Multiple sequence alignment - TraesCS3D01G225000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G225000 chr3D 100.000 7428 0 0 1 7428 306030918 306023491 0.000000e+00 13718
1 TraesCS3D01G225000 chr3D 95.833 264 10 1 1697 1959 91541207 91541470 6.890000e-115 425
2 TraesCS3D01G225000 chr3A 92.025 4627 283 45 1956 6537 424464225 424459640 0.000000e+00 6421
3 TraesCS3D01G225000 chr3A 86.507 1549 127 33 3 1516 424466022 424464521 0.000000e+00 1628
4 TraesCS3D01G225000 chr3A 87.631 857 82 12 6571 7420 424459637 424458798 0.000000e+00 974
5 TraesCS3D01G225000 chr3A 93.782 193 5 3 1515 1701 424464416 424464225 4.390000e-72 283
6 TraesCS3D01G225000 chr3B 90.104 2799 205 43 2910 5666 415052740 415055508 0.000000e+00 3568
7 TraesCS3D01G225000 chr3B 93.103 1218 68 7 493 1701 415049803 415051013 0.000000e+00 1770
8 TraesCS3D01G225000 chr3B 91.625 1003 69 13 5730 6727 415055517 415056509 0.000000e+00 1373
9 TraesCS3D01G225000 chr3B 93.342 781 31 5 1957 2725 415051011 415051782 0.000000e+00 1134
10 TraesCS3D01G225000 chr3B 91.272 401 27 5 85 485 415049213 415049605 2.360000e-149 540
11 TraesCS3D01G225000 chr3B 95.094 265 10 2 1698 1959 427264425 427264689 1.490000e-111 414
12 TraesCS3D01G225000 chr3B 93.571 280 14 4 1699 1975 660482156 660482434 1.490000e-111 414
13 TraesCS3D01G225000 chr2D 96.629 267 8 1 1695 1960 644999129 644999395 6.840000e-120 442
14 TraesCS3D01G225000 chr2D 94.834 271 11 3 1693 1960 112871219 112870949 3.200000e-113 420
15 TraesCS3D01G225000 chr7B 95.420 262 10 2 1699 1959 149805702 149805442 4.150000e-112 416
16 TraesCS3D01G225000 chr7B 87.179 117 13 2 2816 2931 588874917 588875032 1.680000e-26 132
17 TraesCS3D01G225000 chr1D 95.038 262 12 1 1700 1960 365804820 365804559 1.930000e-110 411
18 TraesCS3D01G225000 chr1D 94.382 267 13 2 1695 1960 365323994 365323729 6.940000e-110 409
19 TraesCS3D01G225000 chr1D 92.784 97 6 1 2816 2911 220408836 220408740 1.000000e-28 139
20 TraesCS3D01G225000 chr5A 94.677 263 11 2 1700 1959 34842167 34841905 8.970000e-109 405
21 TraesCS3D01G225000 chr5A 81.437 167 30 1 7192 7357 607804245 607804411 1.300000e-27 135
22 TraesCS3D01G225000 chr4D 92.929 99 6 1 2815 2912 494042371 494042469 7.770000e-30 143
23 TraesCS3D01G225000 chr4B 92.929 99 6 1 2816 2913 627254908 627255006 7.770000e-30 143
24 TraesCS3D01G225000 chr6D 92.857 98 6 1 2816 2912 808205 808302 2.790000e-29 141
25 TraesCS3D01G225000 chr6A 90.654 107 9 1 2808 2913 457850476 457850370 2.790000e-29 141
26 TraesCS3D01G225000 chr2B 91.346 104 6 3 2812 2913 52717868 52717970 1.000000e-28 139
27 TraesCS3D01G225000 chr5D 91.919 99 7 1 2816 2913 549469815 549469913 3.610000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G225000 chr3D 306023491 306030918 7427 True 13718.0 13718 100.00000 1 7428 1 chr3D.!!$R1 7427
1 TraesCS3D01G225000 chr3A 424458798 424466022 7224 True 2326.5 6421 89.98625 3 7420 4 chr3A.!!$R1 7417
2 TraesCS3D01G225000 chr3B 415049213 415056509 7296 False 1677.0 3568 91.88920 85 6727 5 chr3B.!!$F3 6642

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
59 60 0.032678 CACCTTCGAGATCCCATCGG 59.967 60.000 3.36 0.0 40.54 4.18 F
79 80 0.109132 CCGAAGCTCCCAAACAATGC 60.109 55.000 0.00 0.0 0.00 3.56 F
621 842 0.322008 CTTTGAGCCCTTCTTCCGCT 60.322 55.000 0.00 0.0 34.97 5.52 F
1055 1277 0.589223 CTCTCCGTGATCCTAGCGTC 59.411 60.000 0.00 0.0 0.00 5.19 F
1101 1323 1.095228 ATGGCTTGGTCCGTATTGCG 61.095 55.000 0.00 0.0 40.95 4.85 F
1627 1962 1.204941 GTATCAAGACGGTCCAGCACT 59.795 52.381 4.14 0.0 0.00 4.40 F
2447 2804 2.667473 TTGAAGCTACTTACGAGCCC 57.333 50.000 0.00 0.0 41.06 5.19 F
3801 5036 1.933181 GGCAGCCAAAACAGACAAAAC 59.067 47.619 6.55 0.0 0.00 2.43 F
4842 6120 0.531657 TTGCCCAAATCAATGAGCGG 59.468 50.000 0.00 0.0 0.00 5.52 F
5762 7040 0.532115 AATTGACCGCTTTCATGGGC 59.468 50.000 0.00 0.0 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1236 1458 0.392193 CCGCAGCCTCTGTGAAGATT 60.392 55.000 8.77 0.0 43.78 2.40 R
1948 2287 2.553172 GCTGTAGTACATACTCCCTCCG 59.447 54.545 2.82 0.0 37.73 4.63 R
2367 2724 3.410631 TTGGCAGTCTATTGGTCGAAA 57.589 42.857 0.00 0.0 0.00 3.46 R
2897 4122 0.547553 AGAGAGTACTCCCTCCGTCC 59.452 60.000 19.38 0.0 43.53 4.79 R
3028 4255 1.139163 GGCACCAAAACGCAATTCAG 58.861 50.000 0.00 0.0 0.00 3.02 R
3313 4540 0.249398 AAAGTTCGATGGACGGAGGG 59.751 55.000 0.00 0.0 42.82 4.30 R
4108 5346 1.480545 ACTTGAGGCACCAAAACAACC 59.519 47.619 0.00 0.0 0.00 3.77 R
5560 6838 0.248012 TTCCGCCTATGCTGAACGAA 59.752 50.000 0.00 0.0 36.03 3.85 R
5801 7079 0.519519 TGCCGGAATTTGTGCTAACG 59.480 50.000 5.05 0.0 0.00 3.18 R
7288 8574 0.041090 GGAGGGCAAGGGAAATGGAA 59.959 55.000 0.00 0.0 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.059913 ACCCTTCCAGTGGAGTCAAG 58.940 55.000 12.67 6.79 31.21 3.02
33 34 2.039084 GAGTCAAGGTGATGGTCCAACT 59.961 50.000 0.00 0.00 35.18 3.16
59 60 0.032678 CACCTTCGAGATCCCATCGG 59.967 60.000 3.36 0.00 40.54 4.18
69 70 4.918201 CCCATCGGCCGAAGCTCC 62.918 72.222 34.66 0.00 39.73 4.70
79 80 0.109132 CCGAAGCTCCCAAACAATGC 60.109 55.000 0.00 0.00 0.00 3.56
80 81 0.597568 CGAAGCTCCCAAACAATGCA 59.402 50.000 0.00 0.00 0.00 3.96
82 83 2.733227 CGAAGCTCCCAAACAATGCATC 60.733 50.000 0.00 0.00 0.00 3.91
85 86 1.404583 GCTCCCAAACAATGCATCCAC 60.405 52.381 0.00 0.00 0.00 4.02
123 137 1.301874 CGGTCCGGCAAACCTAACA 60.302 57.895 2.34 0.00 34.45 2.41
143 157 3.073650 ACATGAGGTTTCCTTCAGAGCTT 59.926 43.478 0.00 0.00 31.76 3.74
144 158 3.409026 TGAGGTTTCCTTCAGAGCTTC 57.591 47.619 0.00 0.00 31.76 3.86
148 162 2.484889 GTTTCCTTCAGAGCTTCACGT 58.515 47.619 0.00 0.00 0.00 4.49
154 168 2.031516 CAGAGCTTCACGTGCCCAG 61.032 63.158 11.67 7.75 0.00 4.45
183 197 1.033746 CATGCCTGGTTGCCACCTAG 61.034 60.000 8.65 4.24 44.61 3.02
184 198 2.751837 GCCTGGTTGCCACCTAGC 60.752 66.667 8.65 7.24 44.61 3.42
185 199 2.756400 CCTGGTTGCCACCTAGCA 59.244 61.111 8.65 0.00 44.61 3.49
275 302 0.389948 GGAGTACGGCACAAGACCAG 60.390 60.000 0.00 0.00 0.00 4.00
314 341 2.345244 CTCTGTTGGCCACTCGCT 59.655 61.111 3.88 0.00 37.74 4.93
345 372 4.193893 CATGGGGCTGGCGATGGA 62.194 66.667 0.00 0.00 0.00 3.41
346 373 3.419580 ATGGGGCTGGCGATGGAA 61.420 61.111 0.00 0.00 0.00 3.53
347 374 3.721370 ATGGGGCTGGCGATGGAAC 62.721 63.158 0.00 0.00 0.00 3.62
452 479 2.030981 CCTAGCTAGCTACTTGTACCGC 60.031 54.545 20.67 0.00 0.00 5.68
485 512 1.302832 GCCTAGTTGCCTGTGCTGT 60.303 57.895 0.00 0.00 38.71 4.40
486 513 1.580845 GCCTAGTTGCCTGTGCTGTG 61.581 60.000 0.00 0.00 38.71 3.66
487 514 1.580845 CCTAGTTGCCTGTGCTGTGC 61.581 60.000 0.00 0.00 38.71 4.57
488 515 0.604780 CTAGTTGCCTGTGCTGTGCT 60.605 55.000 0.00 0.00 38.71 4.40
489 516 0.886043 TAGTTGCCTGTGCTGTGCTG 60.886 55.000 0.00 0.00 38.71 4.41
490 517 2.188829 GTTGCCTGTGCTGTGCTGA 61.189 57.895 0.00 0.00 38.71 4.26
491 518 1.453562 TTGCCTGTGCTGTGCTGAA 60.454 52.632 0.00 0.00 38.71 3.02
506 723 5.324409 TGTGCTGAAGAAGGGATATTGTTT 58.676 37.500 0.00 0.00 0.00 2.83
510 727 5.504173 GCTGAAGAAGGGATATTGTTTACGC 60.504 44.000 0.00 0.00 0.00 4.42
588 809 0.930742 GCTCGCTCAGTTCGTATCCG 60.931 60.000 0.00 0.00 0.00 4.18
621 842 0.322008 CTTTGAGCCCTTCTTCCGCT 60.322 55.000 0.00 0.00 34.97 5.52
657 878 5.104776 ACTCTGCTCCATGTGCTCTATTAAA 60.105 40.000 8.95 0.00 0.00 1.52
669 890 3.866449 GCTCTATTAAATCCCCTGCCTCG 60.866 52.174 0.00 0.00 0.00 4.63
711 932 2.430367 GGTCGGCCAGTTCCACTT 59.570 61.111 0.00 0.00 34.09 3.16
712 933 1.228154 GGTCGGCCAGTTCCACTTT 60.228 57.895 0.00 0.00 34.09 2.66
912 1134 2.894763 GCCATGGCATGAATTTGCTA 57.105 45.000 32.08 0.00 42.38 3.49
916 1138 4.741235 GCCATGGCATGAATTTGCTAATGA 60.741 41.667 32.08 0.00 42.38 2.57
925 1147 6.266168 TGAATTTGCTAATGACATTTCCGT 57.734 33.333 5.89 0.00 0.00 4.69
928 1150 7.120579 TGAATTTGCTAATGACATTTCCGTAGT 59.879 33.333 5.89 0.00 0.00 2.73
931 1153 7.709269 TTGCTAATGACATTTCCGTAGTATC 57.291 36.000 5.89 0.00 0.00 2.24
941 1163 7.116736 ACATTTCCGTAGTATCCAGGAAAATT 58.883 34.615 11.76 0.90 37.94 1.82
942 1164 7.282450 ACATTTCCGTAGTATCCAGGAAAATTC 59.718 37.037 11.76 0.00 37.94 2.17
957 1179 6.647481 CAGGAAAATTCATCATGCTTTTGACA 59.353 34.615 3.32 0.00 0.00 3.58
960 1182 5.401531 AATTCATCATGCTTTTGACAGCT 57.598 34.783 0.00 0.00 40.79 4.24
961 1183 4.859304 TTCATCATGCTTTTGACAGCTT 57.141 36.364 0.00 0.00 40.79 3.74
962 1184 5.963176 TTCATCATGCTTTTGACAGCTTA 57.037 34.783 0.00 0.00 40.79 3.09
979 1201 7.706607 TGACAGCTTATTATACTGCACTACTTG 59.293 37.037 0.00 0.00 34.72 3.16
997 1219 1.062047 GCATCTGCAGTGCACATCG 59.938 57.895 26.21 4.53 42.08 3.84
998 1220 1.062047 CATCTGCAGTGCACATCGC 59.938 57.895 21.04 18.31 42.89 4.58
1008 1230 3.004326 GCACATCGCAATGGGGCAA 62.004 57.895 0.00 0.00 41.79 4.52
1019 1241 2.874751 GGGGCAACACGGAATTCG 59.125 61.111 0.00 0.00 45.88 3.34
1032 1254 2.159156 CGGAATTCGTGGGATCTGTACA 60.159 50.000 0.00 0.00 0.00 2.90
1042 1264 3.384789 TGGGATCTGTACAATTCTCTCCG 59.615 47.826 0.00 0.00 0.00 4.63
1044 1266 4.363999 GGATCTGTACAATTCTCTCCGTG 58.636 47.826 0.00 0.00 0.00 4.94
1045 1267 4.098044 GGATCTGTACAATTCTCTCCGTGA 59.902 45.833 0.00 0.00 0.00 4.35
1052 1274 3.068873 ACAATTCTCTCCGTGATCCTAGC 59.931 47.826 0.00 0.00 0.00 3.42
1055 1277 0.589223 CTCTCCGTGATCCTAGCGTC 59.411 60.000 0.00 0.00 0.00 5.19
1101 1323 1.095228 ATGGCTTGGTCCGTATTGCG 61.095 55.000 0.00 0.00 40.95 4.85
1104 1326 1.361793 GCTTGGTCCGTATTGCGTTA 58.638 50.000 0.00 0.00 39.32 3.18
1123 1345 1.751437 AAAGAAGAGGCCGGTAATGC 58.249 50.000 1.90 0.00 0.00 3.56
1239 1461 1.508088 CGCCCAGGCACAAAGAATC 59.492 57.895 9.78 0.00 42.06 2.52
1329 1551 1.349259 GACGTGTGCGCGAAGGTTAT 61.349 55.000 12.10 0.00 42.83 1.89
1504 1731 6.039829 AGTCAATTCAACCTCTTTTTGTCCTC 59.960 38.462 0.00 0.00 0.00 3.71
1516 1743 9.908152 CCTCTTTTTGTCCTCGTTTTATTTTAT 57.092 29.630 0.00 0.00 0.00 1.40
1627 1962 1.204941 GTATCAAGACGGTCCAGCACT 59.795 52.381 4.14 0.00 0.00 4.40
1658 1993 3.695830 ACGGTATGCTTTCTCTCCAAA 57.304 42.857 0.00 0.00 0.00 3.28
1701 2040 6.694447 TGTTGGGTTTGACTAGTCATAGTAC 58.306 40.000 25.68 18.97 42.46 2.73
1702 2041 6.495872 TGTTGGGTTTGACTAGTCATAGTACT 59.504 38.462 25.68 0.00 42.46 2.73
1703 2042 6.770746 TGGGTTTGACTAGTCATAGTACTC 57.229 41.667 25.68 19.48 42.46 2.59
1704 2043 5.655532 TGGGTTTGACTAGTCATAGTACTCC 59.344 44.000 25.68 16.46 42.46 3.85
1705 2044 5.068855 GGGTTTGACTAGTCATAGTACTCCC 59.931 48.000 25.68 20.74 42.46 4.30
1706 2045 5.892686 GGTTTGACTAGTCATAGTACTCCCT 59.107 44.000 25.68 0.00 42.46 4.20
1707 2046 6.039605 GGTTTGACTAGTCATAGTACTCCCTC 59.960 46.154 25.68 6.36 42.46 4.30
1708 2047 6.578313 TTGACTAGTCATAGTACTCCCTCT 57.422 41.667 25.68 0.00 42.46 3.69
1709 2048 7.687383 TTGACTAGTCATAGTACTCCCTCTA 57.313 40.000 25.68 3.28 42.46 2.43
1710 2049 7.875338 TGACTAGTCATAGTACTCCCTCTAT 57.125 40.000 21.74 0.00 42.46 1.98
1711 2050 8.277720 TGACTAGTCATAGTACTCCCTCTATT 57.722 38.462 21.74 0.00 42.46 1.73
1712 2051 8.725256 TGACTAGTCATAGTACTCCCTCTATTT 58.275 37.037 21.74 0.00 42.46 1.40
1713 2052 9.223099 GACTAGTCATAGTACTCCCTCTATTTC 57.777 40.741 18.20 0.00 42.46 2.17
1714 2053 8.951541 ACTAGTCATAGTACTCCCTCTATTTCT 58.048 37.037 0.00 0.00 40.57 2.52
1715 2054 9.802039 CTAGTCATAGTACTCCCTCTATTTCTT 57.198 37.037 0.00 0.00 0.00 2.52
1717 2056 9.495382 AGTCATAGTACTCCCTCTATTTCTTTT 57.505 33.333 0.00 0.00 0.00 2.27
1723 2062 9.549984 AGTACTCCCTCTATTTCTTTTTAGTCT 57.450 33.333 0.00 0.00 0.00 3.24
1724 2063 9.589111 GTACTCCCTCTATTTCTTTTTAGTCTG 57.411 37.037 0.00 0.00 0.00 3.51
1725 2064 7.106890 ACTCCCTCTATTTCTTTTTAGTCTGC 58.893 38.462 0.00 0.00 0.00 4.26
1726 2065 7.016153 TCCCTCTATTTCTTTTTAGTCTGCA 57.984 36.000 0.00 0.00 0.00 4.41
1727 2066 7.633789 TCCCTCTATTTCTTTTTAGTCTGCAT 58.366 34.615 0.00 0.00 0.00 3.96
1728 2067 8.768397 TCCCTCTATTTCTTTTTAGTCTGCATA 58.232 33.333 0.00 0.00 0.00 3.14
1729 2068 9.566432 CCCTCTATTTCTTTTTAGTCTGCATAT 57.434 33.333 0.00 0.00 0.00 1.78
1745 2084 9.624373 AGTCTGCATATAAGATTTGATCAAAGT 57.376 29.630 24.17 14.86 33.32 2.66
1746 2085 9.875675 GTCTGCATATAAGATTTGATCAAAGTC 57.124 33.333 24.17 19.70 33.32 3.01
1747 2086 9.617523 TCTGCATATAAGATTTGATCAAAGTCA 57.382 29.630 24.17 11.02 33.32 3.41
1774 2113 8.840833 ACTTTGTAAAGTTTGACCAATTTTGT 57.159 26.923 4.25 0.00 46.52 2.83
1775 2114 9.930693 ACTTTGTAAAGTTTGACCAATTTTGTA 57.069 25.926 4.25 0.00 46.52 2.41
1912 2251 8.570068 ACTTAGTCAAAGTTAACAAGGTTTGA 57.430 30.769 13.70 13.70 46.61 2.69
1920 2259 6.203808 AGTTAACAAGGTTTGACTTTGACC 57.796 37.500 8.61 0.00 37.36 4.02
1921 2260 5.712917 AGTTAACAAGGTTTGACTTTGACCA 59.287 36.000 8.61 0.00 37.36 4.02
1922 2261 6.209788 AGTTAACAAGGTTTGACTTTGACCAA 59.790 34.615 8.61 0.00 37.36 3.67
1923 2262 5.476091 AACAAGGTTTGACTTTGACCAAA 57.524 34.783 9.49 0.00 37.36 3.28
1924 2263 5.675684 ACAAGGTTTGACTTTGACCAAAT 57.324 34.783 9.49 0.00 37.36 2.32
1925 2264 5.660460 ACAAGGTTTGACTTTGACCAAATC 58.340 37.500 9.49 0.00 37.36 2.17
1926 2265 5.422012 ACAAGGTTTGACTTTGACCAAATCT 59.578 36.000 9.49 0.00 43.31 2.40
1927 2266 6.544928 AAGGTTTGACTTTGACCAAATCTT 57.455 33.333 7.34 7.34 44.34 2.40
1928 2267 7.123547 ACAAGGTTTGACTTTGACCAAATCTTA 59.876 33.333 11.49 0.00 46.16 2.10
1929 2268 7.839680 AGGTTTGACTTTGACCAAATCTTAT 57.160 32.000 0.00 0.00 39.83 1.73
1930 2269 8.934023 AGGTTTGACTTTGACCAAATCTTATA 57.066 30.769 0.00 0.00 39.83 0.98
1931 2270 9.533831 AGGTTTGACTTTGACCAAATCTTATAT 57.466 29.630 0.00 0.00 39.83 0.86
1932 2271 9.573133 GGTTTGACTTTGACCAAATCTTATATG 57.427 33.333 0.00 0.00 35.14 1.78
1933 2272 9.076596 GTTTGACTTTGACCAAATCTTATATGC 57.923 33.333 0.00 0.00 35.14 3.14
1934 2273 7.936496 TGACTTTGACCAAATCTTATATGCA 57.064 32.000 0.00 0.00 0.00 3.96
1935 2274 7.988737 TGACTTTGACCAAATCTTATATGCAG 58.011 34.615 0.00 0.00 0.00 4.41
1936 2275 7.828717 TGACTTTGACCAAATCTTATATGCAGA 59.171 33.333 0.00 0.00 0.00 4.26
1937 2276 7.989826 ACTTTGACCAAATCTTATATGCAGAC 58.010 34.615 0.00 0.00 0.00 3.51
1938 2277 7.831193 ACTTTGACCAAATCTTATATGCAGACT 59.169 33.333 0.00 0.00 0.00 3.24
1939 2278 9.330063 CTTTGACCAAATCTTATATGCAGACTA 57.670 33.333 0.00 0.00 0.00 2.59
1940 2279 9.679661 TTTGACCAAATCTTATATGCAGACTAA 57.320 29.630 0.00 0.00 0.00 2.24
1941 2280 9.679661 TTGACCAAATCTTATATGCAGACTAAA 57.320 29.630 0.00 0.00 0.00 1.85
1942 2281 9.679661 TGACCAAATCTTATATGCAGACTAAAA 57.320 29.630 0.00 0.00 0.00 1.52
1950 2289 8.879759 TCTTATATGCAGACTAAAAAGAAACGG 58.120 33.333 0.00 0.00 0.00 4.44
1951 2290 8.780846 TTATATGCAGACTAAAAAGAAACGGA 57.219 30.769 0.00 0.00 0.00 4.69
1952 2291 5.613358 ATGCAGACTAAAAAGAAACGGAG 57.387 39.130 0.00 0.00 0.00 4.63
1953 2292 3.813166 TGCAGACTAAAAAGAAACGGAGG 59.187 43.478 0.00 0.00 0.00 4.30
1954 2293 3.188667 GCAGACTAAAAAGAAACGGAGGG 59.811 47.826 0.00 0.00 0.00 4.30
1955 2294 4.638304 CAGACTAAAAAGAAACGGAGGGA 58.362 43.478 0.00 0.00 0.00 4.20
2034 2378 5.221263 TGCTCTAGGGTGATAGAATTTCGAC 60.221 44.000 0.00 0.00 31.51 4.20
2411 2768 4.157656 TGCTAATGCCGCTGAACTTAAATT 59.842 37.500 0.00 0.00 38.71 1.82
2447 2804 2.667473 TTGAAGCTACTTACGAGCCC 57.333 50.000 0.00 0.00 41.06 5.19
2632 2989 9.847224 TCCTGGTCTTTAATCCTTATTTATCAC 57.153 33.333 0.00 0.00 0.00 3.06
2715 3936 5.706916 ACAGTATTGTGTCGTGTAGTAAGG 58.293 41.667 0.00 0.00 35.83 2.69
2748 3969 8.352201 TCTTTTTGTTGGACACTTCAATCTATG 58.648 33.333 0.00 0.00 0.00 2.23
2825 4049 3.759815 TGCTACTTCCTACTTCCTCCT 57.240 47.619 0.00 0.00 0.00 3.69
2827 4051 4.024670 TGCTACTTCCTACTTCCTCCTTC 58.975 47.826 0.00 0.00 0.00 3.46
2828 4052 4.024670 GCTACTTCCTACTTCCTCCTTCA 58.975 47.826 0.00 0.00 0.00 3.02
2829 4053 4.142116 GCTACTTCCTACTTCCTCCTTCAC 60.142 50.000 0.00 0.00 0.00 3.18
2846 4070 8.507249 CCTCCTTCACAAAATAAGTGTCTTAAG 58.493 37.037 0.00 0.00 38.16 1.85
2847 4071 8.974060 TCCTTCACAAAATAAGTGTCTTAAGT 57.026 30.769 1.63 0.00 38.16 2.24
2901 4126 5.880054 ATTGAGACACTTATTTTGGGACG 57.120 39.130 0.00 0.00 0.00 4.79
2902 4127 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
3028 4255 3.477530 AGGTTCTAACTTGTCACTTGCC 58.522 45.455 0.00 0.00 0.00 4.52
3084 4311 6.267699 CCAGTCATCTACCAGGTACAATATGA 59.732 42.308 0.00 0.73 0.00 2.15
3286 4513 9.394477 ACTCGTCAAAAGTTAAAAGAATATTGC 57.606 29.630 0.00 0.00 0.00 3.56
3313 4540 6.366061 GGCCTTGTTCTGAATTTATTGTGTTC 59.634 38.462 0.00 0.00 0.00 3.18
3336 4563 3.064207 CTCCGTCCATCGAACTTTTTGA 58.936 45.455 0.00 0.00 42.86 2.69
3346 4577 8.846211 TCCATCGAACTTTTTGAGAGTTAATTT 58.154 29.630 0.00 0.00 37.46 1.82
3425 4656 2.027192 GTGGGAAGAGCACTGGTAATGA 60.027 50.000 0.00 0.00 0.00 2.57
3793 5028 1.950828 CACAAATGGCAGCCAAAACA 58.049 45.000 20.84 0.00 36.95 2.83
3801 5036 1.933181 GGCAGCCAAAACAGACAAAAC 59.067 47.619 6.55 0.00 0.00 2.43
3907 5143 9.903185 GCCATTTTGAAATTTGTGAAAATTTTG 57.097 25.926 8.47 5.08 41.06 2.44
3934 5170 7.112452 ACCTCTTTTGGATATATGTTTTGGC 57.888 36.000 0.00 0.00 0.00 4.52
4108 5346 7.684937 TTTTCCATTCAATTATTGGCCAAAG 57.315 32.000 24.71 10.35 0.00 2.77
4136 5374 6.322712 TGTTTTGGTGCCTCAAGTATAAAACT 59.677 34.615 0.00 0.00 41.49 2.66
4188 5426 4.401022 ACAGACACACAATGGATGATGTT 58.599 39.130 0.00 0.00 33.83 2.71
4201 5439 5.245531 TGGATGATGTTGTAGTGGTTTCTC 58.754 41.667 0.00 0.00 0.00 2.87
4205 5443 6.413783 TGATGTTGTAGTGGTTTCTCACTA 57.586 37.500 1.12 1.12 45.18 2.74
4226 5464 9.323985 TCACTAAAAAGGAAATGAAAAATGTGG 57.676 29.630 0.00 0.00 0.00 4.17
4238 5479 9.889128 AAATGAAAAATGTGGAATTATGTAGGG 57.111 29.630 0.00 0.00 0.00 3.53
4245 5486 7.645058 ATGTGGAATTATGTAGGGAAAAGTG 57.355 36.000 0.00 0.00 0.00 3.16
4367 5614 6.732154 AGGAACATTGATGCGAAATAATGAG 58.268 36.000 9.30 0.00 35.21 2.90
4371 5618 8.570096 AACATTGATGCGAAATAATGAGATTG 57.430 30.769 9.30 0.00 35.21 2.67
4489 5756 8.957466 GTTTATCCTGGCTAGTTTCATACTTTT 58.043 33.333 0.00 0.00 38.33 2.27
4509 5776 8.900983 ACTTTTCCTGATTCTAGATAGATTGC 57.099 34.615 0.00 0.00 31.40 3.56
4517 5784 7.318893 TGATTCTAGATAGATTGCGAGATTGG 58.681 38.462 0.00 0.00 31.40 3.16
4534 5801 7.312899 CGAGATTGGTTAGTTAAAATGCCTTT 58.687 34.615 0.00 0.00 0.00 3.11
4604 5873 3.067180 ACTTGTGCAAAACCAGAGTCATG 59.933 43.478 0.00 0.00 0.00 3.07
4619 5895 4.245660 GAGTCATGTTGTGAATCTCCGAA 58.754 43.478 0.00 0.00 45.86 4.30
4728 6004 8.561738 TTGAGATATAGTTCAAGGACCAAAAC 57.438 34.615 0.00 0.00 0.00 2.43
4729 6005 7.685481 TGAGATATAGTTCAAGGACCAAAACA 58.315 34.615 0.00 0.00 0.00 2.83
4760 6037 4.559153 CAGTTCTAACAAAAATGCCCCTG 58.441 43.478 0.00 0.00 0.00 4.45
4769 6046 2.206576 AAATGCCCCTGAGTGAAGTC 57.793 50.000 0.00 0.00 0.00 3.01
4800 6077 8.803397 ACCCTATTAGGTTTTCATTTCAGTAC 57.197 34.615 8.91 0.00 36.44 2.73
4801 6078 8.612145 ACCCTATTAGGTTTTCATTTCAGTACT 58.388 33.333 8.91 0.00 36.44 2.73
4842 6120 0.531657 TTGCCCAAATCAATGAGCGG 59.468 50.000 0.00 0.00 0.00 5.52
4854 6132 2.514824 GAGCGGATTGGAGCCACC 60.515 66.667 0.00 0.00 39.54 4.61
4926 6204 8.456471 CAAGAAATGATAGAGTTGCTGAAATCA 58.544 33.333 0.00 0.00 0.00 2.57
4942 6220 6.364568 TGAAATCAGAGGTTTGATCTCTCA 57.635 37.500 0.00 0.00 39.36 3.27
4949 6227 3.932089 GAGGTTTGATCTCTCAGCTTGAC 59.068 47.826 0.00 0.00 31.68 3.18
4960 6238 3.701542 TCTCAGCTTGACCGATTGAGTAT 59.298 43.478 0.00 0.00 37.23 2.12
4965 6243 5.580691 CAGCTTGACCGATTGAGTATGTTTA 59.419 40.000 0.00 0.00 0.00 2.01
4970 6248 9.314321 CTTGACCGATTGAGTATGTTTATTACT 57.686 33.333 0.00 0.00 0.00 2.24
4975 6253 8.755941 CCGATTGAGTATGTTTATTACTCTGTG 58.244 37.037 11.03 1.40 40.46 3.66
4992 6270 0.944386 GTGAGAAAAGCGAAGGCACA 59.056 50.000 0.00 0.00 43.41 4.57
5054 6332 2.612972 CGAATAACTGCAGACACCACCT 60.613 50.000 23.35 0.00 0.00 4.00
5126 6404 2.300723 AGTAAGGTGTGTGCGGTTATCA 59.699 45.455 0.00 0.00 0.00 2.15
5149 6427 6.995686 TCAACAAAGCTTTGGTTGTATCTCTA 59.004 34.615 35.65 18.69 42.34 2.43
5213 6491 8.482128 TGTTTCTTGTGTTTATTTTGGATTCCT 58.518 29.630 3.95 0.00 0.00 3.36
5249 6527 3.595173 TCACATGGTTTCTGTGTATCCG 58.405 45.455 0.00 0.00 43.53 4.18
5294 6572 1.533469 CGGGAGAGGGACGAACAACT 61.533 60.000 0.00 0.00 0.00 3.16
5301 6579 3.005578 AGAGGGACGAACAACTTCTGTAC 59.994 47.826 0.00 0.00 37.23 2.90
5341 6619 2.753966 GCAATGCGTGCGAGATGGT 61.754 57.895 0.00 0.00 45.10 3.55
5407 6685 1.134521 GGGCATGTTGGAGTATGTCGA 60.135 52.381 0.00 0.00 29.85 4.20
5425 6703 1.202382 CGATCGGGTGAGGTTACCTTC 60.202 57.143 4.99 2.12 40.66 3.46
5439 6717 7.020827 AGGTTACCTTCTGATTCTTGAATCA 57.979 36.000 20.55 20.55 37.58 2.57
5468 6746 7.978982 AGCATTTCTACATTTGTAGCTTACAG 58.021 34.615 11.99 2.89 45.69 2.74
5499 6777 1.985473 AAATGACAGCTCTGCCACAA 58.015 45.000 0.00 0.00 0.00 3.33
5513 6791 1.142870 GCCACAATATGCCTAGTCCCA 59.857 52.381 0.00 0.00 0.00 4.37
5560 6838 3.642848 ACATTGATTCCCTGCAAAGTGTT 59.357 39.130 0.00 0.00 0.00 3.32
5671 6949 4.705023 ACCTTTATAAGAATGTGCACACCC 59.295 41.667 24.37 16.63 0.00 4.61
5674 6952 1.803334 TAAGAATGTGCACACCCGTC 58.197 50.000 24.37 16.57 0.00 4.79
5677 6955 1.897398 GAATGTGCACACCCGTCGTC 61.897 60.000 24.37 7.24 0.00 4.20
5683 6961 1.338294 TGCACACCCGTCGTCATAAAT 60.338 47.619 0.00 0.00 0.00 1.40
5706 6984 9.825972 AAATTTTGAATGTGATAAGTAGTCACG 57.174 29.630 2.32 0.00 46.89 4.35
5707 6985 8.771920 ATTTTGAATGTGATAAGTAGTCACGA 57.228 30.769 0.00 0.00 46.89 4.35
5708 6986 8.771920 TTTTGAATGTGATAAGTAGTCACGAT 57.228 30.769 0.00 0.00 46.89 3.73
5712 6990 8.197439 TGAATGTGATAAGTAGTCACGATGATT 58.803 33.333 0.00 0.00 46.89 2.57
5720 6998 7.392494 AAGTAGTCACGATGATTAGAACTCA 57.608 36.000 0.00 0.00 0.00 3.41
5725 7003 6.375736 AGTCACGATGATTAGAACTCAGAAGA 59.624 38.462 0.00 0.00 0.00 2.87
5762 7040 0.532115 AATTGACCGCTTTCATGGGC 59.468 50.000 0.00 0.00 0.00 5.36
5763 7041 1.322538 ATTGACCGCTTTCATGGGCC 61.323 55.000 0.00 0.00 29.51 5.80
5783 7061 3.375299 GCCTGCTGTATTCATTTCGAACT 59.625 43.478 0.00 0.00 36.12 3.01
5801 7079 7.035840 TCGAACTAGTTACCATCTTGTATCC 57.964 40.000 8.42 0.00 0.00 2.59
5827 7105 2.163412 GCACAAATTCCGGCATGTCTTA 59.837 45.455 0.00 0.00 0.00 2.10
5873 7152 7.034685 ACACTCAGTGGGTTTTTAAACATAC 57.965 36.000 10.28 5.66 37.53 2.39
5877 7156 5.008811 TCAGTGGGTTTTTAAACATACGTGG 59.991 40.000 0.00 0.00 40.63 4.94
5878 7157 3.982701 GTGGGTTTTTAAACATACGTGGC 59.017 43.478 0.00 0.00 40.63 5.01
5879 7158 3.890147 TGGGTTTTTAAACATACGTGGCT 59.110 39.130 0.00 0.00 40.63 4.75
5880 7159 4.023021 TGGGTTTTTAAACATACGTGGCTC 60.023 41.667 0.00 0.00 40.63 4.70
5935 7214 3.532542 AGGCAGAGATACTTAAAACCGC 58.467 45.455 0.00 0.00 0.00 5.68
5940 7219 4.804139 CAGAGATACTTAAAACCGCGACAT 59.196 41.667 8.23 0.00 0.00 3.06
6007 7286 6.875972 ATCCTACTGAAATGTACCTCACTT 57.124 37.500 0.00 0.00 0.00 3.16
6037 7316 5.652994 ATATTTGTAAGGCGAGGCAAAAA 57.347 34.783 0.00 0.00 34.99 1.94
6142 7422 3.689161 ACAATTTCAATCATCTTCCGCGA 59.311 39.130 8.23 0.00 0.00 5.87
6185 7465 2.301505 CGATGGATTCGTGGCTCAC 58.698 57.895 0.00 0.00 43.01 3.51
6236 7516 1.003573 CCCTCCAGTAGGCCCTCTT 59.996 63.158 0.00 0.00 45.03 2.85
6326 7606 1.062587 CTGAATTTCACGGCATCGGTC 59.937 52.381 0.00 0.00 41.39 4.79
6332 7612 2.683933 ACGGCATCGGTCCCTCTT 60.684 61.111 0.00 0.00 41.39 2.85
6347 7627 3.718434 TCCCTCTTTGTCATGCAGGATAT 59.282 43.478 3.55 0.00 0.00 1.63
6382 7662 1.298667 GGGAGCATACCACACCGTT 59.701 57.895 0.00 0.00 0.00 4.44
6417 7697 1.580845 ATGAGTGTTGGCTTCGCAGC 61.581 55.000 0.00 0.00 46.52 5.25
6444 7724 3.181499 GCATGAGAGAAGCATTTCACTGG 60.181 47.826 0.00 0.00 34.88 4.00
6463 7743 9.685276 TTCACTGGTGTATTATCTTTGATTGAT 57.315 29.630 0.53 0.00 0.00 2.57
6498 7778 7.552687 GGCCATTTCGACATGAGGAATTATATA 59.447 37.037 13.10 0.00 0.00 0.86
6543 7823 8.438513 GCATGATAGCCTTACATATATATTGCG 58.561 37.037 0.00 0.00 0.00 4.85
6554 7834 7.562640 ACATATATATTGCGTGTTAGTCGTG 57.437 36.000 0.00 0.00 0.00 4.35
6618 7898 9.341899 GTTGTGTAAAAGGTTAAATAGCATCTG 57.658 33.333 0.00 0.00 0.00 2.90
6627 7907 6.992715 AGGTTAAATAGCATCTGACATGTACC 59.007 38.462 0.00 0.00 0.00 3.34
6634 7914 3.432186 GCATCTGACATGTACCTAGCCAA 60.432 47.826 0.00 0.00 0.00 4.52
6642 7922 3.553828 TGTACCTAGCCAATACCTTGC 57.446 47.619 0.00 0.00 0.00 4.01
6653 7933 3.880490 CCAATACCTTGCGCACCTATAAA 59.120 43.478 11.12 0.00 0.00 1.40
6762 8043 5.779806 AAGGAGTTTATCGACATTGTTCG 57.220 39.130 0.00 0.00 40.53 3.95
6770 8051 1.262950 TCGACATTGTTCGTTGCCAAG 59.737 47.619 0.00 0.00 40.07 3.61
6781 8062 1.239347 GTTGCCAAGACTTCACCCTC 58.761 55.000 0.00 0.00 0.00 4.30
6784 8065 1.296715 CCAAGACTTCACCCTCCGG 59.703 63.158 0.00 0.00 0.00 5.14
6786 8067 1.841556 AAGACTTCACCCTCCGGCA 60.842 57.895 0.00 0.00 0.00 5.69
6794 8075 2.224159 ACCCTCCGGCAAGTCATGT 61.224 57.895 0.00 0.00 0.00 3.21
6803 8084 0.883153 GCAAGTCATGTGGCATGTCA 59.117 50.000 0.00 0.00 0.00 3.58
6804 8085 1.135489 GCAAGTCATGTGGCATGTCAG 60.135 52.381 0.00 0.00 0.00 3.51
6819 8100 0.525668 GTCAGTCGGAGTGTATGCGG 60.526 60.000 12.31 0.00 43.91 5.69
6821 8102 1.379443 AGTCGGAGTGTATGCGGGA 60.379 57.895 0.00 0.00 43.91 5.14
6824 8105 0.681887 TCGGAGTGTATGCGGGAGAA 60.682 55.000 0.00 0.00 43.91 2.87
6828 8109 2.541556 GAGTGTATGCGGGAGAAAGTC 58.458 52.381 0.00 0.00 0.00 3.01
6832 8113 1.134907 GTATGCGGGAGAAAGTCGGAA 60.135 52.381 0.00 0.00 0.00 4.30
6845 8126 5.875359 AGAAAGTCGGAATGATCCAAGTTAC 59.125 40.000 0.00 0.00 46.97 2.50
6847 8128 4.759782 AGTCGGAATGATCCAAGTTACAG 58.240 43.478 0.00 0.00 46.97 2.74
6848 8129 3.309954 GTCGGAATGATCCAAGTTACAGC 59.690 47.826 0.00 0.00 46.97 4.40
6865 8146 1.083401 GCGAGAGTGTTTGTGCGTG 60.083 57.895 0.00 0.00 0.00 5.34
6866 8147 1.762222 GCGAGAGTGTTTGTGCGTGT 61.762 55.000 0.00 0.00 0.00 4.49
6867 8148 0.043053 CGAGAGTGTTTGTGCGTGTG 60.043 55.000 0.00 0.00 0.00 3.82
6868 8149 0.316196 GAGAGTGTTTGTGCGTGTGC 60.316 55.000 0.00 0.00 43.20 4.57
6881 8162 0.799393 CGTGTGCGAGAGAGAGAGAA 59.201 55.000 0.00 0.00 41.33 2.87
6899 8180 2.896685 AGAAAGAGTCACAGAGGGAGTG 59.103 50.000 0.00 0.00 38.32 3.51
6906 8187 2.033550 GTCACAGAGGGAGTGCTATACG 59.966 54.545 0.00 0.00 36.93 3.06
6910 8191 7.380358 TCACAGAGGGAGTGCTATACGTAGT 62.380 48.000 0.08 0.00 39.88 2.73
6921 8202 8.223177 AGTGCTATACGTAGTTAACAGAGATT 57.777 34.615 8.61 0.00 37.78 2.40
6922 8203 8.129840 AGTGCTATACGTAGTTAACAGAGATTG 58.870 37.037 8.61 0.00 37.78 2.67
6934 8215 7.551262 AGTTAACAGAGATTGTGTGTTTGTACA 59.449 33.333 8.61 0.00 39.60 2.90
6936 8217 6.363577 ACAGAGATTGTGTGTTTGTACAAG 57.636 37.500 8.56 0.00 39.83 3.16
6937 8218 6.112734 ACAGAGATTGTGTGTTTGTACAAGA 58.887 36.000 8.56 0.00 39.83 3.02
6944 8225 2.032117 TGTGTTTGTACAAGAGCATGCG 60.032 45.455 13.01 0.00 35.69 4.73
6971 8252 2.180276 GAGGGAGAGTGGTGTATGTGT 58.820 52.381 0.00 0.00 0.00 3.72
6977 8258 3.759086 GAGAGTGGTGTATGTGTGAGAGA 59.241 47.826 0.00 0.00 0.00 3.10
6983 8264 1.361197 TGTATGTGTGAGAGAGGGGGA 59.639 52.381 0.00 0.00 0.00 4.81
6986 8267 0.251832 TGTGTGAGAGAGGGGGAGAC 60.252 60.000 0.00 0.00 0.00 3.36
6989 8270 0.333312 GTGAGAGAGGGGGAGACAGA 59.667 60.000 0.00 0.00 0.00 3.41
7038 8319 1.411246 ACGAGTATTAGCATCCGCCAA 59.589 47.619 0.00 0.00 39.83 4.52
7043 8324 1.901591 ATTAGCATCCGCCAATGGAG 58.098 50.000 2.05 0.00 42.45 3.86
7068 8349 6.238320 GGCAGTTATGACTAAGCTGATCAAAG 60.238 42.308 0.00 0.00 33.90 2.77
7071 8352 6.754209 AGTTATGACTAAGCTGATCAAAGTCG 59.246 38.462 16.28 0.15 39.52 4.18
7085 8366 5.712217 TCAAAGTCGCCTTTAATACATCG 57.288 39.130 0.00 0.00 38.87 3.84
7092 8373 3.308595 CGCCTTTAATACATCGAGCACAA 59.691 43.478 0.00 0.00 0.00 3.33
7100 8381 2.766313 ACATCGAGCACAAGCAGTTAA 58.234 42.857 0.00 0.00 45.49 2.01
7157 8438 8.673626 AACAATAAAACTGTATGCAAGAATCG 57.326 30.769 0.00 0.00 0.00 3.34
7178 8459 4.398988 TCGTTAGAGGCGGTTGTTATTCTA 59.601 41.667 0.00 0.00 0.00 2.10
7179 8460 5.068198 TCGTTAGAGGCGGTTGTTATTCTAT 59.932 40.000 0.00 0.00 0.00 1.98
7181 8462 6.919662 CGTTAGAGGCGGTTGTTATTCTATAA 59.080 38.462 0.00 0.00 0.00 0.98
7182 8463 7.096312 CGTTAGAGGCGGTTGTTATTCTATAAC 60.096 40.741 3.25 3.25 0.00 1.89
7183 8464 5.608449 AGAGGCGGTTGTTATTCTATAACC 58.392 41.667 7.01 0.00 39.29 2.85
7184 8465 5.129815 AGAGGCGGTTGTTATTCTATAACCA 59.870 40.000 0.00 0.00 42.01 3.67
7185 8466 5.121105 AGGCGGTTGTTATTCTATAACCAC 58.879 41.667 0.00 6.28 42.01 4.16
7186 8467 4.274214 GGCGGTTGTTATTCTATAACCACC 59.726 45.833 16.84 16.84 42.01 4.61
7187 8468 4.274214 GCGGTTGTTATTCTATAACCACCC 59.726 45.833 19.18 12.36 42.01 4.61
7213 8494 3.749609 ACCCCTTAAATTTCTCGTCAACG 59.250 43.478 0.00 0.00 41.45 4.10
7224 8509 1.369930 CGTCAACGCATGCGGTTTT 60.370 52.632 39.95 24.71 44.69 2.43
7234 8519 4.982916 ACGCATGCGGTTTTTATTTTACAA 59.017 33.333 39.95 0.00 44.69 2.41
7237 8522 6.295857 GCATGCGGTTTTTATTTTACAACTG 58.704 36.000 0.00 0.00 0.00 3.16
7240 8525 6.136007 GCGGTTTTTATTTTACAACTGCTC 57.864 37.500 7.33 0.00 44.68 4.26
7242 8527 6.137415 CGGTTTTTATTTTACAACTGCTCGA 58.863 36.000 0.00 0.00 0.00 4.04
7245 8530 7.112984 GGTTTTTATTTTACAACTGCTCGAGTG 59.887 37.037 15.13 9.99 34.02 3.51
7249 8534 0.319555 TACAACTGCTCGAGTGTGGC 60.320 55.000 15.13 0.00 34.02 5.01
7288 8574 6.313164 GCGTAACCTTGCTAGTCTATTTTTCT 59.687 38.462 0.00 0.00 0.00 2.52
7290 8576 8.381387 CGTAACCTTGCTAGTCTATTTTTCTTC 58.619 37.037 0.00 0.00 0.00 2.87
7291 8577 7.689446 AACCTTGCTAGTCTATTTTTCTTCC 57.311 36.000 0.00 0.00 0.00 3.46
7293 8579 7.406104 ACCTTGCTAGTCTATTTTTCTTCCAT 58.594 34.615 0.00 0.00 0.00 3.41
7303 8589 4.350368 TTTTTCTTCCATTTCCCTTGCC 57.650 40.909 0.00 0.00 0.00 4.52
7306 8592 1.005924 TCTTCCATTTCCCTTGCCCTC 59.994 52.381 0.00 0.00 0.00 4.30
7309 8595 1.387737 CATTTCCCTTGCCCTCCCA 59.612 57.895 0.00 0.00 0.00 4.37
7311 8597 2.168272 ATTTCCCTTGCCCTCCCACC 62.168 60.000 0.00 0.00 0.00 4.61
7320 8606 2.606519 CCTCCCACCTTCCACGGA 60.607 66.667 0.00 0.00 0.00 4.69
7327 8613 1.149854 ACCTTCCACGGACAAACCC 59.850 57.895 0.00 0.00 34.64 4.11
7328 8614 1.350310 ACCTTCCACGGACAAACCCT 61.350 55.000 0.00 0.00 34.64 4.34
7329 8615 0.688487 CCTTCCACGGACAAACCCTA 59.312 55.000 0.00 0.00 34.64 3.53
7330 8616 1.338769 CCTTCCACGGACAAACCCTAG 60.339 57.143 0.00 0.00 34.64 3.02
7331 8617 0.035739 TTCCACGGACAAACCCTAGC 59.964 55.000 0.00 0.00 34.64 3.42
7332 8618 1.122632 TCCACGGACAAACCCTAGCA 61.123 55.000 0.00 0.00 34.64 3.49
7334 8620 0.953960 CACGGACAAACCCTAGCACC 60.954 60.000 0.00 0.00 34.64 5.01
7336 8622 0.250553 CGGACAAACCCTAGCACCAA 60.251 55.000 0.00 0.00 34.64 3.67
7337 8623 1.244816 GGACAAACCCTAGCACCAAC 58.755 55.000 0.00 0.00 0.00 3.77
7339 8625 0.181824 ACAAACCCTAGCACCAACGT 59.818 50.000 0.00 0.00 0.00 3.99
7341 8627 0.250597 AAACCCTAGCACCAACGTCC 60.251 55.000 0.00 0.00 0.00 4.79
7342 8628 1.125711 AACCCTAGCACCAACGTCCT 61.126 55.000 0.00 0.00 0.00 3.85
7343 8629 1.079127 CCCTAGCACCAACGTCCTG 60.079 63.158 0.00 0.00 0.00 3.86
7420 8706 1.333177 GATCTGCCCATCCTAGACGT 58.667 55.000 0.00 0.00 0.00 4.34
7421 8707 1.000283 GATCTGCCCATCCTAGACGTG 60.000 57.143 0.00 0.00 0.00 4.49
7422 8708 0.324368 TCTGCCCATCCTAGACGTGT 60.324 55.000 0.00 0.00 0.00 4.49
7423 8709 0.537188 CTGCCCATCCTAGACGTGTT 59.463 55.000 0.00 0.00 0.00 3.32
7424 8710 0.249120 TGCCCATCCTAGACGTGTTG 59.751 55.000 0.00 0.00 0.00 3.33
7425 8711 0.462047 GCCCATCCTAGACGTGTTGG 60.462 60.000 6.86 6.86 0.00 3.77
7426 8712 0.178068 CCCATCCTAGACGTGTTGGG 59.822 60.000 12.96 9.39 38.01 4.12
7427 8713 0.178068 CCATCCTAGACGTGTTGGGG 59.822 60.000 12.96 3.97 0.00 4.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 0.984230 GGACCATCACCTTGACTCCA 59.016 55.000 0.00 0.00 0.00 3.86
11 12 0.984230 TGGACCATCACCTTGACTCC 59.016 55.000 0.00 0.00 0.00 3.85
16 17 1.826385 GGAGTTGGACCATCACCTTG 58.174 55.000 10.81 0.00 0.00 3.61
17 18 0.324943 CGGAGTTGGACCATCACCTT 59.675 55.000 14.76 0.00 0.00 3.50
19 20 1.677552 ACGGAGTTGGACCATCACC 59.322 57.895 8.56 8.56 37.78 4.02
33 34 0.809385 GATCTCGAAGGTGTGACGGA 59.191 55.000 0.00 0.00 0.00 4.69
59 60 0.109132 CATTGTTTGGGAGCTTCGGC 60.109 55.000 0.00 0.00 42.17 5.54
69 70 0.737019 GGCGTGGATGCATTGTTTGG 60.737 55.000 0.00 0.00 36.28 3.28
119 133 4.287067 AGCTCTGAAGGAAACCTCATGTTA 59.713 41.667 0.00 0.00 35.67 2.41
123 137 3.328931 TGAAGCTCTGAAGGAAACCTCAT 59.671 43.478 0.00 0.00 30.89 2.90
137 151 2.164865 CTCTGGGCACGTGAAGCTCT 62.165 60.000 22.23 0.00 32.41 4.09
179 193 6.690530 AGACTAGTCGTACTACTATGCTAGG 58.309 44.000 17.07 0.00 31.70 3.02
183 197 6.145371 GTGGTAGACTAGTCGTACTACTATGC 59.855 46.154 24.83 10.24 36.48 3.14
184 198 7.432869 AGTGGTAGACTAGTCGTACTACTATG 58.567 42.308 28.92 5.44 35.52 2.23
185 199 7.255801 GGAGTGGTAGACTAGTCGTACTACTAT 60.256 44.444 29.44 19.61 36.38 2.12
261 288 2.100879 GAGACCTGGTCTTGTGCCGT 62.101 60.000 28.90 5.72 43.53 5.68
275 302 2.359975 CTTTGGGGGCACGAGACC 60.360 66.667 0.00 0.00 44.93 3.85
328 355 3.719646 TTCCATCGCCAGCCCCATG 62.720 63.158 0.00 0.00 0.00 3.66
340 367 5.567138 AATCGATCCAAGTTTGTTCCATC 57.433 39.130 0.00 0.00 0.00 3.51
345 372 2.811431 TGCGAATCGATCCAAGTTTGTT 59.189 40.909 6.91 0.00 0.00 2.83
346 373 2.422597 TGCGAATCGATCCAAGTTTGT 58.577 42.857 6.91 0.00 0.00 2.83
347 374 3.419915 CTTGCGAATCGATCCAAGTTTG 58.580 45.455 6.91 2.35 34.38 2.93
348 375 2.159517 GCTTGCGAATCGATCCAAGTTT 60.160 45.455 23.07 1.10 38.01 2.66
376 403 2.418746 GCGGTGCCTTAGAAGATCAAGA 60.419 50.000 0.00 0.00 0.00 3.02
452 479 4.082665 ACTAGGCATCAATCATCACAGG 57.917 45.455 0.00 0.00 0.00 4.00
485 512 5.584649 CGTAAACAATATCCCTTCTTCAGCA 59.415 40.000 0.00 0.00 0.00 4.41
486 513 5.504173 GCGTAAACAATATCCCTTCTTCAGC 60.504 44.000 0.00 0.00 0.00 4.26
487 514 5.817816 AGCGTAAACAATATCCCTTCTTCAG 59.182 40.000 0.00 0.00 0.00 3.02
488 515 5.584649 CAGCGTAAACAATATCCCTTCTTCA 59.415 40.000 0.00 0.00 0.00 3.02
489 516 5.585047 ACAGCGTAAACAATATCCCTTCTTC 59.415 40.000 0.00 0.00 0.00 2.87
490 517 5.497474 ACAGCGTAAACAATATCCCTTCTT 58.503 37.500 0.00 0.00 0.00 2.52
491 518 5.099042 ACAGCGTAAACAATATCCCTTCT 57.901 39.130 0.00 0.00 0.00 2.85
506 723 5.885230 ACTGTACACATAGTTACAGCGTA 57.115 39.130 8.35 0.00 42.51 4.42
510 727 6.779115 TGCAAACTGTACACATAGTTACAG 57.221 37.500 7.12 7.12 43.86 2.74
588 809 1.807142 CTCAAAGAAAAGGAGGGCGTC 59.193 52.381 0.00 0.00 0.00 5.19
657 878 1.338136 ATCGAAACGAGGCAGGGGAT 61.338 55.000 0.00 0.00 39.91 3.85
669 890 8.798153 CCATTTTGCTATTTAGTTGATCGAAAC 58.202 33.333 0.00 0.00 0.00 2.78
719 940 6.428159 CGGGGGAATGATTATTTTACAGAGAG 59.572 42.308 0.00 0.00 0.00 3.20
909 1131 6.220930 TGGATACTACGGAAATGTCATTAGC 58.779 40.000 0.00 0.00 37.61 3.09
910 1132 6.868864 CCTGGATACTACGGAAATGTCATTAG 59.131 42.308 0.00 0.00 37.61 1.73
912 1134 5.365605 TCCTGGATACTACGGAAATGTCATT 59.634 40.000 0.00 0.00 37.61 2.57
916 1138 5.687166 TTTCCTGGATACTACGGAAATGT 57.313 39.130 0.00 0.00 40.54 2.71
925 1147 7.520798 AGCATGATGAATTTTCCTGGATACTA 58.479 34.615 0.00 0.00 37.61 1.82
928 1150 7.664552 AAAGCATGATGAATTTTCCTGGATA 57.335 32.000 0.00 0.00 0.00 2.59
931 1153 6.091713 GTCAAAAGCATGATGAATTTTCCTGG 59.908 38.462 0.00 0.00 0.00 4.45
941 1163 6.519679 AATAAGCTGTCAAAAGCATGATGA 57.480 33.333 0.00 0.00 46.08 2.92
942 1164 9.390795 GTATAATAAGCTGTCAAAAGCATGATG 57.609 33.333 0.00 0.00 46.08 3.07
979 1201 1.062047 CGATGTGCACTGCAGATGC 59.938 57.895 23.35 24.48 42.54 3.91
997 1219 1.887344 ATTCCGTGTTGCCCCATTGC 61.887 55.000 0.00 0.00 0.00 3.56
998 1220 0.607620 AATTCCGTGTTGCCCCATTG 59.392 50.000 0.00 0.00 0.00 2.82
1013 1235 5.817816 AGAATTGTACAGATCCCACGAATTC 59.182 40.000 0.00 0.00 0.00 2.17
1016 1238 4.466370 AGAGAATTGTACAGATCCCACGAA 59.534 41.667 0.00 0.00 0.00 3.85
1019 1241 4.698575 GGAGAGAATTGTACAGATCCCAC 58.301 47.826 0.00 0.00 0.00 4.61
1023 1245 5.250235 TCACGGAGAGAATTGTACAGATC 57.750 43.478 0.00 0.00 0.00 2.75
1032 1254 2.294791 CGCTAGGATCACGGAGAGAATT 59.705 50.000 0.00 0.00 0.00 2.17
1042 1264 1.263752 GGTACTCGACGCTAGGATCAC 59.736 57.143 0.00 0.00 0.00 3.06
1044 1266 0.873721 GGGTACTCGACGCTAGGATC 59.126 60.000 0.00 0.00 37.99 3.36
1045 1267 3.018479 GGGTACTCGACGCTAGGAT 57.982 57.895 0.00 0.00 37.99 3.24
1101 1323 3.064958 GCATTACCGGCCTCTTCTTTAAC 59.935 47.826 0.00 0.00 0.00 2.01
1104 1326 1.004277 TGCATTACCGGCCTCTTCTTT 59.996 47.619 0.00 0.00 0.00 2.52
1123 1345 6.403636 GGCACTGGTTTGTTATAGATGTCTTG 60.404 42.308 0.00 0.00 0.00 3.02
1182 1404 1.522569 CCTCACCGGATCAACCTCC 59.477 63.158 9.46 0.00 36.31 4.30
1183 1405 0.976073 TCCCTCACCGGATCAACCTC 60.976 60.000 9.46 0.00 36.31 3.85
1236 1458 0.392193 CCGCAGCCTCTGTGAAGATT 60.392 55.000 8.77 0.00 43.78 2.40
1239 1461 3.123620 GCCGCAGCCTCTGTGAAG 61.124 66.667 8.77 0.00 43.78 3.02
1347 1569 2.658285 TGAGCGTTCACGTAGTTCTTC 58.342 47.619 0.00 0.00 41.61 2.87
1516 1743 9.545105 CATAGCAAGCATCCCAAAATAATAAAA 57.455 29.630 0.00 0.00 0.00 1.52
1572 1907 2.856222 AGTAGCAAGCAAGCTGTTCTT 58.144 42.857 12.54 0.00 46.11 2.52
1627 1962 4.546829 AAGCATACCGTTCTCCTTGTAA 57.453 40.909 0.00 0.00 0.00 2.41
1658 1993 9.528489 ACCCAACAGTGTAAATAAATAGATGTT 57.472 29.630 0.00 0.00 0.00 2.71
1701 2040 7.106239 TGCAGACTAAAAAGAAATAGAGGGAG 58.894 38.462 0.00 0.00 0.00 4.30
1702 2041 7.016153 TGCAGACTAAAAAGAAATAGAGGGA 57.984 36.000 0.00 0.00 0.00 4.20
1703 2042 7.872113 ATGCAGACTAAAAAGAAATAGAGGG 57.128 36.000 0.00 0.00 0.00 4.30
1719 2058 9.624373 ACTTTGATCAAATCTTATATGCAGACT 57.376 29.630 20.76 0.00 0.00 3.24
1720 2059 9.875675 GACTTTGATCAAATCTTATATGCAGAC 57.124 33.333 20.76 2.27 0.00 3.51
1721 2060 9.617523 TGACTTTGATCAAATCTTATATGCAGA 57.382 29.630 20.76 0.00 0.00 4.26
1888 2227 8.836959 GTCAAACCTTGTTAACTTTGACTAAG 57.163 34.615 27.39 14.42 44.69 2.18
1892 2231 7.810759 TCAAAGTCAAACCTTGTTAACTTTGAC 59.189 33.333 27.41 27.41 46.09 3.18
1894 2233 7.062956 GGTCAAAGTCAAACCTTGTTAACTTTG 59.937 37.037 24.37 24.37 45.12 2.77
1895 2234 7.094631 GGTCAAAGTCAAACCTTGTTAACTTT 58.905 34.615 7.22 11.53 36.35 2.66
1896 2235 6.209788 TGGTCAAAGTCAAACCTTGTTAACTT 59.790 34.615 7.22 0.00 34.05 2.66
1897 2236 5.712917 TGGTCAAAGTCAAACCTTGTTAACT 59.287 36.000 7.22 0.00 34.05 2.24
1898 2237 5.956642 TGGTCAAAGTCAAACCTTGTTAAC 58.043 37.500 0.00 0.00 34.05 2.01
1899 2238 6.591750 TTGGTCAAAGTCAAACCTTGTTAA 57.408 33.333 0.00 0.00 34.05 2.01
1900 2239 6.591750 TTTGGTCAAAGTCAAACCTTGTTA 57.408 33.333 0.00 0.00 34.05 2.41
1901 2240 5.476091 TTTGGTCAAAGTCAAACCTTGTT 57.524 34.783 0.00 0.00 34.05 2.83
1902 2241 5.422012 AGATTTGGTCAAAGTCAAACCTTGT 59.578 36.000 2.55 0.00 35.97 3.16
1903 2242 5.906073 AGATTTGGTCAAAGTCAAACCTTG 58.094 37.500 2.55 0.00 35.97 3.61
1904 2243 6.544928 AAGATTTGGTCAAAGTCAAACCTT 57.455 33.333 2.55 0.00 33.29 3.50
1905 2244 7.839680 ATAAGATTTGGTCAAAGTCAAACCT 57.160 32.000 2.55 0.00 35.97 3.50
1906 2245 9.573133 CATATAAGATTTGGTCAAAGTCAAACC 57.427 33.333 2.55 0.00 35.97 3.27
1907 2246 9.076596 GCATATAAGATTTGGTCAAAGTCAAAC 57.923 33.333 2.55 0.00 35.97 2.93
1908 2247 8.801299 TGCATATAAGATTTGGTCAAAGTCAAA 58.199 29.630 2.55 0.00 37.29 2.69
1909 2248 8.347004 TGCATATAAGATTTGGTCAAAGTCAA 57.653 30.769 2.55 0.00 33.32 3.18
1910 2249 7.828717 TCTGCATATAAGATTTGGTCAAAGTCA 59.171 33.333 2.55 0.00 33.32 3.41
1911 2250 8.125448 GTCTGCATATAAGATTTGGTCAAAGTC 58.875 37.037 2.55 1.51 33.32 3.01
1912 2251 7.831193 AGTCTGCATATAAGATTTGGTCAAAGT 59.169 33.333 2.55 0.00 33.32 2.66
1913 2252 8.218338 AGTCTGCATATAAGATTTGGTCAAAG 57.782 34.615 2.55 0.00 33.32 2.77
1914 2253 9.679661 TTAGTCTGCATATAAGATTTGGTCAAA 57.320 29.630 0.00 0.00 34.46 2.69
1915 2254 9.679661 TTTAGTCTGCATATAAGATTTGGTCAA 57.320 29.630 0.00 0.00 0.00 3.18
1916 2255 9.679661 TTTTAGTCTGCATATAAGATTTGGTCA 57.320 29.630 0.00 0.00 0.00 4.02
1924 2263 8.879759 CCGTTTCTTTTTAGTCTGCATATAAGA 58.120 33.333 0.00 0.00 0.00 2.10
1925 2264 8.879759 TCCGTTTCTTTTTAGTCTGCATATAAG 58.120 33.333 0.00 0.00 0.00 1.73
1926 2265 8.780846 TCCGTTTCTTTTTAGTCTGCATATAA 57.219 30.769 0.00 0.00 0.00 0.98
1927 2266 7.494625 CCTCCGTTTCTTTTTAGTCTGCATATA 59.505 37.037 0.00 0.00 0.00 0.86
1928 2267 6.316390 CCTCCGTTTCTTTTTAGTCTGCATAT 59.684 38.462 0.00 0.00 0.00 1.78
1929 2268 5.642063 CCTCCGTTTCTTTTTAGTCTGCATA 59.358 40.000 0.00 0.00 0.00 3.14
1930 2269 4.455877 CCTCCGTTTCTTTTTAGTCTGCAT 59.544 41.667 0.00 0.00 0.00 3.96
1931 2270 3.813166 CCTCCGTTTCTTTTTAGTCTGCA 59.187 43.478 0.00 0.00 0.00 4.41
1932 2271 3.188667 CCCTCCGTTTCTTTTTAGTCTGC 59.811 47.826 0.00 0.00 0.00 4.26
1933 2272 4.638304 TCCCTCCGTTTCTTTTTAGTCTG 58.362 43.478 0.00 0.00 0.00 3.51
1934 2273 4.347292 ACTCCCTCCGTTTCTTTTTAGTCT 59.653 41.667 0.00 0.00 0.00 3.24
1935 2274 4.639334 ACTCCCTCCGTTTCTTTTTAGTC 58.361 43.478 0.00 0.00 0.00 2.59
1936 2275 4.701651 ACTCCCTCCGTTTCTTTTTAGT 57.298 40.909 0.00 0.00 0.00 2.24
1937 2276 6.171213 ACATACTCCCTCCGTTTCTTTTTAG 58.829 40.000 0.00 0.00 0.00 1.85
1938 2277 6.117975 ACATACTCCCTCCGTTTCTTTTTA 57.882 37.500 0.00 0.00 0.00 1.52
1939 2278 4.981812 ACATACTCCCTCCGTTTCTTTTT 58.018 39.130 0.00 0.00 0.00 1.94
1940 2279 4.635699 ACATACTCCCTCCGTTTCTTTT 57.364 40.909 0.00 0.00 0.00 2.27
1941 2280 4.776308 AGTACATACTCCCTCCGTTTCTTT 59.224 41.667 0.00 0.00 0.00 2.52
1942 2281 4.351127 AGTACATACTCCCTCCGTTTCTT 58.649 43.478 0.00 0.00 0.00 2.52
1943 2282 3.978610 AGTACATACTCCCTCCGTTTCT 58.021 45.455 0.00 0.00 0.00 2.52
1944 2283 4.641989 TGTAGTACATACTCCCTCCGTTTC 59.358 45.833 0.00 0.00 37.73 2.78
1945 2284 4.603131 TGTAGTACATACTCCCTCCGTTT 58.397 43.478 0.00 0.00 37.73 3.60
1946 2285 4.205587 CTGTAGTACATACTCCCTCCGTT 58.794 47.826 2.82 0.00 37.73 4.44
1947 2286 3.818180 CTGTAGTACATACTCCCTCCGT 58.182 50.000 2.82 0.00 37.73 4.69
1948 2287 2.553172 GCTGTAGTACATACTCCCTCCG 59.447 54.545 2.82 0.00 37.73 4.63
1949 2288 3.822167 GAGCTGTAGTACATACTCCCTCC 59.178 52.174 17.04 0.24 37.73 4.30
1950 2289 4.462133 TGAGCTGTAGTACATACTCCCTC 58.538 47.826 21.75 13.37 37.73 4.30
1951 2290 4.521536 TGAGCTGTAGTACATACTCCCT 57.478 45.455 21.75 7.03 37.73 4.20
1952 2291 5.793030 ATTGAGCTGTAGTACATACTCCC 57.207 43.478 21.75 7.62 37.73 4.30
1953 2292 8.494016 AAAAATTGAGCTGTAGTACATACTCC 57.506 34.615 21.75 10.82 37.73 3.85
2000 2339 4.469657 TCACCCTAGAGCATTGTGTTTTT 58.530 39.130 0.00 0.00 0.00 1.94
2005 2349 4.944619 TCTATCACCCTAGAGCATTGTG 57.055 45.455 0.00 0.00 0.00 3.33
2050 2394 6.560253 AGTTCCACTAAACAAATGCTACTG 57.440 37.500 0.00 0.00 0.00 2.74
2051 2395 8.154856 TCTTAGTTCCACTAAACAAATGCTACT 58.845 33.333 0.00 0.00 39.89 2.57
2367 2724 3.410631 TTGGCAGTCTATTGGTCGAAA 57.589 42.857 0.00 0.00 0.00 3.46
2411 2768 7.707624 AGCTTCAATGAATTCCTGATAACAA 57.292 32.000 2.27 0.00 0.00 2.83
2447 2804 3.832276 TGCTGCTAAAAATGTAAAGCCG 58.168 40.909 0.00 0.00 33.99 5.52
2632 2989 9.617975 GAAATCTTGGATGAAAAACTGTAAGAG 57.382 33.333 0.00 0.00 37.43 2.85
2643 3000 6.725369 TCCATGGAAAGAAATCTTGGATGAAA 59.275 34.615 13.46 0.00 36.12 2.69
2715 3936 4.157840 AGTGTCCAACAAAAAGAGTGGTTC 59.842 41.667 0.00 0.00 0.00 3.62
2879 4104 4.700213 CCGTCCCAAAATAAGTGTCTCAAT 59.300 41.667 0.00 0.00 0.00 2.57
2897 4122 0.547553 AGAGAGTACTCCCTCCGTCC 59.452 60.000 19.38 0.00 43.53 4.79
2901 4126 1.495574 TGGCTAGAGAGTACTCCCTCC 59.504 57.143 19.38 11.66 43.53 4.30
2902 4127 2.578786 GTGGCTAGAGAGTACTCCCTC 58.421 57.143 19.38 11.32 43.53 4.30
3028 4255 1.139163 GGCACCAAAACGCAATTCAG 58.861 50.000 0.00 0.00 0.00 3.02
3286 4513 5.865552 CACAATAAATTCAGAACAAGGCCAG 59.134 40.000 5.01 0.00 0.00 4.85
3313 4540 0.249398 AAAGTTCGATGGACGGAGGG 59.751 55.000 0.00 0.00 42.82 4.30
3371 4602 3.057946 GTCTCCCATTTCAAACTGCAGAC 60.058 47.826 23.35 0.00 0.00 3.51
3463 4698 3.641434 ATGTTGCATCTACAGGAGCTT 57.359 42.857 0.00 0.00 0.00 3.74
3793 5028 3.001939 CGCTTACGGTTTCTGTTTTGTCT 59.998 43.478 0.00 0.00 34.97 3.41
3907 5143 8.197439 CCAAAACATATATCCAAAAGAGGTTCC 58.803 37.037 0.00 0.00 0.00 3.62
3934 5170 9.852091 GGGGAACATAAAATATACTACTAGTCG 57.148 37.037 0.00 0.00 0.00 4.18
3947 5183 6.673537 AGTCATGGAAATGGGGAACATAAAAT 59.326 34.615 0.00 0.00 39.40 1.82
4000 5237 4.046286 TCCCAACATTGCCAAAGTCTAT 57.954 40.909 0.00 0.00 0.00 1.98
4108 5346 1.480545 ACTTGAGGCACCAAAACAACC 59.519 47.619 0.00 0.00 0.00 3.77
4153 5391 3.251004 GTGTGTCTGTCCCATTTGAAGTC 59.749 47.826 0.00 0.00 0.00 3.01
4175 5413 5.902613 AACCACTACAACATCATCCATTG 57.097 39.130 0.00 0.00 0.00 2.82
4188 5426 6.891388 TCCTTTTTAGTGAGAAACCACTACA 58.109 36.000 0.00 0.00 45.98 2.74
4201 5439 9.323985 TCCACATTTTTCATTTCCTTTTTAGTG 57.676 29.630 0.00 0.00 0.00 2.74
4221 5459 6.096846 GCACTTTTCCCTACATAATTCCACAT 59.903 38.462 0.00 0.00 0.00 3.21
4222 5460 5.417580 GCACTTTTCCCTACATAATTCCACA 59.582 40.000 0.00 0.00 0.00 4.17
4223 5461 5.652452 AGCACTTTTCCCTACATAATTCCAC 59.348 40.000 0.00 0.00 0.00 4.02
4224 5462 5.826643 AGCACTTTTCCCTACATAATTCCA 58.173 37.500 0.00 0.00 0.00 3.53
4225 5463 7.875327 TTAGCACTTTTCCCTACATAATTCC 57.125 36.000 0.00 0.00 0.00 3.01
4335 5581 6.757897 TCGCATCAATGTTCCTATTTCTTT 57.242 33.333 0.00 0.00 0.00 2.52
4338 5584 9.683069 ATTATTTCGCATCAATGTTCCTATTTC 57.317 29.630 0.00 0.00 0.00 2.17
4352 5599 5.695851 ACCCAATCTCATTATTTCGCATC 57.304 39.130 0.00 0.00 0.00 3.91
4489 5756 6.241645 TCTCGCAATCTATCTAGAATCAGGA 58.758 40.000 0.00 0.00 35.69 3.86
4509 5776 6.436843 AGGCATTTTAACTAACCAATCTCG 57.563 37.500 0.00 0.00 0.00 4.04
4568 5836 4.265893 TGCACAAGTGGAAACAGAGTAAA 58.734 39.130 2.00 0.00 44.46 2.01
4571 5839 2.418368 TGCACAAGTGGAAACAGAGT 57.582 45.000 2.00 0.00 44.46 3.24
4572 5840 3.781079 TTTGCACAAGTGGAAACAGAG 57.219 42.857 14.58 0.00 44.10 3.35
4584 5853 3.023119 ACATGACTCTGGTTTTGCACAA 58.977 40.909 0.00 0.00 0.00 3.33
4604 5873 3.081804 ACCCAATTCGGAGATTCACAAC 58.918 45.455 0.00 0.00 36.56 3.32
4704 5980 7.685481 TGTTTTGGTCCTTGAACTATATCTCA 58.315 34.615 0.00 0.00 0.00 3.27
4716 5992 6.482973 ACTGCAAAAATATGTTTTGGTCCTTG 59.517 34.615 17.29 5.05 39.19 3.61
4760 6037 4.715527 ATAGGGTTGTACGACTTCACTC 57.284 45.455 13.01 0.00 0.00 3.51
4769 6046 7.619964 AATGAAAACCTAATAGGGTTGTACG 57.380 36.000 10.82 0.00 46.62 3.67
4800 6077 5.828299 TGACACCCTAAACAACAGAAAAG 57.172 39.130 0.00 0.00 0.00 2.27
4801 6078 6.568869 CAATGACACCCTAAACAACAGAAAA 58.431 36.000 0.00 0.00 0.00 2.29
4830 6108 1.952296 GCTCCAATCCGCTCATTGATT 59.048 47.619 6.15 0.00 36.03 2.57
4842 6120 1.450312 CACTCCGGTGGCTCCAATC 60.450 63.158 8.63 0.00 39.59 2.67
4854 6132 2.069273 CACTCTTTGTTAGCCACTCCG 58.931 52.381 0.00 0.00 0.00 4.63
4926 6204 3.837146 TCAAGCTGAGAGATCAAACCTCT 59.163 43.478 0.00 0.00 43.16 3.69
4942 6220 3.895232 ACATACTCAATCGGTCAAGCT 57.105 42.857 0.00 0.00 0.00 3.74
4960 6238 6.926826 TCGCTTTTCTCACAGAGTAATAAACA 59.073 34.615 0.00 0.00 0.00 2.83
4965 6243 4.932200 CCTTCGCTTTTCTCACAGAGTAAT 59.068 41.667 0.00 0.00 0.00 1.89
4970 6248 1.202639 TGCCTTCGCTTTTCTCACAGA 60.203 47.619 0.00 0.00 35.36 3.41
4975 6253 2.997485 AATGTGCCTTCGCTTTTCTC 57.003 45.000 0.00 0.00 35.36 2.87
5021 6299 3.732943 CAGTTATTCGGAAGCGTTGAAC 58.267 45.455 0.00 0.00 0.00 3.18
5126 6404 7.817418 TTAGAGATACAACCAAAGCTTTGTT 57.183 32.000 31.67 23.41 37.19 2.83
5168 6446 8.697507 AGAAACATGAGAGTTTGTTTAAGGAT 57.302 30.769 0.00 0.00 43.95 3.24
5213 6491 4.040829 ACCATGTGAAGTCAAGTCATGAGA 59.959 41.667 0.00 0.00 39.19 3.27
5249 6527 1.594862 CTCTTAATACCAGCACTGCGC 59.405 52.381 0.00 0.00 42.91 6.09
5294 6572 4.495019 GCGTCAAACATGTTGTGTACAGAA 60.495 41.667 12.82 0.45 41.14 3.02
5301 6579 3.600717 TGTAGCGTCAAACATGTTGTG 57.399 42.857 12.82 12.31 0.00 3.33
5341 6619 1.514678 GCTTTGCATCCACGTCACCA 61.515 55.000 0.00 0.00 0.00 4.17
5407 6685 1.831736 CAGAAGGTAACCTCACCCGAT 59.168 52.381 0.00 0.00 39.62 4.18
5499 6777 0.995024 GCCCATGGGACTAGGCATAT 59.005 55.000 36.00 0.00 45.07 1.78
5513 6791 2.130193 ACAGTCCACATATGAGCCCAT 58.870 47.619 10.38 0.00 36.81 4.00
5560 6838 0.248012 TTCCGCCTATGCTGAACGAA 59.752 50.000 0.00 0.00 36.03 3.85
5671 6949 7.953305 ATCACATTCAAAATTTATGACGACG 57.047 32.000 6.46 0.00 0.00 5.12
5683 6961 8.655970 CATCGTGACTACTTATCACATTCAAAA 58.344 33.333 6.01 0.00 45.64 2.44
5702 6980 6.375736 AGTCTTCTGAGTTCTAATCATCGTGA 59.624 38.462 0.00 0.00 0.00 4.35
5703 6981 6.559810 AGTCTTCTGAGTTCTAATCATCGTG 58.440 40.000 0.00 0.00 0.00 4.35
5704 6982 6.767524 AGTCTTCTGAGTTCTAATCATCGT 57.232 37.500 0.00 0.00 0.00 3.73
5705 6983 6.475076 CCAAGTCTTCTGAGTTCTAATCATCG 59.525 42.308 0.00 0.00 33.89 3.84
5706 6984 6.257630 GCCAAGTCTTCTGAGTTCTAATCATC 59.742 42.308 0.00 0.00 33.89 2.92
5707 6985 6.070309 AGCCAAGTCTTCTGAGTTCTAATCAT 60.070 38.462 0.00 0.00 33.89 2.45
5708 6986 5.247110 AGCCAAGTCTTCTGAGTTCTAATCA 59.753 40.000 0.00 0.00 33.89 2.57
5712 6990 5.571285 TCTAGCCAAGTCTTCTGAGTTCTA 58.429 41.667 0.00 0.00 33.89 2.10
5720 6998 6.360370 TTGTTGTATCTAGCCAAGTCTTCT 57.640 37.500 0.00 0.00 0.00 2.85
5725 7003 6.151144 GGTCAATTTGTTGTATCTAGCCAAGT 59.849 38.462 0.00 0.00 0.00 3.16
5762 7040 5.812642 ACTAGTTCGAAATGAATACAGCAGG 59.187 40.000 8.63 0.00 39.21 4.85
5763 7041 6.893958 ACTAGTTCGAAATGAATACAGCAG 57.106 37.500 8.63 0.00 39.21 4.24
5783 7061 6.321945 TGCTAACGGATACAAGATGGTAACTA 59.678 38.462 0.00 0.00 37.61 2.24
5801 7079 0.519519 TGCCGGAATTTGTGCTAACG 59.480 50.000 5.05 0.00 0.00 3.18
5850 7129 6.140110 CGTATGTTTAAAAACCCACTGAGTG 58.860 40.000 5.42 5.42 38.11 3.51
5873 7152 2.203800 TATTACAAGAGCGAGCCACG 57.796 50.000 0.00 0.00 45.66 4.94
5877 7156 4.785417 ACTCGTATATTACAAGAGCGAGC 58.215 43.478 10.36 0.00 45.32 5.03
5878 7157 7.119605 ACTACTCGTATATTACAAGAGCGAG 57.880 40.000 9.10 9.10 46.37 5.03
5879 7158 7.488187 AACTACTCGTATATTACAAGAGCGA 57.512 36.000 0.00 0.00 32.60 4.93
5880 7159 7.357368 GCAAACTACTCGTATATTACAAGAGCG 60.357 40.741 0.00 0.00 32.60 5.03
6007 7286 6.821665 GCCTCGCCTTACAAATATATATTGGA 59.178 38.462 15.53 2.13 32.02 3.53
6051 7330 8.633561 GCATCCAGAGCTACCTTTTAATTAATT 58.366 33.333 5.89 5.89 0.00 1.40
6064 7343 5.358160 AGGTTTTATTTGCATCCAGAGCTAC 59.642 40.000 0.00 0.00 0.00 3.58
6065 7344 5.509498 AGGTTTTATTTGCATCCAGAGCTA 58.491 37.500 0.00 0.00 0.00 3.32
6114 7393 6.862608 CGGAAGATGATTGAAATTGTGTGAAA 59.137 34.615 0.00 0.00 0.00 2.69
6142 7422 2.563179 ACCTTGAGAATGTACTGCTCGT 59.437 45.455 0.00 0.00 0.00 4.18
6177 7457 1.136305 TCCGCTAATACAGTGAGCCAC 59.864 52.381 0.00 0.00 36.86 5.01
6185 7465 3.966154 AGACGTGAATCCGCTAATACAG 58.034 45.455 0.00 0.00 0.00 2.74
6236 7516 4.883083 CAAGTAGTGCTCTGTCTTACCAA 58.117 43.478 0.00 0.00 0.00 3.67
6288 7568 2.842496 TCAGATCTCATGGGAGCAAACT 59.158 45.455 14.37 0.00 41.13 2.66
6326 7606 2.431954 ATCCTGCATGACAAAGAGGG 57.568 50.000 0.00 0.00 0.00 4.30
6332 7612 3.053768 TCACCCAATATCCTGCATGACAA 60.054 43.478 0.00 0.00 0.00 3.18
6347 7627 1.991813 TCCCATGAAGACATCACCCAA 59.008 47.619 0.00 0.00 41.93 4.12
6382 7662 5.597806 ACACTCATCTTGTCGTAGTCAAAA 58.402 37.500 0.00 0.00 34.85 2.44
6417 7697 4.395231 TGAAATGCTTCTCTCATGCAGAAG 59.605 41.667 21.49 21.49 46.71 2.85
6463 7743 2.625314 TGTCGAAATGGCCATGTTTTGA 59.375 40.909 21.63 17.66 0.00 2.69
6506 7786 1.388093 GCTATCATGCACGCAGATACG 59.612 52.381 0.00 0.00 39.50 3.06
6543 7823 1.265095 TGAGACGGACACGACTAACAC 59.735 52.381 0.00 0.00 44.59 3.32
6554 7834 4.868171 TGTGCTATATTTTGTGAGACGGAC 59.132 41.667 0.00 0.00 0.00 4.79
6618 7898 4.957684 AGGTATTGGCTAGGTACATGTC 57.042 45.455 0.00 0.00 0.00 3.06
6627 7907 0.657840 GTGCGCAAGGTATTGGCTAG 59.342 55.000 14.00 0.00 36.88 3.42
6742 8023 5.313623 CAACGAACAATGTCGATAAACTCC 58.686 41.667 11.02 0.00 43.86 3.85
6762 8043 1.239347 GAGGGTGAAGTCTTGGCAAC 58.761 55.000 0.00 0.00 0.00 4.17
6781 8062 2.048023 ATGCCACATGACTTGCCGG 61.048 57.895 0.00 0.00 0.00 6.13
6784 8065 0.883153 TGACATGCCACATGACTTGC 59.117 50.000 14.17 0.00 0.00 4.01
6786 8067 2.430465 GACTGACATGCCACATGACTT 58.570 47.619 14.17 0.47 0.00 3.01
6794 8075 1.293179 CACTCCGACTGACATGCCA 59.707 57.895 0.00 0.00 0.00 4.92
6803 8084 1.379443 TCCCGCATACACTCCGACT 60.379 57.895 0.00 0.00 0.00 4.18
6804 8085 1.065928 CTCCCGCATACACTCCGAC 59.934 63.158 0.00 0.00 0.00 4.79
6819 8100 3.543680 TGGATCATTCCGACTTTCTCC 57.456 47.619 0.00 0.00 45.89 3.71
6821 8102 4.559862 ACTTGGATCATTCCGACTTTCT 57.440 40.909 0.00 0.00 45.89 2.52
6824 8105 5.160607 TGTAACTTGGATCATTCCGACTT 57.839 39.130 0.00 0.00 45.89 3.01
6828 8109 2.285220 CGCTGTAACTTGGATCATTCCG 59.715 50.000 0.00 0.00 45.89 4.30
6832 8113 3.449018 ACTCTCGCTGTAACTTGGATCAT 59.551 43.478 0.00 0.00 0.00 2.45
6845 8126 1.202568 CGCACAAACACTCTCGCTG 59.797 57.895 0.00 0.00 0.00 5.18
6847 8128 1.083401 CACGCACAAACACTCTCGC 60.083 57.895 0.00 0.00 0.00 5.03
6848 8129 0.043053 CACACGCACAAACACTCTCG 60.043 55.000 0.00 0.00 0.00 4.04
6865 8146 2.747446 ACTCTTTCTCTCTCTCTCGCAC 59.253 50.000 0.00 0.00 0.00 5.34
6866 8147 3.006940 GACTCTTTCTCTCTCTCTCGCA 58.993 50.000 0.00 0.00 0.00 5.10
6867 8148 3.006940 TGACTCTTTCTCTCTCTCTCGC 58.993 50.000 0.00 0.00 0.00 5.03
6868 8149 4.000325 TGTGACTCTTTCTCTCTCTCTCG 59.000 47.826 0.00 0.00 0.00 4.04
6881 8162 0.972883 GCACTCCCTCTGTGACTCTT 59.027 55.000 0.00 0.00 37.60 2.85
6899 8180 7.914346 ACACAATCTCTGTTAACTACGTATAGC 59.086 37.037 7.22 0.00 35.47 2.97
6906 8187 7.916552 ACAAACACACAATCTCTGTTAACTAC 58.083 34.615 7.22 0.00 35.47 2.73
6910 8191 7.851387 TGTACAAACACACAATCTCTGTTAA 57.149 32.000 0.00 0.00 35.47 2.01
6921 8202 3.243035 GCATGCTCTTGTACAAACACACA 60.243 43.478 11.37 4.57 34.61 3.72
6922 8203 3.300009 GCATGCTCTTGTACAAACACAC 58.700 45.455 11.37 1.50 34.61 3.82
6934 8215 1.680735 CCTCTCTCTACGCATGCTCTT 59.319 52.381 17.13 2.16 0.00 2.85
6936 8217 0.313672 CCCTCTCTCTACGCATGCTC 59.686 60.000 17.13 0.00 0.00 4.26
6937 8218 0.106469 TCCCTCTCTCTACGCATGCT 60.106 55.000 17.13 5.50 0.00 3.79
6944 8225 2.025699 ACACCACTCTCCCTCTCTCTAC 60.026 54.545 0.00 0.00 0.00 2.59
6971 8252 0.628522 CTCTGTCTCCCCCTCTCTCA 59.371 60.000 0.00 0.00 0.00 3.27
6977 8258 1.014804 ATCTGTCTCTGTCTCCCCCT 58.985 55.000 0.00 0.00 0.00 4.79
6983 8264 5.163353 TGTCTCGATCTATCTGTCTCTGTCT 60.163 44.000 0.00 0.00 0.00 3.41
6986 8267 5.056480 AGTGTCTCGATCTATCTGTCTCTG 58.944 45.833 0.00 0.00 0.00 3.35
6989 8270 6.169557 ACTAGTGTCTCGATCTATCTGTCT 57.830 41.667 0.00 0.00 0.00 3.41
7038 8319 3.713764 AGCTTAGTCATAACTGCCTCCAT 59.286 43.478 0.00 0.00 36.92 3.41
7043 8324 4.697514 TGATCAGCTTAGTCATAACTGCC 58.302 43.478 0.00 0.00 36.92 4.85
7050 8331 3.868077 GCGACTTTGATCAGCTTAGTCAT 59.132 43.478 19.99 0.00 36.00 3.06
7054 8335 2.898705 AGGCGACTTTGATCAGCTTAG 58.101 47.619 0.00 0.00 37.44 2.18
7056 8337 3.944476 AGGCGACTTTGATCAGCTT 57.056 47.368 0.00 0.00 37.44 3.74
7068 8349 3.060473 GTGCTCGATGTATTAAAGGCGAC 60.060 47.826 0.00 0.00 0.00 5.19
7071 8352 4.786609 GCTTGTGCTCGATGTATTAAAGGC 60.787 45.833 0.00 0.00 36.03 4.35
7085 8366 2.982470 GCAATGTTAACTGCTTGTGCTC 59.018 45.455 11.49 0.00 40.48 4.26
7100 8381 2.036475 CCGGAGCTGTCTATAGCAATGT 59.964 50.000 0.00 0.00 46.07 2.71
7115 8396 0.108281 GTTCTAACCACCTCCGGAGC 60.108 60.000 26.87 4.20 0.00 4.70
7157 8438 7.170489 GGTTATAGAATAACAACCGCCTCTAAC 59.830 40.741 10.92 0.00 31.80 2.34
7186 8467 2.747177 GAGAAATTTAAGGGGTGGGGG 58.253 52.381 0.00 0.00 0.00 5.40
7187 8468 2.291346 ACGAGAAATTTAAGGGGTGGGG 60.291 50.000 0.00 0.00 0.00 4.96
7191 8472 3.749609 CGTTGACGAGAAATTTAAGGGGT 59.250 43.478 0.00 0.00 43.02 4.95
7193 8474 3.187637 TGCGTTGACGAGAAATTTAAGGG 59.812 43.478 7.85 0.00 43.02 3.95
7213 8494 6.295857 CAGTTGTAAAATAAAAACCGCATGC 58.704 36.000 7.91 7.91 0.00 4.06
7224 8509 5.178623 CCACACTCGAGCAGTTGTAAAATAA 59.821 40.000 13.61 0.00 30.26 1.40
7234 8519 3.231889 CTGGCCACACTCGAGCAGT 62.232 63.158 13.61 8.96 34.67 4.40
7237 8522 2.029844 GAACTGGCCACACTCGAGC 61.030 63.158 13.61 0.00 0.00 5.03
7240 8525 1.374758 GAGGAACTGGCCACACTCG 60.375 63.158 0.00 0.00 41.55 4.18
7242 8527 2.743718 CGAGGAACTGGCCACACT 59.256 61.111 0.00 0.00 41.55 3.55
7245 8530 4.410400 CCCCGAGGAACTGGCCAC 62.410 72.222 0.00 0.00 41.55 5.01
7264 8550 7.829378 AGAAAAATAGACTAGCAAGGTTACG 57.171 36.000 0.00 0.00 0.00 3.18
7288 8574 0.041090 GGAGGGCAAGGGAAATGGAA 59.959 55.000 0.00 0.00 0.00 3.53
7290 8576 1.381735 GGGAGGGCAAGGGAAATGG 60.382 63.158 0.00 0.00 0.00 3.16
7291 8577 0.972471 GTGGGAGGGCAAGGGAAATG 60.972 60.000 0.00 0.00 0.00 2.32
7293 8579 2.851045 GTGGGAGGGCAAGGGAAA 59.149 61.111 0.00 0.00 0.00 3.13
7303 8589 2.606519 TCCGTGGAAGGTGGGAGG 60.607 66.667 0.00 0.00 0.00 4.30
7306 8592 1.149627 TTTGTCCGTGGAAGGTGGG 59.850 57.895 0.00 0.00 0.00 4.61
7309 8595 1.149854 GGGTTTGTCCGTGGAAGGT 59.850 57.895 0.00 0.00 37.00 3.50
7311 8597 1.944430 GCTAGGGTTTGTCCGTGGAAG 60.944 57.143 0.00 0.00 35.09 3.46
7320 8606 0.181824 ACGTTGGTGCTAGGGTTTGT 59.818 50.000 0.00 0.00 0.00 2.83
7327 8613 4.598257 CCAGGACGTTGGTGCTAG 57.402 61.111 0.00 0.00 43.67 3.42
7334 8620 1.626654 GACATGCGACCAGGACGTTG 61.627 60.000 13.01 12.63 0.00 4.10
7336 8622 2.261671 GACATGCGACCAGGACGT 59.738 61.111 13.01 0.00 0.00 4.34
7337 8623 2.509336 GGACATGCGACCAGGACG 60.509 66.667 6.99 6.99 0.00 4.79
7339 8625 4.451150 GCGGACATGCGACCAGGA 62.451 66.667 0.00 0.00 0.00 3.86
7343 8629 4.856801 ATGGGCGGACATGCGACC 62.857 66.667 11.26 11.26 35.06 4.79
7347 8633 1.750399 AACAGATGGGCGGACATGC 60.750 57.895 0.00 0.00 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.