Multiple sequence alignment - TraesCS3D01G228000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G228000 chr3D 100.000 3087 0 0 1 3087 309947107 309944021 0.000000e+00 5701
1 TraesCS3D01G228000 chr3B 93.563 2237 88 20 855 3051 411293306 411295526 0.000000e+00 3282
2 TraesCS3D01G228000 chr3B 89.419 482 19 6 1 473 411292836 411293294 2.060000e-161 579
3 TraesCS3D01G228000 chr3A 92.228 2303 66 26 865 3087 422619134 422621403 0.000000e+00 3157
4 TraesCS3D01G228000 chr3A 95.440 307 10 2 1 304 422614088 422614393 1.290000e-133 486
5 TraesCS3D01G228000 chr3A 86.581 313 30 8 571 875 422614578 422614886 4.930000e-88 335
6 TraesCS3D01G228000 chr3A 91.457 199 10 2 325 523 422614386 422614577 1.820000e-67 267
7 TraesCS3D01G228000 chr7D 78.333 240 31 9 573 801 486115198 486115427 5.370000e-28 135
8 TraesCS3D01G228000 chr7B 88.172 93 7 2 713 801 623758880 623758972 1.170000e-19 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G228000 chr3D 309944021 309947107 3086 True 5701.000000 5701 100.000000 1 3087 1 chr3D.!!$R1 3086
1 TraesCS3D01G228000 chr3B 411292836 411295526 2690 False 1930.500000 3282 91.491000 1 3051 2 chr3B.!!$F1 3050
2 TraesCS3D01G228000 chr3A 422619134 422621403 2269 False 3157.000000 3157 92.228000 865 3087 1 chr3A.!!$F1 2222
3 TraesCS3D01G228000 chr3A 422614088 422614886 798 False 362.666667 486 91.159333 1 875 3 chr3A.!!$F2 874

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
114 122 0.036388 ATCCCACAACCGCAGTGTAG 60.036 55.0 0.0 0.0 35.24 2.74 F
312 325 0.094558 CGTCACACACACACACACAC 59.905 55.0 0.0 0.0 0.00 3.82 F
1557 1603 0.037303 CAAGAGCAGGAGGAAGCCAA 59.963 55.0 0.0 0.0 0.00 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1543 1589 1.077858 CCTCTTGGCTTCCTCCTGC 60.078 63.158 0.00 0.0 0.0 4.85 R
1959 2009 1.080569 CAAAGCATGCGAACCCACC 60.081 57.895 13.01 0.0 0.0 4.61 R
2410 2485 0.179094 TTCAAGCGACAGTTGGACGT 60.179 50.000 0.00 0.0 0.0 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 2.438021 GCCCTTTCCCCAAAAAGAAAGT 59.562 45.455 10.59 0.00 44.86 2.66
68 74 4.836125 ATTCTTTTGCAAGCGAGAAAGA 57.164 36.364 19.26 13.16 36.61 2.52
70 76 3.952535 TCTTTTGCAAGCGAGAAAGAAC 58.047 40.909 6.54 0.00 35.76 3.01
114 122 0.036388 ATCCCACAACCGCAGTGTAG 60.036 55.000 0.00 0.00 35.24 2.74
183 196 3.063316 CGGTAATGCAACATGATGAACGA 59.937 43.478 7.22 0.00 0.00 3.85
184 197 4.342772 GGTAATGCAACATGATGAACGAC 58.657 43.478 7.22 0.00 0.00 4.34
224 237 3.597182 TGCATCCTCTGGATATTGGGTA 58.403 45.455 0.00 0.00 40.98 3.69
289 302 2.224744 TGGCATGCTTCTCCACAACTAA 60.225 45.455 18.92 0.00 0.00 2.24
309 322 0.173708 TAGCGTCACACACACACACA 59.826 50.000 0.00 0.00 0.00 3.72
310 323 1.060308 GCGTCACACACACACACAC 59.940 57.895 0.00 0.00 0.00 3.82
311 324 1.631144 GCGTCACACACACACACACA 61.631 55.000 0.00 0.00 0.00 3.72
312 325 0.094558 CGTCACACACACACACACAC 59.905 55.000 0.00 0.00 0.00 3.82
313 326 1.152510 GTCACACACACACACACACA 58.847 50.000 0.00 0.00 0.00 3.72
314 327 1.136085 GTCACACACACACACACACAC 60.136 52.381 0.00 0.00 0.00 3.82
315 328 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
316 329 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
317 330 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
318 331 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
319 332 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
320 333 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
321 334 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
322 335 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
323 336 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
324 337 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
325 338 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
326 339 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
327 340 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
328 341 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
329 342 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
330 343 1.265365 CACACACACACACACACACAA 59.735 47.619 0.00 0.00 0.00 3.33
417 430 1.084370 GGTCATTCTGAAGACCGGCG 61.084 60.000 17.31 0.00 44.23 6.46
422 435 1.750341 TTCTGAAGACCGGCGTTCCA 61.750 55.000 6.01 0.00 0.00 3.53
515 528 0.964358 AGGAGCTGTTGCATGCTTCC 60.964 55.000 20.33 14.74 42.74 3.46
524 537 4.170062 CATGCTTCCGCCACGCAG 62.170 66.667 0.00 0.00 37.06 5.18
528 541 2.892425 CTTCCGCCACGCAGGATC 60.892 66.667 0.00 0.00 41.22 3.36
529 542 4.812476 TTCCGCCACGCAGGATCG 62.812 66.667 0.00 0.00 41.22 3.69
555 568 4.096003 CCAATCACGGCCCGTCCT 62.096 66.667 5.41 0.00 38.32 3.85
556 569 2.819595 CAATCACGGCCCGTCCTG 60.820 66.667 5.41 0.00 38.32 3.86
557 570 4.778143 AATCACGGCCCGTCCTGC 62.778 66.667 5.41 0.00 38.32 4.85
595 608 6.528072 GTGGTTTTCAGTTTCAGTTTCAGAAG 59.472 38.462 0.00 0.00 0.00 2.85
596 609 6.432783 TGGTTTTCAGTTTCAGTTTCAGAAGA 59.567 34.615 0.00 0.00 0.00 2.87
597 610 7.040062 TGGTTTTCAGTTTCAGTTTCAGAAGAA 60.040 33.333 0.00 0.00 0.00 2.52
598 611 7.976175 GGTTTTCAGTTTCAGTTTCAGAAGAAT 59.024 33.333 0.00 0.00 32.89 2.40
599 612 9.358872 GTTTTCAGTTTCAGTTTCAGAAGAATT 57.641 29.630 0.00 0.00 32.89 2.17
618 631 4.895668 ATTCCAGCACCAACAAAATCAT 57.104 36.364 0.00 0.00 0.00 2.45
619 632 4.686191 TTCCAGCACCAACAAAATCATT 57.314 36.364 0.00 0.00 0.00 2.57
629 642 7.041916 GCACCAACAAAATCATTGAAATTCAGA 60.042 33.333 0.00 0.00 0.00 3.27
630 643 8.995220 CACCAACAAAATCATTGAAATTCAGAT 58.005 29.630 0.00 0.00 0.00 2.90
643 656 7.468922 TGAAATTCAGATAGTTCAGTATGCG 57.531 36.000 0.00 0.00 34.76 4.73
650 663 5.035443 AGATAGTTCAGTATGCGTTTCGAC 58.965 41.667 0.00 0.00 34.76 4.20
652 665 2.063266 GTTCAGTATGCGTTTCGACCA 58.937 47.619 0.00 0.00 34.76 4.02
659 672 1.098712 TGCGTTTCGACCAAAAGGCT 61.099 50.000 12.01 0.00 45.52 4.58
660 673 0.660300 GCGTTTCGACCAAAAGGCTG 60.660 55.000 5.28 0.00 43.28 4.85
666 679 5.619086 CGTTTCGACCAAAAGGCTGAAATAT 60.619 40.000 0.00 0.00 0.00 1.28
674 687 6.127253 ACCAAAAGGCTGAAATATTCATCTGG 60.127 38.462 0.00 0.00 39.30 3.86
676 689 7.364056 CCAAAAGGCTGAAATATTCATCTGGAA 60.364 37.037 0.00 0.00 39.30 3.53
754 768 8.293867 TGTGTACCACTGAAATTGCTTAAATAC 58.706 33.333 0.00 0.00 35.11 1.89
764 778 4.695217 TTGCTTAAATACTTTGGCCGAG 57.305 40.909 0.00 0.43 0.00 4.63
801 815 8.746922 TCAGTGATTGCTGAAATTAATGAAAC 57.253 30.769 1.29 0.00 41.93 2.78
804 818 7.752239 AGTGATTGCTGAAATTAATGAAACTCG 59.248 33.333 0.00 0.00 0.00 4.18
830 848 5.309323 CTGAAAGTGAAGACCAACAAACA 57.691 39.130 0.00 0.00 0.00 2.83
917 939 1.244816 GCTCCCGTTTAAAAGCCACT 58.755 50.000 0.00 0.00 0.00 4.00
1004 1044 2.556287 GCACGTCCAAAGCGAAGG 59.444 61.111 0.00 0.00 0.00 3.46
1543 1589 4.821589 GGCTCGCCGGACCAAGAG 62.822 72.222 5.05 6.29 0.00 2.85
1557 1603 0.037303 CAAGAGCAGGAGGAAGCCAA 59.963 55.000 0.00 0.00 0.00 4.52
1959 2009 3.375299 CACTCTCAAAGCTATTTTCCCCG 59.625 47.826 0.00 0.00 0.00 5.73
2014 2068 0.970937 AATCGTGGAGGAAGCGAGGA 60.971 55.000 0.00 0.00 38.06 3.71
2053 2107 2.995466 TCGCAAAGGAAGCAATGAAG 57.005 45.000 0.00 0.00 0.00 3.02
2128 2196 3.364366 GCGAGATCTTCTTTTGTGTGTGG 60.364 47.826 0.00 0.00 0.00 4.17
2335 2410 3.581755 TCGTGTGTGTAATTAGGCACTC 58.418 45.455 15.87 12.64 41.75 3.51
2337 2412 2.671396 GTGTGTGTAATTAGGCACTCCG 59.329 50.000 15.87 0.00 41.75 4.63
2376 2451 2.871022 GCCTATTGACACAGAGCATGAG 59.129 50.000 0.00 0.00 0.00 2.90
2498 2573 1.008538 GTGCGTGCAAGAACTTGGG 60.009 57.895 14.95 0.00 40.74 4.12
2506 2581 2.289195 TGCAAGAACTTGGGGTACGTAG 60.289 50.000 14.95 0.00 40.74 3.51
2512 2587 2.049372 ACTTGGGGTACGTAGTGGTTT 58.951 47.619 0.00 0.00 45.73 3.27
2527 2603 3.633986 AGTGGTTTCTTCTTGGCTCTTTG 59.366 43.478 0.00 0.00 0.00 2.77
2621 2697 0.179004 TCGGGAAAGCTGAAAAGGCA 60.179 50.000 0.00 0.00 0.00 4.75
2623 2699 0.318441 GGGAAAGCTGAAAAGGCACC 59.682 55.000 0.00 0.00 0.00 5.01
2624 2700 0.318441 GGAAAGCTGAAAAGGCACCC 59.682 55.000 0.00 0.00 0.00 4.61
2625 2701 0.039165 GAAAGCTGAAAAGGCACCCG 60.039 55.000 0.00 0.00 0.00 5.28
2626 2702 1.463553 AAAGCTGAAAAGGCACCCGG 61.464 55.000 0.00 0.00 0.00 5.73
2627 2703 3.373565 GCTGAAAAGGCACCCGGG 61.374 66.667 22.25 22.25 0.00 5.73
2628 2704 3.373565 CTGAAAAGGCACCCGGGC 61.374 66.667 24.08 7.42 43.80 6.13
2760 2847 0.723981 GCGTGATTCTCTTGTGAGGC 59.276 55.000 0.00 0.00 40.58 4.70
2761 2848 1.363744 CGTGATTCTCTTGTGAGGCC 58.636 55.000 0.00 0.00 40.58 5.19
3082 3196 4.505313 AGCTAGTTTAAGCACCAAAAGC 57.495 40.909 0.00 0.00 45.30 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 5.431420 TTCTCGCTTGCAAAAGAATAACA 57.569 34.783 12.23 0.00 0.00 2.41
68 74 5.934935 ATATTTTGTCAGTCGTTTCGGTT 57.065 34.783 0.00 0.00 0.00 4.44
70 76 7.000575 ACATATATTTTGTCAGTCGTTTCGG 57.999 36.000 0.00 0.00 0.00 4.30
183 196 2.660206 TGGCGTACCATTCTGCGT 59.340 55.556 0.00 0.00 42.67 5.24
224 237 2.065799 ACTTTTGTCTCATCCCCACCT 58.934 47.619 0.00 0.00 0.00 4.00
257 270 4.501071 AGAAGCATGCCAAATTGTCAATC 58.499 39.130 15.66 0.00 0.00 2.67
289 302 1.202475 TGTGTGTGTGTGTGACGCTAT 60.202 47.619 0.00 0.00 35.94 2.97
309 322 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
310 323 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
311 324 1.598882 TTGTGTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
312 325 2.695613 TTTGTGTGTGTGTGTGTGTG 57.304 45.000 0.00 0.00 0.00 3.82
313 326 3.316588 TCTTTTTGTGTGTGTGTGTGTGT 59.683 39.130 0.00 0.00 0.00 3.72
314 327 3.894920 TCTTTTTGTGTGTGTGTGTGTG 58.105 40.909 0.00 0.00 0.00 3.82
315 328 4.576216 TTCTTTTTGTGTGTGTGTGTGT 57.424 36.364 0.00 0.00 0.00 3.72
316 329 5.689514 TCTTTTCTTTTTGTGTGTGTGTGTG 59.310 36.000 0.00 0.00 0.00 3.82
317 330 5.689961 GTCTTTTCTTTTTGTGTGTGTGTGT 59.310 36.000 0.00 0.00 0.00 3.72
318 331 5.920273 AGTCTTTTCTTTTTGTGTGTGTGTG 59.080 36.000 0.00 0.00 0.00 3.82
319 332 6.084326 AGTCTTTTCTTTTTGTGTGTGTGT 57.916 33.333 0.00 0.00 0.00 3.72
320 333 6.251376 GCTAGTCTTTTCTTTTTGTGTGTGTG 59.749 38.462 0.00 0.00 0.00 3.82
321 334 6.072175 TGCTAGTCTTTTCTTTTTGTGTGTGT 60.072 34.615 0.00 0.00 0.00 3.72
322 335 6.321717 TGCTAGTCTTTTCTTTTTGTGTGTG 58.678 36.000 0.00 0.00 0.00 3.82
323 336 6.509418 TGCTAGTCTTTTCTTTTTGTGTGT 57.491 33.333 0.00 0.00 0.00 3.72
324 337 7.195646 TGATGCTAGTCTTTTCTTTTTGTGTG 58.804 34.615 0.00 0.00 0.00 3.82
325 338 7.283127 TCTGATGCTAGTCTTTTCTTTTTGTGT 59.717 33.333 0.00 0.00 0.00 3.72
326 339 7.589221 GTCTGATGCTAGTCTTTTCTTTTTGTG 59.411 37.037 0.00 0.00 0.00 3.33
327 340 7.255277 GGTCTGATGCTAGTCTTTTCTTTTTGT 60.255 37.037 0.00 0.00 0.00 2.83
328 341 7.080724 GGTCTGATGCTAGTCTTTTCTTTTTG 58.919 38.462 0.00 0.00 0.00 2.44
329 342 6.207614 GGGTCTGATGCTAGTCTTTTCTTTTT 59.792 38.462 0.00 0.00 0.00 1.94
330 343 5.707764 GGGTCTGATGCTAGTCTTTTCTTTT 59.292 40.000 0.00 0.00 0.00 2.27
417 430 2.882137 TCCGGTGATGAAAAACTGGAAC 59.118 45.455 0.00 0.00 46.54 3.62
422 435 2.287368 GCGTTTCCGGTGATGAAAAACT 60.287 45.455 0.00 0.00 33.80 2.66
474 487 1.455959 CCGGGAGACTGACTAGGGG 60.456 68.421 0.00 0.00 39.98 4.79
538 551 4.096003 AGGACGGGCCGTGATTGG 62.096 66.667 39.41 2.89 41.37 3.16
539 552 2.819595 CAGGACGGGCCGTGATTG 60.820 66.667 39.41 25.67 41.37 2.67
540 553 4.778143 GCAGGACGGGCCGTGATT 62.778 66.667 39.41 18.60 41.37 2.57
559 572 1.632948 GAAAACCACTAGGCGTCCGC 61.633 60.000 2.45 2.45 39.06 5.54
560 573 0.320073 TGAAAACCACTAGGCGTCCG 60.320 55.000 0.00 0.00 39.06 4.79
561 574 1.270678 ACTGAAAACCACTAGGCGTCC 60.271 52.381 0.00 0.00 39.06 4.79
562 575 2.165319 ACTGAAAACCACTAGGCGTC 57.835 50.000 0.00 0.00 39.06 5.19
563 576 2.632987 AACTGAAAACCACTAGGCGT 57.367 45.000 0.00 0.00 39.06 5.68
564 577 2.875933 TGAAACTGAAAACCACTAGGCG 59.124 45.455 0.00 0.00 39.06 5.52
565 578 3.883489 ACTGAAACTGAAAACCACTAGGC 59.117 43.478 0.00 0.00 39.06 3.93
566 579 6.094881 TGAAACTGAAACTGAAAACCACTAGG 59.905 38.462 0.00 0.00 42.21 3.02
567 580 7.065803 TCTGAAACTGAAACTGAAAACCACTAG 59.934 37.037 0.00 0.00 0.00 2.57
568 581 6.882140 TCTGAAACTGAAACTGAAAACCACTA 59.118 34.615 0.00 0.00 0.00 2.74
569 582 5.710099 TCTGAAACTGAAACTGAAAACCACT 59.290 36.000 0.00 0.00 0.00 4.00
595 608 4.630111 TGATTTTGTTGGTGCTGGAATTC 58.370 39.130 0.00 0.00 0.00 2.17
596 609 4.686191 TGATTTTGTTGGTGCTGGAATT 57.314 36.364 0.00 0.00 0.00 2.17
597 610 4.895668 ATGATTTTGTTGGTGCTGGAAT 57.104 36.364 0.00 0.00 0.00 3.01
598 611 4.100653 TCAATGATTTTGTTGGTGCTGGAA 59.899 37.500 0.00 0.00 0.00 3.53
599 612 3.640498 TCAATGATTTTGTTGGTGCTGGA 59.360 39.130 0.00 0.00 0.00 3.86
600 613 3.992643 TCAATGATTTTGTTGGTGCTGG 58.007 40.909 0.00 0.00 0.00 4.85
618 631 7.549134 ACGCATACTGAACTATCTGAATTTCAA 59.451 33.333 0.01 0.00 0.00 2.69
619 632 7.041721 ACGCATACTGAACTATCTGAATTTCA 58.958 34.615 0.00 0.00 0.00 2.69
629 642 4.110482 GGTCGAAACGCATACTGAACTAT 58.890 43.478 0.00 0.00 0.00 2.12
630 643 3.057386 TGGTCGAAACGCATACTGAACTA 60.057 43.478 0.00 0.00 0.00 2.24
643 656 3.430333 TTTCAGCCTTTTGGTCGAAAC 57.570 42.857 0.00 0.00 42.99 2.78
650 663 6.097270 TCCAGATGAATATTTCAGCCTTTTGG 59.903 38.462 2.15 4.11 46.75 3.28
652 665 7.722949 TTCCAGATGAATATTTCAGCCTTTT 57.277 32.000 2.15 0.00 46.75 2.27
754 768 5.588648 TGAAATATTTACCTCTCGGCCAAAG 59.411 40.000 2.24 0.00 0.00 2.77
764 778 8.213518 TCAGCAATCACTGAAATATTTACCTC 57.786 34.615 0.00 0.00 43.59 3.85
782 796 7.538678 GTGACGAGTTTCATTAATTTCAGCAAT 59.461 33.333 0.00 0.00 0.00 3.56
783 797 6.855914 GTGACGAGTTTCATTAATTTCAGCAA 59.144 34.615 0.00 0.00 0.00 3.91
830 848 2.406130 TCGTTTGCGGTTTCGTTCTAT 58.594 42.857 0.00 0.00 38.89 1.98
917 939 2.453812 GGTGGTGGTGGTGGTGGTA 61.454 63.158 0.00 0.00 0.00 3.25
1543 1589 1.077858 CCTCTTGGCTTCCTCCTGC 60.078 63.158 0.00 0.00 0.00 4.85
1851 1900 1.330521 GCACAGAGCAAAGTGAAACGA 59.669 47.619 6.62 0.00 43.23 3.85
1959 2009 1.080569 CAAAGCATGCGAACCCACC 60.081 57.895 13.01 0.00 0.00 4.61
2027 2081 3.011949 TGCTTCCTTTGCGAAATTCAC 57.988 42.857 0.00 0.00 0.00 3.18
2073 2127 1.539388 CCACCGCATGCTCTTTAACAA 59.461 47.619 17.13 0.00 0.00 2.83
2074 2128 1.164411 CCACCGCATGCTCTTTAACA 58.836 50.000 17.13 0.00 0.00 2.41
2075 2129 1.165270 ACCACCGCATGCTCTTTAAC 58.835 50.000 17.13 0.00 0.00 2.01
2078 2141 1.812571 CTAAACCACCGCATGCTCTTT 59.187 47.619 17.13 7.92 0.00 2.52
2128 2196 9.205719 CCTAAACTACTTAGAAAAGAACTCACC 57.794 37.037 0.00 0.00 39.66 4.02
2335 2410 2.496111 CTAGGAGTGTACTAGGAGCGG 58.504 57.143 0.00 0.00 35.42 5.52
2337 2412 2.158579 AGGCTAGGAGTGTACTAGGAGC 60.159 54.545 0.00 4.00 38.64 4.70
2376 2451 3.947196 TGGAAGCAATGATACACCATGAC 59.053 43.478 0.00 0.00 0.00 3.06
2410 2485 0.179094 TTCAAGCGACAGTTGGACGT 60.179 50.000 0.00 0.00 0.00 4.34
2498 2573 3.992427 CCAAGAAGAAACCACTACGTACC 59.008 47.826 0.00 0.00 0.00 3.34
2506 2581 3.243535 CCAAAGAGCCAAGAAGAAACCAC 60.244 47.826 0.00 0.00 0.00 4.16
2512 2587 2.289072 CGAGACCAAAGAGCCAAGAAGA 60.289 50.000 0.00 0.00 0.00 2.87
2527 2603 3.254892 CAGCTTCCTTTTAGACGAGACC 58.745 50.000 0.00 0.00 0.00 3.85
2760 2847 4.785453 GCAGCCGAGACCCCTTGG 62.785 72.222 0.00 0.00 45.23 3.61
2761 2848 3.672295 GAGCAGCCGAGACCCCTTG 62.672 68.421 0.00 0.00 0.00 3.61
2898 3003 2.280119 GCACACAGACGCACAGGA 60.280 61.111 0.00 0.00 0.00 3.86
3054 3168 4.007659 GGTGCTTAAACTAGCTTTGCCTA 58.992 43.478 0.00 0.00 41.76 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.