Multiple sequence alignment - TraesCS3D01G227600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G227600 chr3D 100.000 3947 0 0 1 3947 309687258 309691204 0.000000e+00 7289.0
1 TraesCS3D01G227600 chr3D 88.864 1805 123 31 2074 3844 367358545 367360305 0.000000e+00 2148.0
2 TraesCS3D01G227600 chr3D 94.028 787 47 0 1 787 578244527 578243741 0.000000e+00 1194.0
3 TraesCS3D01G227600 chr3D 93.916 789 47 1 1 789 355420882 355421669 0.000000e+00 1190.0
4 TraesCS3D01G227600 chr3D 100.000 550 0 0 4340 4889 309691597 309692146 0.000000e+00 1016.0
5 TraesCS3D01G227600 chr3D 84.615 468 30 19 890 1322 367356943 367357403 1.260000e-115 427.0
6 TraesCS3D01G227600 chr3D 95.604 91 3 1 1412 1502 329496955 329496866 1.420000e-30 145.0
7 TraesCS3D01G227600 chr3D 87.500 64 3 1 1346 1409 367357407 367357465 8.780000e-08 69.4
8 TraesCS3D01G227600 chr3B 97.633 2155 34 7 1728 3871 411506997 411504849 0.000000e+00 3681.0
9 TraesCS3D01G227600 chr3B 87.139 1765 112 34 2074 3794 479495685 479497378 0.000000e+00 1895.0
10 TraesCS3D01G227600 chr3B 90.347 518 29 13 879 1395 411507987 411507490 0.000000e+00 660.0
11 TraesCS3D01G227600 chr3B 83.186 565 38 21 890 1409 479494580 479495132 9.590000e-127 464.0
12 TraesCS3D01G227600 chr3B 77.895 475 54 33 1509 1944 479495142 479495604 1.050000e-61 248.0
13 TraesCS3D01G227600 chr3B 92.814 167 3 2 1501 1666 411507481 411507323 2.940000e-57 233.0
14 TraesCS3D01G227600 chr3B 95.890 73 2 1 3798 3870 479497411 479497482 3.090000e-22 117.0
15 TraesCS3D01G227600 chr3B 97.222 36 1 0 1696 1731 411507317 411507282 1.470000e-05 62.1
16 TraesCS3D01G227600 chr3A 97.366 2012 40 11 1857 3868 429462588 429464586 0.000000e+00 3410.0
17 TraesCS3D01G227600 chr3A 86.896 1862 131 40 2074 3868 489566759 489568574 0.000000e+00 1982.0
18 TraesCS3D01G227600 chr3A 82.837 571 34 27 890 1408 489565628 489566186 2.070000e-123 453.0
19 TraesCS3D01G227600 chr3A 97.177 248 5 2 1566 1813 429462340 429462585 7.570000e-113 418.0
20 TraesCS3D01G227600 chr3A 91.450 269 4 1 1006 1255 429461628 429461896 7.790000e-93 351.0
21 TraesCS3D01G227600 chr3A 79.469 414 42 26 1568 1944 489566276 489566683 2.260000e-63 254.0
22 TraesCS3D01G227600 chr3A 84.977 213 13 9 793 1002 429461394 429461590 1.070000e-46 198.0
23 TraesCS3D01G227600 chr3A 94.872 78 4 0 1342 1419 429462235 429462312 6.650000e-24 122.0
24 TraesCS3D01G227600 chr3A 87.879 99 8 4 793 890 479098856 479098951 4.000000e-21 113.0
25 TraesCS3D01G227600 chr3A 95.000 40 1 1 907 945 429461598 429461637 1.470000e-05 62.1
26 TraesCS3D01G227600 chr3A 100.000 31 0 0 1499 1529 429462312 429462342 1.900000e-04 58.4
27 TraesCS3D01G227600 chr7D 94.550 789 43 0 1 789 160017254 160016466 0.000000e+00 1219.0
28 TraesCS3D01G227600 chr7D 89.720 107 8 2 1415 1518 561192118 561192224 3.070000e-27 134.0
29 TraesCS3D01G227600 chr7D 89.320 103 10 1 1411 1512 605964345 605964243 1.430000e-25 128.0
30 TraesCS3D01G227600 chr7D 100.000 40 0 0 3908 3947 535854124 535854163 1.890000e-09 75.0
31 TraesCS3D01G227600 chr7D 100.000 39 0 0 3908 3946 575152660 575152698 6.790000e-09 73.1
32 TraesCS3D01G227600 chr7D 100.000 36 0 0 3912 3947 534628761 534628796 3.160000e-07 67.6
33 TraesCS3D01G227600 chr7D 100.000 36 0 0 3912 3947 624774595 624774630 3.160000e-07 67.6
34 TraesCS3D01G227600 chr2D 94.423 789 43 1 1 789 436017748 436016961 0.000000e+00 1212.0
35 TraesCS3D01G227600 chr2D 93.663 789 50 0 1 789 368790174 368789386 0.000000e+00 1181.0
36 TraesCS3D01G227600 chr2D 93.663 789 48 1 1 789 648276865 648276079 0.000000e+00 1179.0
37 TraesCS3D01G227600 chr2D 98.527 543 8 0 4347 4889 32773651 32773109 0.000000e+00 959.0
38 TraesCS3D01G227600 chr2D 92.857 98 6 1 1412 1509 53145816 53145720 1.830000e-29 141.0
39 TraesCS3D01G227600 chr2D 95.402 87 4 0 1417 1503 14895275 14895361 6.600000e-29 139.0
40 TraesCS3D01G227600 chr2D 88.000 100 8 2 793 890 293151766 293151863 1.110000e-21 115.0
41 TraesCS3D01G227600 chr2D 100.000 44 0 0 3904 3947 32773785 32773742 1.130000e-11 82.4
42 TraesCS3D01G227600 chr2D 100.000 35 0 0 3913 3947 630957728 630957694 1.140000e-06 65.8
43 TraesCS3D01G227600 chr1D 94.170 789 45 1 1 789 43028265 43029052 0.000000e+00 1201.0
44 TraesCS3D01G227600 chr1D 91.211 421 33 2 4470 4889 410483467 410483884 1.970000e-158 569.0
45 TraesCS3D01G227600 chr1D 93.427 213 14 0 4677 4889 410473020 410473232 2.840000e-82 316.0
46 TraesCS3D01G227600 chr1D 87.701 187 19 2 1126 1309 460789475 460789660 1.070000e-51 215.0
47 TraesCS3D01G227600 chr1D 87.879 99 10 2 793 890 12421821 12421724 1.110000e-21 115.0
48 TraesCS3D01G227600 chr4D 93.663 789 48 2 1 789 415909686 415910472 0.000000e+00 1179.0
49 TraesCS3D01G227600 chr4D 97.674 86 2 0 1418 1503 7759883 7759968 1.100000e-31 148.0
50 TraesCS3D01G227600 chr4D 86.735 98 11 2 793 890 323601191 323601286 1.860000e-19 108.0
51 TraesCS3D01G227600 chr4D 100.000 41 0 0 3907 3947 82736547 82736587 5.250000e-10 76.8
52 TraesCS3D01G227600 chr6D 93.536 789 50 1 1 789 277042832 277042045 0.000000e+00 1173.0
53 TraesCS3D01G227600 chr6D 89.412 170 17 1 4720 4889 357161843 357161675 3.830000e-51 213.0
54 TraesCS3D01G227600 chr6D 100.000 35 0 0 3913 3947 377173237 377173271 1.140000e-06 65.8
55 TraesCS3D01G227600 chr7A 94.216 536 23 1 4354 4889 162874998 162874471 0.000000e+00 811.0
56 TraesCS3D01G227600 chr7A 85.843 445 47 10 4447 4887 28173124 28172692 4.460000e-125 459.0
57 TraesCS3D01G227600 chrUn 91.463 492 38 2 4399 4889 445057418 445057906 0.000000e+00 673.0
58 TraesCS3D01G227600 chrUn 87.166 187 20 2 1126 1309 8110903 8111088 4.960000e-50 209.0
59 TraesCS3D01G227600 chrUn 87.000 100 9 3 793 890 38444306 38444403 5.170000e-20 110.0
60 TraesCS3D01G227600 chrUn 100.000 41 0 0 3907 3947 152291105 152291065 5.250000e-10 76.8
61 TraesCS3D01G227600 chr1A 85.646 209 23 5 1126 1330 551875146 551875351 3.830000e-51 213.0
62 TraesCS3D01G227600 chr2B 95.402 87 4 0 1417 1503 17023935 17024021 6.600000e-29 139.0
63 TraesCS3D01G227600 chr5D 93.478 92 6 0 1418 1509 30547825 30547734 2.370000e-28 137.0
64 TraesCS3D01G227600 chr5D 92.632 95 6 1 1414 1508 240428039 240428132 8.540000e-28 135.0
65 TraesCS3D01G227600 chr7B 89.888 89 7 1 795 883 54782446 54782360 4.000000e-21 113.0
66 TraesCS3D01G227600 chr7B 87.000 100 9 2 793 890 299250344 299250247 5.170000e-20 110.0
67 TraesCS3D01G227600 chr7B 100.000 28 0 0 903 930 611160525 611160498 9.000000e-03 52.8
68 TraesCS3D01G227600 chr4B 87.755 98 10 1 793 890 216902782 216902687 4.000000e-21 113.0
69 TraesCS3D01G227600 chr1B 87.879 99 9 1 1214 1309 105092976 105093074 4.000000e-21 113.0
70 TraesCS3D01G227600 chr4A 86.735 98 8 2 793 890 682767784 682767876 2.410000e-18 104.0
71 TraesCS3D01G227600 chr6B 76.020 196 40 6 4700 4889 416605576 416605770 1.450000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G227600 chr3D 309687258 309692146 4888 False 4152.500000 7289 100.000000 1 4889 2 chr3D.!!$F2 4888
1 TraesCS3D01G227600 chr3D 578243741 578244527 786 True 1194.000000 1194 94.028000 1 787 1 chr3D.!!$R2 786
2 TraesCS3D01G227600 chr3D 355420882 355421669 787 False 1190.000000 1190 93.916000 1 789 1 chr3D.!!$F1 788
3 TraesCS3D01G227600 chr3D 367356943 367360305 3362 False 881.466667 2148 86.993000 890 3844 3 chr3D.!!$F3 2954
4 TraesCS3D01G227600 chr3B 411504849 411507987 3138 True 1159.025000 3681 94.504000 879 3871 4 chr3B.!!$R1 2992
5 TraesCS3D01G227600 chr3B 479494580 479497482 2902 False 681.000000 1895 86.027500 890 3870 4 chr3B.!!$F1 2980
6 TraesCS3D01G227600 chr3A 489565628 489568574 2946 False 896.333333 1982 83.067333 890 3868 3 chr3A.!!$F3 2978
7 TraesCS3D01G227600 chr3A 429461394 429464586 3192 False 659.928571 3410 94.406000 793 3868 7 chr3A.!!$F2 3075
8 TraesCS3D01G227600 chr7D 160016466 160017254 788 True 1219.000000 1219 94.550000 1 789 1 chr7D.!!$R1 788
9 TraesCS3D01G227600 chr2D 436016961 436017748 787 True 1212.000000 1212 94.423000 1 789 1 chr2D.!!$R3 788
10 TraesCS3D01G227600 chr2D 368789386 368790174 788 True 1181.000000 1181 93.663000 1 789 1 chr2D.!!$R2 788
11 TraesCS3D01G227600 chr2D 648276079 648276865 786 True 1179.000000 1179 93.663000 1 789 1 chr2D.!!$R5 788
12 TraesCS3D01G227600 chr2D 32773109 32773785 676 True 520.700000 959 99.263500 3904 4889 2 chr2D.!!$R6 985
13 TraesCS3D01G227600 chr1D 43028265 43029052 787 False 1201.000000 1201 94.170000 1 789 1 chr1D.!!$F1 788
14 TraesCS3D01G227600 chr4D 415909686 415910472 786 False 1179.000000 1179 93.663000 1 789 1 chr4D.!!$F4 788
15 TraesCS3D01G227600 chr6D 277042045 277042832 787 True 1173.000000 1173 93.536000 1 789 1 chr6D.!!$R1 788
16 TraesCS3D01G227600 chr7A 162874471 162874998 527 True 811.000000 811 94.216000 4354 4889 1 chr7A.!!$R2 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
169 170 0.037326 CAGCAGCTTTACGGACCTCA 60.037 55.000 0.0 0.0 0.0 3.86 F
607 608 0.108585 GGTGTGGGAGTGAAGCTGAA 59.891 55.000 0.0 0.0 0.0 3.02 F
1434 1759 0.178970 GCTACTCCCTCCGTCCCATA 60.179 60.000 0.0 0.0 0.0 2.74 F
2178 3198 0.037882 ACACAGCCATCGTCACTCTG 60.038 55.000 0.0 0.0 0.0 3.35 F
3833 5003 2.202932 ACGCATCCCATCGCTGTC 60.203 61.111 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1484 1809 0.179009 CGTACTCCCTCCGTCCCATA 60.179 60.000 0.00 0.00 0.00 2.74 R
1490 1815 0.179936 CTAGGACGTACTCCCTCCGT 59.820 60.000 1.79 0.00 40.53 4.69 R
3018 4108 1.089112 TAGCTACTCGCGTGCTGTTA 58.911 50.000 21.30 9.91 45.59 2.41 R
3875 5045 0.037303 AAGTGTGCTGGGGAGATGTG 59.963 55.000 0.00 0.00 0.00 3.21 R
4743 5913 1.008881 GCAGACGACTGTGTCACGA 60.009 57.895 16.02 0.00 45.04 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 1.975327 CGCCTGTTCCTCTCCTTCA 59.025 57.895 0.00 0.00 0.00 3.02
83 84 1.487142 TCTCCTTCAACACCACCGAAA 59.513 47.619 0.00 0.00 0.00 3.46
106 107 2.371841 GGCCACCAAAGGGAAAGAAAAT 59.628 45.455 0.00 0.00 38.05 1.82
121 122 7.777440 GGGAAAGAAAATAGATCACCTCTTCAT 59.223 37.037 0.00 0.00 35.28 2.57
126 127 6.678568 AAATAGATCACCTCTTCATCCGAT 57.321 37.500 0.00 0.00 35.28 4.18
169 170 0.037326 CAGCAGCTTTACGGACCTCA 60.037 55.000 0.00 0.00 0.00 3.86
277 278 1.367102 GACACCCCCGTACGACAAA 59.633 57.895 18.76 0.00 0.00 2.83
312 313 0.532862 AACCAGAACTGTCAGCCACG 60.533 55.000 0.00 0.00 0.00 4.94
421 422 0.176449 CTGCTCCACCATGACATCGA 59.824 55.000 0.00 0.00 0.00 3.59
427 428 2.501316 TCCACCATGACATCGAAGACAT 59.499 45.455 0.00 0.00 42.51 3.06
443 444 4.015406 ATCGCCACAGCAACGGGA 62.015 61.111 0.00 0.00 39.83 5.14
456 457 1.048601 AACGGGAACAGAGCAGAAGA 58.951 50.000 0.00 0.00 0.00 2.87
461 462 2.345876 GGAACAGAGCAGAAGAAGAGC 58.654 52.381 0.00 0.00 0.00 4.09
477 478 0.326264 GAGCCACACCTGATGGAGTT 59.674 55.000 0.00 0.00 39.87 3.01
552 553 0.955428 ATCGGCAAACACACGATGCT 60.955 50.000 0.00 0.00 44.66 3.79
560 561 4.613622 GCAAACACACGATGCTATCAACTT 60.614 41.667 0.00 0.00 37.12 2.66
607 608 0.108585 GGTGTGGGAGTGAAGCTGAA 59.891 55.000 0.00 0.00 0.00 3.02
609 610 1.131638 TGTGGGAGTGAAGCTGAAGT 58.868 50.000 0.00 0.00 0.00 3.01
687 689 9.449719 CTACAAATCCAAAACCTAACTACAGAT 57.550 33.333 0.00 0.00 0.00 2.90
789 791 2.403252 GAGGAAGAAAATCGCCTCCA 57.597 50.000 0.00 0.00 37.08 3.86
790 792 2.010497 GAGGAAGAAAATCGCCTCCAC 58.990 52.381 0.00 0.00 37.08 4.02
791 793 1.351017 AGGAAGAAAATCGCCTCCACA 59.649 47.619 0.00 0.00 0.00 4.17
797 799 1.098050 AAATCGCCTCCACATCTTGC 58.902 50.000 0.00 0.00 0.00 4.01
798 800 0.749454 AATCGCCTCCACATCTTGCC 60.749 55.000 0.00 0.00 0.00 4.52
801 803 1.452833 GCCTCCACATCTTGCCCTC 60.453 63.158 0.00 0.00 0.00 4.30
870 872 6.545567 ACATCCATCATATTCCACAGCAATA 58.454 36.000 0.00 0.00 0.00 1.90
871 873 7.179966 ACATCCATCATATTCCACAGCAATAT 58.820 34.615 0.00 0.00 0.00 1.28
872 874 7.338703 ACATCCATCATATTCCACAGCAATATC 59.661 37.037 0.00 0.00 0.00 1.63
873 875 6.182627 TCCATCATATTCCACAGCAATATCC 58.817 40.000 0.00 0.00 0.00 2.59
874 876 5.359009 CCATCATATTCCACAGCAATATCCC 59.641 44.000 0.00 0.00 0.00 3.85
876 878 6.950860 TCATATTCCACAGCAATATCCCTA 57.049 37.500 0.00 0.00 0.00 3.53
996 998 2.701006 CGCGTGCGGTCCAATAAG 59.299 61.111 6.30 0.00 35.56 1.73
1195 1268 4.436998 AGCCTGTCGCAGTACGCC 62.437 66.667 6.19 0.00 43.23 5.68
1255 1328 2.277404 GTCCTCCCGCTCTCCTCT 59.723 66.667 0.00 0.00 0.00 3.69
1288 1361 3.997400 CTCCCTCGCCTCCGTCTCA 62.997 68.421 0.00 0.00 35.54 3.27
1402 1727 5.393027 CGTTTATTCCCCTTCAGTTTCCATG 60.393 44.000 0.00 0.00 0.00 3.66
1418 1743 1.613925 CCATGCGCCTCTTAGTAGCTA 59.386 52.381 4.18 0.00 0.00 3.32
1419 1744 2.608261 CCATGCGCCTCTTAGTAGCTAC 60.608 54.545 16.43 16.43 0.00 3.58
1420 1745 2.054232 TGCGCCTCTTAGTAGCTACT 57.946 50.000 28.50 28.50 40.24 2.57
1421 1746 1.948145 TGCGCCTCTTAGTAGCTACTC 59.052 52.381 29.28 13.17 37.73 2.59
1422 1747 1.267533 GCGCCTCTTAGTAGCTACTCC 59.732 57.143 29.28 11.06 37.73 3.85
1423 1748 1.881324 CGCCTCTTAGTAGCTACTCCC 59.119 57.143 29.28 11.38 37.73 4.30
1424 1749 2.487625 CGCCTCTTAGTAGCTACTCCCT 60.488 54.545 29.28 9.12 37.73 4.20
1425 1750 3.151554 GCCTCTTAGTAGCTACTCCCTC 58.848 54.545 29.28 11.45 37.73 4.30
1426 1751 3.758425 CCTCTTAGTAGCTACTCCCTCC 58.242 54.545 29.28 0.00 37.73 4.30
1427 1752 3.404899 CTCTTAGTAGCTACTCCCTCCG 58.595 54.545 29.28 12.36 37.73 4.63
1428 1753 2.776536 TCTTAGTAGCTACTCCCTCCGT 59.223 50.000 29.28 6.46 37.73 4.69
1429 1754 2.926778 TAGTAGCTACTCCCTCCGTC 57.073 55.000 29.28 0.00 37.73 4.79
1430 1755 0.183252 AGTAGCTACTCCCTCCGTCC 59.817 60.000 20.95 0.00 0.00 4.79
1431 1756 0.822944 GTAGCTACTCCCTCCGTCCC 60.823 65.000 16.88 0.00 0.00 4.46
1432 1757 1.284111 TAGCTACTCCCTCCGTCCCA 61.284 60.000 0.00 0.00 0.00 4.37
1433 1758 1.457831 GCTACTCCCTCCGTCCCAT 60.458 63.158 0.00 0.00 0.00 4.00
1434 1759 0.178970 GCTACTCCCTCCGTCCCATA 60.179 60.000 0.00 0.00 0.00 2.74
1435 1760 1.756690 GCTACTCCCTCCGTCCCATAA 60.757 57.143 0.00 0.00 0.00 1.90
1436 1761 2.890814 CTACTCCCTCCGTCCCATAAT 58.109 52.381 0.00 0.00 0.00 1.28
1437 1762 3.816842 GCTACTCCCTCCGTCCCATAATA 60.817 52.174 0.00 0.00 0.00 0.98
1438 1763 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
1439 1764 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
1440 1765 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
1441 1766 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
1442 1767 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
1443 1768 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
1444 1769 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
1445 1770 4.466370 CCTCCGTCCCATAATATAAGAGCA 59.534 45.833 0.00 0.00 0.00 4.26
1446 1771 5.129485 CCTCCGTCCCATAATATAAGAGCAT 59.871 44.000 0.00 0.00 0.00 3.79
1447 1772 6.352222 CCTCCGTCCCATAATATAAGAGCATT 60.352 42.308 0.00 0.00 0.00 3.56
1448 1773 7.016153 TCCGTCCCATAATATAAGAGCATTT 57.984 36.000 0.00 0.00 0.00 2.32
1449 1774 7.458397 TCCGTCCCATAATATAAGAGCATTTT 58.542 34.615 0.00 0.00 0.00 1.82
1450 1775 7.942341 TCCGTCCCATAATATAAGAGCATTTTT 59.058 33.333 0.00 0.00 0.00 1.94
1451 1776 8.023128 CCGTCCCATAATATAAGAGCATTTTTG 58.977 37.037 0.00 0.00 0.00 2.44
1452 1777 8.783093 CGTCCCATAATATAAGAGCATTTTTGA 58.217 33.333 0.00 0.00 0.00 2.69
1453 1778 9.899226 GTCCCATAATATAAGAGCATTTTTGAC 57.101 33.333 0.00 0.00 0.00 3.18
1454 1779 9.639563 TCCCATAATATAAGAGCATTTTTGACA 57.360 29.630 0.00 0.00 0.00 3.58
1455 1780 9.683069 CCCATAATATAAGAGCATTTTTGACAC 57.317 33.333 0.00 0.00 0.00 3.67
1463 1788 7.426929 AAGAGCATTTTTGACACTAGTGTAG 57.573 36.000 27.98 12.67 45.05 2.74
1464 1789 6.525629 AGAGCATTTTTGACACTAGTGTAGT 58.474 36.000 27.98 6.32 45.05 2.73
1465 1790 7.667557 AGAGCATTTTTGACACTAGTGTAGTA 58.332 34.615 27.98 14.71 45.05 1.82
1466 1791 8.314751 AGAGCATTTTTGACACTAGTGTAGTAT 58.685 33.333 27.98 13.96 45.05 2.12
1467 1792 9.582431 GAGCATTTTTGACACTAGTGTAGTATA 57.418 33.333 27.98 14.06 45.05 1.47
1468 1793 9.938280 AGCATTTTTGACACTAGTGTAGTATAA 57.062 29.630 27.98 17.60 45.05 0.98
1494 1819 8.472007 AAAATGCTTTTATATTATGGGACGGA 57.528 30.769 0.00 0.00 0.00 4.69
1495 1820 7.687941 AATGCTTTTATATTATGGGACGGAG 57.312 36.000 0.00 0.00 0.00 4.63
1496 1821 5.556915 TGCTTTTATATTATGGGACGGAGG 58.443 41.667 0.00 0.00 0.00 4.30
1497 1822 4.941873 GCTTTTATATTATGGGACGGAGGG 59.058 45.833 0.00 0.00 0.00 4.30
1564 1890 1.519246 CATTCCTCGGCTCTGCTCA 59.481 57.895 0.00 0.00 0.00 4.26
1685 2045 8.887264 TTTATTCCATTGGCTTAGGACTTTAA 57.113 30.769 0.00 0.00 0.00 1.52
1686 2046 8.519799 TTATTCCATTGGCTTAGGACTTTAAG 57.480 34.615 0.00 0.00 34.48 1.85
1687 2047 5.514500 TCCATTGGCTTAGGACTTTAAGT 57.486 39.130 0.00 0.00 33.99 2.24
1688 2048 6.630203 TCCATTGGCTTAGGACTTTAAGTA 57.370 37.500 0.00 0.00 33.99 2.24
1689 2049 6.412214 TCCATTGGCTTAGGACTTTAAGTAC 58.588 40.000 0.00 0.00 33.99 2.73
1690 2050 6.214819 TCCATTGGCTTAGGACTTTAAGTACT 59.785 38.462 14.81 14.81 43.19 2.73
1691 2051 7.400915 TCCATTGGCTTAGGACTTTAAGTACTA 59.599 37.037 12.66 12.66 37.71 1.82
1692 2052 7.711339 CCATTGGCTTAGGACTTTAAGTACTAG 59.289 40.741 15.67 11.60 42.26 2.57
1698 2058 8.404765 GCTTAGGACTTTAAGTACTAGTACCTG 58.595 40.741 25.97 15.12 42.26 4.00
1829 2814 9.771915 GTACTAGTATCTTCTTGTGTCAACTAC 57.228 37.037 5.75 0.00 0.00 2.73
2005 3011 8.023706 CAGTTTACTTGGAAGAAGAAATTAGGC 58.976 37.037 0.00 0.00 0.00 3.93
2007 3013 8.577296 GTTTACTTGGAAGAAGAAATTAGGCTT 58.423 33.333 0.00 0.00 0.00 4.35
2008 3014 6.581171 ACTTGGAAGAAGAAATTAGGCTTG 57.419 37.500 0.00 0.00 0.00 4.01
2178 3198 0.037882 ACACAGCCATCGTCACTCTG 60.038 55.000 0.00 0.00 0.00 3.35
2487 3507 2.969157 CAGCGTCTCATACTGGCTG 58.031 57.895 0.00 0.00 44.19 4.85
3007 4090 3.071479 TCGGTTTGGTAGTTGATTCTGC 58.929 45.455 0.00 0.00 0.00 4.26
3018 4108 7.665559 TGGTAGTTGATTCTGCATTTCTTAACT 59.334 33.333 0.00 0.00 0.00 2.24
3332 4432 5.126384 AGTTCTCCATCGTTTCCAACAAAAA 59.874 36.000 0.00 0.00 0.00 1.94
3616 4745 3.075148 GGTTTGCTCTTCTGAACCTACC 58.925 50.000 0.00 0.00 38.74 3.18
3833 5003 2.202932 ACGCATCCCATCGCTGTC 60.203 61.111 0.00 0.00 0.00 3.51
3878 5048 9.747898 AATGTAATTGTAGAGGGAATTAACACA 57.252 29.630 0.00 0.00 33.44 3.72
3879 5049 9.920946 ATGTAATTGTAGAGGGAATTAACACAT 57.079 29.630 0.00 0.00 0.00 3.21
3880 5050 9.391006 TGTAATTGTAGAGGGAATTAACACATC 57.609 33.333 0.00 0.00 0.00 3.06
3881 5051 9.614792 GTAATTGTAGAGGGAATTAACACATCT 57.385 33.333 0.00 0.00 0.00 2.90
3882 5052 8.738645 AATTGTAGAGGGAATTAACACATCTC 57.261 34.615 0.00 0.00 0.00 2.75
3883 5053 6.235231 TGTAGAGGGAATTAACACATCTCC 57.765 41.667 0.00 0.00 0.00 3.71
3884 5054 4.779993 AGAGGGAATTAACACATCTCCC 57.220 45.455 0.00 0.00 45.35 4.30
3885 5055 3.459969 AGAGGGAATTAACACATCTCCCC 59.540 47.826 1.76 0.00 46.05 4.81
3886 5056 3.197983 AGGGAATTAACACATCTCCCCA 58.802 45.455 1.76 0.00 46.05 4.96
3887 5057 3.203040 AGGGAATTAACACATCTCCCCAG 59.797 47.826 1.76 0.00 46.05 4.45
3888 5058 2.952310 GGAATTAACACATCTCCCCAGC 59.048 50.000 0.00 0.00 0.00 4.85
3889 5059 3.620488 GAATTAACACATCTCCCCAGCA 58.380 45.455 0.00 0.00 0.00 4.41
3890 5060 2.489938 TTAACACATCTCCCCAGCAC 57.510 50.000 0.00 0.00 0.00 4.40
3891 5061 1.357137 TAACACATCTCCCCAGCACA 58.643 50.000 0.00 0.00 0.00 4.57
3892 5062 0.250901 AACACATCTCCCCAGCACAC 60.251 55.000 0.00 0.00 0.00 3.82
3893 5063 1.130054 ACACATCTCCCCAGCACACT 61.130 55.000 0.00 0.00 0.00 3.55
3894 5064 0.037303 CACATCTCCCCAGCACACTT 59.963 55.000 0.00 0.00 0.00 3.16
3895 5065 0.773644 ACATCTCCCCAGCACACTTT 59.226 50.000 0.00 0.00 0.00 2.66
3896 5066 1.271597 ACATCTCCCCAGCACACTTTC 60.272 52.381 0.00 0.00 0.00 2.62
3897 5067 0.329596 ATCTCCCCAGCACACTTTCC 59.670 55.000 0.00 0.00 0.00 3.13
3898 5068 1.303643 CTCCCCAGCACACTTTCCC 60.304 63.158 0.00 0.00 0.00 3.97
3899 5069 2.283173 CCCCAGCACACTTTCCCC 60.283 66.667 0.00 0.00 0.00 4.81
3900 5070 2.845345 CCCCAGCACACTTTCCCCT 61.845 63.158 0.00 0.00 0.00 4.79
3901 5071 1.153756 CCCAGCACACTTTCCCCTT 59.846 57.895 0.00 0.00 0.00 3.95
3902 5072 0.895559 CCCAGCACACTTTCCCCTTC 60.896 60.000 0.00 0.00 0.00 3.46
4511 5681 2.932234 CGCAGGAGGAGTTGGTCGT 61.932 63.158 0.00 0.00 0.00 4.34
4743 5913 2.671070 CGATCTGGGCTGTTGGGT 59.329 61.111 0.00 0.00 0.00 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 6.570378 GCGCCAGTATTTTGCATAGGATTATT 60.570 38.462 0.00 0.00 0.00 1.40
83 84 1.530655 CTTTCCCTTTGGTGGCCGT 60.531 57.895 0.00 0.00 0.00 5.68
106 107 4.991776 AGATCGGATGAAGAGGTGATCTA 58.008 43.478 0.00 0.00 40.39 1.98
126 127 3.889044 GATGGAGCCGCGTCGAGA 61.889 66.667 4.92 0.00 0.00 4.04
277 278 0.602060 GGTTTCCTCCTTCGACGTCT 59.398 55.000 14.70 0.00 0.00 4.18
312 313 1.358759 CGTGCTGGGTTTGTGGTTC 59.641 57.895 0.00 0.00 0.00 3.62
421 422 1.568612 CGTTGCTGTGGCGATGTCTT 61.569 55.000 0.00 0.00 42.25 3.01
427 428 4.243008 TTCCCGTTGCTGTGGCGA 62.243 61.111 0.00 0.00 42.25 5.54
443 444 1.696336 TGGCTCTTCTTCTGCTCTGTT 59.304 47.619 0.00 0.00 0.00 3.16
456 457 0.617413 CTCCATCAGGTGTGGCTCTT 59.383 55.000 0.00 0.00 36.66 2.85
461 462 0.962356 GGCAACTCCATCAGGTGTGG 60.962 60.000 0.00 0.00 42.62 4.17
552 553 0.524816 GCGGCGTCTCGAAGTTGATA 60.525 55.000 9.37 0.00 0.00 2.15
560 561 3.699955 CTTCATGGCGGCGTCTCGA 62.700 63.158 14.51 6.15 0.00 4.04
630 631 3.897122 GTTGGGGTGGTGGGAGCA 61.897 66.667 0.00 0.00 0.00 4.26
687 689 2.999063 GGGACCCCGTTCCTTCGA 60.999 66.667 0.00 0.00 35.76 3.71
789 791 2.629617 CAAAACTTGGAGGGCAAGATGT 59.370 45.455 0.00 0.00 34.08 3.06
790 792 2.629617 ACAAAACTTGGAGGGCAAGATG 59.370 45.455 0.00 0.00 34.08 2.90
791 793 2.962859 ACAAAACTTGGAGGGCAAGAT 58.037 42.857 0.00 0.00 34.08 2.40
826 828 8.206867 TGGATGTATTATTGAGTCTTGAGGAAG 58.793 37.037 0.00 0.00 0.00 3.46
827 829 8.089625 TGGATGTATTATTGAGTCTTGAGGAA 57.910 34.615 0.00 0.00 0.00 3.36
828 830 7.675161 TGGATGTATTATTGAGTCTTGAGGA 57.325 36.000 0.00 0.00 0.00 3.71
829 831 8.152898 TGATGGATGTATTATTGAGTCTTGAGG 58.847 37.037 0.00 0.00 0.00 3.86
830 832 9.722184 ATGATGGATGTATTATTGAGTCTTGAG 57.278 33.333 0.00 0.00 0.00 3.02
864 866 7.398904 GGTTAGAAGAGAGATAGGGATATTGCT 59.601 40.741 0.00 0.00 0.00 3.91
865 867 7.552459 GGTTAGAAGAGAGATAGGGATATTGC 58.448 42.308 0.00 0.00 0.00 3.56
870 872 5.163077 TGACGGTTAGAAGAGAGATAGGGAT 60.163 44.000 0.00 0.00 0.00 3.85
871 873 4.165565 TGACGGTTAGAAGAGAGATAGGGA 59.834 45.833 0.00 0.00 0.00 4.20
872 874 4.276431 GTGACGGTTAGAAGAGAGATAGGG 59.724 50.000 0.00 0.00 0.00 3.53
873 875 4.024725 CGTGACGGTTAGAAGAGAGATAGG 60.025 50.000 0.00 0.00 0.00 2.57
874 876 4.024725 CCGTGACGGTTAGAAGAGAGATAG 60.025 50.000 17.28 0.00 42.73 2.08
876 878 2.683867 CCGTGACGGTTAGAAGAGAGAT 59.316 50.000 17.28 0.00 42.73 2.75
1097 1155 3.003173 CGCCTCCTGGTCCTTCCA 61.003 66.667 0.00 0.00 45.01 3.53
1402 1727 1.267533 GGAGTAGCTACTAAGAGGCGC 59.732 57.143 26.11 10.98 36.50 6.53
1418 1743 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
1419 1744 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
1420 1745 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
1421 1746 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
1422 1747 4.466370 TGCTCTTATATTATGGGACGGAGG 59.534 45.833 0.00 0.00 0.00 4.30
1423 1748 5.661056 TGCTCTTATATTATGGGACGGAG 57.339 43.478 0.00 0.00 0.00 4.63
1424 1749 6.620877 AATGCTCTTATATTATGGGACGGA 57.379 37.500 0.00 0.00 0.00 4.69
1425 1750 7.687941 AAAATGCTCTTATATTATGGGACGG 57.312 36.000 0.00 0.00 0.00 4.79
1426 1751 8.783093 TCAAAAATGCTCTTATATTATGGGACG 58.217 33.333 0.00 0.00 0.00 4.79
1427 1752 9.899226 GTCAAAAATGCTCTTATATTATGGGAC 57.101 33.333 0.00 0.00 0.00 4.46
1428 1753 9.639563 TGTCAAAAATGCTCTTATATTATGGGA 57.360 29.630 0.00 0.00 0.00 4.37
1429 1754 9.683069 GTGTCAAAAATGCTCTTATATTATGGG 57.317 33.333 0.00 0.00 0.00 4.00
1435 1760 9.672673 ACACTAGTGTCAAAAATGCTCTTATAT 57.327 29.630 22.95 0.00 40.24 0.86
1437 1762 7.986085 ACACTAGTGTCAAAAATGCTCTTAT 57.014 32.000 22.95 0.00 40.24 1.73
1438 1763 8.148351 ACTACACTAGTGTCAAAAATGCTCTTA 58.852 33.333 31.11 8.36 43.74 2.10
1439 1764 6.992715 ACTACACTAGTGTCAAAAATGCTCTT 59.007 34.615 31.11 4.99 43.74 2.85
1440 1765 6.525629 ACTACACTAGTGTCAAAAATGCTCT 58.474 36.000 31.11 5.44 43.74 4.09
1441 1766 6.787085 ACTACACTAGTGTCAAAAATGCTC 57.213 37.500 31.11 0.00 43.74 4.26
1442 1767 9.938280 TTATACTACACTAGTGTCAAAAATGCT 57.062 29.630 31.11 6.17 43.74 3.79
1470 1795 7.176690 CCTCCGTCCCATAATATAAAAGCATTT 59.823 37.037 0.00 0.00 42.41 2.32
1471 1796 6.659242 CCTCCGTCCCATAATATAAAAGCATT 59.341 38.462 0.00 0.00 0.00 3.56
1472 1797 6.180472 CCTCCGTCCCATAATATAAAAGCAT 58.820 40.000 0.00 0.00 0.00 3.79
1473 1798 5.514136 CCCTCCGTCCCATAATATAAAAGCA 60.514 44.000 0.00 0.00 0.00 3.91
1474 1799 4.941873 CCCTCCGTCCCATAATATAAAAGC 59.058 45.833 0.00 0.00 0.00 3.51
1475 1800 6.013639 ACTCCCTCCGTCCCATAATATAAAAG 60.014 42.308 0.00 0.00 0.00 2.27
1476 1801 5.847817 ACTCCCTCCGTCCCATAATATAAAA 59.152 40.000 0.00 0.00 0.00 1.52
1477 1802 5.408824 ACTCCCTCCGTCCCATAATATAAA 58.591 41.667 0.00 0.00 0.00 1.40
1478 1803 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
1479 1804 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
1480 1805 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
1481 1806 3.771216 GTACTCCCTCCGTCCCATAATA 58.229 50.000 0.00 0.00 0.00 0.98
1482 1807 2.606378 GTACTCCCTCCGTCCCATAAT 58.394 52.381 0.00 0.00 0.00 1.28
1483 1808 1.751733 CGTACTCCCTCCGTCCCATAA 60.752 57.143 0.00 0.00 0.00 1.90
1484 1809 0.179009 CGTACTCCCTCCGTCCCATA 60.179 60.000 0.00 0.00 0.00 2.74
1485 1810 1.455217 CGTACTCCCTCCGTCCCAT 60.455 63.158 0.00 0.00 0.00 4.00
1486 1811 2.044650 CGTACTCCCTCCGTCCCA 60.045 66.667 0.00 0.00 0.00 4.37
1487 1812 2.044551 ACGTACTCCCTCCGTCCC 60.045 66.667 0.00 0.00 0.00 4.46
1488 1813 3.507290 GACGTACTCCCTCCGTCC 58.493 66.667 0.00 0.00 43.77 4.79
1490 1815 0.179936 CTAGGACGTACTCCCTCCGT 59.820 60.000 1.79 0.00 40.53 4.69
1491 1816 0.467384 TCTAGGACGTACTCCCTCCG 59.533 60.000 1.79 0.00 40.53 4.63
1492 1817 1.211457 TGTCTAGGACGTACTCCCTCC 59.789 57.143 1.79 0.00 40.53 4.30
1493 1818 2.706339 TGTCTAGGACGTACTCCCTC 57.294 55.000 1.79 0.00 40.53 4.30
1494 1819 2.778850 AGATGTCTAGGACGTACTCCCT 59.221 50.000 1.79 0.00 40.53 4.20
1495 1820 3.211718 AGATGTCTAGGACGTACTCCC 57.788 52.381 1.79 0.00 40.53 4.30
1496 1821 3.747529 GCTAGATGTCTAGGACGTACTCC 59.252 52.174 1.79 0.00 44.63 3.85
1497 1822 3.747529 GGCTAGATGTCTAGGACGTACTC 59.252 52.174 1.79 0.00 44.63 2.59
1564 1890 2.632377 CTAAGAACACGCACCATGGAT 58.368 47.619 21.47 0.00 0.00 3.41
1685 2045 2.049888 GGGACGCAGGTACTAGTACT 57.950 55.000 27.71 14.14 36.02 2.73
1829 2814 2.230025 CCTGAGGTGTCACACTGTCTAG 59.770 54.545 8.12 5.82 34.40 2.43
1957 2963 5.626142 TGACTTTTGCTAGTGGTGGAAATA 58.374 37.500 0.00 0.00 0.00 1.40
2005 3011 4.119862 CGTGGAGGTAACCATCATACAAG 58.880 47.826 0.00 0.00 42.17 3.16
2007 3013 2.432874 CCGTGGAGGTAACCATCATACA 59.567 50.000 0.00 0.00 42.17 2.29
2008 3014 2.224209 CCCGTGGAGGTAACCATCATAC 60.224 54.545 0.00 0.00 42.17 2.39
2487 3507 2.742372 ACGAGCATGGCCACGTTC 60.742 61.111 8.16 6.58 38.39 3.95
2509 3529 1.662629 GGAGCTCGACATCACAATGTG 59.337 52.381 7.12 7.12 46.20 3.21
2880 3947 2.434658 AATGTGACGCTCGTGAGGCA 62.435 55.000 0.00 0.00 0.00 4.75
3007 4090 4.081761 CGCGTGCTGTTAGTTAAGAAATG 58.918 43.478 0.00 0.00 0.00 2.32
3018 4108 1.089112 TAGCTACTCGCGTGCTGTTA 58.911 50.000 21.30 9.91 45.59 2.41
3332 4432 7.173907 TGTTAGTAACAAGAAGAGTAGCTACGT 59.826 37.037 17.99 7.09 38.72 3.57
3616 4745 6.999627 CGCGTATGATTTTTATAGGTGTAACG 59.000 38.462 0.00 0.00 38.12 3.18
3833 5003 4.747108 ACATTGTCACTTGAGAGAGAAACG 59.253 41.667 0.00 0.00 0.00 3.60
3868 5038 3.378427 GTGCTGGGGAGATGTGTTAATTC 59.622 47.826 0.00 0.00 0.00 2.17
3869 5039 3.245229 TGTGCTGGGGAGATGTGTTAATT 60.245 43.478 0.00 0.00 0.00 1.40
3871 5041 1.702401 TGTGCTGGGGAGATGTGTTAA 59.298 47.619 0.00 0.00 0.00 2.01
3872 5042 1.003118 GTGTGCTGGGGAGATGTGTTA 59.997 52.381 0.00 0.00 0.00 2.41
3873 5043 0.250901 GTGTGCTGGGGAGATGTGTT 60.251 55.000 0.00 0.00 0.00 3.32
3874 5044 1.130054 AGTGTGCTGGGGAGATGTGT 61.130 55.000 0.00 0.00 0.00 3.72
3875 5045 0.037303 AAGTGTGCTGGGGAGATGTG 59.963 55.000 0.00 0.00 0.00 3.21
3876 5046 0.773644 AAAGTGTGCTGGGGAGATGT 59.226 50.000 0.00 0.00 0.00 3.06
3877 5047 1.457346 GAAAGTGTGCTGGGGAGATG 58.543 55.000 0.00 0.00 0.00 2.90
3878 5048 0.329596 GGAAAGTGTGCTGGGGAGAT 59.670 55.000 0.00 0.00 0.00 2.75
3879 5049 1.761174 GGAAAGTGTGCTGGGGAGA 59.239 57.895 0.00 0.00 0.00 3.71
3880 5050 1.303643 GGGAAAGTGTGCTGGGGAG 60.304 63.158 0.00 0.00 0.00 4.30
3881 5051 2.840753 GGGGAAAGTGTGCTGGGGA 61.841 63.158 0.00 0.00 0.00 4.81
3882 5052 2.283173 GGGGAAAGTGTGCTGGGG 60.283 66.667 0.00 0.00 0.00 4.96
3883 5053 0.895559 GAAGGGGAAAGTGTGCTGGG 60.896 60.000 0.00 0.00 0.00 4.45
3884 5054 0.895559 GGAAGGGGAAAGTGTGCTGG 60.896 60.000 0.00 0.00 0.00 4.85
3885 5055 0.111253 AGGAAGGGGAAAGTGTGCTG 59.889 55.000 0.00 0.00 0.00 4.41
3886 5056 1.351350 GTAGGAAGGGGAAAGTGTGCT 59.649 52.381 0.00 0.00 0.00 4.40
3887 5057 1.613520 GGTAGGAAGGGGAAAGTGTGC 60.614 57.143 0.00 0.00 0.00 4.57
3888 5058 1.985895 AGGTAGGAAGGGGAAAGTGTG 59.014 52.381 0.00 0.00 0.00 3.82
3889 5059 2.157989 AGAGGTAGGAAGGGGAAAGTGT 60.158 50.000 0.00 0.00 0.00 3.55
3890 5060 2.502130 GAGAGGTAGGAAGGGGAAAGTG 59.498 54.545 0.00 0.00 0.00 3.16
3891 5061 2.835389 GAGAGGTAGGAAGGGGAAAGT 58.165 52.381 0.00 0.00 0.00 2.66
3892 5062 1.757699 CGAGAGGTAGGAAGGGGAAAG 59.242 57.143 0.00 0.00 0.00 2.62
3893 5063 1.861982 CGAGAGGTAGGAAGGGGAAA 58.138 55.000 0.00 0.00 0.00 3.13
3894 5064 0.686769 GCGAGAGGTAGGAAGGGGAA 60.687 60.000 0.00 0.00 0.00 3.97
3895 5065 1.076192 GCGAGAGGTAGGAAGGGGA 60.076 63.158 0.00 0.00 0.00 4.81
3896 5066 2.134933 GGCGAGAGGTAGGAAGGGG 61.135 68.421 0.00 0.00 0.00 4.79
3897 5067 2.134933 GGGCGAGAGGTAGGAAGGG 61.135 68.421 0.00 0.00 0.00 3.95
3898 5068 2.134933 GGGGCGAGAGGTAGGAAGG 61.135 68.421 0.00 0.00 0.00 3.46
3899 5069 2.134933 GGGGGCGAGAGGTAGGAAG 61.135 68.421 0.00 0.00 0.00 3.46
3900 5070 2.042230 GGGGGCGAGAGGTAGGAA 60.042 66.667 0.00 0.00 0.00 3.36
3901 5071 4.517934 CGGGGGCGAGAGGTAGGA 62.518 72.222 0.00 0.00 0.00 2.94
4743 5913 1.008881 GCAGACGACTGTGTCACGA 60.009 57.895 16.02 0.00 45.04 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.