Multiple sequence alignment - TraesCS3D01G224800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G224800 chr3D 100.000 2504 0 0 1 2504 305890455 305892958 0.000000e+00 4625
1 TraesCS3D01G224800 chr3A 90.263 1900 88 30 634 2503 424080084 424081916 0.000000e+00 2394
2 TraesCS3D01G224800 chr3A 92.398 171 9 1 246 412 424079846 424080016 8.950000e-60 241
3 TraesCS3D01G224800 chr3B 90.348 1523 88 28 247 1719 415759704 415758191 0.000000e+00 1943
4 TraesCS3D01G224800 chr3B 78.618 463 66 28 2059 2499 499092796 499093247 2.450000e-70 276
5 TraesCS3D01G224800 chr6D 84.332 434 40 17 2093 2500 434475352 434474921 1.400000e-107 399
6 TraesCS3D01G224800 chr6D 81.672 311 31 11 2139 2436 446644541 446644838 4.160000e-58 235
7 TraesCS3D01G224800 chr1D 82.516 469 62 14 2048 2500 492442165 492441701 6.490000e-106 394
8 TraesCS3D01G224800 chr6B 83.295 437 46 18 2093 2504 657642908 657642474 6.540000e-101 377
9 TraesCS3D01G224800 chr5D 81.062 433 54 10 2093 2499 30945644 30945214 1.120000e-83 320
10 TraesCS3D01G224800 chr5D 81.062 433 54 10 2093 2499 30948072 30947642 1.120000e-83 320
11 TraesCS3D01G224800 chr5D 80.831 433 55 10 2093 2499 30946858 30946428 5.200000e-82 315
12 TraesCS3D01G224800 chr7A 76.750 400 60 29 2090 2465 711919836 711920226 2.540000e-45 193
13 TraesCS3D01G224800 chr1A 76.190 441 58 33 2093 2500 559930467 559930041 3.290000e-44 189
14 TraesCS3D01G224800 chr5B 74.419 473 78 31 2059 2499 16172208 16171747 1.990000e-36 163
15 TraesCS3D01G224800 chr6A 83.898 118 15 2 473 589 903443 903557 2.630000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G224800 chr3D 305890455 305892958 2503 False 4625.000000 4625 100.0000 1 2504 1 chr3D.!!$F1 2503
1 TraesCS3D01G224800 chr3A 424079846 424081916 2070 False 1317.500000 2394 91.3305 246 2503 2 chr3A.!!$F1 2257
2 TraesCS3D01G224800 chr3B 415758191 415759704 1513 True 1943.000000 1943 90.3480 247 1719 1 chr3B.!!$R1 1472
3 TraesCS3D01G224800 chr5D 30945214 30948072 2858 True 318.333333 320 80.9850 2093 2499 3 chr5D.!!$R1 406

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
565 580 0.178843 ACTAACCACCCCACCATCCT 60.179 55.0 0.0 0.0 0.0 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2358 4874 0.033504 AAACCACGCACGATCTGACT 59.966 50.0 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.724305 ACACAAATTACAAGGTAGTGTAGTG 57.276 36.000 0.00 0.00 37.01 2.74
25 26 6.708949 ACACAAATTACAAGGTAGTGTAGTGG 59.291 38.462 0.00 0.00 37.01 4.00
26 27 5.704053 ACAAATTACAAGGTAGTGTAGTGGC 59.296 40.000 0.00 0.00 35.47 5.01
27 28 5.757099 AATTACAAGGTAGTGTAGTGGCT 57.243 39.130 0.00 0.00 35.47 4.75
28 29 6.862469 AATTACAAGGTAGTGTAGTGGCTA 57.138 37.500 0.00 0.00 35.47 3.93
29 30 7.433537 AATTACAAGGTAGTGTAGTGGCTAT 57.566 36.000 0.00 0.00 35.47 2.97
30 31 6.461110 TTACAAGGTAGTGTAGTGGCTATC 57.539 41.667 0.00 0.00 35.47 2.08
31 32 3.380637 ACAAGGTAGTGTAGTGGCTATCG 59.619 47.826 0.00 0.00 0.00 2.92
32 33 1.955080 AGGTAGTGTAGTGGCTATCGC 59.045 52.381 0.00 0.00 0.00 4.58
33 34 1.955080 GGTAGTGTAGTGGCTATCGCT 59.045 52.381 0.00 0.00 39.84 4.93
34 35 2.361438 GGTAGTGTAGTGGCTATCGCTT 59.639 50.000 0.00 0.00 37.42 4.68
35 36 2.586258 AGTGTAGTGGCTATCGCTTG 57.414 50.000 0.00 0.00 37.42 4.01
36 37 2.100197 AGTGTAGTGGCTATCGCTTGA 58.900 47.619 0.00 0.00 37.42 3.02
37 38 2.695666 AGTGTAGTGGCTATCGCTTGAT 59.304 45.455 0.00 0.00 37.42 2.57
38 39 2.797156 GTGTAGTGGCTATCGCTTGATG 59.203 50.000 0.00 0.00 37.42 3.07
39 40 1.795286 GTAGTGGCTATCGCTTGATGC 59.205 52.381 0.00 0.00 37.42 3.91
49 50 4.799473 CTTGATGCGTGCGTGGCG 62.799 66.667 0.00 0.00 0.00 5.69
67 68 3.253955 GCGGACTGCGTTCACATT 58.746 55.556 0.00 0.00 0.00 2.71
68 69 1.574428 GCGGACTGCGTTCACATTT 59.426 52.632 0.00 0.00 0.00 2.32
69 70 0.452784 GCGGACTGCGTTCACATTTC 60.453 55.000 0.00 0.00 0.00 2.17
70 71 1.148310 CGGACTGCGTTCACATTTCT 58.852 50.000 0.00 0.00 0.00 2.52
71 72 2.333926 CGGACTGCGTTCACATTTCTA 58.666 47.619 0.00 0.00 0.00 2.10
72 73 2.930040 CGGACTGCGTTCACATTTCTAT 59.070 45.455 0.00 0.00 0.00 1.98
73 74 4.109766 CGGACTGCGTTCACATTTCTATA 58.890 43.478 0.00 0.00 0.00 1.31
74 75 4.745125 CGGACTGCGTTCACATTTCTATAT 59.255 41.667 0.00 0.00 0.00 0.86
75 76 5.234329 CGGACTGCGTTCACATTTCTATATT 59.766 40.000 0.00 0.00 0.00 1.28
76 77 6.562270 CGGACTGCGTTCACATTTCTATATTC 60.562 42.308 0.00 0.00 0.00 1.75
77 78 6.480320 GGACTGCGTTCACATTTCTATATTCT 59.520 38.462 0.00 0.00 0.00 2.40
78 79 7.652105 GGACTGCGTTCACATTTCTATATTCTA 59.348 37.037 0.00 0.00 0.00 2.10
79 80 9.197694 GACTGCGTTCACATTTCTATATTCTAT 57.802 33.333 0.00 0.00 0.00 1.98
80 81 9.547753 ACTGCGTTCACATTTCTATATTCTATT 57.452 29.630 0.00 0.00 0.00 1.73
105 106 8.792830 TTTCTATTTCTATCCTTGTCAAGTGG 57.207 34.615 11.61 0.00 0.00 4.00
106 107 7.496346 TCTATTTCTATCCTTGTCAAGTGGT 57.504 36.000 11.61 2.47 0.00 4.16
107 108 8.603898 TCTATTTCTATCCTTGTCAAGTGGTA 57.396 34.615 11.61 3.45 0.00 3.25
108 109 8.475639 TCTATTTCTATCCTTGTCAAGTGGTAC 58.524 37.037 11.61 0.00 0.00 3.34
109 110 6.681729 TTTCTATCCTTGTCAAGTGGTACT 57.318 37.500 11.61 0.00 0.00 2.73
110 111 5.916661 TCTATCCTTGTCAAGTGGTACTC 57.083 43.478 11.61 0.00 0.00 2.59
111 112 5.330233 TCTATCCTTGTCAAGTGGTACTCA 58.670 41.667 11.61 0.00 0.00 3.41
112 113 3.746045 TCCTTGTCAAGTGGTACTCAC 57.254 47.619 11.61 6.42 46.39 3.51
124 125 4.945246 GTGGTACTCACACATAGGTATGG 58.055 47.826 8.95 0.00 45.39 2.74
125 126 3.964688 TGGTACTCACACATAGGTATGGG 59.035 47.826 0.00 0.00 42.72 4.00
126 127 3.323979 GGTACTCACACATAGGTATGGGG 59.676 52.174 4.30 0.00 41.37 4.96
127 128 1.768870 ACTCACACATAGGTATGGGGC 59.231 52.381 4.30 0.00 41.37 5.80
128 129 0.756294 TCACACATAGGTATGGGGCG 59.244 55.000 4.30 0.00 41.37 6.13
129 130 0.468226 CACACATAGGTATGGGGCGT 59.532 55.000 4.30 0.00 41.37 5.68
130 131 0.468226 ACACATAGGTATGGGGCGTG 59.532 55.000 4.30 0.00 41.37 5.34
131 132 0.250295 CACATAGGTATGGGGCGTGG 60.250 60.000 2.16 0.00 38.00 4.94
132 133 1.374947 CATAGGTATGGGGCGTGGG 59.625 63.158 0.00 0.00 0.00 4.61
133 134 2.526046 ATAGGTATGGGGCGTGGGC 61.526 63.158 0.00 0.00 38.90 5.36
134 135 2.983706 ATAGGTATGGGGCGTGGGCT 62.984 60.000 0.00 0.00 39.81 5.19
135 136 4.875713 GGTATGGGGCGTGGGCTG 62.876 72.222 0.00 0.00 39.81 4.85
142 143 3.064324 GGCGTGGGCTGCAGATTT 61.064 61.111 20.43 0.00 39.81 2.17
143 144 2.639327 GGCGTGGGCTGCAGATTTT 61.639 57.895 20.43 0.00 39.81 1.82
144 145 1.312371 GGCGTGGGCTGCAGATTTTA 61.312 55.000 20.43 0.00 39.81 1.52
145 146 0.525761 GCGTGGGCTGCAGATTTTAA 59.474 50.000 20.43 0.00 35.83 1.52
146 147 1.134946 GCGTGGGCTGCAGATTTTAAT 59.865 47.619 20.43 0.00 35.83 1.40
147 148 2.801063 CGTGGGCTGCAGATTTTAATG 58.199 47.619 20.43 0.00 0.00 1.90
148 149 2.480073 CGTGGGCTGCAGATTTTAATGG 60.480 50.000 20.43 0.00 0.00 3.16
149 150 2.760092 GTGGGCTGCAGATTTTAATGGA 59.240 45.455 20.43 0.00 0.00 3.41
150 151 3.025978 TGGGCTGCAGATTTTAATGGAG 58.974 45.455 20.43 0.00 37.87 3.86
151 152 3.290710 GGGCTGCAGATTTTAATGGAGA 58.709 45.455 20.43 0.00 37.06 3.71
152 153 3.701040 GGGCTGCAGATTTTAATGGAGAA 59.299 43.478 20.43 0.00 37.06 2.87
153 154 4.343239 GGGCTGCAGATTTTAATGGAGAAT 59.657 41.667 20.43 0.00 37.06 2.40
154 155 5.163374 GGGCTGCAGATTTTAATGGAGAATT 60.163 40.000 20.43 0.00 37.06 2.17
155 156 6.040842 GGGCTGCAGATTTTAATGGAGAATTA 59.959 38.462 20.43 0.00 37.06 1.40
156 157 7.417797 GGGCTGCAGATTTTAATGGAGAATTAA 60.418 37.037 20.43 0.00 38.66 1.40
157 158 7.436376 GGCTGCAGATTTTAATGGAGAATTAAC 59.564 37.037 20.43 0.00 39.84 2.01
158 159 7.166473 GCTGCAGATTTTAATGGAGAATTAACG 59.834 37.037 20.43 0.00 39.84 3.18
159 160 8.275015 TGCAGATTTTAATGGAGAATTAACGA 57.725 30.769 0.00 0.00 39.84 3.85
160 161 8.735315 TGCAGATTTTAATGGAGAATTAACGAA 58.265 29.630 0.00 0.00 39.84 3.85
161 162 9.567848 GCAGATTTTAATGGAGAATTAACGAAA 57.432 29.630 0.00 0.00 39.84 3.46
170 171 7.773864 TGGAGAATTAACGAAAATATACGCA 57.226 32.000 0.00 0.00 0.00 5.24
171 172 8.199176 TGGAGAATTAACGAAAATATACGCAA 57.801 30.769 0.00 0.00 0.00 4.85
172 173 8.666573 TGGAGAATTAACGAAAATATACGCAAA 58.333 29.630 0.00 0.00 0.00 3.68
173 174 8.940924 GGAGAATTAACGAAAATATACGCAAAC 58.059 33.333 0.00 0.00 0.00 2.93
189 190 5.465857 CGCAAACGTATCTGAAACAAAAG 57.534 39.130 0.00 0.00 33.53 2.27
190 191 4.967575 CGCAAACGTATCTGAAACAAAAGT 59.032 37.500 0.00 0.00 33.53 2.66
191 192 5.454232 CGCAAACGTATCTGAAACAAAAGTT 59.546 36.000 0.00 0.00 33.53 2.66
192 193 6.557711 CGCAAACGTATCTGAAACAAAAGTTG 60.558 38.462 0.00 0.00 33.53 3.16
193 194 8.817193 CGCAAACGTATCTGAAACAAAAGTTGT 61.817 37.037 0.00 0.00 39.15 3.32
194 195 7.513041 GCAAACGTATCTGAAACAAAAGTTGTC 60.513 37.037 0.00 0.00 44.59 3.18
195 196 5.734311 ACGTATCTGAAACAAAAGTTGTCG 58.266 37.500 0.00 0.00 44.59 4.35
196 197 5.137403 CGTATCTGAAACAAAAGTTGTCGG 58.863 41.667 0.00 0.00 44.59 4.79
197 198 5.050634 CGTATCTGAAACAAAAGTTGTCGGA 60.051 40.000 0.00 0.00 44.59 4.55
198 199 4.609691 TCTGAAACAAAAGTTGTCGGAC 57.390 40.909 0.00 0.00 44.59 4.79
199 200 4.258543 TCTGAAACAAAAGTTGTCGGACT 58.741 39.130 9.88 0.00 44.59 3.85
200 201 4.698304 TCTGAAACAAAAGTTGTCGGACTT 59.302 37.500 9.88 0.00 44.59 3.01
201 202 4.728534 TGAAACAAAAGTTGTCGGACTTG 58.271 39.130 9.88 7.51 44.59 3.16
202 203 4.216687 TGAAACAAAAGTTGTCGGACTTGT 59.783 37.500 9.88 8.13 44.59 3.16
203 204 4.776795 AACAAAAGTTGTCGGACTTGTT 57.223 36.364 15.53 15.53 44.59 2.83
204 205 4.776795 ACAAAAGTTGTCGGACTTGTTT 57.223 36.364 9.88 3.43 40.56 2.83
205 206 5.883503 ACAAAAGTTGTCGGACTTGTTTA 57.116 34.783 9.88 0.00 40.56 2.01
206 207 6.445357 ACAAAAGTTGTCGGACTTGTTTAT 57.555 33.333 9.88 0.00 40.56 1.40
207 208 7.556733 ACAAAAGTTGTCGGACTTGTTTATA 57.443 32.000 9.88 0.00 40.56 0.98
208 209 8.161699 ACAAAAGTTGTCGGACTTGTTTATAT 57.838 30.769 9.88 0.00 40.56 0.86
209 210 8.626526 ACAAAAGTTGTCGGACTTGTTTATATT 58.373 29.630 9.88 0.00 40.56 1.28
213 214 9.444600 AAGTTGTCGGACTTGTTTATATTATGT 57.555 29.630 9.88 0.00 38.39 2.29
214 215 9.444600 AGTTGTCGGACTTGTTTATATTATGTT 57.555 29.630 9.88 0.00 0.00 2.71
248 249 8.454570 ATGTATGAATCAATACATTGAGTGCA 57.545 30.769 9.42 7.79 46.73 4.57
249 250 8.565416 ATGTATGAATCAATACATTGAGTGCAG 58.435 33.333 9.42 0.00 46.73 4.41
260 261 2.078849 TGAGTGCAGGTTCATGTACG 57.921 50.000 0.00 0.00 40.31 3.67
312 313 2.537401 CTTCGAATTACCTGGTCCGTC 58.463 52.381 0.63 0.00 0.00 4.79
313 314 1.548081 TCGAATTACCTGGTCCGTCA 58.452 50.000 0.63 0.00 0.00 4.35
345 350 1.889699 GCCCTATCCATCAGCCCAATG 60.890 57.143 0.00 0.00 0.00 2.82
353 358 4.671831 TCCATCAGCCCAATGAAAGTAAA 58.328 39.130 0.00 0.00 31.76 2.01
368 373 8.816640 ATGAAAGTAAACAACATTGCCTAAAG 57.183 30.769 0.00 0.00 0.00 1.85
370 375 7.918562 TGAAAGTAAACAACATTGCCTAAAGAC 59.081 33.333 0.00 0.00 0.00 3.01
436 445 1.226916 CTTTGCAAACAGGCGCACA 60.227 52.632 10.83 0.00 38.00 4.57
449 458 4.129737 GCACACTCCTCCGCGCTA 62.130 66.667 5.56 0.00 0.00 4.26
469 478 1.186200 GGTCAGCCCATTTTCCCTTC 58.814 55.000 0.00 0.00 0.00 3.46
470 479 1.186200 GTCAGCCCATTTTCCCTTCC 58.814 55.000 0.00 0.00 0.00 3.46
510 525 1.630148 AACTGCGCTCTTCGTATGTC 58.370 50.000 9.73 0.00 41.07 3.06
527 542 0.534203 GTCTCAAACCGGCAACCTCA 60.534 55.000 0.00 0.00 0.00 3.86
565 580 0.178843 ACTAACCACCCCACCATCCT 60.179 55.000 0.00 0.00 0.00 3.24
575 590 2.126882 CCCACCATCCTCACCTGATAA 58.873 52.381 0.00 0.00 0.00 1.75
599 614 4.142881 GCTCAATTACACCGTCTTCTTTCC 60.143 45.833 0.00 0.00 0.00 3.13
606 621 5.286267 ACACCGTCTTCTTTCCTTTCTTA 57.714 39.130 0.00 0.00 0.00 2.10
632 648 3.777106 TCTTGGAACAGTTCTGCTCAT 57.223 42.857 13.13 0.00 42.39 2.90
644 676 8.169977 ACAGTTCTGCTCATCTTTTTATGAAA 57.830 30.769 0.00 0.00 35.51 2.69
765 801 1.298859 ATCGAGCAAACCAGGCGAAC 61.299 55.000 0.00 0.00 34.46 3.95
774 810 2.507992 CAGGCGAACCAGAGCGAG 60.508 66.667 0.00 0.00 39.06 5.03
788 824 4.202101 CCAGAGCGAGTTCAGAATCTACAT 60.202 45.833 0.00 0.00 0.00 2.29
798 834 2.056906 GAATCTACATGGGCCGGCCT 62.057 60.000 42.70 27.02 36.10 5.19
852 888 3.808036 GCCTGAAGCGCCGAATAA 58.192 55.556 2.29 0.00 0.00 1.40
942 985 5.450137 GGCCTCAACATTCAGAAATCATCAG 60.450 44.000 0.00 0.00 0.00 2.90
983 1026 1.889170 GGAAGAAACAGGCAAGGAAGG 59.111 52.381 0.00 0.00 0.00 3.46
1141 1185 7.674471 ACTTAAACTTCATAAGGCTCTGAAC 57.326 36.000 8.03 0.00 35.20 3.18
1145 1189 3.840666 ACTTCATAAGGCTCTGAACTGGA 59.159 43.478 8.03 0.00 0.00 3.86
1263 1307 0.320421 ACGCGAAGGTGTACTGCAAT 60.320 50.000 15.93 0.00 34.49 3.56
1725 1777 2.157668 CCAGTATGTGTCAACGTTGAGC 59.842 50.000 30.38 24.26 37.98 4.26
1793 1845 4.513406 TTTTCCTAGACCACCACAAGTT 57.487 40.909 0.00 0.00 0.00 2.66
1794 1846 3.764237 TTCCTAGACCACCACAAGTTC 57.236 47.619 0.00 0.00 0.00 3.01
1797 1849 3.007940 TCCTAGACCACCACAAGTTCATG 59.992 47.826 0.00 0.00 0.00 3.07
1799 1851 3.576078 AGACCACCACAAGTTCATGAA 57.424 42.857 3.38 3.38 0.00 2.57
1800 1852 3.897239 AGACCACCACAAGTTCATGAAA 58.103 40.909 10.35 0.00 0.00 2.69
1801 1853 4.277476 AGACCACCACAAGTTCATGAAAA 58.723 39.130 10.35 0.00 0.00 2.29
1883 1944 8.816640 ATCATTCAATTTTATTATTCACGCCC 57.183 30.769 0.00 0.00 0.00 6.13
1887 1948 5.008217 TCAATTTTATTATTCACGCCCGAGG 59.992 40.000 0.00 0.00 0.00 4.63
1914 1975 3.799963 GGGCGAGTTTCGTTTTGAATTTT 59.200 39.130 0.17 0.00 42.81 1.82
1937 1998 5.015178 TTCATTCTGAAATTACCCTGGAGGT 59.985 40.000 0.00 0.00 42.34 3.85
1938 1999 6.468651 TTCATTCTGAAATTACCCTGGAGGTT 60.469 38.462 0.00 0.00 38.58 3.50
1939 2000 8.449686 TTCATTCTGAAATTACCCTGGAGGTTG 61.450 40.741 0.00 0.00 38.58 3.77
1948 2009 2.196595 CCCTGGAGGTTGGAATACTCA 58.803 52.381 0.00 0.00 32.98 3.41
1949 2010 2.780010 CCCTGGAGGTTGGAATACTCAT 59.220 50.000 0.00 0.00 32.98 2.90
1950 2011 3.181450 CCCTGGAGGTTGGAATACTCATC 60.181 52.174 0.00 0.00 32.98 2.92
1951 2012 3.713764 CCTGGAGGTTGGAATACTCATCT 59.286 47.826 0.00 0.00 32.98 2.90
1952 2013 4.202305 CCTGGAGGTTGGAATACTCATCTC 60.202 50.000 0.00 0.00 32.98 2.75
1953 2014 3.711704 TGGAGGTTGGAATACTCATCTCC 59.288 47.826 0.00 0.00 36.44 3.71
1954 2015 3.711704 GGAGGTTGGAATACTCATCTCCA 59.288 47.826 0.00 0.00 37.47 3.86
1955 2016 4.349342 GGAGGTTGGAATACTCATCTCCAT 59.651 45.833 0.00 0.00 38.99 3.41
1956 2017 5.163152 GGAGGTTGGAATACTCATCTCCATT 60.163 44.000 0.00 0.00 38.99 3.16
1957 2018 5.934781 AGGTTGGAATACTCATCTCCATTC 58.065 41.667 0.00 0.00 38.99 2.67
1958 2019 5.669447 AGGTTGGAATACTCATCTCCATTCT 59.331 40.000 0.00 0.00 38.99 2.40
1959 2020 5.994668 GGTTGGAATACTCATCTCCATTCTC 59.005 44.000 0.00 0.00 38.99 2.87
1960 2021 5.815233 TGGAATACTCATCTCCATTCTCC 57.185 43.478 0.00 0.00 34.26 3.71
1961 2022 5.218959 TGGAATACTCATCTCCATTCTCCA 58.781 41.667 0.00 0.00 34.26 3.86
1967 2028 5.558818 ACTCATCTCCATTCTCCAATATGC 58.441 41.667 0.00 0.00 0.00 3.14
2044 2106 8.321353 TCAAATTCCTTCTACTCTGCTTTGATA 58.679 33.333 0.00 0.00 0.00 2.15
2084 2146 3.448301 CCGTGGGATGTACTTAACAGGTA 59.552 47.826 0.00 0.00 42.70 3.08
2115 4606 9.127277 AGTCTAGACTTTAGATCACCTAATCAC 57.873 37.037 20.00 0.00 38.83 3.06
2226 4731 2.670635 GGTGTAGATGCTCACAGCG 58.329 57.895 0.00 0.00 46.26 5.18
2284 4789 1.109920 GGCATCGGAGCAGAGGTAGA 61.110 60.000 2.61 0.00 35.83 2.59
2350 4866 0.107654 GGAGGGCAAAGTAGACGCAT 60.108 55.000 0.00 0.00 0.00 4.73
2358 4874 3.303725 GCAAAGTAGACGCATGTGAACAA 60.304 43.478 14.43 0.00 0.00 2.83
2375 4891 0.667487 CAAGTCAGATCGTGCGTGGT 60.667 55.000 0.00 0.00 0.00 4.16
2376 4892 0.033504 AAGTCAGATCGTGCGTGGTT 59.966 50.000 0.00 0.00 0.00 3.67
2403 4919 1.420138 CCCCCTCTTTATATGTGGCGT 59.580 52.381 0.00 0.00 0.00 5.68
2427 4943 2.738964 GCGATCAGAGGACCTAAACCAC 60.739 54.545 0.00 0.00 0.00 4.16
2485 5001 0.393820 GTGTCAAGGGGGTACGAACA 59.606 55.000 0.00 0.00 0.00 3.18
2503 5019 2.417719 ACATTGCTTCGTGACCTTCTC 58.582 47.619 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.708949 CCACTACACTACCTTGTAATTTGTGT 59.291 38.462 0.00 0.00 39.86 3.72
1 2 6.348213 GCCACTACACTACCTTGTAATTTGTG 60.348 42.308 0.00 0.00 31.52 3.33
2 3 5.704053 GCCACTACACTACCTTGTAATTTGT 59.296 40.000 0.00 0.00 31.52 2.83
3 4 5.938125 AGCCACTACACTACCTTGTAATTTG 59.062 40.000 0.00 0.00 31.52 2.32
5 6 5.757099 AGCCACTACACTACCTTGTAATT 57.243 39.130 0.00 0.00 31.52 1.40
6 7 6.238953 CGATAGCCACTACACTACCTTGTAAT 60.239 42.308 0.00 0.00 31.52 1.89
7 8 5.066893 CGATAGCCACTACACTACCTTGTAA 59.933 44.000 0.00 0.00 31.52 2.41
8 9 4.577693 CGATAGCCACTACACTACCTTGTA 59.422 45.833 0.00 0.00 0.00 2.41
9 10 3.380637 CGATAGCCACTACACTACCTTGT 59.619 47.826 0.00 0.00 0.00 3.16
10 11 3.966154 CGATAGCCACTACACTACCTTG 58.034 50.000 0.00 0.00 0.00 3.61
32 33 4.799473 CGCCACGCACGCATCAAG 62.799 66.667 0.00 0.00 0.00 3.02
49 50 1.852067 AAATGTGAACGCAGTCCGCC 61.852 55.000 0.00 0.00 45.00 6.13
50 51 0.452784 GAAATGTGAACGCAGTCCGC 60.453 55.000 0.00 0.00 45.00 5.54
51 52 1.148310 AGAAATGTGAACGCAGTCCG 58.852 50.000 0.00 0.00 45.00 4.79
52 53 6.480320 AGAATATAGAAATGTGAACGCAGTCC 59.520 38.462 0.00 0.00 45.00 3.85
53 54 7.470289 AGAATATAGAAATGTGAACGCAGTC 57.530 36.000 0.00 0.00 45.00 3.51
79 80 9.231297 CCACTTGACAAGGATAGAAATAGAAAA 57.769 33.333 19.16 0.00 0.00 2.29
80 81 8.383175 ACCACTTGACAAGGATAGAAATAGAAA 58.617 33.333 19.16 0.00 0.00 2.52
81 82 7.918076 ACCACTTGACAAGGATAGAAATAGAA 58.082 34.615 19.16 0.00 0.00 2.10
82 83 7.496346 ACCACTTGACAAGGATAGAAATAGA 57.504 36.000 19.16 0.00 0.00 1.98
83 84 8.478877 AGTACCACTTGACAAGGATAGAAATAG 58.521 37.037 19.16 0.00 0.00 1.73
84 85 8.375493 AGTACCACTTGACAAGGATAGAAATA 57.625 34.615 19.16 0.00 0.00 1.40
85 86 7.038302 TGAGTACCACTTGACAAGGATAGAAAT 60.038 37.037 19.16 0.00 0.00 2.17
86 87 6.269077 TGAGTACCACTTGACAAGGATAGAAA 59.731 38.462 19.16 0.00 0.00 2.52
87 88 5.778241 TGAGTACCACTTGACAAGGATAGAA 59.222 40.000 19.16 0.00 0.00 2.10
88 89 5.185249 GTGAGTACCACTTGACAAGGATAGA 59.815 44.000 19.16 0.00 42.44 1.98
89 90 5.047306 TGTGAGTACCACTTGACAAGGATAG 60.047 44.000 19.16 7.21 45.86 2.08
90 91 4.836175 TGTGAGTACCACTTGACAAGGATA 59.164 41.667 19.16 5.81 45.86 2.59
91 92 3.646162 TGTGAGTACCACTTGACAAGGAT 59.354 43.478 19.16 6.73 45.86 3.24
92 93 3.035363 TGTGAGTACCACTTGACAAGGA 58.965 45.455 19.16 0.00 45.86 3.36
93 94 3.131396 GTGTGAGTACCACTTGACAAGG 58.869 50.000 19.16 6.06 45.86 3.61
94 95 3.792401 TGTGTGAGTACCACTTGACAAG 58.208 45.455 13.77 13.77 45.86 3.16
95 96 3.897141 TGTGTGAGTACCACTTGACAA 57.103 42.857 13.41 0.00 45.86 3.18
96 97 4.021456 CCTATGTGTGAGTACCACTTGACA 60.021 45.833 13.41 10.46 45.86 3.58
97 98 4.021368 ACCTATGTGTGAGTACCACTTGAC 60.021 45.833 13.41 6.37 45.86 3.18
98 99 4.157246 ACCTATGTGTGAGTACCACTTGA 58.843 43.478 13.41 1.63 45.86 3.02
99 100 4.537135 ACCTATGTGTGAGTACCACTTG 57.463 45.455 13.41 1.02 45.86 3.16
100 101 5.128827 CCATACCTATGTGTGAGTACCACTT 59.871 44.000 13.41 5.56 45.86 3.16
101 102 4.649674 CCATACCTATGTGTGAGTACCACT 59.350 45.833 13.41 0.00 45.86 4.00
102 103 4.202223 CCCATACCTATGTGTGAGTACCAC 60.202 50.000 7.34 7.34 45.88 4.16
103 104 3.964688 CCCATACCTATGTGTGAGTACCA 59.035 47.826 0.00 0.00 35.78 3.25
104 105 3.323979 CCCCATACCTATGTGTGAGTACC 59.676 52.174 0.00 0.00 35.78 3.34
105 106 3.244112 GCCCCATACCTATGTGTGAGTAC 60.244 52.174 0.00 0.00 35.78 2.73
106 107 2.969950 GCCCCATACCTATGTGTGAGTA 59.030 50.000 0.00 0.00 35.78 2.59
107 108 1.768870 GCCCCATACCTATGTGTGAGT 59.231 52.381 0.00 0.00 35.78 3.41
108 109 1.270305 CGCCCCATACCTATGTGTGAG 60.270 57.143 0.00 0.00 35.78 3.51
109 110 0.756294 CGCCCCATACCTATGTGTGA 59.244 55.000 0.00 0.00 35.78 3.58
110 111 0.468226 ACGCCCCATACCTATGTGTG 59.532 55.000 0.00 0.00 33.72 3.82
111 112 0.468226 CACGCCCCATACCTATGTGT 59.532 55.000 0.00 0.00 31.82 3.72
112 113 0.250295 CCACGCCCCATACCTATGTG 60.250 60.000 0.00 0.00 31.82 3.21
113 114 1.415672 CCCACGCCCCATACCTATGT 61.416 60.000 0.00 0.00 31.82 2.29
114 115 1.374947 CCCACGCCCCATACCTATG 59.625 63.158 0.00 0.00 0.00 2.23
115 116 2.526046 GCCCACGCCCCATACCTAT 61.526 63.158 0.00 0.00 0.00 2.57
116 117 3.165685 GCCCACGCCCCATACCTA 61.166 66.667 0.00 0.00 0.00 3.08
118 119 4.875713 CAGCCCACGCCCCATACC 62.876 72.222 0.00 0.00 34.57 2.73
125 126 1.312371 TAAAATCTGCAGCCCACGCC 61.312 55.000 9.47 0.00 34.57 5.68
126 127 0.525761 TTAAAATCTGCAGCCCACGC 59.474 50.000 9.47 0.00 0.00 5.34
127 128 2.480073 CCATTAAAATCTGCAGCCCACG 60.480 50.000 9.47 0.00 0.00 4.94
128 129 2.760092 TCCATTAAAATCTGCAGCCCAC 59.240 45.455 9.47 0.00 0.00 4.61
129 130 3.025978 CTCCATTAAAATCTGCAGCCCA 58.974 45.455 9.47 0.00 0.00 5.36
130 131 3.290710 TCTCCATTAAAATCTGCAGCCC 58.709 45.455 9.47 0.00 0.00 5.19
131 132 4.989279 TTCTCCATTAAAATCTGCAGCC 57.011 40.909 9.47 0.00 0.00 4.85
132 133 7.166473 CGTTAATTCTCCATTAAAATCTGCAGC 59.834 37.037 9.47 0.00 38.77 5.25
133 134 8.397906 TCGTTAATTCTCCATTAAAATCTGCAG 58.602 33.333 7.63 7.63 38.77 4.41
134 135 8.275015 TCGTTAATTCTCCATTAAAATCTGCA 57.725 30.769 0.00 0.00 38.77 4.41
135 136 9.567848 TTTCGTTAATTCTCCATTAAAATCTGC 57.432 29.630 0.00 0.00 38.77 4.26
144 145 8.832521 TGCGTATATTTTCGTTAATTCTCCATT 58.167 29.630 0.00 0.00 0.00 3.16
145 146 8.373048 TGCGTATATTTTCGTTAATTCTCCAT 57.627 30.769 0.00 0.00 0.00 3.41
146 147 7.773864 TGCGTATATTTTCGTTAATTCTCCA 57.226 32.000 0.00 0.00 0.00 3.86
147 148 8.940924 GTTTGCGTATATTTTCGTTAATTCTCC 58.059 33.333 0.00 0.00 0.00 3.71
148 149 8.658600 CGTTTGCGTATATTTTCGTTAATTCTC 58.341 33.333 0.00 0.00 0.00 2.87
149 150 8.524466 CGTTTGCGTATATTTTCGTTAATTCT 57.476 30.769 0.00 0.00 0.00 2.40
166 167 6.894675 AACTTTTGTTTCAGATACGTTTGCGT 60.895 34.615 0.00 0.00 46.64 5.24
167 168 4.967575 ACTTTTGTTTCAGATACGTTTGCG 59.032 37.500 0.00 0.00 44.93 4.85
168 169 6.252655 ACAACTTTTGTTTCAGATACGTTTGC 59.747 34.615 0.00 0.00 42.22 3.68
169 170 7.304622 CGACAACTTTTGTTTCAGATACGTTTG 60.305 37.037 0.00 0.00 45.52 2.93
170 171 6.685403 CGACAACTTTTGTTTCAGATACGTTT 59.315 34.615 0.00 0.00 45.52 3.60
171 172 6.189567 CGACAACTTTTGTTTCAGATACGTT 58.810 36.000 0.00 0.00 45.52 3.99
172 173 5.277154 CCGACAACTTTTGTTTCAGATACGT 60.277 40.000 0.00 0.00 45.52 3.57
173 174 5.050634 TCCGACAACTTTTGTTTCAGATACG 60.051 40.000 0.00 0.00 45.52 3.06
174 175 6.018180 AGTCCGACAACTTTTGTTTCAGATAC 60.018 38.462 0.40 0.00 45.52 2.24
175 176 6.053005 AGTCCGACAACTTTTGTTTCAGATA 58.947 36.000 0.40 0.00 45.52 1.98
176 177 4.881850 AGTCCGACAACTTTTGTTTCAGAT 59.118 37.500 0.40 0.00 45.52 2.90
177 178 4.258543 AGTCCGACAACTTTTGTTTCAGA 58.741 39.130 0.40 0.00 45.52 3.27
178 179 4.616181 AGTCCGACAACTTTTGTTTCAG 57.384 40.909 0.40 0.00 45.52 3.02
179 180 4.216687 ACAAGTCCGACAACTTTTGTTTCA 59.783 37.500 0.40 0.00 45.52 2.69
180 181 4.729595 ACAAGTCCGACAACTTTTGTTTC 58.270 39.130 0.40 0.00 45.52 2.78
181 182 4.776795 ACAAGTCCGACAACTTTTGTTT 57.223 36.364 0.40 0.00 45.52 2.83
182 183 4.776795 AACAAGTCCGACAACTTTTGTT 57.223 36.364 9.06 9.06 45.52 2.83
187 188 9.444600 ACATAATATAAACAAGTCCGACAACTT 57.555 29.630 0.40 0.00 40.08 2.66
188 189 9.444600 AACATAATATAAACAAGTCCGACAACT 57.555 29.630 0.40 0.00 0.00 3.16
222 223 9.558396 TGCACTCAATGTATTGATTCATACATA 57.442 29.630 15.74 6.75 44.92 2.29
223 224 8.454570 TGCACTCAATGTATTGATTCATACAT 57.545 30.769 7.67 12.25 44.92 2.29
224 225 7.012610 CCTGCACTCAATGTATTGATTCATACA 59.987 37.037 7.67 9.73 44.92 2.29
225 226 7.012704 ACCTGCACTCAATGTATTGATTCATAC 59.987 37.037 7.67 0.00 44.92 2.39
226 227 7.056006 ACCTGCACTCAATGTATTGATTCATA 58.944 34.615 7.67 0.00 44.92 2.15
227 228 5.889853 ACCTGCACTCAATGTATTGATTCAT 59.110 36.000 7.67 0.00 44.92 2.57
228 229 5.255687 ACCTGCACTCAATGTATTGATTCA 58.744 37.500 7.67 5.85 44.92 2.57
229 230 5.824904 ACCTGCACTCAATGTATTGATTC 57.175 39.130 7.67 2.12 44.92 2.52
230 231 5.711506 TGAACCTGCACTCAATGTATTGATT 59.288 36.000 7.67 0.20 44.92 2.57
231 232 5.255687 TGAACCTGCACTCAATGTATTGAT 58.744 37.500 7.67 0.00 44.92 2.57
232 233 4.650734 TGAACCTGCACTCAATGTATTGA 58.349 39.130 7.06 7.06 43.94 2.57
233 234 5.106038 ACATGAACCTGCACTCAATGTATTG 60.106 40.000 0.00 0.00 39.10 1.90
234 235 5.012239 ACATGAACCTGCACTCAATGTATT 58.988 37.500 0.00 0.00 0.00 1.89
235 236 4.592942 ACATGAACCTGCACTCAATGTAT 58.407 39.130 0.00 0.00 0.00 2.29
236 237 4.019792 ACATGAACCTGCACTCAATGTA 57.980 40.909 0.00 0.00 0.00 2.29
237 238 2.867624 ACATGAACCTGCACTCAATGT 58.132 42.857 0.00 0.00 0.00 2.71
238 239 3.181517 CGTACATGAACCTGCACTCAATG 60.182 47.826 0.00 0.00 0.00 2.82
239 240 3.002791 CGTACATGAACCTGCACTCAAT 58.997 45.455 0.00 0.00 0.00 2.57
240 241 2.036604 TCGTACATGAACCTGCACTCAA 59.963 45.455 0.00 0.00 0.00 3.02
241 242 1.616374 TCGTACATGAACCTGCACTCA 59.384 47.619 0.00 0.00 0.00 3.41
242 243 2.363788 TCGTACATGAACCTGCACTC 57.636 50.000 0.00 0.00 0.00 3.51
243 244 2.831685 TTCGTACATGAACCTGCACT 57.168 45.000 0.00 0.00 0.00 4.40
244 245 3.889196 TTTTCGTACATGAACCTGCAC 57.111 42.857 0.00 0.00 0.00 4.57
245 246 4.277174 ACATTTTTCGTACATGAACCTGCA 59.723 37.500 0.00 0.00 0.00 4.41
246 247 4.794169 ACATTTTTCGTACATGAACCTGC 58.206 39.130 0.00 0.00 0.00 4.85
247 248 8.964420 AAATACATTTTTCGTACATGAACCTG 57.036 30.769 0.00 0.00 0.00 4.00
281 282 5.739161 CAGGTAATTCGAAGCATGTTTAAGC 59.261 40.000 3.35 0.00 0.00 3.09
312 313 5.404466 TGGATAGGGCTTTGTCAATTTTG 57.596 39.130 0.00 0.00 0.00 2.44
313 314 5.721000 TGATGGATAGGGCTTTGTCAATTTT 59.279 36.000 0.00 0.00 0.00 1.82
345 350 7.918562 TGTCTTTAGGCAATGTTGTTTACTTTC 59.081 33.333 0.00 0.00 0.00 2.62
353 358 4.275936 GTCTGTGTCTTTAGGCAATGTTGT 59.724 41.667 0.00 0.00 0.00 3.32
368 373 5.163933 TGTCGTTTGTTGTTTAGTCTGTGTC 60.164 40.000 0.00 0.00 0.00 3.67
370 375 5.211266 TGTCGTTTGTTGTTTAGTCTGTG 57.789 39.130 0.00 0.00 0.00 3.66
436 445 2.829458 GACCTAGCGCGGAGGAGT 60.829 66.667 30.77 14.58 37.53 3.85
449 458 0.786435 AAGGGAAAATGGGCTGACCT 59.214 50.000 0.00 0.00 41.11 3.85
493 508 1.202188 TGAGACATACGAAGAGCGCAG 60.202 52.381 11.47 0.00 46.04 5.18
499 514 2.673043 GCCGGTTTGAGACATACGAAGA 60.673 50.000 1.90 0.00 0.00 2.87
504 519 1.467342 GGTTGCCGGTTTGAGACATAC 59.533 52.381 1.90 0.00 0.00 2.39
510 525 0.523072 CATGAGGTTGCCGGTTTGAG 59.477 55.000 1.90 0.00 0.00 3.02
527 542 3.960571 AGTGCAGCTAACAAAGGATCAT 58.039 40.909 0.00 0.00 0.00 2.45
565 580 5.428253 GGTGTAATTGAGCTTATCAGGTGA 58.572 41.667 0.00 0.00 39.68 4.02
575 590 3.963428 AGAAGACGGTGTAATTGAGCT 57.037 42.857 0.00 0.00 0.00 4.09
704 738 9.866936 ACGAAAACAATCATGAATTTGAATTTG 57.133 25.926 14.50 13.17 0.00 2.32
737 773 4.209288 CCTGGTTTGCTCGATCGTATTTAG 59.791 45.833 15.94 5.67 0.00 1.85
738 774 4.116961 CCTGGTTTGCTCGATCGTATTTA 58.883 43.478 15.94 0.00 0.00 1.40
765 801 2.957491 AGATTCTGAACTCGCTCTGG 57.043 50.000 0.00 0.00 0.00 3.86
774 810 2.213499 CGGCCCATGTAGATTCTGAAC 58.787 52.381 0.00 0.00 0.00 3.18
798 834 1.673993 CCACATGCCAACGCTGGTA 60.674 57.895 6.73 1.64 45.53 3.25
918 961 4.400251 TGATGATTTCTGAATGTTGAGGCC 59.600 41.667 0.00 0.00 0.00 5.19
942 985 4.039730 TCCTATCTTATCCTCTTGTGCTGC 59.960 45.833 0.00 0.00 0.00 5.25
983 1026 0.110056 CATGGCTGACGACTTGTTGC 60.110 55.000 0.00 0.00 0.00 4.17
1084 1127 2.056815 GTACCTGGGAGGGGACGAC 61.057 68.421 0.00 0.00 40.58 4.34
1141 1185 0.318441 TTCGCAACTGTCTCCTCCAG 59.682 55.000 0.00 0.00 36.01 3.86
1145 1189 1.270907 AGGATTCGCAACTGTCTCCT 58.729 50.000 0.00 0.00 0.00 3.69
1157 1201 0.247145 GCGCACACGTTAAGGATTCG 60.247 55.000 0.30 1.67 42.83 3.34
1185 1229 1.196766 AGCACCTCATCCTCTGCACA 61.197 55.000 0.00 0.00 31.71 4.57
1192 1236 1.445095 GCATCGAGCACCTCATCCT 59.555 57.895 0.00 0.00 44.79 3.24
1725 1777 5.801350 TTTAGAGCACCGATTTCATGAAG 57.199 39.130 8.41 0.00 0.00 3.02
1793 1845 4.859304 AGCTGTGAGCAAATTTTCATGA 57.141 36.364 0.00 0.00 45.56 3.07
1794 1846 5.946298 TCTAGCTGTGAGCAAATTTTCATG 58.054 37.500 0.00 0.00 45.56 3.07
1797 1849 7.483059 GTGTATTCTAGCTGTGAGCAAATTTTC 59.517 37.037 0.00 0.00 45.56 2.29
1799 1851 6.430925 TGTGTATTCTAGCTGTGAGCAAATTT 59.569 34.615 0.00 0.00 45.56 1.82
1800 1852 5.939883 TGTGTATTCTAGCTGTGAGCAAATT 59.060 36.000 0.00 0.00 45.56 1.82
1801 1853 5.491070 TGTGTATTCTAGCTGTGAGCAAAT 58.509 37.500 0.00 0.00 45.56 2.32
1858 1919 7.594758 CGGGCGTGAATAATAAAATTGAATGAT 59.405 33.333 0.00 0.00 0.00 2.45
1883 1944 1.784525 GAAACTCGCCCATATCCTCG 58.215 55.000 0.00 0.00 0.00 4.63
1887 1948 3.372822 TCAAAACGAAACTCGCCCATATC 59.627 43.478 0.00 0.00 45.12 1.63
1896 1957 9.019764 TCAGAATGAAAATTCAAAACGAAACTC 57.980 29.630 0.00 0.00 45.97 3.01
1937 1998 5.667172 TGGAGAATGGAGATGAGTATTCCAA 59.333 40.000 0.00 0.00 43.69 3.53
1938 1999 5.218959 TGGAGAATGGAGATGAGTATTCCA 58.781 41.667 0.00 0.00 44.52 3.53
1939 2000 5.815233 TGGAGAATGGAGATGAGTATTCC 57.185 43.478 0.00 0.00 31.56 3.01
1942 2003 7.037802 TGCATATTGGAGAATGGAGATGAGTAT 60.038 37.037 0.00 0.00 0.00 2.12
1943 2004 6.270695 TGCATATTGGAGAATGGAGATGAGTA 59.729 38.462 0.00 0.00 0.00 2.59
1944 2005 5.072736 TGCATATTGGAGAATGGAGATGAGT 59.927 40.000 0.00 0.00 0.00 3.41
1945 2006 5.557866 TGCATATTGGAGAATGGAGATGAG 58.442 41.667 0.00 0.00 0.00 2.90
1946 2007 5.571791 TGCATATTGGAGAATGGAGATGA 57.428 39.130 0.00 0.00 0.00 2.92
1947 2008 6.644248 TTTGCATATTGGAGAATGGAGATG 57.356 37.500 0.00 0.00 0.00 2.90
1948 2009 7.008332 TCATTTGCATATTGGAGAATGGAGAT 58.992 34.615 4.20 0.00 0.00 2.75
1949 2010 6.263842 GTCATTTGCATATTGGAGAATGGAGA 59.736 38.462 4.20 0.00 0.00 3.71
1950 2011 6.040054 TGTCATTTGCATATTGGAGAATGGAG 59.960 38.462 4.20 0.00 0.00 3.86
1951 2012 5.892686 TGTCATTTGCATATTGGAGAATGGA 59.107 36.000 4.20 0.00 0.00 3.41
1952 2013 5.981315 GTGTCATTTGCATATTGGAGAATGG 59.019 40.000 4.20 0.00 0.00 3.16
1953 2014 5.981315 GGTGTCATTTGCATATTGGAGAATG 59.019 40.000 0.00 0.00 0.00 2.67
1954 2015 5.657745 TGGTGTCATTTGCATATTGGAGAAT 59.342 36.000 0.00 0.00 0.00 2.40
1955 2016 5.015515 TGGTGTCATTTGCATATTGGAGAA 58.984 37.500 0.00 0.00 0.00 2.87
1956 2017 4.598022 TGGTGTCATTTGCATATTGGAGA 58.402 39.130 0.00 0.00 0.00 3.71
1957 2018 4.987408 TGGTGTCATTTGCATATTGGAG 57.013 40.909 0.00 0.00 0.00 3.86
1958 2019 4.954826 TCATGGTGTCATTTGCATATTGGA 59.045 37.500 0.00 0.00 0.00 3.53
1959 2020 5.265350 TCATGGTGTCATTTGCATATTGG 57.735 39.130 0.00 0.00 0.00 3.16
1960 2021 6.100668 TGTTCATGGTGTCATTTGCATATTG 58.899 36.000 0.00 0.00 0.00 1.90
1961 2022 6.283544 TGTTCATGGTGTCATTTGCATATT 57.716 33.333 0.00 0.00 0.00 1.28
2091 2153 7.991460 TCGTGATTAGGTGATCTAAAGTCTAGA 59.009 37.037 0.00 0.00 40.89 2.43
2115 4606 7.776933 TCTTATTCCATCTCTTTGTTCATCG 57.223 36.000 0.00 0.00 0.00 3.84
2284 4789 1.554583 GGGGAGCGGAAGACCTTCTT 61.555 60.000 9.35 0.00 39.87 2.52
2350 4866 2.135139 GCACGATCTGACTTGTTCACA 58.865 47.619 0.00 0.00 0.00 3.58
2358 4874 0.033504 AAACCACGCACGATCTGACT 59.966 50.000 0.00 0.00 0.00 3.41
2403 4919 1.860641 TTAGGTCCTCTGATCGCCAA 58.139 50.000 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.