Multiple sequence alignment - TraesCS3D01G224600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G224600 chr3D 100.000 3360 0 0 1 3360 305878772 305875413 0.000000e+00 6205
1 TraesCS3D01G224600 chr3A 96.803 1877 48 7 1492 3360 423968240 423966368 0.000000e+00 3123
2 TraesCS3D01G224600 chr3A 87.229 415 37 12 730 1138 423968938 423968534 3.060000e-125 459
3 TraesCS3D01G224600 chr3A 93.562 233 10 2 1184 1415 423968516 423968288 3.210000e-90 342
4 TraesCS3D01G224600 chr3A 86.716 271 21 5 460 716 423969272 423969003 1.530000e-73 287
5 TraesCS3D01G224600 chr3B 89.317 1919 102 43 726 2613 415923134 415924980 0.000000e+00 2313
6 TraesCS3D01G224600 chr3B 97.099 724 20 1 2637 3360 415924971 415925693 0.000000e+00 1219
7 TraesCS3D01G224600 chr3B 85.085 295 23 5 451 724 415922799 415923093 7.100000e-72 281


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G224600 chr3D 305875413 305878772 3359 True 6205.00 6205 100.000000 1 3360 1 chr3D.!!$R1 3359
1 TraesCS3D01G224600 chr3A 423966368 423969272 2904 True 1052.75 3123 91.077500 460 3360 4 chr3A.!!$R1 2900
2 TraesCS3D01G224600 chr3B 415922799 415925693 2894 False 1271.00 2313 90.500333 451 3360 3 chr3B.!!$F1 2909

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
122 123 0.030909 TAGGGACCCGGATTAGGCAA 60.031 55.0 0.73 0.0 0.0 4.52 F
1161 1281 0.038310 TCTCTCACTTCCTCTCGCCA 59.962 55.0 0.00 0.0 0.0 5.69 F
1428 1552 0.109532 TGCGGGTCCACTGAATGAAA 59.890 50.0 0.00 0.0 0.0 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1758 1916 0.041312 CTGCAAAACCCGACTCGTTG 60.041 55.000 0.00 0.00 0.00 4.10 R
2125 2283 0.597637 CGACACCTGCGAACTTCTGT 60.598 55.000 0.00 0.00 0.00 3.41 R
2853 3019 1.329906 CAATTCTGCAGAGCGCTAAGG 59.670 52.381 17.43 3.57 43.06 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.164230 TGTGTTTGGTGTTTGAAAATAGAGT 57.836 32.000 0.00 0.00 0.00 3.24
26 27 7.607250 TGTGTTTGGTGTTTGAAAATAGAGTT 58.393 30.769 0.00 0.00 0.00 3.01
27 28 8.091449 TGTGTTTGGTGTTTGAAAATAGAGTTT 58.909 29.630 0.00 0.00 0.00 2.66
28 29 8.379902 GTGTTTGGTGTTTGAAAATAGAGTTTG 58.620 33.333 0.00 0.00 0.00 2.93
29 30 8.091449 TGTTTGGTGTTTGAAAATAGAGTTTGT 58.909 29.630 0.00 0.00 0.00 2.83
30 31 8.379902 GTTTGGTGTTTGAAAATAGAGTTTGTG 58.620 33.333 0.00 0.00 0.00 3.33
31 32 6.568869 TGGTGTTTGAAAATAGAGTTTGTGG 58.431 36.000 0.00 0.00 0.00 4.17
32 33 6.153680 TGGTGTTTGAAAATAGAGTTTGTGGT 59.846 34.615 0.00 0.00 0.00 4.16
33 34 7.039270 GGTGTTTGAAAATAGAGTTTGTGGTT 58.961 34.615 0.00 0.00 0.00 3.67
34 35 7.010091 GGTGTTTGAAAATAGAGTTTGTGGTTG 59.990 37.037 0.00 0.00 0.00 3.77
35 36 7.544217 GTGTTTGAAAATAGAGTTTGTGGTTGT 59.456 33.333 0.00 0.00 0.00 3.32
36 37 8.740906 TGTTTGAAAATAGAGTTTGTGGTTGTA 58.259 29.630 0.00 0.00 0.00 2.41
37 38 9.575783 GTTTGAAAATAGAGTTTGTGGTTGTAA 57.424 29.630 0.00 0.00 0.00 2.41
40 41 9.743057 TGAAAATAGAGTTTGTGGTTGTAAATG 57.257 29.630 0.00 0.00 0.00 2.32
41 42 9.191995 GAAAATAGAGTTTGTGGTTGTAAATGG 57.808 33.333 0.00 0.00 0.00 3.16
42 43 4.584327 AGAGTTTGTGGTTGTAAATGGC 57.416 40.909 0.00 0.00 0.00 4.40
43 44 3.957497 AGAGTTTGTGGTTGTAAATGGCA 59.043 39.130 0.00 0.00 0.00 4.92
44 45 4.404073 AGAGTTTGTGGTTGTAAATGGCAA 59.596 37.500 0.00 0.00 0.00 4.52
45 46 5.070313 AGAGTTTGTGGTTGTAAATGGCAAT 59.930 36.000 0.00 0.00 0.00 3.56
46 47 5.055812 AGTTTGTGGTTGTAAATGGCAATG 58.944 37.500 0.00 0.00 0.00 2.82
47 48 4.679373 TTGTGGTTGTAAATGGCAATGT 57.321 36.364 0.00 0.00 0.00 2.71
48 49 4.679373 TGTGGTTGTAAATGGCAATGTT 57.321 36.364 0.00 0.00 0.00 2.71
49 50 5.028549 TGTGGTTGTAAATGGCAATGTTT 57.971 34.783 0.00 0.00 0.00 2.83
50 51 4.813161 TGTGGTTGTAAATGGCAATGTTTG 59.187 37.500 0.00 0.00 0.00 2.93
51 52 5.053145 GTGGTTGTAAATGGCAATGTTTGA 58.947 37.500 0.00 0.00 0.00 2.69
52 53 5.177327 GTGGTTGTAAATGGCAATGTTTGAG 59.823 40.000 0.00 0.00 0.00 3.02
53 54 4.690280 GGTTGTAAATGGCAATGTTTGAGG 59.310 41.667 0.00 0.00 0.00 3.86
54 55 3.924144 TGTAAATGGCAATGTTTGAGGC 58.076 40.909 0.00 0.00 0.00 4.70
55 56 2.477845 AAATGGCAATGTTTGAGGCC 57.522 45.000 0.00 0.00 46.58 5.19
56 57 1.648116 AATGGCAATGTTTGAGGCCT 58.352 45.000 3.86 3.86 46.53 5.19
57 58 0.899720 ATGGCAATGTTTGAGGCCTG 59.100 50.000 12.00 0.00 46.53 4.85
58 59 1.079612 GGCAATGTTTGAGGCCTGC 60.080 57.895 12.00 5.13 43.09 4.85
59 60 1.079612 GCAATGTTTGAGGCCTGCC 60.080 57.895 12.00 0.00 0.00 4.85
60 61 1.593265 CAATGTTTGAGGCCTGCCC 59.407 57.895 12.00 0.00 36.58 5.36
61 62 1.155859 AATGTTTGAGGCCTGCCCA 59.844 52.632 12.00 0.00 36.58 5.36
62 63 0.901580 AATGTTTGAGGCCTGCCCAG 60.902 55.000 12.00 0.00 36.58 4.45
63 64 3.376918 GTTTGAGGCCTGCCCAGC 61.377 66.667 12.00 0.00 36.58 4.85
70 71 3.455469 GCCTGCCCAGCCATTGTC 61.455 66.667 0.00 0.00 0.00 3.18
71 72 2.757099 CCTGCCCAGCCATTGTCC 60.757 66.667 0.00 0.00 0.00 4.02
72 73 3.136123 CTGCCCAGCCATTGTCCG 61.136 66.667 0.00 0.00 0.00 4.79
107 108 2.181021 GTCCGCAGACGTGTAGGG 59.819 66.667 0.00 0.00 37.70 3.53
108 109 2.034532 TCCGCAGACGTGTAGGGA 59.965 61.111 0.00 0.00 37.70 4.20
109 110 2.181021 CCGCAGACGTGTAGGGAC 59.819 66.667 0.00 0.00 37.70 4.46
110 111 2.181021 CGCAGACGTGTAGGGACC 59.819 66.667 0.00 0.00 33.53 4.46
111 112 2.577593 GCAGACGTGTAGGGACCC 59.422 66.667 0.59 0.59 0.00 4.46
112 113 2.882876 CAGACGTGTAGGGACCCG 59.117 66.667 4.40 0.00 32.14 5.28
113 114 2.362120 AGACGTGTAGGGACCCGG 60.362 66.667 4.40 0.00 29.81 5.73
114 115 2.361610 GACGTGTAGGGACCCGGA 60.362 66.667 0.73 0.00 29.81 5.14
115 116 1.755783 GACGTGTAGGGACCCGGAT 60.756 63.158 0.73 0.00 29.81 4.18
116 117 1.305549 ACGTGTAGGGACCCGGATT 60.306 57.895 0.73 0.00 29.81 3.01
117 118 0.033208 ACGTGTAGGGACCCGGATTA 60.033 55.000 0.73 0.00 29.81 1.75
118 119 0.672342 CGTGTAGGGACCCGGATTAG 59.328 60.000 0.73 0.00 0.00 1.73
119 120 1.046204 GTGTAGGGACCCGGATTAGG 58.954 60.000 0.73 0.00 0.00 2.69
120 121 0.761702 TGTAGGGACCCGGATTAGGC 60.762 60.000 0.73 0.00 0.00 3.93
121 122 0.761702 GTAGGGACCCGGATTAGGCA 60.762 60.000 0.73 0.00 0.00 4.75
122 123 0.030909 TAGGGACCCGGATTAGGCAA 60.031 55.000 0.73 0.00 0.00 4.52
123 124 0.697854 AGGGACCCGGATTAGGCAAT 60.698 55.000 0.73 0.00 0.00 3.56
124 125 0.185175 GGGACCCGGATTAGGCAATT 59.815 55.000 0.73 0.00 0.00 2.32
125 126 1.411074 GGGACCCGGATTAGGCAATTT 60.411 52.381 0.73 0.00 0.00 1.82
126 127 1.954382 GGACCCGGATTAGGCAATTTC 59.046 52.381 0.73 0.00 0.00 2.17
127 128 1.602377 GACCCGGATTAGGCAATTTCG 59.398 52.381 0.73 0.00 0.00 3.46
128 129 1.210967 ACCCGGATTAGGCAATTTCGA 59.789 47.619 0.73 0.00 0.00 3.71
129 130 2.158667 ACCCGGATTAGGCAATTTCGAT 60.159 45.455 0.73 0.00 0.00 3.59
130 131 2.884639 CCCGGATTAGGCAATTTCGATT 59.115 45.455 0.73 0.00 0.00 3.34
131 132 3.304659 CCCGGATTAGGCAATTTCGATTG 60.305 47.826 0.73 0.00 34.79 2.67
132 133 3.315191 CCGGATTAGGCAATTTCGATTGT 59.685 43.478 0.00 0.00 34.21 2.71
133 134 4.513692 CCGGATTAGGCAATTTCGATTGTA 59.486 41.667 0.00 0.00 34.21 2.41
134 135 5.334105 CCGGATTAGGCAATTTCGATTGTAG 60.334 44.000 0.00 0.00 34.21 2.74
135 136 5.465390 CGGATTAGGCAATTTCGATTGTAGA 59.535 40.000 1.06 0.00 34.21 2.59
136 137 6.147821 CGGATTAGGCAATTTCGATTGTAGAT 59.852 38.462 1.06 0.00 34.21 1.98
137 138 7.301054 GGATTAGGCAATTTCGATTGTAGATG 58.699 38.462 1.06 0.00 34.21 2.90
138 139 4.558538 AGGCAATTTCGATTGTAGATGC 57.441 40.909 1.06 0.00 34.21 3.91
139 140 4.202441 AGGCAATTTCGATTGTAGATGCT 58.798 39.130 1.06 0.00 34.21 3.79
140 141 4.274459 AGGCAATTTCGATTGTAGATGCTC 59.726 41.667 1.06 0.00 34.21 4.26
141 142 4.274459 GGCAATTTCGATTGTAGATGCTCT 59.726 41.667 1.06 0.00 34.21 4.09
142 143 5.466728 GGCAATTTCGATTGTAGATGCTCTA 59.533 40.000 1.06 0.00 34.21 2.43
143 144 6.017934 GGCAATTTCGATTGTAGATGCTCTAA 60.018 38.462 1.06 0.00 34.21 2.10
144 145 7.308229 GGCAATTTCGATTGTAGATGCTCTAAT 60.308 37.037 1.06 0.00 34.21 1.73
145 146 7.533222 GCAATTTCGATTGTAGATGCTCTAATG 59.467 37.037 1.06 0.00 34.21 1.90
146 147 6.530913 TTTCGATTGTAGATGCTCTAATGC 57.469 37.500 0.00 0.00 29.58 3.56
147 148 4.560128 TCGATTGTAGATGCTCTAATGCC 58.440 43.478 0.00 0.00 29.58 4.40
148 149 4.281941 TCGATTGTAGATGCTCTAATGCCT 59.718 41.667 0.00 0.00 29.58 4.75
149 150 4.993584 CGATTGTAGATGCTCTAATGCCTT 59.006 41.667 0.00 0.00 29.58 4.35
150 151 5.119898 CGATTGTAGATGCTCTAATGCCTTC 59.880 44.000 0.00 0.00 29.58 3.46
151 152 5.620738 TTGTAGATGCTCTAATGCCTTCT 57.379 39.130 0.00 0.00 29.58 2.85
152 153 6.731292 TTGTAGATGCTCTAATGCCTTCTA 57.269 37.500 0.00 0.00 29.58 2.10
153 154 6.924913 TGTAGATGCTCTAATGCCTTCTAT 57.075 37.500 0.00 0.00 32.91 1.98
154 155 6.695429 TGTAGATGCTCTAATGCCTTCTATG 58.305 40.000 0.00 0.00 32.91 2.23
155 156 5.163281 AGATGCTCTAATGCCTTCTATGG 57.837 43.478 0.00 0.00 0.00 2.74
156 157 4.596643 AGATGCTCTAATGCCTTCTATGGT 59.403 41.667 0.00 0.00 0.00 3.55
157 158 4.778213 TGCTCTAATGCCTTCTATGGTT 57.222 40.909 0.00 0.00 0.00 3.67
158 159 4.708177 TGCTCTAATGCCTTCTATGGTTC 58.292 43.478 0.00 0.00 0.00 3.62
159 160 4.164030 TGCTCTAATGCCTTCTATGGTTCA 59.836 41.667 0.00 0.00 0.00 3.18
160 161 5.163163 TGCTCTAATGCCTTCTATGGTTCAT 60.163 40.000 0.00 0.00 0.00 2.57
161 162 6.043127 TGCTCTAATGCCTTCTATGGTTCATA 59.957 38.462 0.00 0.00 0.00 2.15
162 163 6.593382 GCTCTAATGCCTTCTATGGTTCATAG 59.407 42.308 8.24 8.24 43.52 2.23
163 164 7.009179 TCTAATGCCTTCTATGGTTCATAGG 57.991 40.000 13.09 3.70 42.71 2.57
164 165 5.912149 AATGCCTTCTATGGTTCATAGGA 57.088 39.130 13.09 5.63 42.71 2.94
165 166 6.460103 AATGCCTTCTATGGTTCATAGGAT 57.540 37.500 13.09 0.00 42.71 3.24
166 167 7.574021 AATGCCTTCTATGGTTCATAGGATA 57.426 36.000 13.09 1.99 42.71 2.59
167 168 7.761981 ATGCCTTCTATGGTTCATAGGATAT 57.238 36.000 13.09 0.77 42.71 1.63
168 169 8.860517 ATGCCTTCTATGGTTCATAGGATATA 57.139 34.615 13.09 1.76 42.71 0.86
169 170 8.311395 TGCCTTCTATGGTTCATAGGATATAG 57.689 38.462 13.09 0.00 42.71 1.31
170 171 7.345653 TGCCTTCTATGGTTCATAGGATATAGG 59.654 40.741 13.09 12.25 42.71 2.57
171 172 7.202047 GCCTTCTATGGTTCATAGGATATAGGG 60.202 44.444 13.09 6.34 42.71 3.53
172 173 8.068110 CCTTCTATGGTTCATAGGATATAGGGA 58.932 40.741 13.09 0.00 42.71 4.20
173 174 9.667607 CTTCTATGGTTCATAGGATATAGGGAT 57.332 37.037 13.09 0.00 42.71 3.85
178 179 8.783660 TGGTTCATAGGATATAGGGATATCAC 57.216 38.462 4.83 0.00 44.06 3.06
179 180 8.351414 TGGTTCATAGGATATAGGGATATCACA 58.649 37.037 7.92 0.00 44.06 3.58
180 181 8.865090 GGTTCATAGGATATAGGGATATCACAG 58.135 40.741 7.92 0.00 44.06 3.66
181 182 8.865090 GTTCATAGGATATAGGGATATCACAGG 58.135 40.741 7.92 0.00 44.06 4.00
182 183 8.363377 TCATAGGATATAGGGATATCACAGGA 57.637 38.462 7.92 0.00 44.06 3.86
183 184 8.801645 TCATAGGATATAGGGATATCACAGGAA 58.198 37.037 7.92 0.00 44.06 3.36
184 185 9.612879 CATAGGATATAGGGATATCACAGGAAT 57.387 37.037 7.92 0.00 44.06 3.01
187 188 8.238060 AGGATATAGGGATATCACAGGAATAGG 58.762 40.741 7.92 0.00 44.06 2.57
188 189 7.456269 GGATATAGGGATATCACAGGAATAGGG 59.544 44.444 7.92 0.00 44.06 3.53
189 190 4.785173 AGGGATATCACAGGAATAGGGA 57.215 45.455 7.92 0.00 0.00 4.20
190 191 5.106631 AGGGATATCACAGGAATAGGGAA 57.893 43.478 7.92 0.00 0.00 3.97
191 192 5.486332 AGGGATATCACAGGAATAGGGAAA 58.514 41.667 7.92 0.00 0.00 3.13
192 193 6.101223 AGGGATATCACAGGAATAGGGAAAT 58.899 40.000 7.92 0.00 0.00 2.17
193 194 6.216456 AGGGATATCACAGGAATAGGGAAATC 59.784 42.308 7.92 0.00 0.00 2.17
194 195 6.012508 GGGATATCACAGGAATAGGGAAATCA 60.013 42.308 4.83 0.00 0.00 2.57
195 196 7.312183 GGGATATCACAGGAATAGGGAAATCAT 60.312 40.741 4.83 0.00 0.00 2.45
196 197 8.772250 GGATATCACAGGAATAGGGAAATCATA 58.228 37.037 4.83 0.00 0.00 2.15
199 200 7.690454 TCACAGGAATAGGGAAATCATAAGA 57.310 36.000 0.00 0.00 0.00 2.10
200 201 8.101309 TCACAGGAATAGGGAAATCATAAGAA 57.899 34.615 0.00 0.00 0.00 2.52
201 202 8.556589 TCACAGGAATAGGGAAATCATAAGAAA 58.443 33.333 0.00 0.00 0.00 2.52
202 203 9.359653 CACAGGAATAGGGAAATCATAAGAAAT 57.640 33.333 0.00 0.00 0.00 2.17
203 204 9.359653 ACAGGAATAGGGAAATCATAAGAAATG 57.640 33.333 0.00 0.00 0.00 2.32
204 205 8.302438 CAGGAATAGGGAAATCATAAGAAATGC 58.698 37.037 0.00 0.00 0.00 3.56
205 206 7.175641 AGGAATAGGGAAATCATAAGAAATGCG 59.824 37.037 0.00 0.00 0.00 4.73
206 207 7.174946 GGAATAGGGAAATCATAAGAAATGCGA 59.825 37.037 0.00 0.00 0.00 5.10
207 208 8.641498 AATAGGGAAATCATAAGAAATGCGAT 57.359 30.769 0.00 0.00 0.00 4.58
208 209 6.323203 AGGGAAATCATAAGAAATGCGATG 57.677 37.500 0.00 0.00 0.00 3.84
209 210 6.064060 AGGGAAATCATAAGAAATGCGATGA 58.936 36.000 0.00 0.00 33.09 2.92
210 211 6.016777 AGGGAAATCATAAGAAATGCGATGAC 60.017 38.462 0.00 0.00 31.41 3.06
211 212 5.848036 GGAAATCATAAGAAATGCGATGACG 59.152 40.000 0.00 0.00 42.93 4.35
212 213 5.991328 AATCATAAGAAATGCGATGACGT 57.009 34.783 0.00 0.00 41.98 4.34
213 214 4.777140 TCATAAGAAATGCGATGACGTG 57.223 40.909 0.00 0.00 41.98 4.49
214 215 4.180817 TCATAAGAAATGCGATGACGTGT 58.819 39.130 0.00 0.00 41.98 4.49
215 216 5.344884 TCATAAGAAATGCGATGACGTGTA 58.655 37.500 0.00 0.00 41.98 2.90
216 217 5.983118 TCATAAGAAATGCGATGACGTGTAT 59.017 36.000 0.00 0.00 41.98 2.29
217 218 4.778842 AAGAAATGCGATGACGTGTATC 57.221 40.909 0.00 0.00 41.98 2.24
218 219 4.046938 AGAAATGCGATGACGTGTATCT 57.953 40.909 0.00 0.00 41.98 1.98
219 220 4.045104 AGAAATGCGATGACGTGTATCTC 58.955 43.478 0.00 0.00 41.98 2.75
220 221 3.436700 AATGCGATGACGTGTATCTCA 57.563 42.857 0.00 0.00 41.98 3.27
221 222 2.931512 TGCGATGACGTGTATCTCAA 57.068 45.000 0.00 0.00 41.98 3.02
222 223 3.436700 TGCGATGACGTGTATCTCAAT 57.563 42.857 0.00 0.00 41.98 2.57
223 224 3.780902 TGCGATGACGTGTATCTCAATT 58.219 40.909 0.00 0.00 41.98 2.32
224 225 4.180817 TGCGATGACGTGTATCTCAATTT 58.819 39.130 0.00 0.00 41.98 1.82
225 226 4.267690 TGCGATGACGTGTATCTCAATTTC 59.732 41.667 0.00 0.00 41.98 2.17
226 227 4.504461 GCGATGACGTGTATCTCAATTTCT 59.496 41.667 0.00 0.00 41.98 2.52
227 228 5.685954 GCGATGACGTGTATCTCAATTTCTA 59.314 40.000 0.00 0.00 41.98 2.10
228 229 6.363626 GCGATGACGTGTATCTCAATTTCTAT 59.636 38.462 0.00 0.00 41.98 1.98
229 230 7.537649 GCGATGACGTGTATCTCAATTTCTATA 59.462 37.037 0.00 0.00 41.98 1.31
230 231 9.056306 CGATGACGTGTATCTCAATTTCTATAG 57.944 37.037 0.00 0.00 34.56 1.31
231 232 9.347934 GATGACGTGTATCTCAATTTCTATAGG 57.652 37.037 0.00 0.00 0.00 2.57
232 233 8.459911 TGACGTGTATCTCAATTTCTATAGGA 57.540 34.615 0.00 0.00 0.00 2.94
233 234 8.909923 TGACGTGTATCTCAATTTCTATAGGAA 58.090 33.333 0.00 0.00 0.00 3.36
234 235 9.745880 GACGTGTATCTCAATTTCTATAGGAAA 57.254 33.333 0.00 0.00 46.33 3.13
328 329 8.991026 TGAAATGTGAATGATTGATTTTTGTCC 58.009 29.630 0.00 0.00 0.00 4.02
329 330 9.211485 GAAATGTGAATGATTGATTTTTGTCCT 57.789 29.630 0.00 0.00 0.00 3.85
331 332 9.643693 AATGTGAATGATTGATTTTTGTCCTAC 57.356 29.630 0.00 0.00 0.00 3.18
332 333 8.175925 TGTGAATGATTGATTTTTGTCCTACA 57.824 30.769 0.00 0.00 0.00 2.74
333 334 8.805175 TGTGAATGATTGATTTTTGTCCTACAT 58.195 29.630 0.00 0.00 0.00 2.29
337 338 9.754382 AATGATTGATTTTTGTCCTACATATGC 57.246 29.630 1.58 0.00 0.00 3.14
338 339 8.291191 TGATTGATTTTTGTCCTACATATGCA 57.709 30.769 1.58 0.00 0.00 3.96
339 340 8.916062 TGATTGATTTTTGTCCTACATATGCAT 58.084 29.630 3.79 3.79 0.00 3.96
342 343 8.394971 TGATTTTTGTCCTACATATGCATAGG 57.605 34.615 16.48 16.48 39.58 2.57
343 344 8.217111 TGATTTTTGTCCTACATATGCATAGGA 58.783 33.333 24.17 17.53 43.86 2.94
344 345 8.995027 ATTTTTGTCCTACATATGCATAGGAA 57.005 30.769 24.17 6.25 46.74 3.36
345 346 8.995027 TTTTTGTCCTACATATGCATAGGAAT 57.005 30.769 24.17 6.08 46.74 3.01
346 347 8.621532 TTTTGTCCTACATATGCATAGGAATC 57.378 34.615 24.17 10.39 46.74 2.52
347 348 6.933514 TGTCCTACATATGCATAGGAATCA 57.066 37.500 24.17 12.64 46.74 2.57
348 349 7.315066 TGTCCTACATATGCATAGGAATCAA 57.685 36.000 24.17 5.47 46.74 2.57
349 350 7.921304 TGTCCTACATATGCATAGGAATCAAT 58.079 34.615 24.17 3.92 46.74 2.57
350 351 8.385491 TGTCCTACATATGCATAGGAATCAATT 58.615 33.333 24.17 3.21 46.74 2.32
351 352 9.236006 GTCCTACATATGCATAGGAATCAATTT 57.764 33.333 24.17 2.49 46.74 1.82
352 353 9.453572 TCCTACATATGCATAGGAATCAATTTC 57.546 33.333 24.17 0.00 43.26 2.17
366 367 7.454260 GAATCAATTTCCTACAGACCAAAGT 57.546 36.000 0.00 0.00 0.00 2.66
367 368 6.824305 ATCAATTTCCTACAGACCAAAGTG 57.176 37.500 0.00 0.00 0.00 3.16
368 369 5.690865 TCAATTTCCTACAGACCAAAGTGT 58.309 37.500 0.00 0.00 0.00 3.55
369 370 6.126409 TCAATTTCCTACAGACCAAAGTGTT 58.874 36.000 0.00 0.00 0.00 3.32
370 371 6.605594 TCAATTTCCTACAGACCAAAGTGTTT 59.394 34.615 0.00 0.00 0.00 2.83
371 372 6.635030 ATTTCCTACAGACCAAAGTGTTTC 57.365 37.500 0.00 0.00 0.00 2.78
372 373 4.764050 TCCTACAGACCAAAGTGTTTCA 57.236 40.909 0.00 0.00 0.00 2.69
373 374 5.105567 TCCTACAGACCAAAGTGTTTCAA 57.894 39.130 0.00 0.00 0.00 2.69
374 375 5.502079 TCCTACAGACCAAAGTGTTTCAAA 58.498 37.500 0.00 0.00 0.00 2.69
375 376 5.588648 TCCTACAGACCAAAGTGTTTCAAAG 59.411 40.000 0.00 0.00 0.00 2.77
376 377 5.588648 CCTACAGACCAAAGTGTTTCAAAGA 59.411 40.000 0.00 0.00 0.00 2.52
377 378 5.975693 ACAGACCAAAGTGTTTCAAAGAA 57.024 34.783 0.00 0.00 0.00 2.52
378 379 6.339587 ACAGACCAAAGTGTTTCAAAGAAA 57.660 33.333 0.00 0.00 0.00 2.52
379 380 6.935167 ACAGACCAAAGTGTTTCAAAGAAAT 58.065 32.000 0.00 0.00 0.00 2.17
380 381 7.386059 ACAGACCAAAGTGTTTCAAAGAAATT 58.614 30.769 0.00 0.00 0.00 1.82
381 382 7.877612 ACAGACCAAAGTGTTTCAAAGAAATTT 59.122 29.630 0.00 0.00 0.00 1.82
382 383 8.720562 CAGACCAAAGTGTTTCAAAGAAATTTT 58.279 29.630 0.00 0.00 0.00 1.82
383 384 8.935844 AGACCAAAGTGTTTCAAAGAAATTTTC 58.064 29.630 0.66 0.66 0.00 2.29
384 385 8.039603 ACCAAAGTGTTTCAAAGAAATTTTCC 57.960 30.769 5.52 0.00 0.00 3.13
385 386 7.882791 ACCAAAGTGTTTCAAAGAAATTTTCCT 59.117 29.630 5.52 0.00 0.00 3.36
386 387 9.377312 CCAAAGTGTTTCAAAGAAATTTTCCTA 57.623 29.630 5.52 0.00 0.00 2.94
388 389 9.599866 AAAGTGTTTCAAAGAAATTTTCCTAGG 57.400 29.630 0.82 0.82 0.00 3.02
389 390 8.533569 AGTGTTTCAAAGAAATTTTCCTAGGA 57.466 30.769 7.62 7.62 0.00 2.94
390 391 8.977412 AGTGTTTCAAAGAAATTTTCCTAGGAA 58.023 29.630 20.72 20.72 0.00 3.36
391 392 9.594478 GTGTTTCAAAGAAATTTTCCTAGGAAA 57.406 29.630 29.41 29.41 41.69 3.13
406 407 9.686683 TTTCCTAGGAAAATTTCTATCCTTCAG 57.313 33.333 30.63 7.45 40.70 3.02
407 408 8.624019 TCCTAGGAAAATTTCTATCCTTCAGA 57.376 34.615 9.71 7.19 40.70 3.27
408 409 9.057911 TCCTAGGAAAATTTCTATCCTTCAGAA 57.942 33.333 9.71 0.00 40.70 3.02
409 410 9.859152 CCTAGGAAAATTTCTATCCTTCAGAAT 57.141 33.333 13.78 0.00 40.70 2.40
424 425 8.940397 TCCTTCAGAATTTCTACAAAATTCCT 57.060 30.769 15.85 5.16 43.88 3.36
425 426 8.796475 TCCTTCAGAATTTCTACAAAATTCCTG 58.204 33.333 15.85 13.61 43.88 3.86
426 427 8.579863 CCTTCAGAATTTCTACAAAATTCCTGT 58.420 33.333 15.85 0.00 43.88 4.00
436 437 7.882179 TCTACAAAATTCCTGTAAAAGAAGGC 58.118 34.615 2.90 0.00 33.25 4.35
437 438 5.853936 ACAAAATTCCTGTAAAAGAAGGCC 58.146 37.500 0.00 0.00 33.25 5.19
438 439 5.602561 ACAAAATTCCTGTAAAAGAAGGCCT 59.397 36.000 0.00 0.00 33.25 5.19
439 440 6.780522 ACAAAATTCCTGTAAAAGAAGGCCTA 59.219 34.615 5.16 0.00 33.25 3.93
440 441 7.289084 ACAAAATTCCTGTAAAAGAAGGCCTAA 59.711 33.333 5.16 0.00 33.25 2.69
441 442 8.314021 CAAAATTCCTGTAAAAGAAGGCCTAAT 58.686 33.333 5.16 0.00 33.25 1.73
442 443 9.541884 AAAATTCCTGTAAAAGAAGGCCTAATA 57.458 29.630 5.16 0.00 33.25 0.98
443 444 8.521170 AATTCCTGTAAAAGAAGGCCTAATAC 57.479 34.615 5.16 6.05 33.25 1.89
444 445 6.630203 TCCTGTAAAAGAAGGCCTAATACA 57.370 37.500 5.16 10.42 33.25 2.29
445 446 7.208064 TCCTGTAAAAGAAGGCCTAATACAT 57.792 36.000 5.16 0.00 33.25 2.29
446 447 8.326765 TCCTGTAAAAGAAGGCCTAATACATA 57.673 34.615 5.16 0.87 33.25 2.29
447 448 8.774183 TCCTGTAAAAGAAGGCCTAATACATAA 58.226 33.333 5.16 0.57 33.25 1.90
448 449 9.574516 CCTGTAAAAGAAGGCCTAATACATAAT 57.425 33.333 5.16 0.00 30.55 1.28
524 526 6.555812 TCGATAGAAATATGTAGCTGTCGT 57.444 37.500 0.00 0.00 46.15 4.34
548 550 0.606096 TTCAGACCCGCATTTCTCGA 59.394 50.000 0.00 0.00 0.00 4.04
588 615 2.632987 AAAGTACTTGGCTGAACGGT 57.367 45.000 9.34 0.00 0.00 4.83
694 729 3.425193 CGCAACAACCAGCAAAATTACTC 59.575 43.478 0.00 0.00 0.00 2.59
699 734 0.802494 CCAGCAAAATTACTCGCGGT 59.198 50.000 6.13 5.79 0.00 5.68
728 810 1.661341 AGCACTACCGTACTACTCCG 58.339 55.000 0.00 0.00 0.00 4.63
741 827 1.588824 TACTCCGTGTTCATCGGCGT 61.589 55.000 6.85 5.41 45.92 5.68
802 894 4.216708 ACCTACTGGTAATGCTCTACTCC 58.783 47.826 0.00 0.00 46.43 3.85
803 895 3.253677 CCTACTGGTAATGCTCTACTCCG 59.746 52.174 0.00 0.00 0.00 4.63
835 927 4.459089 GGCACGAGGGCTCACTCC 62.459 72.222 0.00 0.00 39.42 3.85
836 928 4.459089 GCACGAGGGCTCACTCCC 62.459 72.222 0.00 0.00 46.93 4.30
871 963 1.079266 CTGCTCACTGCCTCTGGAC 60.079 63.158 0.00 0.00 42.00 4.02
882 974 1.153667 CTCTGGACCGCTCTTGCTC 60.154 63.158 0.00 0.00 36.97 4.26
883 975 1.603236 CTCTGGACCGCTCTTGCTCT 61.603 60.000 0.00 0.00 36.97 4.09
884 976 1.153667 CTGGACCGCTCTTGCTCTC 60.154 63.158 0.00 0.00 36.97 3.20
885 977 1.603236 CTGGACCGCTCTTGCTCTCT 61.603 60.000 0.00 0.00 36.97 3.10
886 978 0.323451 TGGACCGCTCTTGCTCTCTA 60.323 55.000 0.00 0.00 36.97 2.43
1010 1130 0.902531 GGAGAGACAATGGACGGGAA 59.097 55.000 0.00 0.00 0.00 3.97
1017 1137 1.144093 ACAATGGACGGGAACAAAGGA 59.856 47.619 0.00 0.00 0.00 3.36
1053 1173 1.926511 GAGCGTCGGGTTTCGTAGGA 61.927 60.000 0.00 0.00 40.32 2.94
1082 1202 0.908198 GTCATGAAGCTCCTCCAGGT 59.092 55.000 0.00 0.00 36.34 4.00
1144 1264 2.260088 CTCCCTCCGTCTCCGTCTCT 62.260 65.000 0.00 0.00 0.00 3.10
1145 1265 1.820481 CCCTCCGTCTCCGTCTCTC 60.820 68.421 0.00 0.00 0.00 3.20
1146 1266 1.222387 CCTCCGTCTCCGTCTCTCT 59.778 63.158 0.00 0.00 0.00 3.10
1147 1267 0.812412 CCTCCGTCTCCGTCTCTCTC 60.812 65.000 0.00 0.00 0.00 3.20
1148 1268 0.108089 CTCCGTCTCCGTCTCTCTCA 60.108 60.000 0.00 0.00 0.00 3.27
1149 1269 0.391395 TCCGTCTCCGTCTCTCTCAC 60.391 60.000 0.00 0.00 0.00 3.51
1150 1270 0.391927 CCGTCTCCGTCTCTCTCACT 60.392 60.000 0.00 0.00 0.00 3.41
1152 1272 1.395608 CGTCTCCGTCTCTCTCACTTC 59.604 57.143 0.00 0.00 0.00 3.01
1153 1273 1.741145 GTCTCCGTCTCTCTCACTTCC 59.259 57.143 0.00 0.00 0.00 3.46
1154 1274 1.631388 TCTCCGTCTCTCTCACTTCCT 59.369 52.381 0.00 0.00 0.00 3.36
1155 1275 2.014128 CTCCGTCTCTCTCACTTCCTC 58.986 57.143 0.00 0.00 0.00 3.71
1156 1276 1.631388 TCCGTCTCTCTCACTTCCTCT 59.369 52.381 0.00 0.00 0.00 3.69
1157 1277 2.014128 CCGTCTCTCTCACTTCCTCTC 58.986 57.143 0.00 0.00 0.00 3.20
1158 1278 1.663643 CGTCTCTCTCACTTCCTCTCG 59.336 57.143 0.00 0.00 0.00 4.04
1159 1279 1.400494 GTCTCTCTCACTTCCTCTCGC 59.600 57.143 0.00 0.00 0.00 5.03
1160 1280 0.738389 CTCTCTCACTTCCTCTCGCC 59.262 60.000 0.00 0.00 0.00 5.54
1161 1281 0.038310 TCTCTCACTTCCTCTCGCCA 59.962 55.000 0.00 0.00 0.00 5.69
1162 1282 0.891373 CTCTCACTTCCTCTCGCCAA 59.109 55.000 0.00 0.00 0.00 4.52
1163 1283 0.603569 TCTCACTTCCTCTCGCCAAC 59.396 55.000 0.00 0.00 0.00 3.77
1164 1284 0.605589 CTCACTTCCTCTCGCCAACT 59.394 55.000 0.00 0.00 0.00 3.16
1165 1285 0.603569 TCACTTCCTCTCGCCAACTC 59.396 55.000 0.00 0.00 0.00 3.01
1166 1286 0.318441 CACTTCCTCTCGCCAACTCA 59.682 55.000 0.00 0.00 0.00 3.41
1167 1287 1.066573 CACTTCCTCTCGCCAACTCAT 60.067 52.381 0.00 0.00 0.00 2.90
1168 1288 2.166459 CACTTCCTCTCGCCAACTCATA 59.834 50.000 0.00 0.00 0.00 2.15
1169 1289 2.166664 ACTTCCTCTCGCCAACTCATAC 59.833 50.000 0.00 0.00 0.00 2.39
1170 1290 1.847328 TCCTCTCGCCAACTCATACA 58.153 50.000 0.00 0.00 0.00 2.29
1171 1291 1.476891 TCCTCTCGCCAACTCATACAC 59.523 52.381 0.00 0.00 0.00 2.90
1172 1292 1.550065 CTCTCGCCAACTCATACACG 58.450 55.000 0.00 0.00 0.00 4.49
1173 1293 1.132453 CTCTCGCCAACTCATACACGA 59.868 52.381 0.00 0.00 0.00 4.35
1174 1294 1.135489 TCTCGCCAACTCATACACGAC 60.135 52.381 0.00 0.00 0.00 4.34
1175 1295 0.885879 TCGCCAACTCATACACGACT 59.114 50.000 0.00 0.00 0.00 4.18
1176 1296 1.135489 TCGCCAACTCATACACGACTC 60.135 52.381 0.00 0.00 0.00 3.36
1177 1297 1.402325 CGCCAACTCATACACGACTCA 60.402 52.381 0.00 0.00 0.00 3.41
1178 1298 1.993370 GCCAACTCATACACGACTCAC 59.007 52.381 0.00 0.00 0.00 3.51
1180 1300 2.095415 CCAACTCATACACGACTCACGA 60.095 50.000 0.00 0.00 45.77 4.35
1181 1301 3.164358 CAACTCATACACGACTCACGAG 58.836 50.000 0.00 0.00 45.77 4.18
1182 1302 1.738350 ACTCATACACGACTCACGAGG 59.262 52.381 0.00 0.00 45.77 4.63
1213 1337 4.084797 ACCGCATTCGTAATTTGTTTTTGC 60.085 37.500 0.00 0.00 0.00 3.68
1220 1344 7.691890 TTCGTAATTTGTTTTTGCGTTTTTG 57.308 28.000 0.00 0.00 34.44 2.44
1249 1373 2.325583 ACGTTGAGAAGAACAAGCCA 57.674 45.000 0.00 0.00 0.00 4.75
1396 1520 2.280552 CGACTCCCAAGACCCCGAA 61.281 63.158 0.00 0.00 0.00 4.30
1405 1529 4.475747 TCCCAAGACCCCGAAGTAAATATT 59.524 41.667 0.00 0.00 0.00 1.28
1410 1534 9.162764 CCAAGACCCCGAAGTAAATATTATATG 57.837 37.037 0.00 0.00 0.00 1.78
1412 1536 7.039882 AGACCCCGAAGTAAATATTATATGCG 58.960 38.462 0.00 0.00 0.00 4.73
1415 1539 6.110707 CCCGAAGTAAATATTATATGCGGGT 58.889 40.000 20.91 0.00 46.95 5.28
1416 1540 6.257193 CCCGAAGTAAATATTATATGCGGGTC 59.743 42.308 20.91 0.39 46.95 4.46
1424 1548 4.640771 ATTATATGCGGGTCCACTGAAT 57.359 40.909 0.00 0.00 0.00 2.57
1425 1549 2.260844 ATATGCGGGTCCACTGAATG 57.739 50.000 0.00 0.00 0.00 2.67
1426 1550 1.199615 TATGCGGGTCCACTGAATGA 58.800 50.000 0.00 0.00 0.00 2.57
1427 1551 0.327924 ATGCGGGTCCACTGAATGAA 59.672 50.000 0.00 0.00 0.00 2.57
1428 1552 0.109532 TGCGGGTCCACTGAATGAAA 59.890 50.000 0.00 0.00 0.00 2.69
1429 1553 1.243902 GCGGGTCCACTGAATGAAAA 58.756 50.000 0.00 0.00 0.00 2.29
1430 1554 1.611491 GCGGGTCCACTGAATGAAAAA 59.389 47.619 0.00 0.00 0.00 1.94
1431 1555 2.607038 GCGGGTCCACTGAATGAAAAAC 60.607 50.000 0.00 0.00 0.00 2.43
1432 1556 2.030274 CGGGTCCACTGAATGAAAAACC 60.030 50.000 0.00 0.00 0.00 3.27
1433 1557 2.299013 GGGTCCACTGAATGAAAAACCC 59.701 50.000 0.00 0.00 0.00 4.11
1434 1558 2.299013 GGTCCACTGAATGAAAAACCCC 59.701 50.000 0.00 0.00 0.00 4.95
1435 1559 2.030274 GTCCACTGAATGAAAAACCCCG 60.030 50.000 0.00 0.00 0.00 5.73
1436 1560 2.158593 TCCACTGAATGAAAAACCCCGA 60.159 45.455 0.00 0.00 0.00 5.14
1437 1561 2.228822 CCACTGAATGAAAAACCCCGAG 59.771 50.000 0.00 0.00 0.00 4.63
1438 1562 2.228822 CACTGAATGAAAAACCCCGAGG 59.771 50.000 0.00 0.00 40.04 4.63
1439 1563 2.107552 ACTGAATGAAAAACCCCGAGGA 59.892 45.455 0.00 0.00 36.73 3.71
1440 1564 3.153919 CTGAATGAAAAACCCCGAGGAA 58.846 45.455 0.00 0.00 36.73 3.36
1441 1565 3.567397 TGAATGAAAAACCCCGAGGAAA 58.433 40.909 0.00 0.00 36.73 3.13
1442 1566 3.572255 TGAATGAAAAACCCCGAGGAAAG 59.428 43.478 0.00 0.00 36.73 2.62
1443 1567 2.740506 TGAAAAACCCCGAGGAAAGT 57.259 45.000 0.00 0.00 36.73 2.66
1444 1568 3.860968 TGAAAAACCCCGAGGAAAGTA 57.139 42.857 0.00 0.00 36.73 2.24
1445 1569 3.479489 TGAAAAACCCCGAGGAAAGTAC 58.521 45.455 0.00 0.00 36.73 2.73
1446 1570 2.174363 AAAACCCCGAGGAAAGTACG 57.826 50.000 0.00 0.00 36.73 3.67
1447 1571 1.051008 AAACCCCGAGGAAAGTACGT 58.949 50.000 0.00 0.00 36.73 3.57
1449 1573 1.467920 ACCCCGAGGAAAGTACGTAG 58.532 55.000 0.00 0.00 36.73 3.51
1453 1577 3.490419 CCCCGAGGAAAGTACGTAGAATG 60.490 52.174 0.00 0.00 33.47 2.67
1457 1581 5.459107 CCGAGGAAAGTACGTAGAATGAATG 59.541 44.000 0.00 0.00 0.00 2.67
1458 1582 6.263344 CGAGGAAAGTACGTAGAATGAATGA 58.737 40.000 0.00 0.00 0.00 2.57
1459 1583 6.750501 CGAGGAAAGTACGTAGAATGAATGAA 59.249 38.462 0.00 0.00 0.00 2.57
1463 1587 7.117236 GGAAAGTACGTAGAATGAATGAACACA 59.883 37.037 0.00 0.00 0.00 3.72
1464 1588 8.547967 AAAGTACGTAGAATGAATGAACACAT 57.452 30.769 0.00 0.00 0.00 3.21
1466 1590 9.817809 AAGTACGTAGAATGAATGAACACATAT 57.182 29.630 0.00 0.00 0.00 1.78
1574 1712 2.281484 GAGGCTGGCACCGTGAAA 60.281 61.111 1.65 0.00 33.69 2.69
1732 1874 3.194542 GCTTCTCTTCTCTGCCTCTTACA 59.805 47.826 0.00 0.00 0.00 2.41
1735 1877 3.131933 TCTCTTCTCTGCCTCTTACATGC 59.868 47.826 0.00 0.00 0.00 4.06
1759 1917 6.756299 TGAAGCAGCAATAATAACATGTCA 57.244 33.333 0.00 0.00 0.00 3.58
1761 1919 7.028962 TGAAGCAGCAATAATAACATGTCAAC 58.971 34.615 0.00 0.00 0.00 3.18
2125 2283 2.063979 CCCCGAGTACAGCATCCCA 61.064 63.158 0.00 0.00 0.00 4.37
2128 2286 0.179100 CCGAGTACAGCATCCCACAG 60.179 60.000 0.00 0.00 0.00 3.66
2140 2298 1.071471 CCCACAGAAGTTCGCAGGT 59.929 57.895 0.00 0.00 0.00 4.00
2399 2560 5.481472 CGTGAATACTATTCTTGTGTTCGC 58.519 41.667 9.69 0.00 40.29 4.70
2612 2778 6.861065 AACTGCGACACTTATTATTATGGG 57.139 37.500 0.00 0.00 0.00 4.00
2615 2781 5.919755 TGCGACACTTATTATTATGGGTCA 58.080 37.500 11.34 0.00 36.27 4.02
2621 2787 7.736893 ACACTTATTATTATGGGTCAGAGGTC 58.263 38.462 0.00 0.00 0.00 3.85
2633 2799 4.081807 GGGTCAGAGGTCGTAACATTTACT 60.082 45.833 0.00 0.00 0.00 2.24
2853 3019 1.384643 ACCACTGCCTATCTCCCCC 60.385 63.158 0.00 0.00 0.00 5.40
2899 3065 1.615392 GTTCCAAGCTTCCTGCACAAT 59.385 47.619 0.00 0.00 45.94 2.71
3271 3437 6.923508 CCACAAGAAAAGGATTAAAAGTGACC 59.076 38.462 0.00 0.00 0.00 4.02
3316 3482 3.878778 AGTGATTTGACTGATGGGTAGC 58.121 45.455 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.781056 ACTCTATTTTCAAACACCAAACACAT 58.219 30.769 0.00 0.00 0.00 3.21
2 3 8.379902 CAAACTCTATTTTCAAACACCAAACAC 58.620 33.333 0.00 0.00 0.00 3.32
3 4 8.091449 ACAAACTCTATTTTCAAACACCAAACA 58.909 29.630 0.00 0.00 0.00 2.83
4 5 8.379902 CACAAACTCTATTTTCAAACACCAAAC 58.620 33.333 0.00 0.00 0.00 2.93
5 6 7.547370 CCACAAACTCTATTTTCAAACACCAAA 59.453 33.333 0.00 0.00 0.00 3.28
6 7 7.038659 CCACAAACTCTATTTTCAAACACCAA 58.961 34.615 0.00 0.00 0.00 3.67
7 8 6.153680 ACCACAAACTCTATTTTCAAACACCA 59.846 34.615 0.00 0.00 0.00 4.17
8 9 6.569780 ACCACAAACTCTATTTTCAAACACC 58.430 36.000 0.00 0.00 0.00 4.16
9 10 7.544217 ACAACCACAAACTCTATTTTCAAACAC 59.456 33.333 0.00 0.00 0.00 3.32
10 11 7.607250 ACAACCACAAACTCTATTTTCAAACA 58.393 30.769 0.00 0.00 0.00 2.83
11 12 9.575783 TTACAACCACAAACTCTATTTTCAAAC 57.424 29.630 0.00 0.00 0.00 2.93
14 15 9.743057 CATTTACAACCACAAACTCTATTTTCA 57.257 29.630 0.00 0.00 0.00 2.69
15 16 9.191995 CCATTTACAACCACAAACTCTATTTTC 57.808 33.333 0.00 0.00 0.00 2.29
16 17 7.655732 GCCATTTACAACCACAAACTCTATTTT 59.344 33.333 0.00 0.00 0.00 1.82
17 18 7.151976 GCCATTTACAACCACAAACTCTATTT 58.848 34.615 0.00 0.00 0.00 1.40
18 19 6.266558 TGCCATTTACAACCACAAACTCTATT 59.733 34.615 0.00 0.00 0.00 1.73
19 20 5.772672 TGCCATTTACAACCACAAACTCTAT 59.227 36.000 0.00 0.00 0.00 1.98
20 21 5.133941 TGCCATTTACAACCACAAACTCTA 58.866 37.500 0.00 0.00 0.00 2.43
21 22 3.957497 TGCCATTTACAACCACAAACTCT 59.043 39.130 0.00 0.00 0.00 3.24
22 23 4.314740 TGCCATTTACAACCACAAACTC 57.685 40.909 0.00 0.00 0.00 3.01
23 24 4.744795 TTGCCATTTACAACCACAAACT 57.255 36.364 0.00 0.00 0.00 2.66
24 25 4.813697 ACATTGCCATTTACAACCACAAAC 59.186 37.500 0.00 0.00 0.00 2.93
25 26 5.028549 ACATTGCCATTTACAACCACAAA 57.971 34.783 0.00 0.00 0.00 2.83
26 27 4.679373 ACATTGCCATTTACAACCACAA 57.321 36.364 0.00 0.00 0.00 3.33
27 28 4.679373 AACATTGCCATTTACAACCACA 57.321 36.364 0.00 0.00 0.00 4.17
28 29 5.053145 TCAAACATTGCCATTTACAACCAC 58.947 37.500 0.00 0.00 0.00 4.16
29 30 5.282055 TCAAACATTGCCATTTACAACCA 57.718 34.783 0.00 0.00 0.00 3.67
30 31 4.690280 CCTCAAACATTGCCATTTACAACC 59.310 41.667 0.00 0.00 0.00 3.77
31 32 4.152223 GCCTCAAACATTGCCATTTACAAC 59.848 41.667 0.00 0.00 0.00 3.32
32 33 4.314121 GCCTCAAACATTGCCATTTACAA 58.686 39.130 0.00 0.00 0.00 2.41
33 34 3.306641 GGCCTCAAACATTGCCATTTACA 60.307 43.478 0.00 0.00 43.46 2.41
34 35 3.055891 AGGCCTCAAACATTGCCATTTAC 60.056 43.478 0.00 0.00 46.45 2.01
35 36 3.055963 CAGGCCTCAAACATTGCCATTTA 60.056 43.478 0.00 0.00 46.45 1.40
36 37 1.980036 AGGCCTCAAACATTGCCATTT 59.020 42.857 0.00 0.00 46.45 2.32
37 38 1.276989 CAGGCCTCAAACATTGCCATT 59.723 47.619 0.00 0.00 46.45 3.16
38 39 0.899720 CAGGCCTCAAACATTGCCAT 59.100 50.000 0.00 0.00 46.45 4.40
39 40 1.818959 GCAGGCCTCAAACATTGCCA 61.819 55.000 0.00 0.00 46.45 4.92
40 41 1.079612 GCAGGCCTCAAACATTGCC 60.080 57.895 0.00 0.00 44.35 4.52
41 42 1.079612 GGCAGGCCTCAAACATTGC 60.080 57.895 0.00 0.31 0.00 3.56
42 43 1.186917 TGGGCAGGCCTCAAACATTG 61.187 55.000 15.38 0.00 36.10 2.82
43 44 0.901580 CTGGGCAGGCCTCAAACATT 60.902 55.000 15.38 0.00 36.10 2.71
44 45 1.304713 CTGGGCAGGCCTCAAACAT 60.305 57.895 15.38 0.00 36.10 2.71
45 46 2.115910 CTGGGCAGGCCTCAAACA 59.884 61.111 15.38 0.00 36.10 2.83
46 47 3.376918 GCTGGGCAGGCCTCAAAC 61.377 66.667 15.38 0.00 36.10 2.93
47 48 4.684134 GGCTGGGCAGGCCTCAAA 62.684 66.667 15.38 0.00 46.99 2.69
54 55 2.757099 GGACAATGGCTGGGCAGG 60.757 66.667 2.90 0.66 0.00 4.85
55 56 3.136123 CGGACAATGGCTGGGCAG 61.136 66.667 2.90 0.00 0.00 4.85
90 91 2.181021 CCCTACACGTCTGCGGAC 59.819 66.667 16.12 16.12 43.45 4.79
91 92 2.034532 TCCCTACACGTCTGCGGA 59.965 61.111 0.00 0.00 43.45 5.54
92 93 2.181021 GTCCCTACACGTCTGCGG 59.819 66.667 0.00 0.00 43.45 5.69
93 94 2.181021 GGTCCCTACACGTCTGCG 59.819 66.667 0.00 0.00 44.93 5.18
94 95 2.577593 GGGTCCCTACACGTCTGC 59.422 66.667 0.00 0.00 0.00 4.26
100 101 1.046204 CCTAATCCGGGTCCCTACAC 58.954 60.000 6.29 0.00 0.00 2.90
101 102 0.761702 GCCTAATCCGGGTCCCTACA 60.762 60.000 6.29 0.00 0.00 2.74
102 103 0.761702 TGCCTAATCCGGGTCCCTAC 60.762 60.000 6.29 0.00 0.00 3.18
103 104 0.030909 TTGCCTAATCCGGGTCCCTA 60.031 55.000 6.29 0.00 0.00 3.53
104 105 0.697854 ATTGCCTAATCCGGGTCCCT 60.698 55.000 6.29 0.00 0.00 4.20
105 106 0.185175 AATTGCCTAATCCGGGTCCC 59.815 55.000 0.00 0.00 0.00 4.46
106 107 1.954382 GAAATTGCCTAATCCGGGTCC 59.046 52.381 0.00 0.00 0.00 4.46
107 108 1.602377 CGAAATTGCCTAATCCGGGTC 59.398 52.381 0.00 0.00 0.00 4.46
108 109 1.210967 TCGAAATTGCCTAATCCGGGT 59.789 47.619 0.00 0.00 0.00 5.28
109 110 1.961793 TCGAAATTGCCTAATCCGGG 58.038 50.000 0.00 0.00 0.00 5.73
110 111 3.315191 ACAATCGAAATTGCCTAATCCGG 59.685 43.478 0.00 0.00 45.16 5.14
111 112 4.552166 ACAATCGAAATTGCCTAATCCG 57.448 40.909 0.00 0.00 45.16 4.18
112 113 6.861065 TCTACAATCGAAATTGCCTAATCC 57.139 37.500 0.00 0.00 45.16 3.01
113 114 6.798959 GCATCTACAATCGAAATTGCCTAATC 59.201 38.462 0.00 0.00 45.16 1.75
114 115 6.488006 AGCATCTACAATCGAAATTGCCTAAT 59.512 34.615 0.00 0.00 45.16 1.73
115 116 5.822519 AGCATCTACAATCGAAATTGCCTAA 59.177 36.000 0.00 0.00 45.16 2.69
116 117 5.368145 AGCATCTACAATCGAAATTGCCTA 58.632 37.500 0.00 0.00 45.16 3.93
117 118 4.202441 AGCATCTACAATCGAAATTGCCT 58.798 39.130 0.00 0.00 45.16 4.75
118 119 4.531332 GAGCATCTACAATCGAAATTGCC 58.469 43.478 0.00 0.00 45.16 4.52
134 135 4.904241 ACCATAGAAGGCATTAGAGCATC 58.096 43.478 0.00 0.00 35.83 3.91
135 136 4.989875 ACCATAGAAGGCATTAGAGCAT 57.010 40.909 0.00 0.00 35.83 3.79
136 137 4.164030 TGAACCATAGAAGGCATTAGAGCA 59.836 41.667 0.00 0.00 35.83 4.26
137 138 4.708177 TGAACCATAGAAGGCATTAGAGC 58.292 43.478 0.00 0.00 0.00 4.09
138 139 7.038729 TCCTATGAACCATAGAAGGCATTAGAG 60.039 40.741 13.80 0.00 44.55 2.43
139 140 6.787458 TCCTATGAACCATAGAAGGCATTAGA 59.213 38.462 13.80 0.00 44.55 2.10
140 141 7.009179 TCCTATGAACCATAGAAGGCATTAG 57.991 40.000 13.80 0.00 44.55 1.73
141 142 7.574021 ATCCTATGAACCATAGAAGGCATTA 57.426 36.000 13.80 0.00 44.55 1.90
142 143 5.912149 TCCTATGAACCATAGAAGGCATT 57.088 39.130 13.80 0.00 44.55 3.56
143 144 7.761981 ATATCCTATGAACCATAGAAGGCAT 57.238 36.000 13.80 0.00 44.55 4.40
144 145 7.345653 CCTATATCCTATGAACCATAGAAGGCA 59.654 40.741 13.80 0.00 44.55 4.75
145 146 7.202047 CCCTATATCCTATGAACCATAGAAGGC 60.202 44.444 13.80 0.00 44.55 4.35
146 147 8.068110 TCCCTATATCCTATGAACCATAGAAGG 58.932 40.741 13.80 11.27 44.55 3.46
147 148 9.667607 ATCCCTATATCCTATGAACCATAGAAG 57.332 37.037 13.80 1.15 44.55 2.85
152 153 9.386122 GTGATATCCCTATATCCTATGAACCAT 57.614 37.037 0.00 0.00 42.29 3.55
153 154 8.351414 TGTGATATCCCTATATCCTATGAACCA 58.649 37.037 0.00 0.00 42.29 3.67
154 155 8.783660 TGTGATATCCCTATATCCTATGAACC 57.216 38.462 0.00 0.00 42.29 3.62
155 156 8.865090 CCTGTGATATCCCTATATCCTATGAAC 58.135 40.741 0.00 0.00 42.29 3.18
156 157 8.801645 TCCTGTGATATCCCTATATCCTATGAA 58.198 37.037 0.00 0.00 42.29 2.57
157 158 8.363377 TCCTGTGATATCCCTATATCCTATGA 57.637 38.462 0.00 0.00 42.29 2.15
158 159 9.612879 ATTCCTGTGATATCCCTATATCCTATG 57.387 37.037 0.00 0.00 42.29 2.23
161 162 8.238060 CCTATTCCTGTGATATCCCTATATCCT 58.762 40.741 0.00 0.00 42.29 3.24
162 163 7.456269 CCCTATTCCTGTGATATCCCTATATCC 59.544 44.444 0.00 0.00 42.29 2.59
163 164 8.235230 TCCCTATTCCTGTGATATCCCTATATC 58.765 40.741 0.00 0.00 42.97 1.63
164 165 8.143167 TCCCTATTCCTGTGATATCCCTATAT 57.857 38.462 0.00 0.00 0.00 0.86
165 166 7.554597 TCCCTATTCCTGTGATATCCCTATA 57.445 40.000 0.00 0.00 0.00 1.31
166 167 6.438111 TCCCTATTCCTGTGATATCCCTAT 57.562 41.667 0.00 0.00 0.00 2.57
167 168 5.896530 TCCCTATTCCTGTGATATCCCTA 57.103 43.478 0.00 0.00 0.00 3.53
168 169 4.785173 TCCCTATTCCTGTGATATCCCT 57.215 45.455 0.00 0.00 0.00 4.20
169 170 5.843019 TTTCCCTATTCCTGTGATATCCC 57.157 43.478 0.00 0.00 0.00 3.85
170 171 7.020827 TGATTTCCCTATTCCTGTGATATCC 57.979 40.000 0.00 0.00 0.00 2.59
173 174 9.392506 TCTTATGATTTCCCTATTCCTGTGATA 57.607 33.333 0.00 0.00 0.00 2.15
174 175 8.280258 TCTTATGATTTCCCTATTCCTGTGAT 57.720 34.615 0.00 0.00 0.00 3.06
175 176 7.690454 TCTTATGATTTCCCTATTCCTGTGA 57.310 36.000 0.00 0.00 0.00 3.58
176 177 8.752005 TTTCTTATGATTTCCCTATTCCTGTG 57.248 34.615 0.00 0.00 0.00 3.66
177 178 9.359653 CATTTCTTATGATTTCCCTATTCCTGT 57.640 33.333 0.00 0.00 0.00 4.00
178 179 8.302438 GCATTTCTTATGATTTCCCTATTCCTG 58.698 37.037 0.00 0.00 0.00 3.86
179 180 7.175641 CGCATTTCTTATGATTTCCCTATTCCT 59.824 37.037 0.00 0.00 0.00 3.36
180 181 7.174946 TCGCATTTCTTATGATTTCCCTATTCC 59.825 37.037 0.00 0.00 0.00 3.01
181 182 8.099364 TCGCATTTCTTATGATTTCCCTATTC 57.901 34.615 0.00 0.00 0.00 1.75
182 183 8.517878 CATCGCATTTCTTATGATTTCCCTATT 58.482 33.333 0.00 0.00 0.00 1.73
183 184 7.884877 TCATCGCATTTCTTATGATTTCCCTAT 59.115 33.333 0.00 0.00 0.00 2.57
184 185 7.173218 GTCATCGCATTTCTTATGATTTCCCTA 59.827 37.037 0.00 0.00 31.49 3.53
185 186 6.016777 GTCATCGCATTTCTTATGATTTCCCT 60.017 38.462 0.00 0.00 31.49 4.20
186 187 6.145535 GTCATCGCATTTCTTATGATTTCCC 58.854 40.000 0.00 0.00 31.49 3.97
187 188 5.848036 CGTCATCGCATTTCTTATGATTTCC 59.152 40.000 0.00 0.00 31.49 3.13
188 189 6.355405 CACGTCATCGCATTTCTTATGATTTC 59.645 38.462 0.00 0.00 41.18 2.17
189 190 6.183360 ACACGTCATCGCATTTCTTATGATTT 60.183 34.615 0.00 0.00 41.18 2.17
190 191 5.294306 ACACGTCATCGCATTTCTTATGATT 59.706 36.000 0.00 0.00 41.18 2.57
191 192 4.811024 ACACGTCATCGCATTTCTTATGAT 59.189 37.500 0.00 0.00 41.18 2.45
192 193 4.180817 ACACGTCATCGCATTTCTTATGA 58.819 39.130 0.00 0.00 41.18 2.15
193 194 4.520743 ACACGTCATCGCATTTCTTATG 57.479 40.909 0.00 0.00 41.18 1.90
194 195 6.216569 AGATACACGTCATCGCATTTCTTAT 58.783 36.000 0.00 0.00 41.18 1.73
195 196 5.588240 AGATACACGTCATCGCATTTCTTA 58.412 37.500 0.00 0.00 41.18 2.10
196 197 4.433615 AGATACACGTCATCGCATTTCTT 58.566 39.130 0.00 0.00 41.18 2.52
197 198 4.045104 GAGATACACGTCATCGCATTTCT 58.955 43.478 5.78 0.00 41.18 2.52
198 199 3.796717 TGAGATACACGTCATCGCATTTC 59.203 43.478 8.47 0.00 41.18 2.17
199 200 3.780902 TGAGATACACGTCATCGCATTT 58.219 40.909 8.47 0.00 41.18 2.32
200 201 3.436700 TGAGATACACGTCATCGCATT 57.563 42.857 8.47 0.00 41.18 3.56
201 202 3.436700 TTGAGATACACGTCATCGCAT 57.563 42.857 12.05 0.00 41.18 4.73
202 203 2.931512 TTGAGATACACGTCATCGCA 57.068 45.000 8.47 8.47 41.18 5.10
203 204 4.504461 AGAAATTGAGATACACGTCATCGC 59.496 41.667 4.13 4.13 41.18 4.58
204 205 7.859613 ATAGAAATTGAGATACACGTCATCG 57.140 36.000 0.00 0.00 43.34 3.84
205 206 9.347934 CCTATAGAAATTGAGATACACGTCATC 57.652 37.037 0.00 0.00 0.00 2.92
206 207 9.078990 TCCTATAGAAATTGAGATACACGTCAT 57.921 33.333 0.00 0.00 0.00 3.06
207 208 8.459911 TCCTATAGAAATTGAGATACACGTCA 57.540 34.615 0.00 0.00 0.00 4.35
208 209 9.745880 TTTCCTATAGAAATTGAGATACACGTC 57.254 33.333 0.00 0.00 39.60 4.34
302 303 8.991026 GGACAAAAATCAATCATTCACATTTCA 58.009 29.630 0.00 0.00 0.00 2.69
303 304 9.211485 AGGACAAAAATCAATCATTCACATTTC 57.789 29.630 0.00 0.00 0.00 2.17
305 306 9.643693 GTAGGACAAAAATCAATCATTCACATT 57.356 29.630 0.00 0.00 0.00 2.71
306 307 8.805175 TGTAGGACAAAAATCAATCATTCACAT 58.195 29.630 0.00 0.00 0.00 3.21
307 308 8.175925 TGTAGGACAAAAATCAATCATTCACA 57.824 30.769 0.00 0.00 0.00 3.58
311 312 9.754382 GCATATGTAGGACAAAAATCAATCATT 57.246 29.630 4.29 0.00 0.00 2.57
312 313 8.916062 TGCATATGTAGGACAAAAATCAATCAT 58.084 29.630 4.29 0.00 0.00 2.45
313 314 8.291191 TGCATATGTAGGACAAAAATCAATCA 57.709 30.769 4.29 0.00 0.00 2.57
316 317 8.849168 CCTATGCATATGTAGGACAAAAATCAA 58.151 33.333 6.92 0.00 39.91 2.57
317 318 8.217111 TCCTATGCATATGTAGGACAAAAATCA 58.783 33.333 15.03 0.00 41.09 2.57
318 319 8.621532 TCCTATGCATATGTAGGACAAAAATC 57.378 34.615 15.03 0.00 41.09 2.17
319 320 8.995027 TTCCTATGCATATGTAGGACAAAAAT 57.005 30.769 17.57 0.00 44.57 1.82
320 321 8.995027 ATTCCTATGCATATGTAGGACAAAAA 57.005 30.769 17.57 7.17 44.57 1.94
321 322 8.217111 TGATTCCTATGCATATGTAGGACAAAA 58.783 33.333 17.57 7.46 44.57 2.44
322 323 7.744733 TGATTCCTATGCATATGTAGGACAAA 58.255 34.615 17.57 7.73 44.57 2.83
323 324 7.315066 TGATTCCTATGCATATGTAGGACAA 57.685 36.000 17.57 8.29 44.57 3.18
324 325 6.933514 TGATTCCTATGCATATGTAGGACA 57.066 37.500 17.57 12.38 44.57 4.02
325 326 8.798859 AATTGATTCCTATGCATATGTAGGAC 57.201 34.615 17.57 10.52 44.57 3.85
326 327 9.453572 GAAATTGATTCCTATGCATATGTAGGA 57.546 33.333 15.03 15.03 43.54 2.94
342 343 7.040409 ACACTTTGGTCTGTAGGAAATTGATTC 60.040 37.037 0.00 0.00 37.31 2.52
343 344 6.777580 ACACTTTGGTCTGTAGGAAATTGATT 59.222 34.615 0.00 0.00 0.00 2.57
344 345 6.306987 ACACTTTGGTCTGTAGGAAATTGAT 58.693 36.000 0.00 0.00 0.00 2.57
345 346 5.690865 ACACTTTGGTCTGTAGGAAATTGA 58.309 37.500 0.00 0.00 0.00 2.57
346 347 6.391227 AACACTTTGGTCTGTAGGAAATTG 57.609 37.500 0.00 0.00 0.00 2.32
347 348 6.605594 TGAAACACTTTGGTCTGTAGGAAATT 59.394 34.615 0.00 0.00 0.00 1.82
348 349 6.126409 TGAAACACTTTGGTCTGTAGGAAAT 58.874 36.000 0.00 0.00 0.00 2.17
349 350 5.502079 TGAAACACTTTGGTCTGTAGGAAA 58.498 37.500 0.00 0.00 0.00 3.13
350 351 5.105567 TGAAACACTTTGGTCTGTAGGAA 57.894 39.130 0.00 0.00 0.00 3.36
351 352 4.764050 TGAAACACTTTGGTCTGTAGGA 57.236 40.909 0.00 0.00 0.00 2.94
352 353 5.588648 TCTTTGAAACACTTTGGTCTGTAGG 59.411 40.000 0.00 0.00 0.00 3.18
353 354 6.677781 TCTTTGAAACACTTTGGTCTGTAG 57.322 37.500 0.00 0.00 0.00 2.74
354 355 7.455641 TTTCTTTGAAACACTTTGGTCTGTA 57.544 32.000 0.00 0.00 0.00 2.74
355 356 5.975693 TTCTTTGAAACACTTTGGTCTGT 57.024 34.783 0.00 0.00 0.00 3.41
356 357 7.832503 AATTTCTTTGAAACACTTTGGTCTG 57.167 32.000 0.00 0.00 0.00 3.51
357 358 8.846943 AAAATTTCTTTGAAACACTTTGGTCT 57.153 26.923 0.00 0.00 0.00 3.85
358 359 8.175069 GGAAAATTTCTTTGAAACACTTTGGTC 58.825 33.333 5.65 0.00 0.00 4.02
359 360 7.882791 AGGAAAATTTCTTTGAAACACTTTGGT 59.117 29.630 5.65 0.00 0.00 3.67
360 361 8.267620 AGGAAAATTTCTTTGAAACACTTTGG 57.732 30.769 5.65 0.00 0.00 3.28
362 363 9.599866 CCTAGGAAAATTTCTTTGAAACACTTT 57.400 29.630 1.05 0.00 0.00 2.66
363 364 8.977412 TCCTAGGAAAATTTCTTTGAAACACTT 58.023 29.630 9.71 0.00 0.00 3.16
364 365 8.533569 TCCTAGGAAAATTTCTTTGAAACACT 57.466 30.769 9.71 0.00 0.00 3.55
365 366 9.594478 TTTCCTAGGAAAATTTCTTTGAAACAC 57.406 29.630 30.63 0.00 40.63 3.32
380 381 9.686683 CTGAAGGATAGAAATTTTCCTAGGAAA 57.313 33.333 29.41 29.41 38.96 3.13
381 382 9.057911 TCTGAAGGATAGAAATTTTCCTAGGAA 57.942 33.333 20.72 20.72 38.96 3.36
382 383 8.624019 TCTGAAGGATAGAAATTTTCCTAGGA 57.376 34.615 7.62 7.62 38.96 2.94
383 384 9.859152 ATTCTGAAGGATAGAAATTTTCCTAGG 57.141 33.333 9.78 0.82 38.96 3.02
398 399 9.539194 AGGAATTTTGTAGAAATTCTGAAGGAT 57.461 29.630 18.30 0.00 42.94 3.24
399 400 8.796475 CAGGAATTTTGTAGAAATTCTGAAGGA 58.204 33.333 18.30 0.00 42.94 3.36
400 401 8.579863 ACAGGAATTTTGTAGAAATTCTGAAGG 58.420 33.333 18.30 9.78 42.94 3.46
410 411 8.357402 GCCTTCTTTTACAGGAATTTTGTAGAA 58.643 33.333 4.58 5.76 33.00 2.10
411 412 7.039993 GGCCTTCTTTTACAGGAATTTTGTAGA 60.040 37.037 0.00 0.00 33.00 2.59
412 413 7.039714 AGGCCTTCTTTTACAGGAATTTTGTAG 60.040 37.037 0.00 0.00 33.00 2.74
413 414 6.780522 AGGCCTTCTTTTACAGGAATTTTGTA 59.219 34.615 0.00 1.00 30.81 2.41
414 415 5.602561 AGGCCTTCTTTTACAGGAATTTTGT 59.397 36.000 0.00 2.66 30.81 2.83
415 416 6.101650 AGGCCTTCTTTTACAGGAATTTTG 57.898 37.500 0.00 0.00 30.81 2.44
416 417 7.849322 TTAGGCCTTCTTTTACAGGAATTTT 57.151 32.000 12.58 0.00 30.81 1.82
417 418 8.967918 GTATTAGGCCTTCTTTTACAGGAATTT 58.032 33.333 12.58 0.00 30.81 1.82
418 419 8.113462 TGTATTAGGCCTTCTTTTACAGGAATT 58.887 33.333 12.58 0.00 30.81 2.17
419 420 7.639378 TGTATTAGGCCTTCTTTTACAGGAAT 58.361 34.615 12.58 1.92 30.81 3.01
420 421 7.023171 TGTATTAGGCCTTCTTTTACAGGAA 57.977 36.000 12.58 0.00 30.81 3.36
421 422 6.630203 TGTATTAGGCCTTCTTTTACAGGA 57.370 37.500 12.58 0.00 30.81 3.86
422 423 8.974060 TTATGTATTAGGCCTTCTTTTACAGG 57.026 34.615 12.58 0.00 30.48 4.00
427 428 9.794719 GGAGTATTATGTATTAGGCCTTCTTTT 57.205 33.333 12.58 0.00 0.00 2.27
428 429 8.945193 TGGAGTATTATGTATTAGGCCTTCTTT 58.055 33.333 12.58 0.00 0.00 2.52
429 430 8.506196 TGGAGTATTATGTATTAGGCCTTCTT 57.494 34.615 12.58 0.00 0.00 2.52
430 431 8.686739 ATGGAGTATTATGTATTAGGCCTTCT 57.313 34.615 12.58 0.15 0.00 2.85
433 434 9.784376 TCTTATGGAGTATTATGTATTAGGCCT 57.216 33.333 11.78 11.78 0.00 5.19
440 441 9.950496 CAAGGCTTCTTATGGAGTATTATGTAT 57.050 33.333 0.00 0.00 0.00 2.29
441 442 7.878127 GCAAGGCTTCTTATGGAGTATTATGTA 59.122 37.037 0.00 0.00 0.00 2.29
442 443 6.712547 GCAAGGCTTCTTATGGAGTATTATGT 59.287 38.462 0.00 0.00 0.00 2.29
443 444 6.939163 AGCAAGGCTTCTTATGGAGTATTATG 59.061 38.462 0.00 0.00 33.89 1.90
444 445 6.939163 CAGCAAGGCTTCTTATGGAGTATTAT 59.061 38.462 0.00 0.00 36.40 1.28
445 446 6.099701 TCAGCAAGGCTTCTTATGGAGTATTA 59.900 38.462 0.00 0.00 36.40 0.98
446 447 5.104360 TCAGCAAGGCTTCTTATGGAGTATT 60.104 40.000 0.00 0.00 36.40 1.89
447 448 4.410228 TCAGCAAGGCTTCTTATGGAGTAT 59.590 41.667 0.00 0.00 36.40 2.12
448 449 3.774766 TCAGCAAGGCTTCTTATGGAGTA 59.225 43.478 0.00 0.00 36.40 2.59
449 450 2.573462 TCAGCAAGGCTTCTTATGGAGT 59.427 45.455 0.00 0.00 36.40 3.85
450 451 3.272574 TCAGCAAGGCTTCTTATGGAG 57.727 47.619 0.00 0.00 36.40 3.86
451 452 3.939740 ATCAGCAAGGCTTCTTATGGA 57.060 42.857 0.00 0.00 36.40 3.41
452 453 3.949754 TCAATCAGCAAGGCTTCTTATGG 59.050 43.478 0.00 0.00 36.40 2.74
458 459 3.693085 TCAGAATCAATCAGCAAGGCTTC 59.307 43.478 0.00 0.00 36.40 3.86
548 550 4.497291 TTTTTACGTGCCCATCTCCTAT 57.503 40.909 0.00 0.00 0.00 2.57
588 615 1.174783 GGGAGCTTGAGACGTGACTA 58.825 55.000 0.00 0.00 0.00 2.59
596 623 3.077556 GCGGGAGGGAGCTTGAGA 61.078 66.667 0.00 0.00 0.00 3.27
716 751 2.538333 CGATGAACACGGAGTAGTACGG 60.538 54.545 7.20 0.00 41.61 4.02
717 757 2.701807 CGATGAACACGGAGTAGTACG 58.298 52.381 0.00 0.00 41.61 3.67
728 810 2.041244 GTTTGAAACGCCGATGAACAC 58.959 47.619 0.00 0.00 0.00 3.32
741 827 1.674962 CCCACCGGTTTACGTTTGAAA 59.325 47.619 2.97 0.00 42.24 2.69
802 894 2.195922 GTGCCGTTGGTACCTAATACG 58.804 52.381 14.36 15.99 34.22 3.06
803 895 2.159254 TCGTGCCGTTGGTACCTAATAC 60.159 50.000 14.36 5.33 34.84 1.89
856 948 2.575993 CGGTCCAGAGGCAGTGAG 59.424 66.667 0.00 0.00 0.00 3.51
907 1013 0.383949 TTGGCCACTTGCTTCGTTTC 59.616 50.000 3.88 0.00 40.92 2.78
1010 1130 2.380285 ACCACCACCGGTCCTTTGT 61.380 57.895 2.59 0.00 32.11 2.83
1133 1253 1.741145 GGAAGTGAGAGAGACGGAGAC 59.259 57.143 0.00 0.00 0.00 3.36
1138 1258 1.663643 CGAGAGGAAGTGAGAGAGACG 59.336 57.143 0.00 0.00 0.00 4.18
1139 1259 1.400494 GCGAGAGGAAGTGAGAGAGAC 59.600 57.143 0.00 0.00 0.00 3.36
1144 1264 0.603569 GTTGGCGAGAGGAAGTGAGA 59.396 55.000 0.00 0.00 0.00 3.27
1145 1265 0.605589 AGTTGGCGAGAGGAAGTGAG 59.394 55.000 0.00 0.00 0.00 3.51
1146 1266 0.603569 GAGTTGGCGAGAGGAAGTGA 59.396 55.000 0.00 0.00 0.00 3.41
1147 1267 0.318441 TGAGTTGGCGAGAGGAAGTG 59.682 55.000 0.00 0.00 0.00 3.16
1148 1268 1.270907 ATGAGTTGGCGAGAGGAAGT 58.729 50.000 0.00 0.00 0.00 3.01
1149 1269 2.166459 TGTATGAGTTGGCGAGAGGAAG 59.834 50.000 0.00 0.00 0.00 3.46
1150 1270 2.094182 GTGTATGAGTTGGCGAGAGGAA 60.094 50.000 0.00 0.00 0.00 3.36
1152 1272 1.799181 CGTGTATGAGTTGGCGAGAGG 60.799 57.143 0.00 0.00 0.00 3.69
1153 1273 1.132453 TCGTGTATGAGTTGGCGAGAG 59.868 52.381 0.00 0.00 0.00 3.20
1154 1274 1.135489 GTCGTGTATGAGTTGGCGAGA 60.135 52.381 0.00 0.00 0.00 4.04
1155 1275 1.135373 AGTCGTGTATGAGTTGGCGAG 60.135 52.381 0.00 0.00 0.00 5.03
1156 1276 0.885879 AGTCGTGTATGAGTTGGCGA 59.114 50.000 0.00 0.00 0.00 5.54
1157 1277 1.269166 GAGTCGTGTATGAGTTGGCG 58.731 55.000 0.00 0.00 0.00 5.69
1158 1278 1.993370 GTGAGTCGTGTATGAGTTGGC 59.007 52.381 0.00 0.00 0.00 4.52
1159 1279 2.095415 TCGTGAGTCGTGTATGAGTTGG 60.095 50.000 0.00 0.00 40.80 3.77
1160 1280 3.164358 CTCGTGAGTCGTGTATGAGTTG 58.836 50.000 0.00 0.00 40.80 3.16
1161 1281 2.161808 CCTCGTGAGTCGTGTATGAGTT 59.838 50.000 0.00 0.00 40.80 3.01
1162 1282 1.738350 CCTCGTGAGTCGTGTATGAGT 59.262 52.381 0.00 0.00 40.80 3.41
1163 1283 1.738350 ACCTCGTGAGTCGTGTATGAG 59.262 52.381 0.00 0.00 40.80 2.90
1164 1284 1.817357 ACCTCGTGAGTCGTGTATGA 58.183 50.000 0.00 0.00 40.80 2.15
1165 1285 2.539142 GCTACCTCGTGAGTCGTGTATG 60.539 54.545 0.00 0.00 40.80 2.39
1166 1286 1.669779 GCTACCTCGTGAGTCGTGTAT 59.330 52.381 0.00 0.00 40.80 2.29
1167 1287 1.081892 GCTACCTCGTGAGTCGTGTA 58.918 55.000 0.00 0.00 40.80 2.90
1168 1288 0.605860 AGCTACCTCGTGAGTCGTGT 60.606 55.000 0.00 0.00 40.80 4.49
1169 1289 0.522180 AAGCTACCTCGTGAGTCGTG 59.478 55.000 0.00 0.00 40.80 4.35
1170 1290 0.522180 CAAGCTACCTCGTGAGTCGT 59.478 55.000 0.00 0.00 40.80 4.34
1171 1291 0.803117 TCAAGCTACCTCGTGAGTCG 59.197 55.000 0.00 0.00 41.41 4.18
1172 1292 1.135344 GGTCAAGCTACCTCGTGAGTC 60.135 57.143 0.00 0.00 36.53 3.36
1173 1293 0.889306 GGTCAAGCTACCTCGTGAGT 59.111 55.000 0.00 0.00 36.53 3.41
1174 1294 0.179161 CGGTCAAGCTACCTCGTGAG 60.179 60.000 4.18 0.00 37.39 3.51
1175 1295 1.880894 CGGTCAAGCTACCTCGTGA 59.119 57.895 4.18 0.00 37.39 4.35
1176 1296 1.805945 GCGGTCAAGCTACCTCGTG 60.806 63.158 4.18 0.00 37.39 4.35
1177 1297 1.605058 ATGCGGTCAAGCTACCTCGT 61.605 55.000 4.18 0.00 37.39 4.18
1178 1298 0.460284 AATGCGGTCAAGCTACCTCG 60.460 55.000 4.18 0.17 37.39 4.63
1179 1299 1.291132 GAATGCGGTCAAGCTACCTC 58.709 55.000 4.18 0.00 37.39 3.85
1180 1300 0.460284 CGAATGCGGTCAAGCTACCT 60.460 55.000 4.18 0.00 37.39 3.08
1181 1301 0.739813 ACGAATGCGGTCAAGCTACC 60.740 55.000 0.00 0.00 43.17 3.18
1182 1302 1.917273 TACGAATGCGGTCAAGCTAC 58.083 50.000 0.00 0.00 43.17 3.58
1213 1337 1.063469 ACGTTGGCTGAGACAAAAACG 59.937 47.619 0.38 5.79 44.28 3.60
1220 1344 1.795286 CTTCTCAACGTTGGCTGAGAC 59.205 52.381 27.02 0.00 45.93 3.36
1249 1373 2.262774 CTCCGGGAAGCTCCAGCAAT 62.263 60.000 0.00 0.00 45.16 3.56
1309 1433 2.095252 GTCGTCGAAGCTGCCTTCC 61.095 63.158 0.00 0.00 43.66 3.46
1396 1520 7.038587 TCAGTGGACCCGCATATAATATTTACT 60.039 37.037 2.17 0.00 0.00 2.24
1405 1529 2.969262 TCATTCAGTGGACCCGCATATA 59.031 45.455 2.17 0.00 0.00 0.86
1410 1534 1.243902 TTTTCATTCAGTGGACCCGC 58.756 50.000 0.00 0.00 0.00 6.13
1412 1536 2.299013 GGGTTTTTCATTCAGTGGACCC 59.701 50.000 0.00 0.00 0.00 4.46
1415 1539 2.158593 TCGGGGTTTTTCATTCAGTGGA 60.159 45.455 0.00 0.00 0.00 4.02
1416 1540 2.228822 CTCGGGGTTTTTCATTCAGTGG 59.771 50.000 0.00 0.00 0.00 4.00
1424 1548 2.740506 ACTTTCCTCGGGGTTTTTCA 57.259 45.000 0.00 0.00 0.00 2.69
1425 1549 2.481568 CGTACTTTCCTCGGGGTTTTTC 59.518 50.000 0.00 0.00 0.00 2.29
1426 1550 2.158769 ACGTACTTTCCTCGGGGTTTTT 60.159 45.455 0.00 0.00 0.00 1.94
1427 1551 1.417517 ACGTACTTTCCTCGGGGTTTT 59.582 47.619 0.00 0.00 0.00 2.43
1428 1552 1.051008 ACGTACTTTCCTCGGGGTTT 58.949 50.000 0.00 0.00 0.00 3.27
1429 1553 1.821136 CTACGTACTTTCCTCGGGGTT 59.179 52.381 0.00 0.00 0.00 4.11
1430 1554 1.004745 TCTACGTACTTTCCTCGGGGT 59.995 52.381 0.00 0.00 0.00 4.95
1431 1555 1.755179 TCTACGTACTTTCCTCGGGG 58.245 55.000 0.00 0.00 0.00 5.73
1432 1556 3.379372 TCATTCTACGTACTTTCCTCGGG 59.621 47.826 0.00 0.00 0.00 5.14
1433 1557 4.627611 TCATTCTACGTACTTTCCTCGG 57.372 45.455 0.00 0.00 0.00 4.63
1434 1558 6.263344 TCATTCATTCTACGTACTTTCCTCG 58.737 40.000 0.00 0.00 0.00 4.63
1435 1559 7.544566 TGTTCATTCATTCTACGTACTTTCCTC 59.455 37.037 0.00 0.00 0.00 3.71
1436 1560 7.331193 GTGTTCATTCATTCTACGTACTTTCCT 59.669 37.037 0.00 0.00 0.00 3.36
1437 1561 7.117236 TGTGTTCATTCATTCTACGTACTTTCC 59.883 37.037 0.00 0.00 0.00 3.13
1438 1562 8.014322 TGTGTTCATTCATTCTACGTACTTTC 57.986 34.615 0.00 0.00 0.00 2.62
1439 1563 7.956420 TGTGTTCATTCATTCTACGTACTTT 57.044 32.000 0.00 0.00 0.00 2.66
1440 1564 9.817809 ATATGTGTTCATTCATTCTACGTACTT 57.182 29.630 0.00 0.00 35.70 2.24
1466 1590 9.687210 CAGTTTTGCATCCGTATTAGTACTATA 57.313 33.333 2.79 0.00 0.00 1.31
1470 1594 6.897259 TCAGTTTTGCATCCGTATTAGTAC 57.103 37.500 0.00 0.00 0.00 2.73
1475 1599 4.082300 TGCATTCAGTTTTGCATCCGTATT 60.082 37.500 0.00 0.00 43.54 1.89
1476 1600 3.443329 TGCATTCAGTTTTGCATCCGTAT 59.557 39.130 0.00 0.00 43.54 3.06
1479 1603 2.095110 TCTGCATTCAGTTTTGCATCCG 60.095 45.455 0.00 0.00 46.87 4.18
1480 1604 3.581024 TCTGCATTCAGTTTTGCATCC 57.419 42.857 0.00 0.00 46.87 3.51
1481 1605 3.362831 CGTTCTGCATTCAGTTTTGCATC 59.637 43.478 0.00 0.00 46.87 3.91
1482 1606 3.004629 TCGTTCTGCATTCAGTTTTGCAT 59.995 39.130 0.00 0.00 46.87 3.96
1483 1607 2.357323 TCGTTCTGCATTCAGTTTTGCA 59.643 40.909 0.00 0.00 46.03 4.08
1485 1609 3.003689 ACCTCGTTCTGCATTCAGTTTTG 59.996 43.478 0.00 0.00 41.10 2.44
1486 1610 3.003689 CACCTCGTTCTGCATTCAGTTTT 59.996 43.478 0.00 0.00 41.10 2.43
1487 1611 2.549754 CACCTCGTTCTGCATTCAGTTT 59.450 45.455 0.00 0.00 41.10 2.66
1489 1613 1.344438 TCACCTCGTTCTGCATTCAGT 59.656 47.619 0.00 0.00 41.10 3.41
1490 1614 2.084610 TCACCTCGTTCTGCATTCAG 57.915 50.000 0.00 0.00 41.67 3.02
1574 1712 1.751924 GAGGAGGTGAAGACTATGCGT 59.248 52.381 0.00 0.00 0.00 5.24
1580 1718 1.985116 GGCGGAGGAGGTGAAGACT 60.985 63.158 0.00 0.00 0.00 3.24
1735 1877 6.788243 TGACATGTTATTATTGCTGCTTCAG 58.212 36.000 0.00 0.00 34.12 3.02
1758 1916 0.041312 CTGCAAAACCCGACTCGTTG 60.041 55.000 0.00 0.00 0.00 4.10
1759 1917 0.179067 TCTGCAAAACCCGACTCGTT 60.179 50.000 0.00 0.00 0.00 3.85
1761 1919 0.443869 CATCTGCAAAACCCGACTCG 59.556 55.000 0.00 0.00 0.00 4.18
1936 2094 2.686106 TAGTGGGCCTCGTTCCCC 60.686 66.667 4.53 4.02 43.24 4.81
2125 2283 0.597637 CGACACCTGCGAACTTCTGT 60.598 55.000 0.00 0.00 0.00 3.41
2128 2286 1.606350 CGTCGACACCTGCGAACTTC 61.606 60.000 17.16 0.00 39.73 3.01
2350 2508 3.971032 GCGCTGGCTTATTATGTTTCT 57.029 42.857 0.00 0.00 35.83 2.52
2377 2538 6.403333 TGCGAACACAAGAATAGTATTCAC 57.597 37.500 22.00 0.11 0.00 3.18
2612 2778 5.100943 GGAGTAAATGTTACGACCTCTGAC 58.899 45.833 0.00 0.00 0.00 3.51
2615 2781 5.997384 AAGGAGTAAATGTTACGACCTCT 57.003 39.130 15.04 7.60 32.27 3.69
2621 2787 6.402875 GCCCAAGTAAAGGAGTAAATGTTACG 60.403 42.308 0.00 0.00 31.45 3.18
2633 2799 3.806949 ACATTCAGCCCAAGTAAAGGA 57.193 42.857 0.00 0.00 0.00 3.36
2853 3019 1.329906 CAATTCTGCAGAGCGCTAAGG 59.670 52.381 17.43 3.57 43.06 2.69
2899 3065 4.433615 GAGACTAAATCATCGTGCTTCCA 58.566 43.478 0.00 0.00 0.00 3.53
3188 3354 5.069251 AGTTCCCCTCACAGATCTTATTACG 59.931 44.000 0.00 0.00 0.00 3.18
3194 3360 2.569404 GTCAGTTCCCCTCACAGATCTT 59.431 50.000 0.00 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.