGTC 59.299 37.037 0.00 0.00 0.00 4.79
95 96 5.636837 ACAAAATCACAATAATTCCGGTCG 58.363 37.500 0.00 0.00 0.00 4.79
96 97 4.893424 AAATCACAATAATTCCGGTCGG 57.107 40.909 0.00 2.52 0.00 4.79
97 98 3.553828 ATCACAATAATTCCGGTCGGT 57.446 42.857 9.36 0.00 36.47 4.69
98 99 2.896168 TCACAATAATTCCGGTCGGTC 58.104 47.619 9.36 0.00 36.47 4.79
99 100 2.234168 TCACAATAATTCCGGTCGGTCA 59.766 45.455 9.36 0.00 36.47 4.02
100 101 3.004171 CACAATAATTCCGGTCGGTCAA 58.996 45.455 9.36 0.00 36.47 3.18
101 102 3.625764 CACAATAATTCCGGTCGGTCAAT 59.374 43.478 9.36 0.20 36.47 2.57
102 103 3.625764 ACAATAATTCCGGTCGGTCAATG 59.374 43.478 9.36 5.49 36.47 2.82
103 104 3.553828 ATAATTCCGGTCGGTCAATGT 57.446 42.857 9.36 0.00 36.47 2.71
104 105 1.448985 AATTCCGGTCGGTCAATGTG 58.551 50.000 9.36 0.00 36.47 3.21
105 106 0.323629 ATTCCGGTCGGTCAATGTGT 59.676 50.000 9.36 0.00 36.47 3.72
106 107 0.320073 TTCCGGTCGGTCAATGTGTC 60.320 55.000 9.36 0.00 36.47 3.67
107 108 2.092291 CCGGTCGGTCAATGTGTCG 61.092 63.158 0.55 0.00 0.00 4.35
108 109 1.081041 CGGTCGGTCAATGTGTCGA 60.081 57.895 0.00 0.00 0.00 4.20
109 110 0.665068 CGGTCGGTCAATGTGTCGAA 60.665 55.000 0.00 0.00 33.33 3.71
110 111 0.788391 GGTCGGTCAATGTGTCGAAC 59.212 55.000 0.00 0.00 33.33 3.95
111 112 1.493772 GTCGGTCAATGTGTCGAACA 58.506 50.000 0.00 0.00 44.79 3.18
122 123 1.946745 TGTCGAACACATCAAGCACA 58.053 45.000 0.00 0.00 0.00 4.57
123 124 2.284190 TGTCGAACACATCAAGCACAA 58.716 42.857 0.00 0.00 0.00 3.33
124 125 2.287644 TGTCGAACACATCAAGCACAAG 59.712 45.455 0.00 0.00 0.00 3.16
125 126 1.872952 TCGAACACATCAAGCACAAGG 59.127 47.619 0.00 0.00 0.00 3.61
126 127 1.664016 CGAACACATCAAGCACAAGGC 60.664 52.381 0.00 0.00 45.30 4.35
143 144 2.897350 CGGAGCCGGAGAATTGCC 60.897 66.667 5.05 0.00 35.56 4.52
152 153 1.004595 GGAGAATTGCCGAACGTACC 58.995 55.000 0.00 0.00 0.00 3.34
153 154 1.673626 GGAGAATTGCCGAACGTACCA 60.674 52.381 0.00 0.00 0.00 3.25
154 155 1.392510 GAGAATTGCCGAACGTACCAC 59.607 52.381 0.00 0.00 0.00 4.16
158 159 3.107661 GCCGAACGTACCACGGTG 61.108 66.667 18.93 0.00 44.27 4.94
159 160 2.431260 CCGAACGTACCACGGTGG 60.431 66.667 25.21 25.21 44.27 4.61
160 161 3.107661 CGAACGTACCACGGTGGC 61.108 66.667 26.62 10.72 44.27 5.01
161 162 3.107661 GAACGTACCACGGTGGCG 61.108 66.667 26.62 23.30 44.27 5.69
162 163 3.846602 GAACGTACCACGGTGGCGT 62.847 63.158 26.62 23.94 44.27 5.68
163 164 3.846602 AACGTACCACGGTGGCGTC 62.847 63.158 25.74 16.42 41.66 5.19
208 209 3.453679 GAGGACGGGAGCGCTCTT 61.454 66.667 34.46 20.28 0.00 2.85
209 210 3.418744 GAGGACGGGAGCGCTCTTC 62.419 68.421 34.46 26.00 0.00 2.87
210 211 4.516195 GGACGGGAGCGCTCTTCC 62.516 72.222 34.46 29.87 34.39 3.46
214 215 4.214327 GGGAGCGCTCTTCCGGAG 62.214 72.222 34.46 0.00 44.49 4.63
215 216 3.453679 GGAGCGCTCTTCCGGAGT 61.454 66.667 34.46 0.00 43.62 3.85
216 217 2.574399 GAGCGCTCTTCCGGAGTT 59.426 61.111 29.88 0.00 43.62 3.01
217 218 1.807573 GAGCGCTCTTCCGGAGTTG 60.808 63.158 29.88 0.00 43.62 3.16
218 219 2.815647 GCGCTCTTCCGGAGTTGG 60.816 66.667 3.34 0.00 43.62 3.77
219 220 2.815647 CGCTCTTCCGGAGTTGGC 60.816 66.667 3.34 7.45 43.62 4.52
220 221 2.815647 GCTCTTCCGGAGTTGGCG 60.816 66.667 3.34 0.00 43.62 5.69
221 222 2.125512 CTCTTCCGGAGTTGGCGG 60.126 66.667 3.34 0.00 37.30 6.13
222 223 4.388499 TCTTCCGGAGTTGGCGGC 62.388 66.667 3.34 0.00 0.00 6.53
228 229 4.821589 GGAGTTGGCGGCGGAGAG 62.822 72.222 9.78 0.00 0.00 3.20
238 239 2.815647 GCGGAGAGCCTGGAAACG 60.816 66.667 0.00 0.00 40.81 3.60
239 240 2.970639 CGGAGAGCCTGGAAACGA 59.029 61.111 0.00 0.00 0.00 3.85
240 241 1.446272 CGGAGAGCCTGGAAACGAC 60.446 63.158 0.00 0.00 0.00 4.34
241 242 1.878656 CGGAGAGCCTGGAAACGACT 61.879 60.000 0.00 0.00 0.00 4.18
242 243 0.390472 GGAGAGCCTGGAAACGACTG 60.390 60.000 0.00 0.00 0.00 3.51
243 244 1.004440 AGAGCCTGGAAACGACTGC 60.004 57.895 0.00 0.00 0.00 4.40
244 245 2.357517 AGCCTGGAAACGACTGCG 60.358 61.111 0.00 0.00 44.79 5.18
245 246 3.423154 GCCTGGAAACGACTGCGG 61.423 66.667 0.00 0.00 43.17 5.69
246 247 2.342279 CCTGGAAACGACTGCGGA 59.658 61.111 0.00 0.00 43.17 5.54
247 248 1.738099 CCTGGAAACGACTGCGGAG 60.738 63.158 0.85 0.85 43.17 4.63
617 618 3.387716 GCAATTTGGGGTGGGGTC 58.612 61.111 0.00 0.00 0.00 4.46
618 619 2.645192 GCAATTTGGGGTGGGGTCG 61.645 63.158 0.00 0.00 0.00 4.79
619 620 1.981853 CAATTTGGGGTGGGGTCGG 60.982 63.158 0.00 0.00 0.00 4.79
620 621 3.232497 AATTTGGGGTGGGGTCGGG 62.232 63.158 0.00 0.00 0.00 5.14
625 626 4.340246 GGGTGGGGTCGGGTTGTC 62.340 72.222 0.00 0.00 0.00 3.18
626 627 4.692475 GGTGGGGTCGGGTTGTCG 62.692 72.222 0.00 0.00 0.00 4.35
627 628 4.692475 GTGGGGTCGGGTTGTCGG 62.692 72.222 0.00 0.00 0.00 4.79
630 631 4.383861 GGGTCGGGTTGTCGGGTC 62.384 72.222 0.00 0.00 0.00 4.46
631 632 4.383861 GGTCGGGTTGTCGGGTCC 62.384 72.222 0.00 0.00 0.00 4.46
632 633 3.618750 GTCGGGTTGTCGGGTCCA 61.619 66.667 0.00 0.00 0.00 4.02
633 634 2.843411 TCGGGTTGTCGGGTCCAA 60.843 61.111 0.00 0.00 0.00 3.53
634 635 2.667199 CGGGTTGTCGGGTCCAAC 60.667 66.667 0.00 0.00 41.11 3.77
635 636 2.667199 GGGTTGTCGGGTCCAACG 60.667 66.667 0.00 0.00 42.42 4.10
636 637 2.109593 GGTTGTCGGGTCCAACGT 59.890 61.111 0.00 0.00 42.42 3.99
637 638 2.248835 GGTTGTCGGGTCCAACGTG 61.249 63.158 0.00 0.00 42.42 4.49
638 639 2.109387 TTGTCGGGTCCAACGTGG 59.891 61.111 0.00 0.00 39.43 4.94
639 640 4.612412 TGTCGGGTCCAACGTGGC 62.612 66.667 0.00 0.00 37.47 5.01
645 646 4.309950 GTCCAACGTGGCGGGAGT 62.310 66.667 0.00 0.00 37.47 3.85
646 647 4.308458 TCCAACGTGGCGGGAGTG 62.308 66.667 0.00 0.00 37.47 3.51
668 669 4.660938 GGCACCCCCATATCCGCC 62.661 72.222 0.00 0.00 0.00 6.13
669 670 4.660938 GCACCCCCATATCCGCCC 62.661 72.222 0.00 0.00 0.00 6.13
670 671 3.966543 CACCCCCATATCCGCCCC 61.967 72.222 0.00 0.00 0.00 5.80
671 672 4.525028 ACCCCCATATCCGCCCCA 62.525 66.667 0.00 0.00 0.00 4.96
672 673 2.941025 CCCCCATATCCGCCCCAT 60.941 66.667 0.00 0.00 0.00 4.00
673 674 1.618143 CCCCCATATCCGCCCCATA 60.618 63.158 0.00 0.00 0.00 2.74
674 675 0.993509 CCCCCATATCCGCCCCATAT 60.994 60.000 0.00 0.00 0.00 1.78
675 676 0.926293 CCCCATATCCGCCCCATATT 59.074 55.000 0.00 0.00 0.00 1.28
676 677 1.287739 CCCCATATCCGCCCCATATTT 59.712 52.381 0.00 0.00 0.00 1.40
677 678 2.378038 CCCATATCCGCCCCATATTTG 58.622 52.381 0.00 0.00 0.00 2.32
678 679 2.291540 CCCATATCCGCCCCATATTTGT 60.292 50.000 0.00 0.00 0.00 2.83
679 680 2.754552 CCATATCCGCCCCATATTTGTG 59.245 50.000 0.00 0.00 0.00 3.33
680 681 1.904287 TATCCGCCCCATATTTGTGC 58.096 50.000 0.00 0.00 0.00 4.57
681 682 0.185901 ATCCGCCCCATATTTGTGCT 59.814 50.000 0.00 0.00 0.00 4.40
682 683 0.751277 TCCGCCCCATATTTGTGCTG 60.751 55.000 0.00 0.00 0.00 4.41
683 684 1.735360 CGCCCCATATTTGTGCTGG 59.265 57.895 0.00 0.00 0.00 4.85
684 685 0.751277 CGCCCCATATTTGTGCTGGA 60.751 55.000 0.00 0.00 31.38 3.86
685 686 1.708341 GCCCCATATTTGTGCTGGAT 58.292 50.000 0.00 0.00 31.38 3.41
686 687 2.813726 CGCCCCATATTTGTGCTGGATA 60.814 50.000 0.00 0.00 31.38 2.59
687 688 3.434309 GCCCCATATTTGTGCTGGATAT 58.566 45.455 0.00 0.00 31.38 1.63
688 689 3.194116 GCCCCATATTTGTGCTGGATATG 59.806 47.826 0.00 0.00 34.86 1.78
689 690 4.665451 CCCCATATTTGTGCTGGATATGA 58.335 43.478 4.60 0.00 36.37 2.15
690 691 4.703575 CCCCATATTTGTGCTGGATATGAG 59.296 45.833 4.60 0.00 36.37 2.90
691 692 4.703575 CCCATATTTGTGCTGGATATGAGG 59.296 45.833 4.60 1.77 36.37 3.86
692 693 4.703575 CCATATTTGTGCTGGATATGAGGG 59.296 45.833 4.60 0.00 36.37 4.30
693 694 3.959495 ATTTGTGCTGGATATGAGGGT 57.041 42.857 0.00 0.00 0.00 4.34
694 695 2.715749 TTGTGCTGGATATGAGGGTG 57.284 50.000 0.00 0.00 0.00 4.61
695 696 0.181114 TGTGCTGGATATGAGGGTGC 59.819 55.000 0.00 0.00 0.00 5.01
696 697 0.471617 GTGCTGGATATGAGGGTGCT 59.528 55.000 0.00 0.00 0.00 4.40
697 698 0.471191 TGCTGGATATGAGGGTGCTG 59.529 55.000 0.00 0.00 0.00 4.41
698 699 0.250640 GCTGGATATGAGGGTGCTGG 60.251 60.000 0.00 0.00 0.00 4.85
699 700 1.135094 CTGGATATGAGGGTGCTGGT 58.865 55.000 0.00 0.00 0.00 4.00
700 701 1.071385 CTGGATATGAGGGTGCTGGTC 59.929 57.143 0.00 0.00 0.00 4.02
701 702 1.131638 GGATATGAGGGTGCTGGTCA 58.868 55.000 0.00 0.00 0.00 4.02
702 703 1.071385 GGATATGAGGGTGCTGGTCAG 59.929 57.143 0.00 0.00 0.00 3.51
717 718 1.371183 TCAGCCCTGACGTTTGAGG 59.629 57.895 0.00 0.00 34.14 3.86
720 721 4.379174 CCCTGACGTTTGAGGGTG 57.621 61.111 16.52 0.00 43.75 4.61
721 722 1.450211 CCCTGACGTTTGAGGGTGT 59.550 57.895 16.52 0.00 43.75 4.16
722 723 0.179029 CCCTGACGTTTGAGGGTGTT 60.179 55.000 16.52 0.00 43.75 3.32
723 724 1.675552 CCTGACGTTTGAGGGTGTTT 58.324 50.000 0.00 0.00 0.00 2.83
724 725 1.333619 CCTGACGTTTGAGGGTGTTTG 59.666 52.381 0.00 0.00 0.00 2.93
725 726 2.014128 CTGACGTTTGAGGGTGTTTGT 58.986 47.619 0.00 0.00 0.00 2.83
726 727 1.740585 TGACGTTTGAGGGTGTTTGTG 59.259 47.619 0.00 0.00 0.00 3.33
727 728 2.011222 GACGTTTGAGGGTGTTTGTGA 58.989 47.619 0.00 0.00 0.00 3.58
728 729 2.420722 GACGTTTGAGGGTGTTTGTGAA 59.579 45.455 0.00 0.00 0.00 3.18
729 730 2.820787 ACGTTTGAGGGTGTTTGTGAAA 59.179 40.909 0.00 0.00 0.00 2.69
730 731 3.445805 ACGTTTGAGGGTGTTTGTGAAAT 59.554 39.130 0.00 0.00 0.00 2.17
731 732 4.041723 CGTTTGAGGGTGTTTGTGAAATC 58.958 43.478 0.00 0.00 0.00 2.17
732 733 3.980646 TTGAGGGTGTTTGTGAAATCG 57.019 42.857 0.00 0.00 0.00 3.34
733 734 2.925724 TGAGGGTGTTTGTGAAATCGT 58.074 42.857 0.00 0.00 0.00 3.73
734 735 2.616376 TGAGGGTGTTTGTGAAATCGTG 59.384 45.455 0.00 0.00 0.00 4.35
735 736 2.875933 GAGGGTGTTTGTGAAATCGTGA 59.124 45.455 0.00 0.00 0.00 4.35
736 737 2.616842 AGGGTGTTTGTGAAATCGTGAC 59.383 45.455 0.00 0.00 0.00 3.67
737 738 2.616842 GGGTGTTTGTGAAATCGTGACT 59.383 45.455 0.00 0.00 0.00 3.41
738 739 3.548014 GGGTGTTTGTGAAATCGTGACTG 60.548 47.826 0.00 0.00 0.00 3.51
739 740 3.548014 GGTGTTTGTGAAATCGTGACTGG 60.548 47.826 0.00 0.00 0.00 4.00
740 741 3.311322 GTGTTTGTGAAATCGTGACTGGA 59.689 43.478 0.00 0.00 0.00 3.86
741 742 3.311322 TGTTTGTGAAATCGTGACTGGAC 59.689 43.478 0.00 0.00 0.00 4.02
742 743 1.778334 TGTGAAATCGTGACTGGACG 58.222 50.000 0.00 0.00 40.83 4.79
743 744 1.068474 GTGAAATCGTGACTGGACGG 58.932 55.000 0.00 0.00 39.88 4.79
744 745 0.669318 TGAAATCGTGACTGGACGGC 60.669 55.000 0.00 0.00 39.88 5.68
745 746 1.359459 GAAATCGTGACTGGACGGCC 61.359 60.000 0.00 0.00 39.88 6.13
746 747 1.827399 AAATCGTGACTGGACGGCCT 61.827 55.000 9.82 0.00 39.88 5.19
747 748 2.507110 AATCGTGACTGGACGGCCTG 62.507 60.000 13.50 13.50 39.88 4.85
759 760 3.451894 GGCCTGCCCGGACATTTG 61.452 66.667 0.73 0.00 42.15 2.32
760 761 2.361104 GCCTGCCCGGACATTTGA 60.361 61.111 0.73 0.00 33.16 2.69
761 762 2.409870 GCCTGCCCGGACATTTGAG 61.410 63.158 0.73 0.00 33.16 3.02
762 763 1.299648 CCTGCCCGGACATTTGAGA 59.700 57.895 0.73 0.00 33.16 3.27
763 764 1.026718 CCTGCCCGGACATTTGAGAC 61.027 60.000 0.73 0.00 33.16 3.36
764 765 1.361668 CTGCCCGGACATTTGAGACG 61.362 60.000 0.73 0.00 0.00 4.18
765 766 2.106683 GCCCGGACATTTGAGACGG 61.107 63.158 0.73 0.00 43.89 4.79
766 767 4.201951 CCGGACATTTGAGACGGG 57.798 61.111 0.00 0.00 40.79 5.28
767 768 1.295423 CCGGACATTTGAGACGGGT 59.705 57.895 0.00 0.00 40.79 5.28
768 769 0.321298 CCGGACATTTGAGACGGGTT 60.321 55.000 0.00 0.00 40.79 4.11
769 770 1.519408 CGGACATTTGAGACGGGTTT 58.481 50.000 0.00 0.00 0.00 3.27
770 771 1.196808 CGGACATTTGAGACGGGTTTG 59.803 52.381 0.00 0.00 0.00 2.93
771 772 2.500229 GGACATTTGAGACGGGTTTGA 58.500 47.619 0.00 0.00 0.00 2.69
772 773 2.484264 GGACATTTGAGACGGGTTTGAG 59.516 50.000 0.00 0.00 0.00 3.02
773 774 2.484264 GACATTTGAGACGGGTTTGAGG 59.516 50.000 0.00 0.00 0.00 3.86
774 775 1.812571 CATTTGAGACGGGTTTGAGGG 59.187 52.381 0.00 0.00 0.00 4.30
775 776 0.109723 TTTGAGACGGGTTTGAGGGG 59.890 55.000 0.00 0.00 0.00 4.79
776 777 1.057851 TTGAGACGGGTTTGAGGGGT 61.058 55.000 0.00 0.00 0.00 4.95
777 778 1.295746 GAGACGGGTTTGAGGGGTC 59.704 63.158 0.00 0.00 0.00 4.46
778 779 2.181445 GAGACGGGTTTGAGGGGTCC 62.181 65.000 0.00 0.00 0.00 4.46
779 780 3.600898 GACGGGTTTGAGGGGTCCG 62.601 68.421 0.00 0.00 45.42 4.79
780 781 4.404098 CGGGTTTGAGGGGTCCGG 62.404 72.222 0.00 0.00 37.35 5.14
781 782 3.254617 GGGTTTGAGGGGTCCGGT 61.255 66.667 0.00 0.00 0.00 5.28
782 783 2.837326 GGGTTTGAGGGGTCCGGTT 61.837 63.158 0.00 0.00 0.00 4.44
783 784 1.602605 GGTTTGAGGGGTCCGGTTG 60.603 63.158 0.00 0.00 0.00 3.77
784 785 1.452801 GTTTGAGGGGTCCGGTTGA 59.547 57.895 0.00 0.00 0.00 3.18
785 786 0.179012 GTTTGAGGGGTCCGGTTGAA 60.179 55.000 0.00 0.00 0.00 2.69
786 787 0.109723 TTTGAGGGGTCCGGTTGAAG 59.890 55.000 0.00 0.00 0.00 3.02
787 788 0.765135 TTGAGGGGTCCGGTTGAAGA 60.765 55.000 0.00 0.00 0.00 2.87
788 789 0.546747 TGAGGGGTCCGGTTGAAGAT 60.547 55.000 0.00 0.00 0.00 2.40
789 790 0.107654 GAGGGGTCCGGTTGAAGATG 60.108 60.000 0.00 0.00 0.00 2.90
790 791 1.749258 GGGGTCCGGTTGAAGATGC 60.749 63.158 0.00 0.00 0.00 3.91
791 792 1.299976 GGGTCCGGTTGAAGATGCT 59.700 57.895 0.00 0.00 0.00 3.79
792 793 0.744771 GGGTCCGGTTGAAGATGCTC 60.745 60.000 0.00 0.00 0.00 4.26
793 794 0.250513 GGTCCGGTTGAAGATGCTCT 59.749 55.000 0.00 0.00 0.00 4.09
794 795 1.480954 GGTCCGGTTGAAGATGCTCTA 59.519 52.381 0.00 0.00 0.00 2.43
795 796 2.093658 GGTCCGGTTGAAGATGCTCTAA 60.094 50.000 0.00 0.00 0.00 2.10
796 797 2.930682 GTCCGGTTGAAGATGCTCTAAC 59.069 50.000 0.00 0.00 0.00 2.34
797 798 2.832129 TCCGGTTGAAGATGCTCTAACT 59.168 45.455 0.00 0.00 0.00 2.24
798 799 3.260884 TCCGGTTGAAGATGCTCTAACTT 59.739 43.478 0.00 0.00 0.00 2.66
799 800 3.372206 CCGGTTGAAGATGCTCTAACTTG 59.628 47.826 0.00 0.00 0.00 3.16
800 801 3.997021 CGGTTGAAGATGCTCTAACTTGT 59.003 43.478 0.00 0.00 0.00 3.16
801 802 4.452455 CGGTTGAAGATGCTCTAACTTGTT 59.548 41.667 0.00 0.00 0.00 2.83
802 803 5.637810 CGGTTGAAGATGCTCTAACTTGTTA 59.362 40.000 0.00 0.00 0.00 2.41
803 804 6.401153 CGGTTGAAGATGCTCTAACTTGTTAC 60.401 42.308 0.00 0.00 0.00 2.50
804 805 6.401153 GGTTGAAGATGCTCTAACTTGTTACG 60.401 42.308 0.00 0.00 0.00 3.18
805 806 4.625742 TGAAGATGCTCTAACTTGTTACGC 59.374 41.667 0.00 0.00 0.00 4.42
806 807 4.188247 AGATGCTCTAACTTGTTACGCA 57.812 40.909 12.12 12.12 0.00 5.24
807 808 3.927142 AGATGCTCTAACTTGTTACGCAC 59.073 43.478 12.03 8.40 0.00 5.34
808 809 3.100658 TGCTCTAACTTGTTACGCACA 57.899 42.857 7.97 0.00 0.00 4.57
809 810 3.459145 TGCTCTAACTTGTTACGCACAA 58.541 40.909 1.17 1.17 43.55 3.33
810 811 3.872182 TGCTCTAACTTGTTACGCACAAA 59.128 39.130 2.68 0.00 45.11 2.83
811 812 4.513692 TGCTCTAACTTGTTACGCACAAAT 59.486 37.500 2.68 0.00 45.11 2.32
812 813 5.008217 TGCTCTAACTTGTTACGCACAAATT 59.992 36.000 2.68 1.87 45.11 1.82
813 814 5.339611 GCTCTAACTTGTTACGCACAAATTG 59.660 40.000 5.32 0.00 45.11 2.32
814 815 5.209240 TCTAACTTGTTACGCACAAATTGC 58.791 37.500 5.32 0.00 45.11 3.56
886 887 5.996513 GCATAGAATGTGATGATTCAGTCCT 59.003 40.000 0.00 0.00 35.16 3.85
893 894 9.383519 GAATGTGATGATTCAGTCCTAAACTTA 57.616 33.333 0.00 0.00 35.45 2.24
924 925 3.518303 GACTCTACCATACCCCAACTTGT 59.482 47.826 0.00 0.00 0.00 3.16
927 928 2.773993 ACCATACCCCAACTTGTACG 57.226 50.000 0.00 0.00 0.00 3.67
960 961 1.367346 TAGTCCCAGGCCAATCACAA 58.633 50.000 5.01 0.00 0.00 3.33
1051 1053 0.463833 CCCTATTCAACCCGCACTCC 60.464 60.000 0.00 0.00 0.00 3.85
1153 1161 1.395045 CCAGCTCCATCTCTACGCCA 61.395 60.000 0.00 0.00 0.00 5.69
1167 1175 3.360340 GCCAACAGCAAGCTCGCT 61.360 61.111 0.00 0.00 45.21 4.93
1216 1224 3.450115 GTCTCCTGGTCGGACGGG 61.450 72.222 11.07 11.07 36.69 5.28
1314 1324 3.551496 CTCCAAGGTGAAGCCCGCA 62.551 63.158 0.00 0.00 38.26 5.69
2091 4395 2.893398 CTAGGACCAGTGGCGGAC 59.107 66.667 9.78 0.00 0.00 4.79
2205 4513 8.188799 TCATCCTCAACTTAATCTGTAACGTAG 58.811 37.037 0.00 0.00 0.00 3.51
2372 4684 3.922171 AAATTAGACTGCCTGGGAGAG 57.078 47.619 22.89 0.00 0.00 3.20
2538 4858 1.439228 CATCCGCAGTCCTCATCGT 59.561 57.895 0.00 0.00 0.00 3.73
2554 4880 1.445871 TCGTTCTACGCTGCTACTCA 58.554 50.000 0.00 0.00 42.21 3.41
2619 4945 0.760567 TCTCTGTCCCTGTGTGCAGT 60.761 55.000 0.00 0.00 41.02 4.40
2790 5119 3.668386 GCACGCTTTTGCCTACCT 58.332 55.556 0.00 0.00 43.93 3.08
2791 5120 1.502190 GCACGCTTTTGCCTACCTC 59.498 57.895 0.00 0.00 43.93 3.85
2792 5121 1.234615 GCACGCTTTTGCCTACCTCA 61.235 55.000 0.00 0.00 43.93 3.86
2793 5122 0.798776 CACGCTTTTGCCTACCTCAG 59.201 55.000 0.00 0.00 43.93 3.35
2794 5123 0.955919 ACGCTTTTGCCTACCTCAGC 60.956 55.000 0.00 0.00 43.93 4.26
2795 5124 1.796796 GCTTTTGCCTACCTCAGCG 59.203 57.895 0.00 0.00 40.15 5.18
2796 5125 1.648467 GCTTTTGCCTACCTCAGCGG 61.648 60.000 0.00 0.00 40.15 5.52
2822 5151 1.376037 GGCTTCACCTTGGAGACGG 60.376 63.158 0.00 0.00 34.51 4.79
2860 5189 4.295119 GTCACGTCGCCCACCACT 62.295 66.667 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.749621 ACGGAGCTTGACCAAATGATTC 59.250 45.455 0.00 0.00 0.00 2.52
2 3 2.749621 GACGGAGCTTGACCAAATGATT 59.250 45.455 0.00 0.00 0.00 2.57
6 7 0.673644 CCGACGGAGCTTGACCAAAT 60.674 55.000 8.64 0.00 0.00 2.32
7 8 1.301401 CCGACGGAGCTTGACCAAA 60.301 57.895 8.64 0.00 0.00 3.28
8 9 2.342279 CCGACGGAGCTTGACCAA 59.658 61.111 8.64 0.00 0.00 3.67
9 10 3.691342 CCCGACGGAGCTTGACCA 61.691 66.667 17.49 0.00 0.00 4.02
13 14 3.088941 TATGGCCCGACGGAGCTTG 62.089 63.158 17.49 0.00 0.00 4.01
14 15 2.762459 TATGGCCCGACGGAGCTT 60.762 61.111 17.49 11.10 0.00 3.74
15 16 3.537874 GTATGGCCCGACGGAGCT 61.538 66.667 17.49 5.00 0.00 4.09
16 17 3.501458 GAGTATGGCCCGACGGAGC 62.501 68.421 17.49 16.75 0.00 4.70
17 18 2.728817 GAGTATGGCCCGACGGAG 59.271 66.667 17.49 6.74 0.00 4.63
18 19 2.836360 GGAGTATGGCCCGACGGA 60.836 66.667 17.49 0.00 0.00 4.69
19 20 2.838225 AGGAGTATGGCCCGACGG 60.838 66.667 6.99 6.99 0.00 4.79
20 21 1.464376 ATGAGGAGTATGGCCCGACG 61.464 60.000 0.00 0.00 0.00 5.12
21 22 0.318762 GATGAGGAGTATGGCCCGAC 59.681 60.000 0.00 0.00 0.00 4.79
22 23 0.832135 GGATGAGGAGTATGGCCCGA 60.832 60.000 0.00 0.00 0.00 5.14
23 24 1.674057 GGATGAGGAGTATGGCCCG 59.326 63.158 0.00 0.00 0.00 6.13
24 25 0.832135 TCGGATGAGGAGTATGGCCC 60.832 60.000 0.00 0.00 0.00 5.80
25 26 0.318762 GTCGGATGAGGAGTATGGCC 59.681 60.000 0.00 0.00 0.00 5.36
26 27 0.039074 CGTCGGATGAGGAGTATGGC 60.039 60.000 0.00 0.00 31.63 4.40
27 28 1.605753 TCGTCGGATGAGGAGTATGG 58.394 55.000 0.00 0.00 34.26 2.74
28 29 2.605823 GCTTCGTCGGATGAGGAGTATG 60.606 54.545 12.95 0.00 39.90 2.39
29 30 1.609555 GCTTCGTCGGATGAGGAGTAT 59.390 52.381 12.95 0.00 39.90 2.12
30 31 1.022735 GCTTCGTCGGATGAGGAGTA 58.977 55.000 12.95 0.00 39.90 2.59
31 32 0.965866 TGCTTCGTCGGATGAGGAGT 60.966 55.000 12.95 0.00 39.90 3.85
32 33 0.387202 ATGCTTCGTCGGATGAGGAG 59.613 55.000 12.95 4.30 39.90 3.69
33 34 0.385751 GATGCTTCGTCGGATGAGGA 59.614 55.000 12.95 3.92 37.23 3.71
34 35 0.936764 CGATGCTTCGTCGGATGAGG 60.937 60.000 13.46 5.06 38.96 3.86
35 36 2.499981 CGATGCTTCGTCGGATGAG 58.500 57.895 13.46 0.00 38.96 2.90
36 37 4.709982 CGATGCTTCGTCGGATGA 57.290 55.556 13.46 0.00 38.96 2.92
41 42 2.217112 GGATTCCGATGCTTCGTCG 58.783 57.895 19.21 6.59 43.97 5.12
49 50 9.966700 TTGTTAGGTACATGACGGATTCCGATG 62.967 44.444 30.80 24.42 42.60 3.84
50 51 8.083014 TTGTTAGGTACATGACGGATTCCGAT 62.083 42.308 30.80 15.19 42.60 4.18
51 52 6.843070 TTGTTAGGTACATGACGGATTCCGA 61.843 44.000 30.80 10.61 42.60 4.55
52 53 4.678574 TTGTTAGGTACATGACGGATTCCG 60.679 45.833 23.21 23.21 44.30 4.30
53 54 4.395959 TGTTAGGTACATGACGGATTCC 57.604 45.455 0.00 0.00 0.00 3.01
54 55 6.730960 TTTTGTTAGGTACATGACGGATTC 57.269 37.500 0.00 0.00 36.44 2.52
55 56 6.882140 TGATTTTGTTAGGTACATGACGGATT 59.118 34.615 0.00 0.00 36.44 3.01
56 57 6.315393 GTGATTTTGTTAGGTACATGACGGAT 59.685 38.462 0.00 0.00 36.44 4.18
57 58 5.640357 GTGATTTTGTTAGGTACATGACGGA 59.360 40.000 0.00 0.00 36.44 4.69
58 59 5.410132 TGTGATTTTGTTAGGTACATGACGG 59.590 40.000 0.00 0.00 36.44 4.79
59 60 6.474819 TGTGATTTTGTTAGGTACATGACG 57.525 37.500 0.00 0.00 36.44 4.35
65 66 9.498307 CGGAATTATTGTGATTTTGTTAGGTAC 57.502 33.333 0.00 0.00 0.00 3.34
66 67 8.679100 CCGGAATTATTGTGATTTTGTTAGGTA 58.321 33.333 0.00 0.00 0.00 3.08
67 68 7.177744 ACCGGAATTATTGTGATTTTGTTAGGT 59.822 33.333 9.46 0.00 0.00 3.08
68 69 7.543756 ACCGGAATTATTGTGATTTTGTTAGG 58.456 34.615 9.46 0.00 0.00 2.69
69 70 7.428183 CGACCGGAATTATTGTGATTTTGTTAG 59.572 37.037 9.46 0.00 0.00 2.34
70 71 7.244898 CGACCGGAATTATTGTGATTTTGTTA 58.755 34.615 9.46 0.00 0.00 2.41
71 72 6.090129 CGACCGGAATTATTGTGATTTTGTT 58.910 36.000 9.46 0.00 0.00 2.83
72 73 5.392595 CCGACCGGAATTATTGTGATTTTGT 60.393 40.000 9.46 0.00 37.50 2.83
73 74 5.034152 CCGACCGGAATTATTGTGATTTTG 58.966 41.667 9.46 0.00 37.50 2.44
74 75 4.703093 ACCGACCGGAATTATTGTGATTTT 59.297 37.500 16.07 0.00 38.96 1.82
75 76 4.266714 ACCGACCGGAATTATTGTGATTT 58.733 39.130 16.07 0.00 38.96 2.17
76 77 3.875134 GACCGACCGGAATTATTGTGATT 59.125 43.478 16.07 0.00 38.96 2.57
77 78 3.118555 TGACCGACCGGAATTATTGTGAT 60.119 43.478 16.07 0.00 38.96 3.06
78 79 2.234168 TGACCGACCGGAATTATTGTGA 59.766 45.455 16.07 0.00 38.96 3.58
79 80 2.623535 TGACCGACCGGAATTATTGTG 58.376 47.619 16.07 0.00 38.96 3.33
80 81 3.337694 TTGACCGACCGGAATTATTGT 57.662 42.857 16.07 0.00 38.96 2.71
81 82 3.625764 ACATTGACCGACCGGAATTATTG 59.374 43.478 16.07 7.25 38.96 1.90
82 83 3.625764 CACATTGACCGACCGGAATTATT 59.374 43.478 16.07 0.00 38.96 1.40
83 84 3.202906 CACATTGACCGACCGGAATTAT 58.797 45.455 16.07 0.53 38.96 1.28
84 85 2.027929 ACACATTGACCGACCGGAATTA 60.028 45.455 16.07 0.00 38.96 1.40
85 86 1.271163 ACACATTGACCGACCGGAATT 60.271 47.619 16.07 0.00 38.96 2.17
86 87 0.323629 ACACATTGACCGACCGGAAT 59.676 50.000 16.07 2.57 38.96 3.01
87 88 0.320073 GACACATTGACCGACCGGAA 60.320 55.000 16.07 0.00 38.96 4.30
88 89 1.290955 GACACATTGACCGACCGGA 59.709 57.895 16.07 0.00 38.96 5.14
89 90 2.092291 CGACACATTGACCGACCGG 61.092 63.158 6.94 6.94 42.03 5.28
90 91 0.665068 TTCGACACATTGACCGACCG 60.665 55.000 0.00 0.00 0.00 4.79
91 92 0.788391 GTTCGACACATTGACCGACC 59.212 55.000 0.00 0.00 0.00 4.79
92 93 1.493772 TGTTCGACACATTGACCGAC 58.506 50.000 0.00 0.00 0.00 4.79
93 94 3.969995 TGTTCGACACATTGACCGA 57.030 47.368 0.00 0.00 0.00 4.69
103 104 1.946745 TGTGCTTGATGTGTTCGACA 58.053 45.000 0.00 0.00 39.53 4.35
104 105 2.349817 CCTTGTGCTTGATGTGTTCGAC 60.350 50.000 0.00 0.00 0.00 4.20
105 106 1.872952 CCTTGTGCTTGATGTGTTCGA 59.127 47.619 0.00 0.00 0.00 3.71
106 107 1.664016 GCCTTGTGCTTGATGTGTTCG 60.664 52.381 0.00 0.00 36.87 3.95
107 108 1.664016 CGCCTTGTGCTTGATGTGTTC 60.664 52.381 0.00 0.00 38.05 3.18
108 109 0.311790 CGCCTTGTGCTTGATGTGTT 59.688 50.000 0.00 0.00 38.05 3.32
109 110 1.518056 CCGCCTTGTGCTTGATGTGT 61.518 55.000 0.00 0.00 38.05 3.72
110 111 1.210931 CCGCCTTGTGCTTGATGTG 59.789 57.895 0.00 0.00 38.05 3.21
111 112 0.957395 CTCCGCCTTGTGCTTGATGT 60.957 55.000 0.00 0.00 38.05 3.06
112 113 1.798735 CTCCGCCTTGTGCTTGATG 59.201 57.895 0.00 0.00 38.05 3.07
113 114 2.042831 GCTCCGCCTTGTGCTTGAT 61.043 57.895 0.00 0.00 38.05 2.57
114 115 2.669569 GCTCCGCCTTGTGCTTGA 60.670 61.111 0.00 0.00 38.05 3.02
115 116 3.741476 GGCTCCGCCTTGTGCTTG 61.741 66.667 0.00 0.00 46.69 4.01
124 125 2.897350 CAATTCTCCGGCTCCGCC 60.897 66.667 0.00 0.00 46.75 6.13
125 126 3.577313 GCAATTCTCCGGCTCCGC 61.577 66.667 0.00 0.00 38.24 5.54
126 127 2.897350 GGCAATTCTCCGGCTCCG 60.897 66.667 0.00 0.48 39.44 4.63
127 128 2.869503 TTCGGCAATTCTCCGGCTCC 62.870 60.000 13.78 0.00 46.43 4.70
128 129 1.449601 TTCGGCAATTCTCCGGCTC 60.450 57.895 13.78 0.00 46.43 4.70
129 130 1.745489 GTTCGGCAATTCTCCGGCT 60.745 57.895 13.78 0.00 46.43 5.52
130 131 2.791927 GTTCGGCAATTCTCCGGC 59.208 61.111 13.78 5.88 46.43 6.13
131 132 0.458889 TACGTTCGGCAATTCTCCGG 60.459 55.000 13.78 0.00 46.43 5.14
133 134 1.004595 GGTACGTTCGGCAATTCTCC 58.995 55.000 0.00 0.00 0.00 3.71
134 135 1.392510 GTGGTACGTTCGGCAATTCTC 59.607 52.381 0.00 0.00 0.00 2.87
135 136 1.435577 GTGGTACGTTCGGCAATTCT 58.564 50.000 0.00 0.00 0.00 2.40
136 137 0.094046 CGTGGTACGTTCGGCAATTC 59.906 55.000 0.00 0.00 36.74 2.17
137 138 1.293267 CCGTGGTACGTTCGGCAATT 61.293 55.000 0.00 0.00 40.58 2.32
138 139 1.738830 CCGTGGTACGTTCGGCAAT 60.739 57.895 0.00 0.00 40.58 3.56
139 140 2.356075 CCGTGGTACGTTCGGCAA 60.356 61.111 0.00 0.00 40.58 4.52
140 141 3.604667 ACCGTGGTACGTTCGGCA 61.605 61.111 17.50 0.00 46.92 5.69
141 142 3.107661 CACCGTGGTACGTTCGGC 61.108 66.667 17.50 0.00 46.92 5.54
143 144 3.107661 GCCACCGTGGTACGTTCG 61.108 66.667 18.95 0.00 40.58 3.95
144 145 3.107661 CGCCACCGTGGTACGTTC 61.108 66.667 18.95 0.14 40.58 3.95
191 192 3.418744 GAAGAGCGCTCCCGTCCTC 62.419 68.421 32.94 15.92 36.67 3.71
192 193 3.453679 GAAGAGCGCTCCCGTCCT 61.454 66.667 32.94 11.52 36.67 3.85
193 194 4.516195 GGAAGAGCGCTCCCGTCC 62.516 72.222 32.94 29.55 36.67 4.79
194 195 4.856607 CGGAAGAGCGCTCCCGTC 62.857 72.222 33.65 27.00 37.40 4.79
197 198 4.214327 CTCCGGAAGAGCGCTCCC 62.214 72.222 32.94 25.58 35.31 4.30
211 212 4.821589 CTCTCCGCCGCCAACTCC 62.822 72.222 0.00 0.00 0.00 3.85
221 222 2.815647 CGTTTCCAGGCTCTCCGC 60.816 66.667 0.00 0.00 37.47 5.54
222 223 1.446272 GTCGTTTCCAGGCTCTCCG 60.446 63.158 0.00 0.00 37.47 4.63
223 224 0.390472 CAGTCGTTTCCAGGCTCTCC 60.390 60.000 0.00 0.00 0.00 3.71
224 225 1.016653 GCAGTCGTTTCCAGGCTCTC 61.017 60.000 0.00 0.00 0.00 3.20
225 226 1.004440 GCAGTCGTTTCCAGGCTCT 60.004 57.895 0.00 0.00 0.00 4.09
226 227 2.383527 CGCAGTCGTTTCCAGGCTC 61.384 63.158 0.00 0.00 0.00 4.70
227 228 2.357517 CGCAGTCGTTTCCAGGCT 60.358 61.111 0.00 0.00 0.00 4.58
228 229 3.423154 CCGCAGTCGTTTCCAGGC 61.423 66.667 0.00 0.00 0.00 4.85
229 230 1.738099 CTCCGCAGTCGTTTCCAGG 60.738 63.158 0.00 0.00 0.00 4.45
230 231 2.383527 GCTCCGCAGTCGTTTCCAG 61.384 63.158 0.00 0.00 0.00 3.86
231 232 2.357034 GCTCCGCAGTCGTTTCCA 60.357 61.111 0.00 0.00 0.00 3.53
232 233 2.048127 AGCTCCGCAGTCGTTTCC 60.048 61.111 0.00 0.00 0.00 3.13
233 234 3.016474 GCAGCTCCGCAGTCGTTTC 62.016 63.158 0.00 0.00 0.00 2.78
234 235 3.044305 GCAGCTCCGCAGTCGTTT 61.044 61.111 0.00 0.00 0.00 3.60
600 601 2.645192 CGACCCCACCCCAAATTGC 61.645 63.158 0.00 0.00 0.00 3.56
601 602 1.981853 CCGACCCCACCCCAAATTG 60.982 63.158 0.00 0.00 0.00 2.32
602 603 2.443324 CCGACCCCACCCCAAATT 59.557 61.111 0.00 0.00 0.00 1.82
603 604 3.668142 CCCGACCCCACCCCAAAT 61.668 66.667 0.00 0.00 0.00 2.32
608 609 4.340246 GACAACCCGACCCCACCC 62.340 72.222 0.00 0.00 0.00 4.61
609 610 4.692475 CGACAACCCGACCCCACC 62.692 72.222 0.00 0.00 0.00 4.61
610 611 4.692475 CCGACAACCCGACCCCAC 62.692 72.222 0.00 0.00 0.00 4.61
613 614 4.383861 GACCCGACAACCCGACCC 62.384 72.222 0.00 0.00 0.00 4.46
614 615 4.383861 GGACCCGACAACCCGACC 62.384 72.222 0.00 0.00 0.00 4.79
615 616 3.167822 TTGGACCCGACAACCCGAC 62.168 63.158 0.00 0.00 0.00 4.79
616 617 2.843411 TTGGACCCGACAACCCGA 60.843 61.111 0.00 0.00 0.00 5.14
617 618 2.667199 GTTGGACCCGACAACCCG 60.667 66.667 1.58 0.00 41.70 5.28
618 619 2.667199 CGTTGGACCCGACAACCC 60.667 66.667 7.18 0.00 43.95 4.11
619 620 2.109593 ACGTTGGACCCGACAACC 59.890 61.111 7.18 0.00 43.95 3.77
620 621 2.248835 CCACGTTGGACCCGACAAC 61.249 63.158 7.18 0.00 40.96 3.32
621 622 2.109387 CCACGTTGGACCCGACAA 59.891 61.111 7.18 0.00 40.96 3.18
622 623 4.612412 GCCACGTTGGACCCGACA 62.612 66.667 8.04 0.00 40.96 4.35
628 629 4.309950 ACTCCCGCCACGTTGGAC 62.310 66.667 8.04 0.01 40.96 4.02
629 630 4.308458 CACTCCCGCCACGTTGGA 62.308 66.667 8.04 1.15 40.96 3.53
647 648 3.966543 GATATGGGGGTGCCCGGG 61.967 72.222 19.09 19.09 46.66 5.73
648 649 3.966543 GGATATGGGGGTGCCCGG 61.967 72.222 0.00 0.00 46.66 5.73
649 650 4.329545 CGGATATGGGGGTGCCCG 62.330 72.222 0.54 0.00 46.66 6.13
650 651 4.660938 GCGGATATGGGGGTGCCC 62.661 72.222 0.00 0.00 44.51 5.36
651 652 4.660938 GGCGGATATGGGGGTGCC 62.661 72.222 0.00 0.00 35.04 5.01
652 653 4.660938 GGGCGGATATGGGGGTGC 62.661 72.222 0.00 0.00 0.00 5.01
653 654 3.966543 GGGGCGGATATGGGGGTG 61.967 72.222 0.00 0.00 0.00 4.61
654 655 2.424989 TATGGGGCGGATATGGGGGT 62.425 60.000 0.00 0.00 0.00 4.95
655 656 0.993509 ATATGGGGCGGATATGGGGG 60.994 60.000 0.00 0.00 0.00 5.40
656 657 0.926293 AATATGGGGCGGATATGGGG 59.074 55.000 0.00 0.00 0.00 4.96
657 658 2.291540 ACAAATATGGGGCGGATATGGG 60.292 50.000 0.00 0.00 0.00 4.00
658 659 2.754552 CACAAATATGGGGCGGATATGG 59.245 50.000 0.00 0.00 0.00 2.74
659 660 2.164219 GCACAAATATGGGGCGGATATG 59.836 50.000 0.00 0.00 0.00 1.78
660 661 2.041620 AGCACAAATATGGGGCGGATAT 59.958 45.455 0.00 0.00 36.45 1.63
661 662 1.423541 AGCACAAATATGGGGCGGATA 59.576 47.619 0.00 0.00 36.45 2.59
662 663 0.185901 AGCACAAATATGGGGCGGAT 59.814 50.000 0.00 0.00 36.45 4.18
663 664 0.751277 CAGCACAAATATGGGGCGGA 60.751 55.000 0.00 0.00 36.45 5.54
664 665 1.735360 CAGCACAAATATGGGGCGG 59.265 57.895 0.00 0.00 36.45 6.13
665 666 0.751277 TCCAGCACAAATATGGGGCG 60.751 55.000 0.00 0.00 36.45 6.13
666 667 1.708341 ATCCAGCACAAATATGGGGC 58.292 50.000 0.00 0.00 34.71 5.80
667 668 4.665451 TCATATCCAGCACAAATATGGGG 58.335 43.478 0.00 0.00 35.19 4.96
668 669 4.703575 CCTCATATCCAGCACAAATATGGG 59.296 45.833 0.00 0.00 35.19 4.00
669 670 4.703575 CCCTCATATCCAGCACAAATATGG 59.296 45.833 0.00 0.00 35.19 2.74
670 671 5.182570 CACCCTCATATCCAGCACAAATATG 59.817 44.000 0.00 0.00 35.58 1.78
671 672 5.319453 CACCCTCATATCCAGCACAAATAT 58.681 41.667 0.00 0.00 0.00 1.28
672 673 4.717877 CACCCTCATATCCAGCACAAATA 58.282 43.478 0.00 0.00 0.00 1.40
673 674 3.559069 CACCCTCATATCCAGCACAAAT 58.441 45.455 0.00 0.00 0.00 2.32
674 675 2.945440 GCACCCTCATATCCAGCACAAA 60.945 50.000 0.00 0.00 0.00 2.83
675 676 1.408683 GCACCCTCATATCCAGCACAA 60.409 52.381 0.00 0.00 0.00 3.33
676 677 0.181114 GCACCCTCATATCCAGCACA 59.819 55.000 0.00 0.00 0.00 4.57
677 678 0.471617 AGCACCCTCATATCCAGCAC 59.528 55.000 0.00 0.00 0.00 4.40
678 679 0.471191 CAGCACCCTCATATCCAGCA 59.529 55.000 0.00 0.00 0.00 4.41
679 680 0.250640 CCAGCACCCTCATATCCAGC 60.251 60.000 0.00 0.00 0.00 4.85
680 681 1.071385 GACCAGCACCCTCATATCCAG 59.929 57.143 0.00 0.00 0.00 3.86
681 682 1.131638 GACCAGCACCCTCATATCCA 58.868 55.000 0.00 0.00 0.00 3.41
682 683 1.071385 CTGACCAGCACCCTCATATCC 59.929 57.143 0.00 0.00 0.00 2.59
683 684 2.540265 CTGACCAGCACCCTCATATC 57.460 55.000 0.00 0.00 0.00 1.63
699 700 1.371183 CCTCAAACGTCAGGGCTGA 59.629 57.895 0.00 0.00 37.24 4.26
700 701 1.672356 CCCTCAAACGTCAGGGCTG 60.672 63.158 12.91 0.00 43.29 4.85
701 702 2.750350 CCCTCAAACGTCAGGGCT 59.250 61.111 12.91 0.00 43.29 5.19
704 705 1.333619 CAAACACCCTCAAACGTCAGG 59.666 52.381 0.00 0.00 0.00 3.86
705 706 2.014128 ACAAACACCCTCAAACGTCAG 58.986 47.619 0.00 0.00 0.00 3.51
706 707 1.740585 CACAAACACCCTCAAACGTCA 59.259 47.619 0.00 0.00 0.00 4.35
707 708 2.011222 TCACAAACACCCTCAAACGTC 58.989 47.619 0.00 0.00 0.00 4.34
708 709 2.116827 TCACAAACACCCTCAAACGT 57.883 45.000 0.00 0.00 0.00 3.99
709 710 3.495670 TTTCACAAACACCCTCAAACG 57.504 42.857 0.00 0.00 0.00 3.60
710 711 4.041723 CGATTTCACAAACACCCTCAAAC 58.958 43.478 0.00 0.00 0.00 2.93
711 712 3.697045 ACGATTTCACAAACACCCTCAAA 59.303 39.130 0.00 0.00 0.00 2.69
712 713 3.066064 CACGATTTCACAAACACCCTCAA 59.934 43.478 0.00 0.00 0.00 3.02
713 714 2.616376 CACGATTTCACAAACACCCTCA 59.384 45.455 0.00 0.00 0.00 3.86
714 715 2.875933 TCACGATTTCACAAACACCCTC 59.124 45.455 0.00 0.00 0.00 4.30
715 716 2.616842 GTCACGATTTCACAAACACCCT 59.383 45.455 0.00 0.00 0.00 4.34
716 717 2.616842 AGTCACGATTTCACAAACACCC 59.383 45.455 0.00 0.00 0.00 4.61
717 718 3.548014 CCAGTCACGATTTCACAAACACC 60.548 47.826 0.00 0.00 0.00 4.16
718 719 3.311322 TCCAGTCACGATTTCACAAACAC 59.689 43.478 0.00 0.00 0.00 3.32
719 720 3.311322 GTCCAGTCACGATTTCACAAACA 59.689 43.478 0.00 0.00 0.00 2.83
720 721 3.603857 CGTCCAGTCACGATTTCACAAAC 60.604 47.826 0.00 0.00 42.69 2.93
721 722 2.542178 CGTCCAGTCACGATTTCACAAA 59.458 45.455 0.00 0.00 42.69 2.83
722 723 2.131972 CGTCCAGTCACGATTTCACAA 58.868 47.619 0.00 0.00 42.69 3.33
723 724 1.604438 CCGTCCAGTCACGATTTCACA 60.604 52.381 0.00 0.00 42.69 3.58
724 725 1.068474 CCGTCCAGTCACGATTTCAC 58.932 55.000 0.00 0.00 42.69 3.18
725 726 0.669318 GCCGTCCAGTCACGATTTCA 60.669 55.000 0.00 0.00 42.69 2.69
726 727 1.359459 GGCCGTCCAGTCACGATTTC 61.359 60.000 0.00 0.00 42.69 2.17
727 728 1.375523 GGCCGTCCAGTCACGATTT 60.376 57.895 0.00 0.00 42.69 2.17
728 729 2.264794 GGCCGTCCAGTCACGATT 59.735 61.111 0.00 0.00 42.69 3.34
729 730 2.680352 AGGCCGTCCAGTCACGAT 60.680 61.111 0.00 0.00 42.69 3.73
730 731 3.680786 CAGGCCGTCCAGTCACGA 61.681 66.667 0.00 0.00 42.69 4.35
742 743 3.451894 CAAATGTCCGGGCAGGCC 61.452 66.667 16.89 1.81 40.77 5.19
743 744 2.361104 TCAAATGTCCGGGCAGGC 60.361 61.111 16.89 0.00 40.77 4.85
744 745 1.026718 GTCTCAAATGTCCGGGCAGG 61.027 60.000 16.89 6.88 42.97 4.85
745 746 1.361668 CGTCTCAAATGTCCGGGCAG 61.362 60.000 16.89 0.00 0.00 4.85
746 747 1.375396 CGTCTCAAATGTCCGGGCA 60.375 57.895 13.22 13.22 0.00 5.36
747 748 2.106683 CCGTCTCAAATGTCCGGGC 61.107 63.158 0.00 0.00 35.11 6.13
748 749 4.201951 CCGTCTCAAATGTCCGGG 57.798 61.111 0.00 0.00 35.11 5.73
749 750 0.321298 AACCCGTCTCAAATGTCCGG 60.321 55.000 0.00 0.00 38.39 5.14
750 751 1.196808 CAAACCCGTCTCAAATGTCCG 59.803 52.381 0.00 0.00 0.00 4.79
751 752 2.484264 CTCAAACCCGTCTCAAATGTCC 59.516 50.000 0.00 0.00 0.00 4.02
752 753 2.484264 CCTCAAACCCGTCTCAAATGTC 59.516 50.000 0.00 0.00 0.00 3.06
753 754 2.504367 CCTCAAACCCGTCTCAAATGT 58.496 47.619 0.00 0.00 0.00 2.71
754 755 1.812571 CCCTCAAACCCGTCTCAAATG 59.187 52.381 0.00 0.00 0.00 2.32
755 756 1.271926 CCCCTCAAACCCGTCTCAAAT 60.272 52.381 0.00 0.00 0.00 2.32
756 757 0.109723 CCCCTCAAACCCGTCTCAAA 59.890 55.000 0.00 0.00 0.00 2.69
757 758 1.057851 ACCCCTCAAACCCGTCTCAA 61.058 55.000 0.00 0.00 0.00 3.02
758 759 1.460689 ACCCCTCAAACCCGTCTCA 60.461 57.895 0.00 0.00 0.00 3.27
759 760 1.295746 GACCCCTCAAACCCGTCTC 59.704 63.158 0.00 0.00 0.00 3.36
760 761 2.222013 GGACCCCTCAAACCCGTCT 61.222 63.158 0.00 0.00 0.00 4.18
761 762 2.350134 GGACCCCTCAAACCCGTC 59.650 66.667 0.00 0.00 0.00 4.79
762 763 3.633116 CGGACCCCTCAAACCCGT 61.633 66.667 0.00 0.00 35.83 5.28
763 764 4.404098 CCGGACCCCTCAAACCCG 62.404 72.222 0.00 0.00 39.85 5.28
764 765 2.837326 AACCGGACCCCTCAAACCC 61.837 63.158 9.46 0.00 0.00 4.11
765 766 1.602605 CAACCGGACCCCTCAAACC 60.603 63.158 9.46 0.00 0.00 3.27
766 767 0.179012 TTCAACCGGACCCCTCAAAC 60.179 55.000 9.46 0.00 0.00 2.93
767 768 0.109723 CTTCAACCGGACCCCTCAAA 59.890 55.000 9.46 0.00 0.00 2.69
768 769 0.765135 TCTTCAACCGGACCCCTCAA 60.765 55.000 9.46 0.00 0.00 3.02
769 770 0.546747 ATCTTCAACCGGACCCCTCA 60.547 55.000 9.46 0.00 0.00 3.86
770 771 0.107654 CATCTTCAACCGGACCCCTC 60.108 60.000 9.46 0.00 0.00 4.30
771 772 1.991230 CATCTTCAACCGGACCCCT 59.009 57.895 9.46 0.00 0.00 4.79
772 773 1.749258 GCATCTTCAACCGGACCCC 60.749 63.158 9.46 0.00 0.00 4.95
773 774 0.744771 GAGCATCTTCAACCGGACCC 60.745 60.000 9.46 0.00 0.00 4.46
774 775 2.768834 GAGCATCTTCAACCGGACC 58.231 57.895 9.46 0.00 0.00 4.46
783 784 7.767280 TGTGCGTAACAAGTTAGAGCATCTTC 61.767 42.308 19.11 11.13 37.99 2.87
784 785 6.024918 TGTGCGTAACAAGTTAGAGCATCTT 61.025 40.000 19.11 0.00 37.99 2.40
785 786 4.560716 TGTGCGTAACAAGTTAGAGCATCT 60.561 41.667 19.11 0.00 42.60 2.90
786 787 3.678072 TGTGCGTAACAAGTTAGAGCATC 59.322 43.478 19.11 14.79 39.91 3.91
787 788 3.659786 TGTGCGTAACAAGTTAGAGCAT 58.340 40.909 19.11 0.00 39.91 3.79
788 789 3.100658 TGTGCGTAACAAGTTAGAGCA 57.899 42.857 14.85 14.85 37.47 4.26
811 812 1.598882 TCGGTTGCTGTACATTGCAA 58.401 45.000 16.17 16.17 45.40 4.08
812 813 1.535028 CTTCGGTTGCTGTACATTGCA 59.465 47.619 5.73 5.73 37.42 4.08
813 814 1.804151 TCTTCGGTTGCTGTACATTGC 59.196 47.619 0.00 0.00 0.00 3.56
814 815 2.416547 CCTCTTCGGTTGCTGTACATTG 59.583 50.000 0.00 0.00 0.00 2.82
815 816 2.038557 ACCTCTTCGGTTGCTGTACATT 59.961 45.455 0.00 0.00 46.37 2.71
816 817 1.623811 ACCTCTTCGGTTGCTGTACAT 59.376 47.619 0.00 0.00 46.37 2.29
817 818 1.045407 ACCTCTTCGGTTGCTGTACA 58.955 50.000 0.00 0.00 46.37 2.90
818 819 3.308438 TTACCTCTTCGGTTGCTGTAC 57.692 47.619 0.00 0.00 46.37 2.90
819 820 4.441079 GCTATTACCTCTTCGGTTGCTGTA 60.441 45.833 0.00 0.00 46.37 2.74
820 821 3.679083 GCTATTACCTCTTCGGTTGCTGT 60.679 47.826 0.00 0.00 46.37 4.40
821 822 2.866762 GCTATTACCTCTTCGGTTGCTG 59.133 50.000 0.00 0.00 46.37 4.41
822 823 2.500098 TGCTATTACCTCTTCGGTTGCT 59.500 45.455 0.00 0.00 46.37 3.91
823 824 2.608090 GTGCTATTACCTCTTCGGTTGC 59.392 50.000 0.00 0.00 46.37 4.17
824 825 3.195661 GGTGCTATTACCTCTTCGGTTG 58.804 50.000 0.00 0.00 46.37 3.77
825 826 2.169978 GGGTGCTATTACCTCTTCGGTT 59.830 50.000 0.00 0.00 46.37 4.44
827 828 1.070289 GGGGTGCTATTACCTCTTCGG 59.930 57.143 0.00 0.00 38.23 4.30
828 829 1.760613 TGGGGTGCTATTACCTCTTCG 59.239 52.381 0.00 0.00 41.99 3.79
886 887 9.841295 ATGGTAGAGTCAAGTTTTGTAAGTTTA 57.159 29.630 0.00 0.00 0.00 2.01
893 894 5.514310 GGGGTATGGTAGAGTCAAGTTTTGT 60.514 44.000 0.00 0.00 0.00 2.83
924 925 5.128008 TGGGACTAAATCATCACATGACGTA 59.872 40.000 0.00 0.00 43.01 3.57
927 928 4.818546 CCTGGGACTAAATCATCACATGAC 59.181 45.833 0.00 0.00 43.01 3.06
960 961 0.537143 TTGGCTGCCAATTGTCGAGT 60.537 50.000 29.24 0.00 38.75 4.18
979 980 2.847234 TTGACCGGTCCAGCCACT 60.847 61.111 31.19 0.00 36.97 4.00
1031 1033 0.463833 GAGTGCGGGTTGAATAGGGG 60.464 60.000 0.00 0.00 0.00 4.79
1051 1053 4.572389 CGACAGAATTAATTCAGGTGGAGG 59.428 45.833 26.02 11.05 39.23 4.30
1147 1149 2.027073 CGAGCTTGCTGTTGGCGTA 61.027 57.895 0.00 0.00 45.43 4.42
1314 1324 3.865929 CTGCGACGGCCAGAACTGT 62.866 63.158 2.24 0.00 38.85 3.55
1348 1359 0.321996 GTTCAGAAGGAAGCGGAGGT 59.678 55.000 0.00 0.00 44.60 3.85
1772 3866 6.574350 TCCCTCTTGTTTTCTCTCGATATTC 58.426 40.000 0.00 0.00 0.00 1.75
2028 4332 2.818432 CAGTGATCTCTTTGCCAAGCTT 59.182 45.455 0.00 0.00 0.00 3.74
2091 4395 1.546029 GCCCAGGCTTTTCTTTGTAGG 59.454 52.381 0.08 0.00 38.26 3.18
2313 4622 6.325028 AGGCTATAGCACTCTGAAATTCAGTA 59.675 38.462 25.53 7.65 43.13 2.74
2372 4684 1.949257 CACAACCCGCAAACTCTCC 59.051 57.895 0.00 0.00 0.00 3.71
2428 4748 1.557443 GGTGACGGCAAGTTCAGACG 61.557 60.000 0.00 0.00 44.73 4.18
2508 4828 4.598894 CGGATGCTCCAGGGCGAG 62.599 72.222 0.00 0.00 35.91 5.03
2538 4858 1.135373 GCAGTGAGTAGCAGCGTAGAA 60.135 52.381 0.00 0.00 0.00 2.10
2619 4945 1.152989 GGCACGAACCACACGTACAA 61.153 55.000 0.00 0.00 42.07 2.41
2860 5189 1.118965 TCCCGAGCAAGAAGGTGACA 61.119 55.000 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.