Multiple sequence alignment - TraesCS3D01G225900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G225900 chr3D 100.000 3990 0 0 1 3990 307797229 307793240 0.000000e+00 7369.0
1 TraesCS3D01G225900 chr3D 95.406 283 13 0 3708 3990 292811100 292811382 6.080000e-123 451.0
2 TraesCS3D01G225900 chr3D 94.718 284 14 1 3708 3990 147872357 147872074 1.320000e-119 440.0
3 TraesCS3D01G225900 chr3D 89.007 282 28 3 3708 3988 352100303 352100582 2.950000e-91 346.0
4 TraesCS3D01G225900 chr3D 75.149 503 119 5 1053 1552 307880032 307880531 8.620000e-57 231.0
5 TraesCS3D01G225900 chr3D 76.901 355 81 1 2047 2400 307881620 307881974 2.430000e-47 200.0
6 TraesCS3D01G225900 chr3A 95.441 1623 58 6 1595 3205 427092218 427090600 0.000000e+00 2573.0
7 TraesCS3D01G225900 chr3A 93.876 1094 46 9 515 1593 427093363 427092276 0.000000e+00 1629.0
8 TraesCS3D01G225900 chr3A 84.926 471 50 11 1 464 427095549 427095093 1.310000e-124 457.0
9 TraesCS3D01G225900 chr3A 93.617 47 3 0 484 530 427095091 427095045 1.990000e-08 71.3
10 TraesCS3D01G225900 chr3B 95.749 1435 53 6 1620 3051 413970102 413971531 0.000000e+00 2305.0
11 TraesCS3D01G225900 chr3B 92.698 1260 64 10 304 1551 413968841 413970084 0.000000e+00 1792.0
12 TraesCS3D01G225900 chr3B 92.553 282 12 4 3255 3527 413971638 413971919 2.890000e-106 396.0
13 TraesCS3D01G225900 chr3B 91.636 275 21 1 1 273 413968566 413968840 2.910000e-101 379.0
14 TraesCS3D01G225900 chr3B 95.028 181 7 2 3528 3707 413972566 413972745 2.350000e-72 283.0
15 TraesCS3D01G225900 chr3B 76.541 503 112 6 1053 1552 413865977 413865478 1.830000e-68 270.0
16 TraesCS3D01G225900 chr3B 95.082 122 6 0 3074 3195 413971525 413971646 4.070000e-45 193.0
17 TraesCS3D01G225900 chr4D 96.466 283 10 0 3708 3990 305412756 305413038 6.040000e-128 468.0
18 TraesCS3D01G225900 chr4D 95.760 283 12 0 3708 3990 305404777 305405059 1.310000e-124 457.0
19 TraesCS3D01G225900 chr4D 78.099 242 40 9 72 308 132779754 132779987 1.490000e-29 141.0
20 TraesCS3D01G225900 chr7D 93.640 283 18 0 3708 3990 348044157 348044439 1.330000e-114 424.0
21 TraesCS3D01G225900 chr7D 93.548 279 18 0 3712 3990 348051957 348052235 2.220000e-112 416.0
22 TraesCS3D01G225900 chr2D 91.549 284 19 5 3708 3989 445409433 445409153 1.740000e-103 387.0
23 TraesCS3D01G225900 chr2D 83.969 262 39 3 48 306 601956343 601956604 8.560000e-62 248.0
24 TraesCS3D01G225900 chr2D 82.051 117 20 1 149 265 52943040 52943155 9.130000e-17 99.0
25 TraesCS3D01G225900 chr1D 88.693 283 27 5 3708 3988 38184772 38184493 1.370000e-89 340.0
26 TraesCS3D01G225900 chr6A 79.856 417 80 3 1135 1549 599831937 599831523 6.480000e-78 302.0
27 TraesCS3D01G225900 chr6D 79.286 420 83 3 1135 1552 453652376 453651959 1.400000e-74 291.0
28 TraesCS3D01G225900 chr6B 77.406 478 98 9 1077 1549 688469601 688470073 3.930000e-70 276.0
29 TraesCS3D01G225900 chr6B 79.600 250 51 0 1300 1549 689033184 689032935 3.170000e-41 180.0
30 TraesCS3D01G225900 chr2A 75.521 384 88 5 1169 1549 174039259 174039639 2.450000e-42 183.0
31 TraesCS3D01G225900 chr1B 82.547 212 32 4 3320 3527 10406405 10406195 8.810000e-42 182.0
32 TraesCS3D01G225900 chr5D 78.113 265 45 9 55 308 52394164 52393902 5.340000e-34 156.0
33 TraesCS3D01G225900 chr5D 78.173 197 38 3 72 264 397023354 397023159 1.950000e-23 121.0
34 TraesCS3D01G225900 chr4B 77.778 252 49 6 60 306 16872610 16872361 8.930000e-32 148.0
35 TraesCS3D01G225900 chr4A 78.652 178 28 9 72 244 429428460 429428288 4.220000e-20 110.0
36 TraesCS3D01G225900 chr2B 79.675 123 24 1 150 271 540810935 540810813 1.980000e-13 87.9
37 TraesCS3D01G225900 chr5A 82.558 86 10 4 239 320 29609646 29609730 1.990000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G225900 chr3D 307793240 307797229 3989 True 7369.000000 7369 100.000 1 3990 1 chr3D.!!$R2 3989
1 TraesCS3D01G225900 chr3D 307880032 307881974 1942 False 215.500000 231 76.025 1053 2400 2 chr3D.!!$F3 1347
2 TraesCS3D01G225900 chr3A 427090600 427095549 4949 True 1182.575000 2573 91.965 1 3205 4 chr3A.!!$R1 3204
3 TraesCS3D01G225900 chr3B 413968566 413972745 4179 False 891.333333 2305 93.791 1 3707 6 chr3B.!!$F1 3706

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
742 2457 0.324368 ACCTATCCTGCTCGTCACCA 60.324 55.0 0.0 0.0 0.00 4.17 F
869 2588 0.887933 AACAAATGGGCACGATCCAC 59.112 50.0 0.0 0.0 37.08 4.02 F
2555 4992 0.179056 ACTTCCTGTGTTGTGTCGGG 60.179 55.0 0.0 0.0 0.00 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2419 4856 0.169009 CCGTTTTGAGCCTGCTTAGC 59.831 55.000 0.00 0.00 0.00 3.09 R
2671 5108 1.077429 GGGGAGCTCAACCATGACC 60.077 63.158 17.19 4.37 0.00 4.02 R
3759 6880 0.250124 TGGCAACAGTAACGGAGGTG 60.250 55.000 0.00 0.00 46.17 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 61 0.331954 TCTCTACTGTTCGAGCCCCT 59.668 55.000 0.00 0.00 0.00 4.79
64 67 3.477346 GTTCGAGCCCCTACCCCC 61.477 72.222 0.00 0.00 0.00 5.40
92 95 0.885879 GGTTTGGTTAAGGCCTTCGG 59.114 55.000 24.49 0.00 0.00 4.30
113 116 6.465948 TCGGTTTTAGATGCTAGGTTTTGTA 58.534 36.000 0.00 0.00 0.00 2.41
144 147 3.475566 GCAGACAGCCCTAATCATGTA 57.524 47.619 0.00 0.00 37.23 2.29
175 178 5.188327 TCATCAAGTTGATAGGAGTAGCG 57.812 43.478 17.86 3.20 34.28 4.26
186 189 8.679100 GTTGATAGGAGTAGCGATAGATATTGT 58.321 37.037 0.00 0.00 40.19 2.71
194 197 7.598278 AGTAGCGATAGATATTGTCAGGAAAG 58.402 38.462 0.00 0.00 40.19 2.62
198 201 6.738731 GCGATAGATATTGTCAGGAAAGTGGA 60.739 42.308 0.00 0.00 39.76 4.02
201 204 9.213799 GATAGATATTGTCAGGAAAGTGGATTC 57.786 37.037 0.00 0.00 0.00 2.52
299 302 1.972978 AGGGTCGTCCTCTTTTCCG 59.027 57.895 0.00 0.00 44.06 4.30
398 401 6.088173 CCATGTGGTCAATATGCATTTATCG 58.912 40.000 3.54 0.00 0.00 2.92
464 471 5.344665 TGTTCAAATAATTTAGCTTGCGCAC 59.655 36.000 11.12 0.00 39.10 5.34
622 2327 3.678056 TGGCGTTGACTTTAGATGTCT 57.322 42.857 0.00 0.00 35.63 3.41
623 2328 3.325870 TGGCGTTGACTTTAGATGTCTG 58.674 45.455 0.00 0.00 35.63 3.51
624 2329 3.006430 TGGCGTTGACTTTAGATGTCTGA 59.994 43.478 0.00 0.00 35.63 3.27
635 2349 8.545229 ACTTTAGATGTCTGAATATATGCAGC 57.455 34.615 15.16 10.96 32.27 5.25
639 2353 1.734465 GTCTGAATATATGCAGCGGGC 59.266 52.381 15.16 3.02 45.13 6.13
687 2402 4.645956 GAGCAATCTGAGTTGTGATTTCG 58.354 43.478 0.00 0.00 31.35 3.46
688 2403 4.318332 AGCAATCTGAGTTGTGATTTCGA 58.682 39.130 0.00 0.00 31.35 3.71
691 2406 5.385617 CAATCTGAGTTGTGATTTCGAACC 58.614 41.667 0.00 0.00 31.35 3.62
742 2457 0.324368 ACCTATCCTGCTCGTCACCA 60.324 55.000 0.00 0.00 0.00 4.17
750 2465 1.005630 GCTCGTCACCACTCAGCTT 60.006 57.895 0.00 0.00 0.00 3.74
766 2481 2.482326 CTTGACCAAGCCGATTCCC 58.518 57.895 0.00 0.00 0.00 3.97
769 2484 2.046314 ACCAAGCCGATTCCCGTG 60.046 61.111 0.00 0.00 36.31 4.94
770 2485 2.046314 CCAAGCCGATTCCCGTGT 60.046 61.111 0.00 0.00 36.31 4.49
869 2588 0.887933 AACAAATGGGCACGATCCAC 59.112 50.000 0.00 0.00 37.08 4.02
928 2647 2.124860 GGCCCACCACCGTACATC 60.125 66.667 0.00 0.00 35.26 3.06
956 2675 3.686726 GCTCCAGTAAATGTCCACTTGAG 59.313 47.826 0.00 0.00 37.52 3.02
1080 2800 4.641645 TTCCTGGTGTGCGGCCTG 62.642 66.667 0.00 0.00 0.00 4.85
1203 2923 3.396570 CCCTACCGCTTCCCCGTT 61.397 66.667 0.00 0.00 0.00 4.44
1552 3272 2.228343 CTCGAGAAGGTCAAGGTACGTT 59.772 50.000 6.58 0.00 0.00 3.99
1554 3274 3.189287 TCGAGAAGGTCAAGGTACGTTAC 59.811 47.826 0.00 0.86 0.00 2.50
1572 3293 6.481051 CGTTACGTACGCTAATATGTTTCA 57.519 37.500 16.72 0.00 44.26 2.69
1618 3395 9.445786 CCGTATGAAACATTTAAACATCATACC 57.554 33.333 22.66 13.87 43.09 2.73
1684 3472 5.319140 TCTTGATCTTTGGAATGTGCATG 57.681 39.130 0.00 0.00 0.00 4.06
1850 3638 4.189188 CCGCATTCAGCAGCAGCC 62.189 66.667 0.00 0.00 46.13 4.85
2338 4775 1.757118 ACGTGGACCATGATCCTACTG 59.243 52.381 20.86 3.90 39.75 2.74
2387 4824 1.813102 GAGGGAGGAGATCATGGGTT 58.187 55.000 0.00 0.00 0.00 4.11
2419 4856 4.705023 AGAAACAAACCGGAATATGAAGGG 59.295 41.667 9.46 0.00 0.00 3.95
2428 4865 3.416156 GGAATATGAAGGGCTAAGCAGG 58.584 50.000 0.00 0.00 0.00 4.85
2460 4897 8.514330 ACGGTGAGGCTTAAATATATTCAAAA 57.486 30.769 0.00 0.00 0.00 2.44
2524 4961 2.029649 ACCACATCAGCTTGTTGATTGC 60.030 45.455 0.00 0.00 35.67 3.56
2555 4992 0.179056 ACTTCCTGTGTTGTGTCGGG 60.179 55.000 0.00 0.00 0.00 5.14
2713 5150 4.857679 TGATGTTCATCCATCATGACCAA 58.142 39.130 0.00 0.00 44.70 3.67
2926 5363 0.040336 CGCCGTCGTATAGTCATGCT 60.040 55.000 0.00 0.00 0.00 3.79
2950 5387 7.360691 GCTCCATATACTGTGATAACATTGCAG 60.361 40.741 0.00 0.00 0.00 4.41
3054 5521 8.984764 AGTGAATGTGATGATTTTTCATGTTTG 58.015 29.630 0.00 0.00 0.00 2.93
3055 5522 8.980610 GTGAATGTGATGATTTTTCATGTTTGA 58.019 29.630 0.00 0.00 0.00 2.69
3056 5523 9.198837 TGAATGTGATGATTTTTCATGTTTGAG 57.801 29.630 0.00 0.00 32.27 3.02
3057 5524 8.542497 AATGTGATGATTTTTCATGTTTGAGG 57.458 30.769 0.00 0.00 32.27 3.86
3058 5525 7.053316 TGTGATGATTTTTCATGTTTGAGGT 57.947 32.000 0.00 0.00 32.27 3.85
3059 5526 7.499292 TGTGATGATTTTTCATGTTTGAGGTT 58.501 30.769 0.00 0.00 32.27 3.50
3060 5527 7.652909 TGTGATGATTTTTCATGTTTGAGGTTC 59.347 33.333 0.00 0.00 32.27 3.62
3061 5528 7.869429 GTGATGATTTTTCATGTTTGAGGTTCT 59.131 33.333 0.00 0.00 32.27 3.01
3062 5529 7.868922 TGATGATTTTTCATGTTTGAGGTTCTG 59.131 33.333 0.00 0.00 32.27 3.02
3063 5530 7.111247 TGATTTTTCATGTTTGAGGTTCTGT 57.889 32.000 0.00 0.00 32.27 3.41
3064 5531 7.555087 TGATTTTTCATGTTTGAGGTTCTGTT 58.445 30.769 0.00 0.00 32.27 3.16
3065 5532 8.040132 TGATTTTTCATGTTTGAGGTTCTGTTT 58.960 29.630 0.00 0.00 32.27 2.83
3066 5533 8.791327 ATTTTTCATGTTTGAGGTTCTGTTTT 57.209 26.923 0.00 0.00 32.27 2.43
3067 5534 7.593875 TTTTCATGTTTGAGGTTCTGTTTTG 57.406 32.000 0.00 0.00 32.27 2.44
3068 5535 6.522625 TTCATGTTTGAGGTTCTGTTTTGA 57.477 33.333 0.00 0.00 32.27 2.69
3069 5536 6.713762 TCATGTTTGAGGTTCTGTTTTGAT 57.286 33.333 0.00 0.00 0.00 2.57
3070 5537 7.815840 TCATGTTTGAGGTTCTGTTTTGATA 57.184 32.000 0.00 0.00 0.00 2.15
3071 5538 7.874940 TCATGTTTGAGGTTCTGTTTTGATAG 58.125 34.615 0.00 0.00 0.00 2.08
3072 5539 7.719193 TCATGTTTGAGGTTCTGTTTTGATAGA 59.281 33.333 0.00 0.00 0.00 1.98
3073 5540 8.517878 CATGTTTGAGGTTCTGTTTTGATAGAT 58.482 33.333 0.00 0.00 0.00 1.98
3074 5541 8.463930 TGTTTGAGGTTCTGTTTTGATAGATT 57.536 30.769 0.00 0.00 0.00 2.40
3075 5542 8.912988 TGTTTGAGGTTCTGTTTTGATAGATTT 58.087 29.630 0.00 0.00 0.00 2.17
3150 5617 8.391075 TCAGTTACTGCTAAGCACTTTAAAAT 57.609 30.769 7.61 0.00 33.79 1.82
3205 5672 9.233232 TCGTCATGTATTTATATGCGATGATAC 57.767 33.333 0.00 0.00 32.95 2.24
3206 5673 9.019764 CGTCATGTATTTATATGCGATGATACA 57.980 33.333 0.00 0.00 35.30 2.29
3210 5677 9.890629 ATGTATTTATATGCGATGATACAAGGT 57.109 29.630 10.63 0.00 34.72 3.50
3214 5681 8.757164 TTTATATGCGATGATACAAGGTACAG 57.243 34.615 0.00 0.00 0.00 2.74
3215 5682 4.937201 ATGCGATGATACAAGGTACAGA 57.063 40.909 0.00 0.00 0.00 3.41
3216 5683 4.307443 TGCGATGATACAAGGTACAGAG 57.693 45.455 0.00 0.00 0.00 3.35
3217 5684 3.951680 TGCGATGATACAAGGTACAGAGA 59.048 43.478 0.00 0.00 0.00 3.10
3218 5685 4.584743 TGCGATGATACAAGGTACAGAGAT 59.415 41.667 0.00 0.00 0.00 2.75
3219 5686 5.157781 GCGATGATACAAGGTACAGAGATC 58.842 45.833 0.00 0.00 0.00 2.75
3220 5687 5.386447 CGATGATACAAGGTACAGAGATCG 58.614 45.833 0.00 0.00 0.00 3.69
3221 5688 5.179555 CGATGATACAAGGTACAGAGATCGA 59.820 44.000 0.00 0.00 0.00 3.59
3222 5689 6.293462 CGATGATACAAGGTACAGAGATCGAA 60.293 42.308 0.00 0.00 0.00 3.71
3223 5690 6.132791 TGATACAAGGTACAGAGATCGAAC 57.867 41.667 0.00 0.00 0.00 3.95
3224 5691 5.886474 TGATACAAGGTACAGAGATCGAACT 59.114 40.000 0.00 0.00 0.00 3.01
3225 5692 7.052248 TGATACAAGGTACAGAGATCGAACTA 58.948 38.462 0.00 0.00 0.00 2.24
3226 5693 7.720074 TGATACAAGGTACAGAGATCGAACTAT 59.280 37.037 0.00 0.00 0.00 2.12
3227 5694 6.137794 ACAAGGTACAGAGATCGAACTATG 57.862 41.667 14.87 14.87 35.56 2.23
3228 5695 5.886474 ACAAGGTACAGAGATCGAACTATGA 59.114 40.000 22.12 5.11 33.92 2.15
3229 5696 6.038825 ACAAGGTACAGAGATCGAACTATGAG 59.961 42.308 22.12 8.16 33.92 2.90
3230 5697 5.931294 AGGTACAGAGATCGAACTATGAGA 58.069 41.667 22.12 8.16 33.92 3.27
3231 5698 6.539173 AGGTACAGAGATCGAACTATGAGAT 58.461 40.000 22.12 4.50 33.92 2.75
3232 5699 6.653320 AGGTACAGAGATCGAACTATGAGATC 59.347 42.308 22.12 10.69 40.61 2.75
3233 5700 5.605564 ACAGAGATCGAACTATGAGATCG 57.394 43.478 22.12 0.20 43.87 3.69
3234 5701 5.060506 ACAGAGATCGAACTATGAGATCGT 58.939 41.667 22.12 0.00 43.87 3.73
3235 5702 6.224584 ACAGAGATCGAACTATGAGATCGTA 58.775 40.000 22.12 0.00 43.87 3.43
3236 5703 6.706716 ACAGAGATCGAACTATGAGATCGTAA 59.293 38.462 22.12 0.00 43.87 3.18
3237 5704 7.012943 CAGAGATCGAACTATGAGATCGTAAC 58.987 42.308 11.49 0.98 43.87 2.50
3238 5705 5.918082 AGATCGAACTATGAGATCGTAACG 58.082 41.667 0.00 0.00 43.87 3.18
3239 5706 5.695363 AGATCGAACTATGAGATCGTAACGA 59.305 40.000 0.00 0.00 43.87 3.85
3240 5707 5.326120 TCGAACTATGAGATCGTAACGAG 57.674 43.478 6.12 0.00 40.69 4.18
3241 5708 3.901290 CGAACTATGAGATCGTAACGAGC 59.099 47.826 0.00 0.00 42.87 5.03
3252 5719 6.657500 GATCGTAACGAGCTACAGATAAAC 57.343 41.667 0.00 0.00 39.28 2.01
3253 5720 4.913376 TCGTAACGAGCTACAGATAAACC 58.087 43.478 0.00 0.00 0.00 3.27
3254 5721 3.722780 CGTAACGAGCTACAGATAAACCG 59.277 47.826 0.00 0.00 0.00 4.44
3255 5722 3.863142 AACGAGCTACAGATAAACCGT 57.137 42.857 0.00 0.00 0.00 4.83
3256 5723 4.970662 AACGAGCTACAGATAAACCGTA 57.029 40.909 0.00 0.00 0.00 4.02
3257 5724 5.511234 AACGAGCTACAGATAAACCGTAT 57.489 39.130 0.00 0.00 0.00 3.06
3258 5725 5.511234 ACGAGCTACAGATAAACCGTATT 57.489 39.130 0.00 0.00 0.00 1.89
3259 5726 5.899299 ACGAGCTACAGATAAACCGTATTT 58.101 37.500 0.00 0.00 0.00 1.40
3260 5727 7.031226 ACGAGCTACAGATAAACCGTATTTA 57.969 36.000 0.00 0.00 0.00 1.40
3265 5732 7.493645 AGCTACAGATAAACCGTATTTACAACC 59.506 37.037 0.00 0.00 0.00 3.77
3286 5753 8.139989 ACAACCAACGAGATATACCATACTAAC 58.860 37.037 0.00 0.00 0.00 2.34
3305 5778 6.958767 ACTAACTACCTCAACTTGGCATTAT 58.041 36.000 0.00 0.00 0.00 1.28
3373 5846 4.244066 CAGAGAGGTTGAGATTGTGTCTG 58.756 47.826 0.00 0.00 37.29 3.51
3409 5882 8.168058 AGTTGTTGTATTCCTATGGGTTTAGTT 58.832 33.333 0.00 0.00 0.00 2.24
3506 5980 7.219484 ACAAAATAGAAGTCAACCTCAATGG 57.781 36.000 0.00 0.00 42.93 3.16
3552 6672 0.820871 AGGTCCTGAATGAGACGAGC 59.179 55.000 0.00 0.00 33.66 5.03
3605 6725 9.087424 CAATTATGTCATCCACATATACCTACG 57.913 37.037 0.00 0.00 45.65 3.51
3626 6746 6.737254 ACGTAAAAATAATGACTCCACCAG 57.263 37.500 0.00 0.00 0.00 4.00
3672 6793 2.471255 CACGAGAGGGCATGAAACC 58.529 57.895 0.00 0.00 0.00 3.27
3714 6835 1.874562 ACGAGAGTACCTGTGACGC 59.125 57.895 0.00 0.00 46.88 5.19
3715 6836 1.136984 CGAGAGTACCTGTGACGCC 59.863 63.158 0.00 0.00 0.00 5.68
3716 6837 1.511768 GAGAGTACCTGTGACGCCC 59.488 63.158 0.00 0.00 0.00 6.13
3717 6838 2.181021 GAGTACCTGTGACGCCCG 59.819 66.667 0.00 0.00 0.00 6.13
3718 6839 3.352338 GAGTACCTGTGACGCCCGG 62.352 68.421 0.00 0.00 0.00 5.73
3719 6840 3.376078 GTACCTGTGACGCCCGGA 61.376 66.667 0.73 0.00 0.00 5.14
3720 6841 2.363276 TACCTGTGACGCCCGGAT 60.363 61.111 0.73 0.00 0.00 4.18
3721 6842 1.076850 TACCTGTGACGCCCGGATA 60.077 57.895 0.73 0.00 0.00 2.59
3722 6843 0.468585 TACCTGTGACGCCCGGATAT 60.469 55.000 0.73 0.00 0.00 1.63
3723 6844 1.335132 ACCTGTGACGCCCGGATATT 61.335 55.000 0.73 0.00 0.00 1.28
3724 6845 0.179056 CCTGTGACGCCCGGATATTT 60.179 55.000 0.73 0.00 0.00 1.40
3725 6846 1.069513 CCTGTGACGCCCGGATATTTA 59.930 52.381 0.73 0.00 0.00 1.40
3726 6847 2.484065 CCTGTGACGCCCGGATATTTAA 60.484 50.000 0.73 0.00 0.00 1.52
3727 6848 2.800544 CTGTGACGCCCGGATATTTAAG 59.199 50.000 0.73 0.00 0.00 1.85
3728 6849 1.529865 GTGACGCCCGGATATTTAAGC 59.470 52.381 0.73 0.00 0.00 3.09
3729 6850 1.414919 TGACGCCCGGATATTTAAGCT 59.585 47.619 0.73 0.00 0.00 3.74
3730 6851 2.629137 TGACGCCCGGATATTTAAGCTA 59.371 45.455 0.73 0.00 0.00 3.32
3731 6852 2.991866 GACGCCCGGATATTTAAGCTAC 59.008 50.000 0.73 0.00 0.00 3.58
3732 6853 2.366266 ACGCCCGGATATTTAAGCTACA 59.634 45.455 0.73 0.00 0.00 2.74
3733 6854 2.993899 CGCCCGGATATTTAAGCTACAG 59.006 50.000 0.73 0.00 0.00 2.74
3734 6855 3.554337 CGCCCGGATATTTAAGCTACAGT 60.554 47.826 0.73 0.00 0.00 3.55
3735 6856 3.746492 GCCCGGATATTTAAGCTACAGTG 59.254 47.826 0.73 0.00 0.00 3.66
3736 6857 4.502604 GCCCGGATATTTAAGCTACAGTGA 60.503 45.833 0.73 0.00 0.00 3.41
3737 6858 5.607477 CCCGGATATTTAAGCTACAGTGAA 58.393 41.667 0.73 0.00 0.00 3.18
3738 6859 6.053005 CCCGGATATTTAAGCTACAGTGAAA 58.947 40.000 0.73 0.00 0.00 2.69
3739 6860 6.018180 CCCGGATATTTAAGCTACAGTGAAAC 60.018 42.308 0.73 0.00 0.00 2.78
3756 6877 5.862811 GTGAAACTCTGCTAATGATGTCAC 58.137 41.667 0.00 0.00 0.00 3.67
3757 6878 4.627035 TGAAACTCTGCTAATGATGTCACG 59.373 41.667 0.00 0.00 0.00 4.35
3758 6879 2.544685 ACTCTGCTAATGATGTCACGC 58.455 47.619 0.00 0.00 0.00 5.34
3759 6880 1.863454 CTCTGCTAATGATGTCACGCC 59.137 52.381 0.00 0.00 0.00 5.68
3760 6881 1.206849 TCTGCTAATGATGTCACGCCA 59.793 47.619 0.00 0.00 0.00 5.69
3761 6882 1.328680 CTGCTAATGATGTCACGCCAC 59.671 52.381 0.00 0.00 0.00 5.01
3762 6883 0.657840 GCTAATGATGTCACGCCACC 59.342 55.000 0.00 0.00 0.00 4.61
3763 6884 1.743772 GCTAATGATGTCACGCCACCT 60.744 52.381 0.00 0.00 0.00 4.00
3764 6885 2.205074 CTAATGATGTCACGCCACCTC 58.795 52.381 0.00 0.00 0.00 3.85
3765 6886 0.392998 AATGATGTCACGCCACCTCC 60.393 55.000 0.00 0.00 0.00 4.30
3766 6887 2.509336 GATGTCACGCCACCTCCG 60.509 66.667 0.00 0.00 0.00 4.63
3767 6888 3.296709 GATGTCACGCCACCTCCGT 62.297 63.158 0.00 0.00 39.91 4.69
3768 6889 2.781595 GATGTCACGCCACCTCCGTT 62.782 60.000 0.00 0.00 36.69 4.44
3769 6890 1.537814 ATGTCACGCCACCTCCGTTA 61.538 55.000 0.00 0.00 36.69 3.18
3770 6891 1.735559 GTCACGCCACCTCCGTTAC 60.736 63.158 0.00 0.00 36.69 2.50
3771 6892 1.904865 TCACGCCACCTCCGTTACT 60.905 57.895 0.00 0.00 36.69 2.24
3772 6893 1.736645 CACGCCACCTCCGTTACTG 60.737 63.158 0.00 0.00 36.69 2.74
3773 6894 2.205152 ACGCCACCTCCGTTACTGT 61.205 57.895 0.00 0.00 34.96 3.55
3774 6895 1.005394 CGCCACCTCCGTTACTGTT 60.005 57.895 0.00 0.00 0.00 3.16
3775 6896 1.289109 CGCCACCTCCGTTACTGTTG 61.289 60.000 0.00 0.00 0.00 3.33
3776 6897 1.574702 GCCACCTCCGTTACTGTTGC 61.575 60.000 0.00 0.00 0.00 4.17
3777 6898 0.953960 CCACCTCCGTTACTGTTGCC 60.954 60.000 0.00 0.00 0.00 4.52
3778 6899 0.250124 CACCTCCGTTACTGTTGCCA 60.250 55.000 0.00 0.00 0.00 4.92
3779 6900 0.470766 ACCTCCGTTACTGTTGCCAA 59.529 50.000 0.00 0.00 0.00 4.52
3780 6901 1.073284 ACCTCCGTTACTGTTGCCAAT 59.927 47.619 0.00 0.00 0.00 3.16
3781 6902 1.737793 CCTCCGTTACTGTTGCCAATC 59.262 52.381 0.00 0.00 0.00 2.67
3782 6903 2.615493 CCTCCGTTACTGTTGCCAATCT 60.615 50.000 0.00 0.00 0.00 2.40
3783 6904 2.673368 CTCCGTTACTGTTGCCAATCTC 59.327 50.000 0.00 0.00 0.00 2.75
3784 6905 2.301870 TCCGTTACTGTTGCCAATCTCT 59.698 45.455 0.00 0.00 0.00 3.10
3785 6906 2.673368 CCGTTACTGTTGCCAATCTCTC 59.327 50.000 0.00 0.00 0.00 3.20
3786 6907 2.345641 CGTTACTGTTGCCAATCTCTCG 59.654 50.000 0.00 0.00 0.00 4.04
3787 6908 3.326747 GTTACTGTTGCCAATCTCTCGT 58.673 45.455 0.00 0.00 0.00 4.18
3788 6909 2.550830 ACTGTTGCCAATCTCTCGTT 57.449 45.000 0.00 0.00 0.00 3.85
3789 6910 3.678056 ACTGTTGCCAATCTCTCGTTA 57.322 42.857 0.00 0.00 0.00 3.18
3790 6911 3.589988 ACTGTTGCCAATCTCTCGTTAG 58.410 45.455 0.00 0.00 0.00 2.34
3791 6912 3.006967 ACTGTTGCCAATCTCTCGTTAGT 59.993 43.478 0.00 0.00 0.00 2.24
3792 6913 3.997021 CTGTTGCCAATCTCTCGTTAGTT 59.003 43.478 0.00 0.00 0.00 2.24
3793 6914 3.994392 TGTTGCCAATCTCTCGTTAGTTC 59.006 43.478 0.00 0.00 0.00 3.01
3794 6915 2.876091 TGCCAATCTCTCGTTAGTTCG 58.124 47.619 0.00 0.00 0.00 3.95
3795 6916 2.490509 TGCCAATCTCTCGTTAGTTCGA 59.509 45.455 0.00 0.00 38.19 3.71
3796 6917 3.057104 TGCCAATCTCTCGTTAGTTCGAA 60.057 43.478 0.00 0.00 39.34 3.71
3797 6918 3.924686 GCCAATCTCTCGTTAGTTCGAAA 59.075 43.478 0.00 0.00 39.34 3.46
3798 6919 4.567159 GCCAATCTCTCGTTAGTTCGAAAT 59.433 41.667 2.72 2.72 39.34 2.17
3799 6920 5.063564 GCCAATCTCTCGTTAGTTCGAAATT 59.936 40.000 2.37 0.00 39.34 1.82
3800 6921 6.470160 CCAATCTCTCGTTAGTTCGAAATTG 58.530 40.000 2.37 4.30 39.34 2.32
3801 6922 6.455646 CCAATCTCTCGTTAGTTCGAAATTGG 60.456 42.308 2.37 9.69 41.73 3.16
3802 6923 5.130292 TCTCTCGTTAGTTCGAAATTGGT 57.870 39.130 2.37 0.00 39.34 3.67
3803 6924 5.535333 TCTCTCGTTAGTTCGAAATTGGTT 58.465 37.500 2.37 0.00 39.34 3.67
3804 6925 5.632347 TCTCTCGTTAGTTCGAAATTGGTTC 59.368 40.000 2.37 0.00 39.34 3.62
3805 6926 5.291178 TCTCGTTAGTTCGAAATTGGTTCA 58.709 37.500 2.37 0.00 39.34 3.18
3806 6927 5.754406 TCTCGTTAGTTCGAAATTGGTTCAA 59.246 36.000 2.37 0.00 39.34 2.69
3807 6928 6.258287 TCTCGTTAGTTCGAAATTGGTTCAAA 59.742 34.615 2.37 0.00 39.34 2.69
3808 6929 6.783162 TCGTTAGTTCGAAATTGGTTCAAAA 58.217 32.000 2.37 0.00 36.89 2.44
3809 6930 7.249147 TCGTTAGTTCGAAATTGGTTCAAAAA 58.751 30.769 2.37 0.00 36.89 1.94
3810 6931 7.916450 TCGTTAGTTCGAAATTGGTTCAAAAAT 59.084 29.630 2.37 0.00 36.89 1.82
3811 6932 8.205297 CGTTAGTTCGAAATTGGTTCAAAAATC 58.795 33.333 2.37 0.00 35.83 2.17
3812 6933 9.026074 GTTAGTTCGAAATTGGTTCAAAAATCA 57.974 29.630 2.37 0.00 35.83 2.57
3813 6934 9.587772 TTAGTTCGAAATTGGTTCAAAAATCAA 57.412 25.926 2.37 0.00 39.72 2.57
3814 6935 8.485976 AGTTCGAAATTGGTTCAAAAATCAAA 57.514 26.923 0.00 0.00 38.91 2.69
3815 6936 9.108284 AGTTCGAAATTGGTTCAAAAATCAAAT 57.892 25.926 0.00 0.00 38.91 2.32
3816 6937 9.715123 GTTCGAAATTGGTTCAAAAATCAAATT 57.285 25.926 0.00 0.00 38.91 1.82
3817 6938 9.928236 TTCGAAATTGGTTCAAAAATCAAATTC 57.072 25.926 0.00 3.09 40.03 2.17
3818 6939 9.102757 TCGAAATTGGTTCAAAAATCAAATTCA 57.897 25.926 10.76 0.00 42.04 2.57
3819 6940 9.713740 CGAAATTGGTTCAAAAATCAAATTCAA 57.286 25.926 10.76 0.00 42.04 2.69
3824 6945 8.783833 TGGTTCAAAAATCAAATTCAAAGTCA 57.216 26.923 0.00 0.00 0.00 3.41
3825 6946 8.663911 TGGTTCAAAAATCAAATTCAAAGTCAC 58.336 29.630 0.00 0.00 0.00 3.67
3826 6947 7.845622 GGTTCAAAAATCAAATTCAAAGTCACG 59.154 33.333 0.00 0.00 0.00 4.35
3827 6948 7.462109 TCAAAAATCAAATTCAAAGTCACGG 57.538 32.000 0.00 0.00 0.00 4.94
3828 6949 5.905480 AAAATCAAATTCAAAGTCACGGC 57.095 34.783 0.00 0.00 0.00 5.68
3829 6950 4.582701 AATCAAATTCAAAGTCACGGCA 57.417 36.364 0.00 0.00 0.00 5.69
3830 6951 4.582701 ATCAAATTCAAAGTCACGGCAA 57.417 36.364 0.00 0.00 0.00 4.52
3831 6952 4.377839 TCAAATTCAAAGTCACGGCAAA 57.622 36.364 0.00 0.00 0.00 3.68
3832 6953 4.109050 TCAAATTCAAAGTCACGGCAAAC 58.891 39.130 0.00 0.00 0.00 2.93
3833 6954 3.791973 AATTCAAAGTCACGGCAAACA 57.208 38.095 0.00 0.00 0.00 2.83
3834 6955 3.791973 ATTCAAAGTCACGGCAAACAA 57.208 38.095 0.00 0.00 0.00 2.83
3835 6956 3.791973 TTCAAAGTCACGGCAAACAAT 57.208 38.095 0.00 0.00 0.00 2.71
3836 6957 4.902443 TTCAAAGTCACGGCAAACAATA 57.098 36.364 0.00 0.00 0.00 1.90
3837 6958 4.902443 TCAAAGTCACGGCAAACAATAA 57.098 36.364 0.00 0.00 0.00 1.40
3838 6959 5.250235 TCAAAGTCACGGCAAACAATAAA 57.750 34.783 0.00 0.00 0.00 1.40
3839 6960 5.651530 TCAAAGTCACGGCAAACAATAAAA 58.348 33.333 0.00 0.00 0.00 1.52
3840 6961 5.746245 TCAAAGTCACGGCAAACAATAAAAG 59.254 36.000 0.00 0.00 0.00 2.27
3841 6962 4.911514 AGTCACGGCAAACAATAAAAGT 57.088 36.364 0.00 0.00 0.00 2.66
3842 6963 5.257082 AGTCACGGCAAACAATAAAAGTT 57.743 34.783 0.00 0.00 0.00 2.66
3843 6964 5.656480 AGTCACGGCAAACAATAAAAGTTT 58.344 33.333 0.00 0.00 39.61 2.66
3844 6965 6.103330 AGTCACGGCAAACAATAAAAGTTTT 58.897 32.000 6.06 6.06 37.10 2.43
3845 6966 6.254804 AGTCACGGCAAACAATAAAAGTTTTC 59.745 34.615 3.60 0.00 37.10 2.29
3846 6967 6.035112 GTCACGGCAAACAATAAAAGTTTTCA 59.965 34.615 3.60 0.00 37.10 2.69
3847 6968 6.590292 TCACGGCAAACAATAAAAGTTTTCAA 59.410 30.769 3.60 0.00 37.10 2.69
3848 6969 7.117812 TCACGGCAAACAATAAAAGTTTTCAAA 59.882 29.630 3.60 0.00 37.10 2.69
3849 6970 7.215381 CACGGCAAACAATAAAAGTTTTCAAAC 59.785 33.333 3.60 0.00 37.10 2.93
3873 6994 9.511144 AACTTTAAAACTAAAATGTTCGGAGTG 57.489 29.630 0.00 0.00 0.00 3.51
3874 6995 8.680001 ACTTTAAAACTAAAATGTTCGGAGTGT 58.320 29.630 0.00 0.00 0.00 3.55
3875 6996 8.844441 TTTAAAACTAAAATGTTCGGAGTGTG 57.156 30.769 0.00 0.00 0.00 3.82
3876 6997 4.483476 AACTAAAATGTTCGGAGTGTGC 57.517 40.909 0.00 0.00 0.00 4.57
3877 6998 2.812011 ACTAAAATGTTCGGAGTGTGCC 59.188 45.455 0.00 0.00 0.00 5.01
3878 6999 1.686355 AAAATGTTCGGAGTGTGCCA 58.314 45.000 0.00 0.00 0.00 4.92
3879 7000 1.686355 AAATGTTCGGAGTGTGCCAA 58.314 45.000 0.00 0.00 0.00 4.52
3880 7001 1.686355 AATGTTCGGAGTGTGCCAAA 58.314 45.000 0.00 0.00 0.00 3.28
3881 7002 1.909700 ATGTTCGGAGTGTGCCAAAT 58.090 45.000 0.00 0.00 0.00 2.32
3882 7003 2.552599 TGTTCGGAGTGTGCCAAATA 57.447 45.000 0.00 0.00 0.00 1.40
3883 7004 2.852449 TGTTCGGAGTGTGCCAAATAA 58.148 42.857 0.00 0.00 0.00 1.40
3884 7005 3.417101 TGTTCGGAGTGTGCCAAATAAT 58.583 40.909 0.00 0.00 0.00 1.28
3885 7006 3.190327 TGTTCGGAGTGTGCCAAATAATG 59.810 43.478 0.00 0.00 0.00 1.90
3886 7007 1.742831 TCGGAGTGTGCCAAATAATGC 59.257 47.619 0.00 0.00 0.00 3.56
3887 7008 1.202290 CGGAGTGTGCCAAATAATGCC 60.202 52.381 0.00 0.00 0.00 4.40
3888 7009 2.102578 GGAGTGTGCCAAATAATGCCT 58.897 47.619 0.00 0.00 0.00 4.75
3889 7010 3.287222 GGAGTGTGCCAAATAATGCCTA 58.713 45.455 0.00 0.00 0.00 3.93
3890 7011 3.699038 GGAGTGTGCCAAATAATGCCTAA 59.301 43.478 0.00 0.00 0.00 2.69
3891 7012 4.159506 GGAGTGTGCCAAATAATGCCTAAA 59.840 41.667 0.00 0.00 0.00 1.85
3892 7013 5.163416 GGAGTGTGCCAAATAATGCCTAAAT 60.163 40.000 0.00 0.00 0.00 1.40
3893 7014 6.040391 GGAGTGTGCCAAATAATGCCTAAATA 59.960 38.462 0.00 0.00 0.00 1.40
3894 7015 7.255942 GGAGTGTGCCAAATAATGCCTAAATAT 60.256 37.037 0.00 0.00 0.00 1.28
3895 7016 8.021898 AGTGTGCCAAATAATGCCTAAATATT 57.978 30.769 0.00 0.00 0.00 1.28
3896 7017 8.485392 AGTGTGCCAAATAATGCCTAAATATTT 58.515 29.630 5.89 5.89 31.25 1.40
3897 7018 9.108284 GTGTGCCAAATAATGCCTAAATATTTT 57.892 29.630 5.91 0.00 29.24 1.82
3900 7021 9.995003 TGCCAAATAATGCCTAAATATTTTAGG 57.005 29.630 17.81 17.81 43.38 2.69
3901 7022 9.996554 GCCAAATAATGCCTAAATATTTTAGGT 57.003 29.630 21.24 9.29 42.68 3.08
3908 7029 9.487442 AATGCCTAAATATTTTAGGTGAAGGAA 57.513 29.630 21.24 0.03 42.68 3.36
3909 7030 8.887264 TGCCTAAATATTTTAGGTGAAGGAAA 57.113 30.769 21.24 0.00 42.68 3.13
3910 7031 8.745590 TGCCTAAATATTTTAGGTGAAGGAAAC 58.254 33.333 21.24 7.39 42.68 2.78
3911 7032 8.745590 GCCTAAATATTTTAGGTGAAGGAAACA 58.254 33.333 21.24 0.00 42.68 2.83
3920 7041 9.589111 TTTTAGGTGAAGGAAACACAATTTTAC 57.411 29.630 0.00 0.00 39.65 2.01
3921 7042 6.783708 AGGTGAAGGAAACACAATTTTACA 57.216 33.333 0.00 0.00 39.65 2.41
3922 7043 6.805713 AGGTGAAGGAAACACAATTTTACAG 58.194 36.000 0.00 0.00 39.65 2.74
3923 7044 6.605594 AGGTGAAGGAAACACAATTTTACAGA 59.394 34.615 0.00 0.00 39.65 3.41
3924 7045 7.123547 AGGTGAAGGAAACACAATTTTACAGAA 59.876 33.333 0.00 0.00 39.65 3.02
3925 7046 7.926018 GGTGAAGGAAACACAATTTTACAGAAT 59.074 33.333 0.00 0.00 39.65 2.40
3926 7047 8.755018 GTGAAGGAAACACAATTTTACAGAATG 58.245 33.333 0.00 0.00 39.05 2.67
3927 7048 7.437862 TGAAGGAAACACAATTTTACAGAATGC 59.562 33.333 0.00 0.00 42.53 3.56
3928 7049 6.223120 AGGAAACACAATTTTACAGAATGCC 58.777 36.000 0.00 0.00 42.53 4.40
3929 7050 6.041979 AGGAAACACAATTTTACAGAATGCCT 59.958 34.615 0.00 0.00 42.53 4.75
3930 7051 7.232534 AGGAAACACAATTTTACAGAATGCCTA 59.767 33.333 0.00 0.00 42.53 3.93
3931 7052 7.870445 GGAAACACAATTTTACAGAATGCCTAA 59.130 33.333 0.00 0.00 42.53 2.69
3932 7053 9.255304 GAAACACAATTTTACAGAATGCCTAAA 57.745 29.630 0.00 0.00 42.53 1.85
3933 7054 9.777297 AAACACAATTTTACAGAATGCCTAAAT 57.223 25.926 0.00 0.00 42.53 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 7.479897 TCGAACAGTAGAGATGAGTGTATAC 57.520 40.000 0.00 0.00 30.18 1.47
92 95 8.398665 CCTCATACAAAACCTAGCATCTAAAAC 58.601 37.037 0.00 0.00 0.00 2.43
130 133 2.706190 GGAGGTGTACATGATTAGGGCT 59.294 50.000 0.00 0.00 0.00 5.19
144 147 4.647564 ATCAACTTGATGAAGGAGGTGT 57.352 40.909 3.32 0.00 35.43 4.16
175 178 9.213799 GAATCCACTTTCCTGACAATATCTATC 57.786 37.037 0.00 0.00 0.00 2.08
186 189 4.982241 AACTCTGAATCCACTTTCCTGA 57.018 40.909 0.00 0.00 0.00 3.86
281 284 6.499188 TTTTTCGGAAAAGAGGACGACCCT 62.499 45.833 14.84 0.00 37.64 4.34
464 471 5.050837 GGCAAACAAGCTAACACAATTCTTG 60.051 40.000 0.00 0.00 39.79 3.02
549 2253 2.964464 TGGAACACACCAAAATGCATCT 59.036 40.909 0.00 0.00 36.96 2.90
581 2286 5.939883 GCCATGCTTATATTCAGTGTATCCA 59.060 40.000 0.00 0.00 0.00 3.41
587 2292 4.273235 TCAACGCCATGCTTATATTCAGTG 59.727 41.667 0.00 0.00 0.00 3.66
588 2293 4.273480 GTCAACGCCATGCTTATATTCAGT 59.727 41.667 0.00 0.00 0.00 3.41
599 2304 2.420022 ACATCTAAAGTCAACGCCATGC 59.580 45.455 0.00 0.00 0.00 4.06
622 2327 0.673333 CGGCCCGCTGCATATATTCA 60.673 55.000 0.00 0.00 43.89 2.57
623 2328 1.369091 CCGGCCCGCTGCATATATTC 61.369 60.000 0.00 0.00 43.89 1.75
624 2329 1.377202 CCGGCCCGCTGCATATATT 60.377 57.895 0.00 0.00 43.89 1.28
635 2349 4.636435 AAACTGGACACCGGCCCG 62.636 66.667 0.00 0.00 32.02 6.13
639 2353 0.889186 CCTTGGAAACTGGACACCGG 60.889 60.000 0.00 0.00 35.68 5.28
687 2402 3.429085 CATTGATTGTTGCTAGCGGTTC 58.571 45.455 10.77 3.34 0.00 3.62
688 2403 2.164219 CCATTGATTGTTGCTAGCGGTT 59.836 45.455 10.77 0.00 0.00 4.44
691 2406 1.534595 GCCCATTGATTGTTGCTAGCG 60.535 52.381 10.77 0.00 0.00 4.26
722 2437 0.103208 GGTGACGAGCAGGATAGGTG 59.897 60.000 0.00 0.00 0.00 4.00
723 2438 0.324368 TGGTGACGAGCAGGATAGGT 60.324 55.000 0.00 0.00 0.00 3.08
727 2442 0.900182 TGAGTGGTGACGAGCAGGAT 60.900 55.000 0.00 0.00 0.00 3.24
728 2443 1.527433 CTGAGTGGTGACGAGCAGGA 61.527 60.000 0.00 0.00 0.00 3.86
729 2444 1.080230 CTGAGTGGTGACGAGCAGG 60.080 63.158 0.00 0.00 0.00 4.85
730 2445 1.735920 GCTGAGTGGTGACGAGCAG 60.736 63.158 0.00 0.00 34.32 4.24
731 2446 1.748329 AAGCTGAGTGGTGACGAGCA 61.748 55.000 0.00 0.00 35.79 4.26
732 2447 1.005630 AAGCTGAGTGGTGACGAGC 60.006 57.895 0.00 0.00 34.34 5.03
733 2448 0.315251 TCAAGCTGAGTGGTGACGAG 59.685 55.000 0.00 0.00 0.00 4.18
734 2449 0.032130 GTCAAGCTGAGTGGTGACGA 59.968 55.000 0.00 0.00 0.00 4.20
735 2450 0.946221 GGTCAAGCTGAGTGGTGACG 60.946 60.000 7.65 0.00 0.00 4.35
736 2451 0.106708 TGGTCAAGCTGAGTGGTGAC 59.893 55.000 5.56 5.56 0.00 3.67
750 2465 2.267642 CGGGAATCGGCTTGGTCA 59.732 61.111 0.00 0.00 34.75 4.02
766 2481 3.138304 TGGTGGAGAAGAAATTCACACG 58.862 45.455 0.00 0.00 34.26 4.49
769 2484 5.278512 GGAACTTGGTGGAGAAGAAATTCAC 60.279 44.000 0.00 0.00 0.00 3.18
770 2485 4.827284 GGAACTTGGTGGAGAAGAAATTCA 59.173 41.667 0.00 0.00 0.00 2.57
928 2647 2.359900 GACATTTACTGGAGCTGGGTG 58.640 52.381 0.00 0.00 0.00 4.61
956 2675 5.309323 CTATGCTAGCAGTAGGATCTGAC 57.691 47.826 23.89 0.00 38.26 3.51
1203 2923 1.219124 GTGCTCCTTGAGATCGCCA 59.781 57.895 0.00 0.00 0.00 5.69
1209 2929 4.069232 CGGCCGTGCTCCTTGAGA 62.069 66.667 19.50 0.00 0.00 3.27
1315 3035 2.273912 ACGTCCTCCCGTGTTCCTC 61.274 63.158 0.00 0.00 40.08 3.71
1593 3314 9.995957 TGGTATGATGTTTAAATGTTTCATACG 57.004 29.630 21.17 0.00 43.23 3.06
1657 3444 6.015265 TGCACATTCCAAAGATCAAGATCAAA 60.015 34.615 12.21 0.19 40.22 2.69
1684 3472 2.670635 CATACGCTGCAGAGTCACC 58.329 57.895 26.96 1.08 0.00 4.02
1850 3638 1.488393 GATCTTCCTCCCCTCAAGGTG 59.512 57.143 0.00 0.00 35.29 4.00
2113 4550 8.940768 TTCTTTTACCAACAAGATTTTTCAGG 57.059 30.769 0.00 0.00 0.00 3.86
2338 4775 2.821366 CACTCCGGGTGCATGCTC 60.821 66.667 20.33 15.68 39.22 4.26
2387 4824 6.466885 TTCCGGTTTGTTTCTTCCAAATAA 57.533 33.333 0.00 0.00 34.59 1.40
2419 4856 0.169009 CCGTTTTGAGCCTGCTTAGC 59.831 55.000 0.00 0.00 0.00 3.09
2428 4865 1.519408 TAAGCCTCACCGTTTTGAGC 58.481 50.000 1.35 0.00 41.61 4.26
2460 4897 4.489810 TGAAACAAAATCAGTTGCAACGT 58.510 34.783 23.21 10.74 31.72 3.99
2555 4992 5.041191 AGGATCATGGTCACCTACAATTC 57.959 43.478 8.54 0.00 0.00 2.17
2671 5108 1.077429 GGGGAGCTCAACCATGACC 60.077 63.158 17.19 4.37 0.00 4.02
2713 5150 1.304381 ATCGCTGCCCCAAATGTGT 60.304 52.632 0.00 0.00 0.00 3.72
2926 5363 6.427853 GCTGCAATGTTATCACAGTATATGGA 59.572 38.462 0.00 0.00 35.94 3.41
3047 5514 7.874940 TCTATCAAAACAGAACCTCAAACATG 58.125 34.615 0.00 0.00 0.00 3.21
3048 5515 8.641498 ATCTATCAAAACAGAACCTCAAACAT 57.359 30.769 0.00 0.00 0.00 2.71
3049 5516 8.463930 AATCTATCAAAACAGAACCTCAAACA 57.536 30.769 0.00 0.00 0.00 2.83
3050 5517 9.399403 GAAATCTATCAAAACAGAACCTCAAAC 57.601 33.333 0.00 0.00 0.00 2.93
3051 5518 9.130661 TGAAATCTATCAAAACAGAACCTCAAA 57.869 29.630 0.00 0.00 0.00 2.69
3052 5519 8.690203 TGAAATCTATCAAAACAGAACCTCAA 57.310 30.769 0.00 0.00 0.00 3.02
3053 5520 8.733458 CATGAAATCTATCAAAACAGAACCTCA 58.267 33.333 0.00 0.00 32.06 3.86
3054 5521 8.186821 CCATGAAATCTATCAAAACAGAACCTC 58.813 37.037 0.00 0.00 32.06 3.85
3055 5522 7.671398 ACCATGAAATCTATCAAAACAGAACCT 59.329 33.333 0.00 0.00 32.06 3.50
3056 5523 7.830739 ACCATGAAATCTATCAAAACAGAACC 58.169 34.615 0.00 0.00 32.06 3.62
3059 5526 9.904198 TCATACCATGAAATCTATCAAAACAGA 57.096 29.630 0.00 0.00 36.11 3.41
3075 5542 7.994425 ACACACACTTTTATTCATACCATGA 57.006 32.000 0.00 0.00 37.55 3.07
3150 5617 3.135994 GCCGAACTGACAGTTTTCCTTA 58.864 45.455 21.42 0.00 38.80 2.69
3205 5672 6.261158 TCTCATAGTTCGATCTCTGTACCTTG 59.739 42.308 0.00 0.00 0.00 3.61
3206 5673 6.358178 TCTCATAGTTCGATCTCTGTACCTT 58.642 40.000 0.00 0.00 0.00 3.50
3207 5674 5.931294 TCTCATAGTTCGATCTCTGTACCT 58.069 41.667 0.00 0.00 0.00 3.08
3208 5675 6.401688 CGATCTCATAGTTCGATCTCTGTACC 60.402 46.154 0.00 0.00 39.16 3.34
3209 5676 6.146510 ACGATCTCATAGTTCGATCTCTGTAC 59.853 42.308 12.82 0.00 39.16 2.90
3210 5677 6.224584 ACGATCTCATAGTTCGATCTCTGTA 58.775 40.000 12.82 0.00 39.16 2.74
3211 5678 5.060506 ACGATCTCATAGTTCGATCTCTGT 58.939 41.667 12.82 0.00 39.16 3.41
3212 5679 5.605564 ACGATCTCATAGTTCGATCTCTG 57.394 43.478 12.82 0.93 39.16 3.35
3213 5680 6.128769 CGTTACGATCTCATAGTTCGATCTCT 60.129 42.308 12.82 0.00 39.16 3.10
3214 5681 6.010675 CGTTACGATCTCATAGTTCGATCTC 58.989 44.000 12.82 0.00 39.16 2.75
3215 5682 5.695363 TCGTTACGATCTCATAGTTCGATCT 59.305 40.000 2.33 0.97 39.16 2.75
3216 5683 5.913637 TCGTTACGATCTCATAGTTCGATC 58.086 41.667 2.33 0.00 39.16 3.69
3217 5684 5.615106 GCTCGTTACGATCTCATAGTTCGAT 60.615 44.000 8.21 2.56 39.16 3.59
3218 5685 4.318618 GCTCGTTACGATCTCATAGTTCGA 60.319 45.833 8.21 0.00 39.16 3.71
3219 5686 3.901290 GCTCGTTACGATCTCATAGTTCG 59.099 47.826 8.21 5.98 41.68 3.95
3220 5687 5.098218 AGCTCGTTACGATCTCATAGTTC 57.902 43.478 8.21 0.00 34.61 3.01
3221 5688 5.526479 TGTAGCTCGTTACGATCTCATAGTT 59.474 40.000 14.40 0.00 34.25 2.24
3222 5689 5.055144 TGTAGCTCGTTACGATCTCATAGT 58.945 41.667 14.40 0.00 34.25 2.12
3223 5690 5.405873 TCTGTAGCTCGTTACGATCTCATAG 59.594 44.000 14.40 11.12 34.25 2.23
3224 5691 5.295152 TCTGTAGCTCGTTACGATCTCATA 58.705 41.667 14.40 3.90 34.25 2.15
3225 5692 4.127907 TCTGTAGCTCGTTACGATCTCAT 58.872 43.478 14.40 0.00 34.25 2.90
3226 5693 3.528532 TCTGTAGCTCGTTACGATCTCA 58.471 45.455 14.40 11.19 34.25 3.27
3227 5694 4.735662 ATCTGTAGCTCGTTACGATCTC 57.264 45.455 14.40 7.55 34.25 2.75
3228 5695 6.428799 GTTTATCTGTAGCTCGTTACGATCT 58.571 40.000 15.27 15.27 36.35 2.75
3229 5696 5.624491 GGTTTATCTGTAGCTCGTTACGATC 59.376 44.000 8.21 3.83 34.61 3.69
3230 5697 5.517904 GGTTTATCTGTAGCTCGTTACGAT 58.482 41.667 8.21 0.00 34.61 3.73
3231 5698 4.494690 CGGTTTATCTGTAGCTCGTTACGA 60.495 45.833 7.39 7.39 0.00 3.43
3232 5699 3.722780 CGGTTTATCTGTAGCTCGTTACG 59.277 47.826 0.00 0.00 0.00 3.18
3233 5700 4.666237 ACGGTTTATCTGTAGCTCGTTAC 58.334 43.478 0.00 0.00 33.34 2.50
3234 5701 4.970662 ACGGTTTATCTGTAGCTCGTTA 57.029 40.909 0.00 0.00 33.34 3.18
3235 5702 3.863142 ACGGTTTATCTGTAGCTCGTT 57.137 42.857 0.00 0.00 33.34 3.85
3236 5703 5.511234 AATACGGTTTATCTGTAGCTCGT 57.489 39.130 0.00 0.00 40.66 4.18
3237 5704 6.914215 TGTAAATACGGTTTATCTGTAGCTCG 59.086 38.462 0.00 0.00 40.66 5.03
3238 5705 8.538039 GTTGTAAATACGGTTTATCTGTAGCTC 58.462 37.037 0.00 0.00 40.66 4.09
3239 5706 7.493645 GGTTGTAAATACGGTTTATCTGTAGCT 59.506 37.037 0.00 0.00 40.66 3.32
3240 5707 7.278424 TGGTTGTAAATACGGTTTATCTGTAGC 59.722 37.037 0.00 0.00 40.66 3.58
3241 5708 8.706492 TGGTTGTAAATACGGTTTATCTGTAG 57.294 34.615 0.00 0.00 40.66 2.74
3242 5709 8.934825 GTTGGTTGTAAATACGGTTTATCTGTA 58.065 33.333 0.00 0.00 41.43 2.74
3243 5710 7.360269 CGTTGGTTGTAAATACGGTTTATCTGT 60.360 37.037 0.00 0.00 39.26 3.41
3244 5711 6.957077 CGTTGGTTGTAAATACGGTTTATCTG 59.043 38.462 0.00 0.00 0.00 2.90
3245 5712 6.873076 TCGTTGGTTGTAAATACGGTTTATCT 59.127 34.615 0.00 0.00 31.80 1.98
3246 5713 7.059448 TCGTTGGTTGTAAATACGGTTTATC 57.941 36.000 0.00 0.00 31.80 1.75
3247 5714 6.873076 TCTCGTTGGTTGTAAATACGGTTTAT 59.127 34.615 0.00 0.00 31.80 1.40
3248 5715 6.219473 TCTCGTTGGTTGTAAATACGGTTTA 58.781 36.000 0.00 0.00 31.80 2.01
3249 5716 5.055812 TCTCGTTGGTTGTAAATACGGTTT 58.944 37.500 0.00 0.00 31.80 3.27
3250 5717 4.630111 TCTCGTTGGTTGTAAATACGGTT 58.370 39.130 0.00 0.00 31.80 4.44
3251 5718 4.255833 TCTCGTTGGTTGTAAATACGGT 57.744 40.909 0.00 0.00 31.80 4.83
3252 5719 7.115378 GGTATATCTCGTTGGTTGTAAATACGG 59.885 40.741 0.00 0.00 31.80 4.02
3253 5720 7.648908 TGGTATATCTCGTTGGTTGTAAATACG 59.351 37.037 0.00 0.00 32.03 3.06
3254 5721 8.876275 TGGTATATCTCGTTGGTTGTAAATAC 57.124 34.615 0.00 0.00 0.00 1.89
3256 5723 9.485206 GTATGGTATATCTCGTTGGTTGTAAAT 57.515 33.333 0.00 0.00 0.00 1.40
3257 5724 8.698210 AGTATGGTATATCTCGTTGGTTGTAAA 58.302 33.333 0.00 0.00 0.00 2.01
3258 5725 8.241497 AGTATGGTATATCTCGTTGGTTGTAA 57.759 34.615 0.00 0.00 0.00 2.41
3259 5726 7.828508 AGTATGGTATATCTCGTTGGTTGTA 57.171 36.000 0.00 0.00 0.00 2.41
3260 5727 6.726490 AGTATGGTATATCTCGTTGGTTGT 57.274 37.500 0.00 0.00 0.00 3.32
3265 5732 9.228949 AGGTAGTTAGTATGGTATATCTCGTTG 57.771 37.037 0.00 0.00 0.00 4.10
3312 5785 9.521841 TGAGGGTGTATGTTAAACAAATGAATA 57.478 29.630 0.00 0.00 0.00 1.75
3317 5790 8.303876 GTGATTGAGGGTGTATGTTAAACAAAT 58.696 33.333 0.00 0.00 0.00 2.32
3332 5805 1.774254 TGTCTGGTTGTGATTGAGGGT 59.226 47.619 0.00 0.00 0.00 4.34
3373 5846 7.373778 AGGAATACAACAACTTCGGTTATTC 57.626 36.000 0.00 0.00 36.26 1.75
3429 5902 6.986817 GGAGATTCGATTCATTCCTACTCAAA 59.013 38.462 9.78 0.00 0.00 2.69
3506 5980 1.197036 GTTTCAAGCACGGACTAAGCC 59.803 52.381 0.00 0.00 0.00 4.35
3552 6672 1.568606 CTCATCACCATCAGCTGTCG 58.431 55.000 14.67 5.87 0.00 4.35
3560 6680 3.189618 TGTCATGAGCTCATCACCATC 57.810 47.619 25.61 13.17 41.91 3.51
3562 6682 3.639672 ATTGTCATGAGCTCATCACCA 57.360 42.857 25.61 16.88 41.91 4.17
3605 6725 9.573133 CAATTCTGGTGGAGTCATTATTTTTAC 57.427 33.333 0.00 0.00 0.00 2.01
3626 6746 8.503196 TGATACATCACTGTTTGTGTACAATTC 58.497 33.333 0.00 0.00 46.27 2.17
3656 6776 0.322456 TTGGGTTTCATGCCCTCTCG 60.322 55.000 8.20 0.00 46.22 4.04
3672 6793 1.622811 AGCTCCAGACTCAAGAGTTGG 59.377 52.381 17.74 17.74 42.66 3.77
3707 6828 2.828877 CTTAAATATCCGGGCGTCACA 58.171 47.619 0.00 0.00 0.00 3.58
3708 6829 1.529865 GCTTAAATATCCGGGCGTCAC 59.470 52.381 0.00 0.00 0.00 3.67
3709 6830 1.414919 AGCTTAAATATCCGGGCGTCA 59.585 47.619 0.00 0.00 0.00 4.35
3710 6831 2.165319 AGCTTAAATATCCGGGCGTC 57.835 50.000 0.00 0.00 0.00 5.19
3711 6832 2.366266 TGTAGCTTAAATATCCGGGCGT 59.634 45.455 0.00 0.00 0.00 5.68
3712 6833 2.993899 CTGTAGCTTAAATATCCGGGCG 59.006 50.000 0.00 0.00 0.00 6.13
3713 6834 3.746492 CACTGTAGCTTAAATATCCGGGC 59.254 47.826 0.00 0.00 0.00 6.13
3714 6835 5.209818 TCACTGTAGCTTAAATATCCGGG 57.790 43.478 0.00 0.00 0.00 5.73
3715 6836 6.761714 AGTTTCACTGTAGCTTAAATATCCGG 59.238 38.462 0.00 0.00 0.00 5.14
3716 6837 7.707035 AGAGTTTCACTGTAGCTTAAATATCCG 59.293 37.037 0.00 0.00 0.00 4.18
3717 6838 8.821894 CAGAGTTTCACTGTAGCTTAAATATCC 58.178 37.037 0.00 0.00 0.00 2.59
3718 6839 8.331742 GCAGAGTTTCACTGTAGCTTAAATATC 58.668 37.037 0.00 0.00 37.64 1.63
3719 6840 8.043710 AGCAGAGTTTCACTGTAGCTTAAATAT 58.956 33.333 0.00 0.00 37.64 1.28
3720 6841 7.386851 AGCAGAGTTTCACTGTAGCTTAAATA 58.613 34.615 0.00 0.00 37.64 1.40
3721 6842 6.234177 AGCAGAGTTTCACTGTAGCTTAAAT 58.766 36.000 0.00 0.00 37.64 1.40
3722 6843 5.611374 AGCAGAGTTTCACTGTAGCTTAAA 58.389 37.500 0.00 0.00 37.64 1.52
3723 6844 5.215252 AGCAGAGTTTCACTGTAGCTTAA 57.785 39.130 0.00 0.00 37.64 1.85
3724 6845 4.873746 AGCAGAGTTTCACTGTAGCTTA 57.126 40.909 0.00 0.00 37.64 3.09
3725 6846 3.760580 AGCAGAGTTTCACTGTAGCTT 57.239 42.857 0.00 0.00 37.64 3.74
3726 6847 4.873746 TTAGCAGAGTTTCACTGTAGCT 57.126 40.909 0.00 0.00 37.64 3.32
3727 6848 5.171476 TCATTAGCAGAGTTTCACTGTAGC 58.829 41.667 0.00 0.00 37.64 3.58
3728 6849 6.815641 ACATCATTAGCAGAGTTTCACTGTAG 59.184 38.462 0.00 0.00 37.64 2.74
3729 6850 6.701340 ACATCATTAGCAGAGTTTCACTGTA 58.299 36.000 0.00 0.00 37.64 2.74
3730 6851 5.555017 ACATCATTAGCAGAGTTTCACTGT 58.445 37.500 0.00 0.00 37.64 3.55
3731 6852 5.640783 TGACATCATTAGCAGAGTTTCACTG 59.359 40.000 0.00 0.00 38.27 3.66
3732 6853 5.641209 GTGACATCATTAGCAGAGTTTCACT 59.359 40.000 0.00 0.00 0.00 3.41
3733 6854 5.445142 CGTGACATCATTAGCAGAGTTTCAC 60.445 44.000 0.00 0.00 0.00 3.18
3734 6855 4.627035 CGTGACATCATTAGCAGAGTTTCA 59.373 41.667 0.00 0.00 0.00 2.69
3735 6856 4.493220 GCGTGACATCATTAGCAGAGTTTC 60.493 45.833 0.00 0.00 0.00 2.78
3736 6857 3.372206 GCGTGACATCATTAGCAGAGTTT 59.628 43.478 0.00 0.00 0.00 2.66
3737 6858 2.932614 GCGTGACATCATTAGCAGAGTT 59.067 45.455 0.00 0.00 0.00 3.01
3738 6859 2.544685 GCGTGACATCATTAGCAGAGT 58.455 47.619 0.00 0.00 0.00 3.24
3739 6860 1.863454 GGCGTGACATCATTAGCAGAG 59.137 52.381 8.48 0.00 0.00 3.35
3740 6861 1.206849 TGGCGTGACATCATTAGCAGA 59.793 47.619 8.48 0.00 0.00 4.26
3741 6862 1.328680 GTGGCGTGACATCATTAGCAG 59.671 52.381 8.48 0.00 0.00 4.24
3742 6863 1.368641 GTGGCGTGACATCATTAGCA 58.631 50.000 8.48 0.00 0.00 3.49
3743 6864 0.657840 GGTGGCGTGACATCATTAGC 59.342 55.000 0.00 0.00 0.00 3.09
3744 6865 2.205074 GAGGTGGCGTGACATCATTAG 58.795 52.381 0.00 0.00 0.00 1.73
3745 6866 1.134521 GGAGGTGGCGTGACATCATTA 60.135 52.381 3.62 0.00 0.00 1.90
3746 6867 0.392998 GGAGGTGGCGTGACATCATT 60.393 55.000 3.62 0.00 0.00 2.57
3747 6868 1.221840 GGAGGTGGCGTGACATCAT 59.778 57.895 3.62 0.00 0.00 2.45
3748 6869 2.662596 GGAGGTGGCGTGACATCA 59.337 61.111 3.62 0.00 0.00 3.07
3749 6870 2.509336 CGGAGGTGGCGTGACATC 60.509 66.667 0.00 0.00 0.00 3.06
3750 6871 1.537814 TAACGGAGGTGGCGTGACAT 61.538 55.000 0.00 0.00 0.00 3.06
3751 6872 2.201708 TAACGGAGGTGGCGTGACA 61.202 57.895 0.00 0.00 0.00 3.58
3752 6873 1.735559 GTAACGGAGGTGGCGTGAC 60.736 63.158 0.00 0.00 0.00 3.67
3753 6874 1.904865 AGTAACGGAGGTGGCGTGA 60.905 57.895 0.00 0.00 0.00 4.35
3754 6875 1.736645 CAGTAACGGAGGTGGCGTG 60.737 63.158 0.00 0.00 0.00 5.34
3755 6876 1.751349 AACAGTAACGGAGGTGGCGT 61.751 55.000 0.00 0.00 0.00 5.68
3756 6877 1.005394 AACAGTAACGGAGGTGGCG 60.005 57.895 0.00 0.00 0.00 5.69
3757 6878 1.574702 GCAACAGTAACGGAGGTGGC 61.575 60.000 0.00 0.00 0.00 5.01
3758 6879 0.953960 GGCAACAGTAACGGAGGTGG 60.954 60.000 0.00 0.00 0.00 4.61
3759 6880 0.250124 TGGCAACAGTAACGGAGGTG 60.250 55.000 0.00 0.00 46.17 4.00
3760 6881 2.138595 TGGCAACAGTAACGGAGGT 58.861 52.632 0.00 0.00 46.17 3.85
3770 6891 7.124793 CGAACTAACGAGAGATTGGCAACAG 62.125 48.000 0.00 0.00 41.55 3.16
3771 6892 5.378671 CGAACTAACGAGAGATTGGCAACA 61.379 45.833 0.00 0.00 39.58 3.33
3772 6893 3.060895 CGAACTAACGAGAGATTGGCAAC 59.939 47.826 0.00 0.00 35.09 4.17
3773 6894 3.057104 TCGAACTAACGAGAGATTGGCAA 60.057 43.478 0.68 0.68 37.37 4.52
3774 6895 2.490509 TCGAACTAACGAGAGATTGGCA 59.509 45.455 0.00 0.00 37.37 4.92
3775 6896 3.146618 TCGAACTAACGAGAGATTGGC 57.853 47.619 0.00 0.00 37.37 4.52
3776 6897 6.455646 CCAATTTCGAACTAACGAGAGATTGG 60.456 42.308 13.52 13.52 43.33 3.16
3777 6898 6.090898 ACCAATTTCGAACTAACGAGAGATTG 59.909 38.462 0.00 1.14 43.04 2.67
3778 6899 6.164176 ACCAATTTCGAACTAACGAGAGATT 58.836 36.000 0.00 0.00 43.04 2.40
3779 6900 5.721232 ACCAATTTCGAACTAACGAGAGAT 58.279 37.500 0.00 0.00 43.04 2.75
3780 6901 5.130292 ACCAATTTCGAACTAACGAGAGA 57.870 39.130 0.00 0.00 43.04 3.10
3781 6902 5.404366 TGAACCAATTTCGAACTAACGAGAG 59.596 40.000 0.00 0.00 43.04 3.20
3782 6903 5.291178 TGAACCAATTTCGAACTAACGAGA 58.709 37.500 0.00 0.00 43.04 4.04
3783 6904 5.585500 TGAACCAATTTCGAACTAACGAG 57.415 39.130 0.00 0.00 43.04 4.18
3784 6905 5.987777 TTGAACCAATTTCGAACTAACGA 57.012 34.783 0.00 0.00 36.97 3.85
3785 6906 7.439204 TTTTTGAACCAATTTCGAACTAACG 57.561 32.000 0.00 0.00 37.33 3.18
3786 6907 9.026074 TGATTTTTGAACCAATTTCGAACTAAC 57.974 29.630 0.00 0.00 37.33 2.34
3787 6908 9.587772 TTGATTTTTGAACCAATTTCGAACTAA 57.412 25.926 0.00 0.00 37.33 2.24
3788 6909 9.587772 TTTGATTTTTGAACCAATTTCGAACTA 57.412 25.926 0.00 0.00 37.33 2.24
3789 6910 8.485976 TTTGATTTTTGAACCAATTTCGAACT 57.514 26.923 0.00 0.00 37.33 3.01
3790 6911 9.715123 AATTTGATTTTTGAACCAATTTCGAAC 57.285 25.926 0.00 0.00 37.33 3.95
3791 6912 9.928236 GAATTTGATTTTTGAACCAATTTCGAA 57.072 25.926 0.00 0.00 36.97 3.71
3792 6913 9.102757 TGAATTTGATTTTTGAACCAATTTCGA 57.897 25.926 0.00 0.00 36.97 3.71
3793 6914 9.713740 TTGAATTTGATTTTTGAACCAATTTCG 57.286 25.926 0.00 0.00 36.97 3.46
3798 6919 9.224267 TGACTTTGAATTTGATTTTTGAACCAA 57.776 25.926 0.00 0.00 0.00 3.67
3799 6920 8.663911 GTGACTTTGAATTTGATTTTTGAACCA 58.336 29.630 0.00 0.00 0.00 3.67
3800 6921 7.845622 CGTGACTTTGAATTTGATTTTTGAACC 59.154 33.333 0.00 0.00 0.00 3.62
3801 6922 7.845622 CCGTGACTTTGAATTTGATTTTTGAAC 59.154 33.333 0.00 0.00 0.00 3.18
3802 6923 7.465245 GCCGTGACTTTGAATTTGATTTTTGAA 60.465 33.333 0.00 0.00 0.00 2.69
3803 6924 6.019156 GCCGTGACTTTGAATTTGATTTTTGA 60.019 34.615 0.00 0.00 0.00 2.69
3804 6925 6.128729 GCCGTGACTTTGAATTTGATTTTTG 58.871 36.000 0.00 0.00 0.00 2.44
3805 6926 5.814705 TGCCGTGACTTTGAATTTGATTTTT 59.185 32.000 0.00 0.00 0.00 1.94
3806 6927 5.355596 TGCCGTGACTTTGAATTTGATTTT 58.644 33.333 0.00 0.00 0.00 1.82
3807 6928 4.942852 TGCCGTGACTTTGAATTTGATTT 58.057 34.783 0.00 0.00 0.00 2.17
3808 6929 4.582701 TGCCGTGACTTTGAATTTGATT 57.417 36.364 0.00 0.00 0.00 2.57
3809 6930 4.582701 TTGCCGTGACTTTGAATTTGAT 57.417 36.364 0.00 0.00 0.00 2.57
3810 6931 4.109050 GTTTGCCGTGACTTTGAATTTGA 58.891 39.130 0.00 0.00 0.00 2.69
3811 6932 3.862267 TGTTTGCCGTGACTTTGAATTTG 59.138 39.130 0.00 0.00 0.00 2.32
3812 6933 4.116747 TGTTTGCCGTGACTTTGAATTT 57.883 36.364 0.00 0.00 0.00 1.82
3813 6934 3.791973 TGTTTGCCGTGACTTTGAATT 57.208 38.095 0.00 0.00 0.00 2.17
3814 6935 3.791973 TTGTTTGCCGTGACTTTGAAT 57.208 38.095 0.00 0.00 0.00 2.57
3815 6936 3.791973 ATTGTTTGCCGTGACTTTGAA 57.208 38.095 0.00 0.00 0.00 2.69
3816 6937 4.902443 TTATTGTTTGCCGTGACTTTGA 57.098 36.364 0.00 0.00 0.00 2.69
3817 6938 5.518487 ACTTTTATTGTTTGCCGTGACTTTG 59.482 36.000 0.00 0.00 0.00 2.77
3818 6939 5.656480 ACTTTTATTGTTTGCCGTGACTTT 58.344 33.333 0.00 0.00 0.00 2.66
3819 6940 5.257082 ACTTTTATTGTTTGCCGTGACTT 57.743 34.783 0.00 0.00 0.00 3.01
3820 6941 4.911514 ACTTTTATTGTTTGCCGTGACT 57.088 36.364 0.00 0.00 0.00 3.41
3821 6942 5.959652 AAACTTTTATTGTTTGCCGTGAC 57.040 34.783 0.00 0.00 36.43 3.67
3822 6943 6.100004 TGAAAACTTTTATTGTTTGCCGTGA 58.900 32.000 0.00 0.00 37.64 4.35
3823 6944 6.337853 TGAAAACTTTTATTGTTTGCCGTG 57.662 33.333 0.00 0.00 37.64 4.94
3824 6945 6.969828 TTGAAAACTTTTATTGTTTGCCGT 57.030 29.167 0.00 0.00 37.64 5.68
3825 6946 7.460296 AGTTTGAAAACTTTTATTGTTTGCCG 58.540 30.769 2.56 0.00 46.52 5.69
3847 6968 9.511144 CACTCCGAACATTTTAGTTTTAAAGTT 57.489 29.630 0.00 0.00 30.84 2.66
3848 6969 8.680001 ACACTCCGAACATTTTAGTTTTAAAGT 58.320 29.630 0.00 0.00 30.84 2.66
3849 6970 8.953990 CACACTCCGAACATTTTAGTTTTAAAG 58.046 33.333 0.00 0.00 30.84 1.85
3850 6971 7.432838 GCACACTCCGAACATTTTAGTTTTAAA 59.567 33.333 0.00 0.00 0.00 1.52
3851 6972 6.913673 GCACACTCCGAACATTTTAGTTTTAA 59.086 34.615 0.00 0.00 0.00 1.52
3852 6973 6.432107 GCACACTCCGAACATTTTAGTTTTA 58.568 36.000 0.00 0.00 0.00 1.52
3853 6974 5.278604 GCACACTCCGAACATTTTAGTTTT 58.721 37.500 0.00 0.00 0.00 2.43
3854 6975 4.261447 GGCACACTCCGAACATTTTAGTTT 60.261 41.667 0.00 0.00 0.00 2.66
3855 6976 3.252458 GGCACACTCCGAACATTTTAGTT 59.748 43.478 0.00 0.00 0.00 2.24
3856 6977 2.812011 GGCACACTCCGAACATTTTAGT 59.188 45.455 0.00 0.00 0.00 2.24
3857 6978 2.811431 TGGCACACTCCGAACATTTTAG 59.189 45.455 0.00 0.00 0.00 1.85
3858 6979 2.852449 TGGCACACTCCGAACATTTTA 58.148 42.857 0.00 0.00 0.00 1.52
3859 6980 1.686355 TGGCACACTCCGAACATTTT 58.314 45.000 0.00 0.00 0.00 1.82
3860 6981 1.686355 TTGGCACACTCCGAACATTT 58.314 45.000 0.00 0.00 39.29 2.32
3861 6982 1.686355 TTTGGCACACTCCGAACATT 58.314 45.000 0.00 0.00 39.29 2.71
3862 6983 1.909700 ATTTGGCACACTCCGAACAT 58.090 45.000 0.00 0.00 39.29 2.71
3863 6984 2.552599 TATTTGGCACACTCCGAACA 57.447 45.000 0.00 0.00 39.29 3.18
3864 6985 3.758300 CATTATTTGGCACACTCCGAAC 58.242 45.455 0.00 0.00 39.29 3.95
3865 6986 2.163412 GCATTATTTGGCACACTCCGAA 59.837 45.455 0.00 0.00 39.29 4.30
3866 6987 1.742831 GCATTATTTGGCACACTCCGA 59.257 47.619 0.00 0.00 39.29 4.55
3867 6988 2.193306 GCATTATTTGGCACACTCCG 57.807 50.000 0.00 0.00 39.29 4.63
3882 7003 9.487442 TTCCTTCACCTAAAATATTTAGGCATT 57.513 29.630 22.66 6.71 44.13 3.56
3883 7004 9.487442 TTTCCTTCACCTAAAATATTTAGGCAT 57.513 29.630 22.66 7.30 44.13 4.40
3884 7005 8.745590 GTTTCCTTCACCTAAAATATTTAGGCA 58.254 33.333 22.66 11.23 44.13 4.75
3885 7006 8.745590 TGTTTCCTTCACCTAAAATATTTAGGC 58.254 33.333 22.66 8.72 44.13 3.93
3894 7015 9.589111 GTAAAATTGTGTTTCCTTCACCTAAAA 57.411 29.630 0.00 0.00 35.25 1.52
3895 7016 8.750298 TGTAAAATTGTGTTTCCTTCACCTAAA 58.250 29.630 0.00 0.00 35.25 1.85
3896 7017 8.294954 TGTAAAATTGTGTTTCCTTCACCTAA 57.705 30.769 0.00 0.00 35.25 2.69
3897 7018 7.776030 TCTGTAAAATTGTGTTTCCTTCACCTA 59.224 33.333 0.00 0.00 35.25 3.08
3898 7019 6.605594 TCTGTAAAATTGTGTTTCCTTCACCT 59.394 34.615 0.00 0.00 35.25 4.00
3899 7020 6.801575 TCTGTAAAATTGTGTTTCCTTCACC 58.198 36.000 0.00 0.00 35.25 4.02
3900 7021 8.755018 CATTCTGTAAAATTGTGTTTCCTTCAC 58.245 33.333 0.00 0.00 36.48 3.18
3901 7022 7.437862 GCATTCTGTAAAATTGTGTTTCCTTCA 59.562 33.333 0.00 0.00 0.00 3.02
3902 7023 7.095649 GGCATTCTGTAAAATTGTGTTTCCTTC 60.096 37.037 0.00 0.00 0.00 3.46
3903 7024 6.705825 GGCATTCTGTAAAATTGTGTTTCCTT 59.294 34.615 0.00 0.00 0.00 3.36
3904 7025 6.041979 AGGCATTCTGTAAAATTGTGTTTCCT 59.958 34.615 0.00 0.00 0.00 3.36
3905 7026 6.223120 AGGCATTCTGTAAAATTGTGTTTCC 58.777 36.000 0.00 0.00 0.00 3.13
3906 7027 8.810652 TTAGGCATTCTGTAAAATTGTGTTTC 57.189 30.769 0.00 0.00 0.00 2.78
3907 7028 9.777297 ATTTAGGCATTCTGTAAAATTGTGTTT 57.223 25.926 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.