Multiple sequence alignment - TraesCS3D01G225400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G225400 chr3D 100.000 3165 0 0 1 3165 306519299 306516135 0.000000e+00 5845.0
1 TraesCS3D01G225400 chr3D 86.876 541 69 2 368 907 551400862 551400323 3.490000e-169 604.0
2 TraesCS3D01G225400 chr3D 82.775 627 101 6 1182 1806 306511544 306510923 1.280000e-153 553.0
3 TraesCS3D01G225400 chr3D 83.748 603 75 16 380 960 81380236 81380837 1.660000e-152 549.0
4 TraesCS3D01G225400 chr3D 86.268 284 24 11 160 439 170792685 170792957 8.590000e-76 294.0
5 TraesCS3D01G225400 chr3D 92.857 154 9 2 1 152 312168082 312167929 4.110000e-54 222.0
6 TraesCS3D01G225400 chr3D 87.302 126 14 2 167 292 540358259 540358382 3.290000e-30 143.0
7 TraesCS3D01G225400 chr3A 92.402 2277 109 23 927 3165 425242384 425240134 0.000000e+00 3188.0
8 TraesCS3D01G225400 chr3A 94.126 698 40 1 153 850 425244065 425243369 0.000000e+00 1061.0
9 TraesCS3D01G225400 chr3A 82.166 628 103 8 1182 1806 425218810 425218189 6.010000e-147 531.0
10 TraesCS3D01G225400 chr3B 89.488 1522 108 21 937 2434 414474329 414475822 0.000000e+00 1877.0
11 TraesCS3D01G225400 chr3B 92.109 735 52 3 2432 3165 414476740 414477469 0.000000e+00 1031.0
12 TraesCS3D01G225400 chr3B 89.661 619 63 1 150 767 414469908 414470526 0.000000e+00 787.0
13 TraesCS3D01G225400 chr3B 82.999 747 104 19 165 903 792874783 792875514 0.000000e+00 654.0
14 TraesCS3D01G225400 chr3B 81.967 610 105 4 1182 1790 414485462 414486067 2.180000e-141 512.0
15 TraesCS3D01G225400 chr4A 83.867 750 98 18 164 907 448773683 448774415 0.000000e+00 693.0
16 TraesCS3D01G225400 chr4A 83.468 744 106 13 156 895 730201290 730202020 0.000000e+00 676.0
17 TraesCS3D01G225400 chr2D 83.289 760 108 14 155 907 343445284 343444537 0.000000e+00 682.0
18 TraesCS3D01G225400 chr2D 87.638 542 64 3 368 907 187649749 187649209 7.450000e-176 627.0
19 TraesCS3D01G225400 chr2D 87.109 543 61 9 368 907 147952451 147952987 9.710000e-170 606.0
20 TraesCS3D01G225400 chr2D 83.133 166 22 4 2329 2488 449523407 449523242 2.540000e-31 147.0
21 TraesCS3D01G225400 chr7D 82.654 761 99 18 154 907 98048132 98047398 0.000000e+00 643.0
22 TraesCS3D01G225400 chr7D 83.390 295 39 3 169 463 529963168 529963452 6.730000e-67 265.0
23 TraesCS3D01G225400 chr7D 94.118 153 8 1 1 152 368573194 368573346 6.830000e-57 231.0
24 TraesCS3D01G225400 chr7D 75.735 408 72 20 2092 2488 19063192 19062801 2.510000e-41 180.0
25 TraesCS3D01G225400 chr5D 81.890 762 101 21 155 907 522497130 522496397 2.700000e-170 608.0
26 TraesCS3D01G225400 chr5D 83.108 296 40 5 168 463 41440812 41441097 8.710000e-66 261.0
27 TraesCS3D01G225400 chr7A 81.975 638 102 7 1161 1796 696905196 696904570 2.160000e-146 529.0
28 TraesCS3D01G225400 chr7A 87.097 279 27 1 161 439 49899777 49900046 1.100000e-79 307.0
29 TraesCS3D01G225400 chr7A 82.034 295 43 3 169 463 609438636 609438920 3.150000e-60 243.0
30 TraesCS3D01G225400 chr7A 93.464 153 9 1 1 152 128788322 128788474 3.180000e-55 226.0
31 TraesCS3D01G225400 chr4D 83.276 580 73 14 404 960 108817052 108816474 2.180000e-141 512.0
32 TraesCS3D01G225400 chr4D 93.464 153 9 1 1 152 101423649 101423801 3.180000e-55 226.0
33 TraesCS3D01G225400 chr6A 80.098 613 96 18 371 960 20927482 20926873 1.740000e-117 433.0
34 TraesCS3D01G225400 chr6A 92.810 153 10 1 1 152 157470732 157470580 1.480000e-53 220.0
35 TraesCS3D01G225400 chr5B 84.146 328 42 5 153 479 354504365 354504047 3.070000e-80 309.0
36 TraesCS3D01G225400 chr5B 94.118 153 8 1 1 152 529843805 529843957 6.830000e-57 231.0
37 TraesCS3D01G225400 chr5B 92.357 157 11 1 1 156 293222224 293222068 4.110000e-54 222.0
38 TraesCS3D01G225400 chr2B 82.935 293 40 4 169 461 479542893 479543175 4.050000e-64 255.0
39 TraesCS3D01G225400 chr2B 94.118 153 8 1 1 152 608530090 608530242 6.830000e-57 231.0
40 TraesCS3D01G225400 chr1D 92.810 153 9 2 1 152 346041580 346041429 1.480000e-53 220.0
41 TraesCS3D01G225400 chr6D 80.083 241 21 18 746 963 24590961 24591197 1.520000e-33 154.0
42 TraesCS3D01G225400 chr7B 76.211 227 42 8 2219 2435 434940228 434940004 3.340000e-20 110.0
43 TraesCS3D01G225400 chr1A 79.487 156 14 9 823 960 3764672 3764517 9.350000e-16 95.3
44 TraesCS3D01G225400 chr5A 90.741 54 4 1 908 960 504578496 504578549 1.570000e-08 71.3
45 TraesCS3D01G225400 chrUn 96.875 32 1 0 929 960 12091705 12091736 2.000000e-03 54.7
46 TraesCS3D01G225400 chrUn 96.875 32 1 0 929 960 144761221 144761252 2.000000e-03 54.7
47 TraesCS3D01G225400 chrUn 96.875 32 1 0 929 960 144798223 144798254 2.000000e-03 54.7
48 TraesCS3D01G225400 chrUn 96.875 32 1 0 929 960 144874359 144874390 2.000000e-03 54.7
49 TraesCS3D01G225400 chrUn 96.875 32 1 0 929 960 144912780 144912811 2.000000e-03 54.7
50 TraesCS3D01G225400 chrUn 96.875 32 1 0 929 960 144949868 144949899 2.000000e-03 54.7
51 TraesCS3D01G225400 chrUn 96.875 32 1 0 929 960 179838397 179838428 2.000000e-03 54.7
52 TraesCS3D01G225400 chrUn 96.875 32 1 0 929 960 179874992 179875023 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G225400 chr3D 306516135 306519299 3164 True 5845.000000 5845 100.000000 1 3165 1 chr3D.!!$R2 3164
1 TraesCS3D01G225400 chr3D 551400323 551400862 539 True 604.000000 604 86.876000 368 907 1 chr3D.!!$R4 539
2 TraesCS3D01G225400 chr3D 306510923 306511544 621 True 553.000000 553 82.775000 1182 1806 1 chr3D.!!$R1 624
3 TraesCS3D01G225400 chr3D 81380236 81380837 601 False 549.000000 549 83.748000 380 960 1 chr3D.!!$F1 580
4 TraesCS3D01G225400 chr3A 425240134 425244065 3931 True 2124.500000 3188 93.264000 153 3165 2 chr3A.!!$R2 3012
5 TraesCS3D01G225400 chr3A 425218189 425218810 621 True 531.000000 531 82.166000 1182 1806 1 chr3A.!!$R1 624
6 TraesCS3D01G225400 chr3B 414469908 414477469 7561 False 1231.666667 1877 90.419333 150 3165 3 chr3B.!!$F3 3015
7 TraesCS3D01G225400 chr3B 792874783 792875514 731 False 654.000000 654 82.999000 165 903 1 chr3B.!!$F2 738
8 TraesCS3D01G225400 chr3B 414485462 414486067 605 False 512.000000 512 81.967000 1182 1790 1 chr3B.!!$F1 608
9 TraesCS3D01G225400 chr4A 448773683 448774415 732 False 693.000000 693 83.867000 164 907 1 chr4A.!!$F1 743
10 TraesCS3D01G225400 chr4A 730201290 730202020 730 False 676.000000 676 83.468000 156 895 1 chr4A.!!$F2 739
11 TraesCS3D01G225400 chr2D 343444537 343445284 747 True 682.000000 682 83.289000 155 907 1 chr2D.!!$R2 752
12 TraesCS3D01G225400 chr2D 187649209 187649749 540 True 627.000000 627 87.638000 368 907 1 chr2D.!!$R1 539
13 TraesCS3D01G225400 chr2D 147952451 147952987 536 False 606.000000 606 87.109000 368 907 1 chr2D.!!$F1 539
14 TraesCS3D01G225400 chr7D 98047398 98048132 734 True 643.000000 643 82.654000 154 907 1 chr7D.!!$R2 753
15 TraesCS3D01G225400 chr5D 522496397 522497130 733 True 608.000000 608 81.890000 155 907 1 chr5D.!!$R1 752
16 TraesCS3D01G225400 chr7A 696904570 696905196 626 True 529.000000 529 81.975000 1161 1796 1 chr7A.!!$R1 635
17 TraesCS3D01G225400 chr4D 108816474 108817052 578 True 512.000000 512 83.276000 404 960 1 chr4D.!!$R1 556
18 TraesCS3D01G225400 chr6A 20926873 20927482 609 True 433.000000 433 80.098000 371 960 1 chr6A.!!$R1 589

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.038892 ACGACTACATCAACCGCGTT 60.039 50.0 4.92 0.0 0.00 4.84 F
81 82 0.178975 ATGCTCTCCCCCTCTCGTAG 60.179 60.0 0.00 0.0 0.00 3.51 F
151 152 0.387202 CCATGCAACGTTTCCCAACA 59.613 50.0 0.00 0.0 32.54 3.33 F
2032 6688 0.400213 TCAAAGGATTGTGGCGGAGT 59.600 50.0 0.00 0.0 37.79 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1672 6312 0.460987 GACCTTCTCCGTCATGCCAG 60.461 60.000 0.00 0.0 0.0 4.85 R
1700 6340 1.371558 GCCGTCCACTCCAAACTCT 59.628 57.895 0.00 0.0 0.0 3.24 R
2096 6752 0.946221 GTGTGACACCGAAGAGCCAG 60.946 60.000 3.92 0.0 0.0 4.85 R
2896 8494 2.674796 AAGTTCCGTAGATGGCAGTC 57.325 50.000 0.00 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.267188 TGTACGACTACATCAACCGC 57.733 50.000 0.00 0.00 0.00 5.68
20 21 1.186030 GTACGACTACATCAACCGCG 58.814 55.000 0.00 0.00 0.00 6.46
21 22 0.804364 TACGACTACATCAACCGCGT 59.196 50.000 4.92 0.00 0.00 6.01
22 23 0.038892 ACGACTACATCAACCGCGTT 60.039 50.000 4.92 0.00 0.00 4.84
23 24 0.365523 CGACTACATCAACCGCGTTG 59.634 55.000 4.92 10.14 43.99 4.10
39 40 3.944422 CGTTGATAAACGCCTATGCTT 57.056 42.857 1.55 0.00 39.43 3.91
41 42 5.006649 CGTTGATAAACGCCTATGCTTAG 57.993 43.478 1.55 0.00 39.43 2.18
42 43 4.608445 CGTTGATAAACGCCTATGCTTAGC 60.608 45.833 1.55 0.00 39.43 3.09
43 44 3.057019 TGATAAACGCCTATGCTTAGCG 58.943 45.455 16.25 16.25 34.43 4.26
44 45 2.875087 TAAACGCCTATGCTTAGCGA 57.125 45.000 21.33 0.00 32.73 4.93
45 46 2.018542 AAACGCCTATGCTTAGCGAA 57.981 45.000 21.33 0.00 32.73 4.70
46 47 1.287425 AACGCCTATGCTTAGCGAAC 58.713 50.000 21.33 4.66 32.73 3.95
47 48 0.460311 ACGCCTATGCTTAGCGAACT 59.540 50.000 21.33 5.45 32.73 3.01
48 49 1.134788 ACGCCTATGCTTAGCGAACTT 60.135 47.619 21.33 5.20 32.73 2.66
49 50 1.523095 CGCCTATGCTTAGCGAACTTC 59.477 52.381 14.07 0.00 34.43 3.01
50 51 2.550978 GCCTATGCTTAGCGAACTTCA 58.449 47.619 0.00 0.00 33.53 3.02
51 52 2.936498 GCCTATGCTTAGCGAACTTCAA 59.064 45.455 0.00 0.00 33.53 2.69
52 53 3.001736 GCCTATGCTTAGCGAACTTCAAG 59.998 47.826 0.00 0.00 33.53 3.02
53 54 3.557595 CCTATGCTTAGCGAACTTCAAGG 59.442 47.826 0.00 0.00 0.00 3.61
54 55 1.808411 TGCTTAGCGAACTTCAAGGG 58.192 50.000 0.00 0.00 0.00 3.95
55 56 1.071699 TGCTTAGCGAACTTCAAGGGT 59.928 47.619 0.00 0.00 0.00 4.34
56 57 2.300723 TGCTTAGCGAACTTCAAGGGTA 59.699 45.455 0.00 0.00 0.00 3.69
57 58 3.055385 TGCTTAGCGAACTTCAAGGGTAT 60.055 43.478 0.00 0.00 0.00 2.73
58 59 3.309954 GCTTAGCGAACTTCAAGGGTATG 59.690 47.826 0.00 0.00 0.00 2.39
59 60 4.755411 CTTAGCGAACTTCAAGGGTATGA 58.245 43.478 0.00 0.00 0.00 2.15
60 61 3.695830 AGCGAACTTCAAGGGTATGAA 57.304 42.857 0.00 0.00 37.70 2.57
69 70 4.679373 TCAAGGGTATGAAGATGCTCTC 57.321 45.455 0.00 0.00 0.00 3.20
70 71 3.389329 TCAAGGGTATGAAGATGCTCTCC 59.611 47.826 0.00 0.00 0.00 3.71
71 72 2.334023 AGGGTATGAAGATGCTCTCCC 58.666 52.381 0.00 0.00 0.00 4.30
72 73 1.349357 GGGTATGAAGATGCTCTCCCC 59.651 57.143 0.00 0.00 0.00 4.81
73 74 1.349357 GGTATGAAGATGCTCTCCCCC 59.651 57.143 0.00 0.00 0.00 5.40
74 75 2.334023 GTATGAAGATGCTCTCCCCCT 58.666 52.381 0.00 0.00 0.00 4.79
75 76 1.433121 ATGAAGATGCTCTCCCCCTC 58.567 55.000 0.00 0.00 0.00 4.30
76 77 0.341258 TGAAGATGCTCTCCCCCTCT 59.659 55.000 0.00 0.00 0.00 3.69
77 78 1.047801 GAAGATGCTCTCCCCCTCTC 58.952 60.000 0.00 0.00 0.00 3.20
78 79 0.758685 AAGATGCTCTCCCCCTCTCG 60.759 60.000 0.00 0.00 0.00 4.04
79 80 1.456705 GATGCTCTCCCCCTCTCGT 60.457 63.158 0.00 0.00 0.00 4.18
80 81 0.178987 GATGCTCTCCCCCTCTCGTA 60.179 60.000 0.00 0.00 0.00 3.43
81 82 0.178975 ATGCTCTCCCCCTCTCGTAG 60.179 60.000 0.00 0.00 0.00 3.51
82 83 2.197605 GCTCTCCCCCTCTCGTAGC 61.198 68.421 0.00 0.00 0.00 3.58
83 84 1.534697 CTCTCCCCCTCTCGTAGCT 59.465 63.158 0.00 0.00 0.00 3.32
84 85 0.766131 CTCTCCCCCTCTCGTAGCTA 59.234 60.000 0.00 0.00 0.00 3.32
85 86 1.353022 CTCTCCCCCTCTCGTAGCTAT 59.647 57.143 0.00 0.00 0.00 2.97
86 87 1.074084 TCTCCCCCTCTCGTAGCTATG 59.926 57.143 6.62 6.62 0.00 2.23
87 88 0.539901 TCCCCCTCTCGTAGCTATGC 60.540 60.000 8.17 0.00 0.00 3.14
88 89 0.827925 CCCCCTCTCGTAGCTATGCA 60.828 60.000 8.17 0.00 0.00 3.96
89 90 1.261480 CCCCTCTCGTAGCTATGCAT 58.739 55.000 8.17 3.79 0.00 3.96
90 91 1.203523 CCCCTCTCGTAGCTATGCATC 59.796 57.143 0.19 0.00 0.00 3.91
91 92 2.166829 CCCTCTCGTAGCTATGCATCT 58.833 52.381 0.19 0.00 0.00 2.90
92 93 2.163412 CCCTCTCGTAGCTATGCATCTC 59.837 54.545 0.19 0.00 0.00 2.75
93 94 2.163412 CCTCTCGTAGCTATGCATCTCC 59.837 54.545 0.19 0.00 0.00 3.71
94 95 2.816672 CTCTCGTAGCTATGCATCTCCA 59.183 50.000 0.19 0.00 0.00 3.86
95 96 3.425659 TCTCGTAGCTATGCATCTCCAT 58.574 45.455 0.19 0.00 0.00 3.41
96 97 3.192212 TCTCGTAGCTATGCATCTCCATG 59.808 47.826 0.19 0.00 0.00 3.66
97 98 3.157087 TCGTAGCTATGCATCTCCATGA 58.843 45.455 0.19 0.00 30.57 3.07
98 99 3.766051 TCGTAGCTATGCATCTCCATGAT 59.234 43.478 0.19 0.00 35.40 2.45
99 100 4.949856 TCGTAGCTATGCATCTCCATGATA 59.050 41.667 0.19 0.00 33.36 2.15
100 101 5.067023 TCGTAGCTATGCATCTCCATGATAG 59.933 44.000 0.19 0.00 33.36 2.08
101 102 5.067023 CGTAGCTATGCATCTCCATGATAGA 59.933 44.000 0.19 0.00 33.36 1.98
102 103 6.238981 CGTAGCTATGCATCTCCATGATAGAT 60.239 42.308 0.19 0.00 33.94 1.98
103 104 6.164417 AGCTATGCATCTCCATGATAGATC 57.836 41.667 0.19 0.00 31.22 2.75
104 105 5.900699 AGCTATGCATCTCCATGATAGATCT 59.099 40.000 0.19 0.00 31.22 2.75
105 106 6.384595 AGCTATGCATCTCCATGATAGATCTT 59.615 38.462 0.19 0.00 31.22 2.40
106 107 7.564292 AGCTATGCATCTCCATGATAGATCTTA 59.436 37.037 0.19 0.00 31.22 2.10
107 108 7.652909 GCTATGCATCTCCATGATAGATCTTAC 59.347 40.741 0.19 0.00 31.22 2.34
108 109 6.923199 TGCATCTCCATGATAGATCTTACA 57.077 37.500 0.00 2.00 31.22 2.41
109 110 7.492077 TGCATCTCCATGATAGATCTTACAT 57.508 36.000 0.00 4.52 31.22 2.29
110 111 7.328737 TGCATCTCCATGATAGATCTTACATG 58.671 38.462 23.26 23.26 39.51 3.21
111 112 7.038516 TGCATCTCCATGATAGATCTTACATGT 60.039 37.037 25.69 2.69 38.56 3.21
112 113 7.278203 GCATCTCCATGATAGATCTTACATGTG 59.722 40.741 25.69 20.93 38.56 3.21
113 114 6.695429 TCTCCATGATAGATCTTACATGTGC 58.305 40.000 25.69 0.00 38.56 4.57
114 115 5.473039 TCCATGATAGATCTTACATGTGCG 58.527 41.667 25.69 17.25 38.56 5.34
115 116 5.011023 TCCATGATAGATCTTACATGTGCGT 59.989 40.000 25.69 0.00 38.56 5.24
116 117 6.208599 TCCATGATAGATCTTACATGTGCGTA 59.791 38.462 25.69 12.64 38.56 4.42
117 118 6.529477 CCATGATAGATCTTACATGTGCGTAG 59.471 42.308 25.69 14.32 38.56 3.51
118 119 6.635030 TGATAGATCTTACATGTGCGTAGT 57.365 37.500 9.11 0.00 0.00 2.73
119 120 7.739498 TGATAGATCTTACATGTGCGTAGTA 57.261 36.000 9.11 0.00 0.00 1.82
120 121 8.161699 TGATAGATCTTACATGTGCGTAGTAA 57.838 34.615 9.11 0.00 0.00 2.24
121 122 8.793592 TGATAGATCTTACATGTGCGTAGTAAT 58.206 33.333 9.11 0.00 0.00 1.89
122 123 9.627395 GATAGATCTTACATGTGCGTAGTAATT 57.373 33.333 9.11 0.00 0.00 1.40
123 124 9.982651 ATAGATCTTACATGTGCGTAGTAATTT 57.017 29.630 9.11 0.00 0.00 1.82
124 125 8.718102 AGATCTTACATGTGCGTAGTAATTTT 57.282 30.769 9.11 0.00 0.00 1.82
125 126 9.162764 AGATCTTACATGTGCGTAGTAATTTTT 57.837 29.630 9.11 0.00 0.00 1.94
144 145 5.613358 TTTTTGTTTTCCATGCAACGTTT 57.387 30.435 0.00 0.00 0.00 3.60
145 146 4.849111 TTTGTTTTCCATGCAACGTTTC 57.151 36.364 0.00 0.00 0.00 2.78
146 147 2.815478 TGTTTTCCATGCAACGTTTCC 58.185 42.857 0.00 0.00 0.00 3.13
147 148 2.131972 GTTTTCCATGCAACGTTTCCC 58.868 47.619 0.00 0.00 0.00 3.97
148 149 1.403814 TTTCCATGCAACGTTTCCCA 58.596 45.000 0.00 0.00 0.00 4.37
151 152 0.387202 CCATGCAACGTTTCCCAACA 59.613 50.000 0.00 0.00 32.54 3.33
256 259 2.609183 ATCTACTCCGACAACCGCGC 62.609 60.000 0.00 0.00 36.84 6.86
344 362 1.677966 CCTCCGACTCCTCCGACAA 60.678 63.158 0.00 0.00 0.00 3.18
554 574 4.899239 GGCTCCATGGCGACCTCG 62.899 72.222 6.96 0.00 43.27 4.63
596 617 0.433492 GACATCAACCACGACGTTCG 59.567 55.000 0.00 0.00 46.93 3.95
608 630 1.472276 GACGTTCGTCGCATGGCTAG 61.472 60.000 9.50 0.00 44.19 3.42
639 662 1.532078 TACACCACCCACGCTCTCA 60.532 57.895 0.00 0.00 0.00 3.27
821 3036 1.990799 CGTTGTGACTGCGGAAGATA 58.009 50.000 0.00 0.00 0.00 1.98
909 5546 6.070021 ACTCCAAATTGATCATGTAGTCCAGA 60.070 38.462 0.00 0.00 0.00 3.86
931 5570 7.816031 CCAGACTCAAGCAATAAACAATGATTT 59.184 33.333 0.00 0.00 0.00 2.17
997 5636 2.933878 TTTCAACGACTGGCACCGCT 62.934 55.000 4.67 0.00 0.00 5.52
1151 5791 2.347490 GCCAGGAAACTCCGCAGA 59.653 61.111 0.00 0.00 42.75 4.26
1350 5990 5.712917 GTCTCCTTTCCTCTCGTATGGATAT 59.287 44.000 0.00 0.00 31.76 1.63
1700 6340 0.612174 CGGAGAAGGTCCTGAGGTCA 60.612 60.000 0.00 0.00 44.35 4.02
1861 6501 7.553881 TTATTAGAGTGCTGTTTGCCTAATC 57.446 36.000 0.00 0.00 42.00 1.75
1874 6514 4.808077 TGCCTAATCGTAGTTCTACTCG 57.192 45.455 8.11 0.00 0.00 4.18
1877 6517 5.994054 TGCCTAATCGTAGTTCTACTCGTAT 59.006 40.000 8.11 0.00 0.00 3.06
1878 6518 7.154656 TGCCTAATCGTAGTTCTACTCGTATA 58.845 38.462 8.11 0.00 0.00 1.47
1879 6519 7.657354 TGCCTAATCGTAGTTCTACTCGTATAA 59.343 37.037 8.11 0.00 0.00 0.98
1880 6520 8.663911 GCCTAATCGTAGTTCTACTCGTATAAT 58.336 37.037 8.11 0.00 0.00 1.28
2032 6688 0.400213 TCAAAGGATTGTGGCGGAGT 59.600 50.000 0.00 0.00 37.79 3.85
2051 6707 2.375509 AGTCCCCGAAAGAATTGAAGGT 59.624 45.455 0.00 0.00 0.00 3.50
2090 6746 8.641498 ATTTTAAGTGTCATCTTCTGGAACAT 57.359 30.769 0.00 0.00 38.20 2.71
2096 6752 6.373774 AGTGTCATCTTCTGGAACATGATTTC 59.626 38.462 0.00 0.00 38.20 2.17
2136 6792 8.094548 TCACACACCCTTATATGAATATAGCAC 58.905 37.037 0.00 0.00 0.00 4.40
2138 6794 8.097038 ACACACCCTTATATGAATATAGCACTG 58.903 37.037 0.00 0.00 0.00 3.66
2142 6798 9.950496 ACCCTTATATGAATATAGCACTGAAAG 57.050 33.333 0.00 0.00 42.29 2.62
2156 6812 7.849804 AGCACTGAAAGACATATTACGAAAT 57.150 32.000 0.00 0.00 37.43 2.17
2159 6815 9.982291 GCACTGAAAGACATATTACGAAATTTA 57.018 29.630 0.00 0.00 37.43 1.40
2215 6874 3.761752 GTGCCTGTTATACACCCATGTTT 59.238 43.478 0.00 0.00 40.48 2.83
2217 6876 5.065988 GTGCCTGTTATACACCCATGTTTAG 59.934 44.000 0.00 0.00 40.48 1.85
2225 6884 3.486383 ACACCCATGTTTAGTTCTGTGG 58.514 45.455 0.00 0.00 34.46 4.17
2236 6895 0.112412 GTTCTGTGGGGAATGGGTGT 59.888 55.000 0.00 0.00 0.00 4.16
2312 6974 6.985653 ACTAGATGTAACATATGCTGGACT 57.014 37.500 1.58 0.00 0.00 3.85
2326 6988 0.613260 TGGACTGTAATTCCTGCGCT 59.387 50.000 9.73 0.00 33.84 5.92
2327 6989 1.828595 TGGACTGTAATTCCTGCGCTA 59.171 47.619 9.73 0.00 33.84 4.26
2363 7025 2.905736 ACCCATTCCCCACAAAAATGAG 59.094 45.455 0.00 0.00 33.22 2.90
2367 7029 2.079170 TCCCCACAAAAATGAGCACA 57.921 45.000 0.00 0.00 0.00 4.57
2368 7030 2.607499 TCCCCACAAAAATGAGCACAT 58.393 42.857 0.00 0.00 38.50 3.21
2384 7046 1.135717 CACATGTGTACAATGGGCACG 60.136 52.381 18.03 0.43 36.04 5.34
2386 7048 0.037590 ATGTGTACAATGGGCACGGT 59.962 50.000 0.00 0.00 36.04 4.83
2398 7060 1.021968 GGCACGGTGGTTTCATATCC 58.978 55.000 10.60 0.00 0.00 2.59
2458 8048 3.650461 TGCTATTGTCATATAGGGGTGCA 59.350 43.478 0.00 0.00 0.00 4.57
2464 8054 1.994794 TCATATAGGGGTGCATGGCAT 59.005 47.619 0.00 0.00 41.91 4.40
2509 8101 6.380274 TCCCGTCATCTTATCCCTTATATGAC 59.620 42.308 0.00 0.00 35.25 3.06
2536 8128 5.508320 GCATGTTTCCGTTCTTTTAAAGGGA 60.508 40.000 4.77 1.28 40.46 4.20
2556 8150 8.777578 AAGGGAAAACAATAGGTAGTTCTTTT 57.222 30.769 0.00 0.00 0.00 2.27
2669 8265 9.741168 CAACAGAAACTAAATATGACGTTACAG 57.259 33.333 0.00 0.00 0.00 2.74
2680 8276 4.884458 TGACGTTACAGAATTTGCAACA 57.116 36.364 0.00 0.00 33.43 3.33
2714 8310 9.247126 CAACTTTAATTGTTTGATCATGTCACA 57.753 29.630 0.00 0.00 36.32 3.58
2774 8370 4.352001 CCCCATCTGATCCCTAAATCTTCA 59.648 45.833 0.00 0.00 0.00 3.02
2777 8373 7.008941 CCCATCTGATCCCTAAATCTTCAAAT 58.991 38.462 0.00 0.00 0.00 2.32
2779 8375 7.943447 CCATCTGATCCCTAAATCTTCAAATCT 59.057 37.037 0.00 0.00 0.00 2.40
2794 8390 5.411831 TCAAATCTATCCCCATCTGATCG 57.588 43.478 0.00 0.00 0.00 3.69
2838 8436 5.029650 TGATACATTGCTCGTTGTTGTTC 57.970 39.130 0.00 0.00 0.00 3.18
2839 8437 4.754618 TGATACATTGCTCGTTGTTGTTCT 59.245 37.500 0.00 0.00 0.00 3.01
2910 8508 1.244816 TATCGGACTGCCATCTACGG 58.755 55.000 0.00 0.00 0.00 4.02
2922 8520 6.946583 ACTGCCATCTACGGAACTTAGATATA 59.053 38.462 0.00 0.00 46.15 0.86
3048 8646 7.670009 TCCAAATTGCATTTCTTACAATTGG 57.330 32.000 10.83 0.00 41.78 3.16
3051 8649 9.165035 CCAAATTGCATTTCTTACAATTGGTAT 57.835 29.630 10.83 0.00 41.78 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.466192 CGCGGTTGATGTAGTCGTACA 60.466 52.381 0.00 0.00 43.43 2.90
2 3 0.804364 ACGCGGTTGATGTAGTCGTA 59.196 50.000 12.47 0.00 0.00 3.43
3 4 0.038892 AACGCGGTTGATGTAGTCGT 60.039 50.000 12.47 0.00 0.00 4.34
4 5 0.365523 CAACGCGGTTGATGTAGTCG 59.634 55.000 12.47 0.00 45.28 4.18
5 6 1.705256 TCAACGCGGTTGATGTAGTC 58.295 50.000 12.47 0.00 45.88 2.59
30 31 2.550978 TGAAGTTCGCTAAGCATAGGC 58.449 47.619 0.00 0.00 41.61 3.93
31 32 3.557595 CCTTGAAGTTCGCTAAGCATAGG 59.442 47.826 0.00 0.00 0.00 2.57
32 33 3.557595 CCCTTGAAGTTCGCTAAGCATAG 59.442 47.826 0.00 0.00 0.00 2.23
33 34 3.055385 ACCCTTGAAGTTCGCTAAGCATA 60.055 43.478 0.00 0.00 0.00 3.14
34 35 2.290323 ACCCTTGAAGTTCGCTAAGCAT 60.290 45.455 0.00 0.00 0.00 3.79
35 36 1.071699 ACCCTTGAAGTTCGCTAAGCA 59.928 47.619 0.00 0.00 0.00 3.91
36 37 1.809684 ACCCTTGAAGTTCGCTAAGC 58.190 50.000 0.00 0.00 0.00 3.09
37 38 4.755411 TCATACCCTTGAAGTTCGCTAAG 58.245 43.478 0.00 0.00 0.00 2.18
38 39 4.811969 TCATACCCTTGAAGTTCGCTAA 57.188 40.909 0.00 0.00 0.00 3.09
39 40 4.755411 CTTCATACCCTTGAAGTTCGCTA 58.245 43.478 6.12 0.00 44.90 4.26
40 41 3.600388 CTTCATACCCTTGAAGTTCGCT 58.400 45.455 6.12 0.00 44.90 4.93
61 62 0.178987 TACGAGAGGGGGAGAGCATC 60.179 60.000 0.00 0.00 0.00 3.91
62 63 0.178975 CTACGAGAGGGGGAGAGCAT 60.179 60.000 0.00 0.00 0.00 3.79
63 64 1.227664 CTACGAGAGGGGGAGAGCA 59.772 63.158 0.00 0.00 0.00 4.26
64 65 2.197605 GCTACGAGAGGGGGAGAGC 61.198 68.421 0.00 0.00 0.00 4.09
65 66 0.766131 TAGCTACGAGAGGGGGAGAG 59.234 60.000 0.00 0.00 0.00 3.20
66 67 1.074084 CATAGCTACGAGAGGGGGAGA 59.926 57.143 0.00 0.00 0.00 3.71
67 68 1.540267 CATAGCTACGAGAGGGGGAG 58.460 60.000 0.00 0.00 0.00 4.30
68 69 0.539901 GCATAGCTACGAGAGGGGGA 60.540 60.000 0.00 0.00 0.00 4.81
69 70 0.827925 TGCATAGCTACGAGAGGGGG 60.828 60.000 0.00 0.00 0.00 5.40
70 71 1.203523 GATGCATAGCTACGAGAGGGG 59.796 57.143 0.00 0.00 0.00 4.79
71 72 2.163412 GAGATGCATAGCTACGAGAGGG 59.837 54.545 0.00 0.00 0.00 4.30
72 73 2.163412 GGAGATGCATAGCTACGAGAGG 59.837 54.545 0.00 0.00 0.00 3.69
73 74 2.816672 TGGAGATGCATAGCTACGAGAG 59.183 50.000 0.00 0.00 0.00 3.20
74 75 2.863809 TGGAGATGCATAGCTACGAGA 58.136 47.619 0.00 0.00 0.00 4.04
75 76 3.192212 TCATGGAGATGCATAGCTACGAG 59.808 47.826 0.00 0.00 0.00 4.18
76 77 3.157087 TCATGGAGATGCATAGCTACGA 58.843 45.455 0.00 0.00 0.00 3.43
77 78 3.582714 TCATGGAGATGCATAGCTACG 57.417 47.619 0.00 0.00 0.00 3.51
78 79 6.462552 TCTATCATGGAGATGCATAGCTAC 57.537 41.667 0.00 0.00 37.57 3.58
79 80 7.068061 AGATCTATCATGGAGATGCATAGCTA 58.932 38.462 13.76 0.00 37.57 3.32
80 81 5.900699 AGATCTATCATGGAGATGCATAGCT 59.099 40.000 13.76 0.00 37.57 3.32
81 82 6.164417 AGATCTATCATGGAGATGCATAGC 57.836 41.667 13.76 0.00 37.57 2.97
82 83 8.693625 TGTAAGATCTATCATGGAGATGCATAG 58.306 37.037 13.76 3.14 37.57 2.23
83 84 8.599624 TGTAAGATCTATCATGGAGATGCATA 57.400 34.615 13.76 4.20 37.57 3.14
84 85 7.492077 TGTAAGATCTATCATGGAGATGCAT 57.508 36.000 13.76 0.00 37.57 3.96
85 86 6.923199 TGTAAGATCTATCATGGAGATGCA 57.077 37.500 13.76 0.00 37.57 3.96
86 87 7.278203 CACATGTAAGATCTATCATGGAGATGC 59.722 40.741 28.00 5.36 41.01 3.91
87 88 7.278203 GCACATGTAAGATCTATCATGGAGATG 59.722 40.741 28.00 21.68 41.01 2.90
88 89 7.329499 GCACATGTAAGATCTATCATGGAGAT 58.671 38.462 28.00 9.91 41.01 2.75
89 90 6.571150 CGCACATGTAAGATCTATCATGGAGA 60.571 42.308 28.00 0.00 41.01 3.71
90 91 5.575995 CGCACATGTAAGATCTATCATGGAG 59.424 44.000 28.00 23.16 41.01 3.86
91 92 5.011023 ACGCACATGTAAGATCTATCATGGA 59.989 40.000 28.00 2.43 41.01 3.41
92 93 5.233225 ACGCACATGTAAGATCTATCATGG 58.767 41.667 28.00 21.52 41.01 3.66
93 94 7.087007 ACTACGCACATGTAAGATCTATCATG 58.913 38.462 25.37 25.37 42.00 3.07
94 95 7.220741 ACTACGCACATGTAAGATCTATCAT 57.779 36.000 0.00 1.02 0.00 2.45
95 96 6.635030 ACTACGCACATGTAAGATCTATCA 57.365 37.500 0.00 0.00 0.00 2.15
96 97 9.627395 AATTACTACGCACATGTAAGATCTATC 57.373 33.333 0.00 0.00 31.03 2.08
97 98 9.982651 AAATTACTACGCACATGTAAGATCTAT 57.017 29.630 0.00 0.00 31.03 1.98
98 99 9.811995 AAAATTACTACGCACATGTAAGATCTA 57.188 29.630 0.00 0.00 31.03 1.98
99 100 8.718102 AAAATTACTACGCACATGTAAGATCT 57.282 30.769 0.00 0.00 31.03 2.75
122 123 5.390991 GGAAACGTTGCATGGAAAACAAAAA 60.391 36.000 8.91 0.00 0.00 1.94
123 124 4.093556 GGAAACGTTGCATGGAAAACAAAA 59.906 37.500 8.91 0.00 0.00 2.44
124 125 3.619038 GGAAACGTTGCATGGAAAACAAA 59.381 39.130 8.91 0.00 0.00 2.83
125 126 3.190874 GGAAACGTTGCATGGAAAACAA 58.809 40.909 8.91 0.00 0.00 2.83
126 127 2.482142 GGGAAACGTTGCATGGAAAACA 60.482 45.455 8.91 0.00 0.00 2.83
127 128 2.131972 GGGAAACGTTGCATGGAAAAC 58.868 47.619 8.91 0.00 0.00 2.43
128 129 1.757118 TGGGAAACGTTGCATGGAAAA 59.243 42.857 8.91 0.00 0.00 2.29
129 130 1.403814 TGGGAAACGTTGCATGGAAA 58.596 45.000 8.91 0.00 0.00 3.13
130 131 1.067821 GTTGGGAAACGTTGCATGGAA 59.932 47.619 8.91 0.00 0.00 3.53
131 132 0.671251 GTTGGGAAACGTTGCATGGA 59.329 50.000 8.91 0.00 0.00 3.41
132 133 0.387202 TGTTGGGAAACGTTGCATGG 59.613 50.000 8.91 0.00 0.00 3.66
133 134 1.486439 GTGTTGGGAAACGTTGCATG 58.514 50.000 8.91 0.00 0.00 4.06
134 135 0.030101 CGTGTTGGGAAACGTTGCAT 59.970 50.000 8.91 0.00 35.13 3.96
135 136 1.025113 TCGTGTTGGGAAACGTTGCA 61.025 50.000 8.91 0.00 40.61 4.08
136 137 0.316689 CTCGTGTTGGGAAACGTTGC 60.317 55.000 0.00 0.00 40.61 4.17
137 138 0.316689 GCTCGTGTTGGGAAACGTTG 60.317 55.000 0.00 0.00 40.61 4.10
138 139 1.441732 GGCTCGTGTTGGGAAACGTT 61.442 55.000 0.00 0.00 40.61 3.99
139 140 1.890510 GGCTCGTGTTGGGAAACGT 60.891 57.895 0.00 0.00 40.61 3.99
140 141 1.890041 TGGCTCGTGTTGGGAAACG 60.890 57.895 0.00 0.00 41.11 3.60
141 142 1.652563 GTGGCTCGTGTTGGGAAAC 59.347 57.895 0.00 0.00 0.00 2.78
142 143 1.890041 CGTGGCTCGTGTTGGGAAA 60.890 57.895 0.00 0.00 34.52 3.13
143 144 2.280524 CGTGGCTCGTGTTGGGAA 60.281 61.111 0.00 0.00 34.52 3.97
144 145 4.980805 GCGTGGCTCGTGTTGGGA 62.981 66.667 10.87 0.00 42.13 4.37
256 259 1.107538 TAGAAGGGGCCGATGTCGAG 61.108 60.000 3.62 0.00 43.02 4.04
344 362 3.633094 CTGCACGAGCTGTACGCCT 62.633 63.158 6.36 0.00 42.74 5.52
560 580 1.476891 TGTCAAGTCAGGATAGTCGGC 59.523 52.381 0.00 0.00 0.00 5.54
571 592 2.479837 GTCGTGGTTGATGTCAAGTCA 58.520 47.619 0.00 0.00 36.39 3.41
596 617 1.946650 GTCGAGCTAGCCATGCGAC 60.947 63.158 24.16 24.16 43.37 5.19
608 630 2.506438 GTGTAGCCGTGGTCGAGC 60.506 66.667 7.89 7.89 39.71 5.03
639 662 0.666577 GTGCCGTTGTCGAAGTAGCT 60.667 55.000 0.00 0.00 39.71 3.32
903 5524 5.689383 TTGTTTATTGCTTGAGTCTGGAC 57.311 39.130 0.00 0.00 0.00 4.02
909 5546 7.599998 GGTGAAATCATTGTTTATTGCTTGAGT 59.400 33.333 0.00 0.00 0.00 3.41
931 5570 4.823364 AGGGATAGAGAGAGATTGGTGA 57.177 45.455 0.00 0.00 0.00 4.02
997 5636 1.176527 GCTGCCAACAATAGCTTGGA 58.823 50.000 5.53 0.00 40.76 3.53
1082 5722 2.175715 GCCTATCTTGGGGAGGATGTTT 59.824 50.000 0.00 0.00 31.45 2.83
1672 6312 0.460987 GACCTTCTCCGTCATGCCAG 60.461 60.000 0.00 0.00 0.00 4.85
1673 6313 1.596934 GACCTTCTCCGTCATGCCA 59.403 57.895 0.00 0.00 0.00 4.92
1700 6340 1.371558 GCCGTCCACTCCAAACTCT 59.628 57.895 0.00 0.00 0.00 3.24
1829 6469 9.495754 GCAAACAGCACTCTAATAAAGAATTAG 57.504 33.333 0.00 0.00 44.28 1.73
1861 6501 9.752274 GGTGATAATTATACGAGTAGAACTACG 57.248 37.037 0.00 0.00 40.80 3.51
1874 6514 9.367444 CCTAACTTGATCGGGTGATAATTATAC 57.633 37.037 0.00 0.00 34.09 1.47
1877 6517 7.289317 AGTCCTAACTTGATCGGGTGATAATTA 59.711 37.037 0.00 0.00 29.83 1.40
1878 6518 6.099845 AGTCCTAACTTGATCGGGTGATAATT 59.900 38.462 0.00 0.00 29.83 1.40
1879 6519 5.602978 AGTCCTAACTTGATCGGGTGATAAT 59.397 40.000 0.00 0.00 29.83 1.28
1880 6520 4.960469 AGTCCTAACTTGATCGGGTGATAA 59.040 41.667 0.00 0.00 29.83 1.75
2032 6688 3.153919 CAACCTTCAATTCTTTCGGGGA 58.846 45.455 0.00 0.00 0.00 4.81
2037 6693 6.371825 ACGATAGGACAACCTTCAATTCTTTC 59.628 38.462 0.00 0.00 45.36 2.62
2041 6697 5.175859 TGACGATAGGACAACCTTCAATTC 58.824 41.667 0.00 0.00 45.36 2.17
2051 6707 7.658167 TGACACTTAAAATTGACGATAGGACAA 59.342 33.333 0.00 0.00 43.77 3.18
2090 6746 1.347707 ACACCGAAGAGCCAGAAATCA 59.652 47.619 0.00 0.00 0.00 2.57
2096 6752 0.946221 GTGTGACACCGAAGAGCCAG 60.946 60.000 3.92 0.00 0.00 4.85
2189 6848 2.729028 GGTGTATAACAGGCACCCAT 57.271 50.000 0.00 0.00 44.95 4.00
2210 6869 4.344104 CCATTCCCCACAGAACTAAACAT 58.656 43.478 0.00 0.00 0.00 2.71
2215 6874 1.633432 CACCCATTCCCCACAGAACTA 59.367 52.381 0.00 0.00 0.00 2.24
2217 6876 0.112412 ACACCCATTCCCCACAGAAC 59.888 55.000 0.00 0.00 0.00 3.01
2292 6954 5.620738 ACAGTCCAGCATATGTTACATCT 57.379 39.130 0.00 0.00 0.00 2.90
2301 6963 4.392940 GCAGGAATTACAGTCCAGCATAT 58.607 43.478 3.07 0.00 44.70 1.78
2306 6968 1.009829 GCGCAGGAATTACAGTCCAG 58.990 55.000 0.30 0.00 37.65 3.86
2307 6969 0.613260 AGCGCAGGAATTACAGTCCA 59.387 50.000 11.47 0.00 37.65 4.02
2312 6974 0.818938 TCCGTAGCGCAGGAATTACA 59.181 50.000 11.47 0.00 32.86 2.41
2326 6988 2.425569 GGTGCCCGTGGTATCCGTA 61.426 63.158 0.00 0.00 0.00 4.02
2327 6989 3.777910 GGTGCCCGTGGTATCCGT 61.778 66.667 0.00 0.00 0.00 4.69
2355 7017 5.927689 CCATTGTACACATGTGCTCATTTTT 59.072 36.000 25.68 6.16 31.15 1.94
2363 7025 0.887247 TGCCCATTGTACACATGTGC 59.113 50.000 25.68 11.00 0.00 4.57
2367 7029 0.037590 ACCGTGCCCATTGTACACAT 59.962 50.000 0.00 0.00 33.89 3.21
2368 7030 0.886938 CACCGTGCCCATTGTACACA 60.887 55.000 0.00 0.00 33.89 3.72
2384 7046 5.656416 TGAAATTCTGGGATATGAAACCACC 59.344 40.000 0.00 0.00 0.00 4.61
2386 7048 6.730447 TCTGAAATTCTGGGATATGAAACCA 58.270 36.000 0.12 0.00 0.00 3.67
2464 8054 0.916086 AATGTATTGGAGCACCCGGA 59.084 50.000 0.73 0.00 37.93 5.14
2509 8101 3.369546 AAAAGAACGGAAACATGCAGG 57.630 42.857 0.00 0.00 0.00 4.85
2563 8159 7.016153 TGTCTTAGACCAATCAACAACCTAT 57.984 36.000 10.10 0.00 0.00 2.57
2669 8265 3.110447 TGGAAGGCTTGTTGCAAATTC 57.890 42.857 3.46 0.00 45.15 2.17
2673 8269 1.484038 AGTTGGAAGGCTTGTTGCAA 58.516 45.000 3.46 0.00 45.15 4.08
2680 8276 6.883744 TCAAACAATTAAAGTTGGAAGGCTT 58.116 32.000 0.00 0.00 33.40 4.35
2774 8370 3.584406 TGCGATCAGATGGGGATAGATTT 59.416 43.478 0.00 0.00 0.00 2.17
2777 8373 2.309136 TGCGATCAGATGGGGATAGA 57.691 50.000 0.00 0.00 0.00 1.98
2779 8375 3.855255 TTTTGCGATCAGATGGGGATA 57.145 42.857 0.00 0.00 0.00 2.59
2780 8376 2.734755 TTTTGCGATCAGATGGGGAT 57.265 45.000 0.00 0.00 0.00 3.85
2794 8390 7.337150 TCAAATTTGAACATCGAGATTTTGC 57.663 32.000 18.45 0.00 33.55 3.68
2838 8436 6.989169 CCTTCTGGAAATAGACTACCATTCAG 59.011 42.308 0.00 0.00 34.57 3.02
2839 8437 6.672218 TCCTTCTGGAAATAGACTACCATTCA 59.328 38.462 0.00 0.00 39.87 2.57
2896 8494 2.674796 AAGTTCCGTAGATGGCAGTC 57.325 50.000 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.