Multiple sequence alignment - TraesCS3D01G223700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G223700 chr3D 100.000 2771 0 0 1 2771 305321148 305323918 0.000000e+00 5118.0
1 TraesCS3D01G223700 chr3D 81.481 81 13 2 1279 1358 63460724 63460645 6.410000e-07 65.8
2 TraesCS3D01G223700 chr3A 90.673 2734 154 46 19 2711 429483362 429480689 0.000000e+00 3542.0
3 TraesCS3D01G223700 chr3A 95.312 64 3 0 2703 2766 423158250 423158313 4.880000e-18 102.0
4 TraesCS3D01G223700 chr3A 97.297 37 1 0 1279 1315 72897686 72897650 2.300000e-06 63.9
5 TraesCS3D01G223700 chr3B 89.111 1800 83 48 19 1779 416515314 416513589 0.000000e+00 2134.0
6 TraesCS3D01G223700 chr3B 87.808 853 61 14 1945 2771 416513392 416512557 0.000000e+00 959.0
7 TraesCS3D01G223700 chr3B 92.424 66 4 1 1832 1897 416513459 416513395 2.940000e-15 93.5
8 TraesCS3D01G223700 chr1A 84.305 223 32 3 1263 1484 569139384 569139164 6.010000e-52 215.0
9 TraesCS3D01G223700 chr1D 83.186 226 35 3 1263 1487 474510343 474510120 1.300000e-48 204.0
10 TraesCS3D01G223700 chr1D 82.292 96 15 2 1283 1377 8997436 8997342 6.360000e-12 82.4
11 TraesCS3D01G223700 chr5D 76.108 406 71 12 2363 2754 218048845 218048452 3.640000e-44 189.0
12 TraesCS3D01G223700 chr4D 75.397 378 86 6 2357 2729 468261844 468261469 2.840000e-40 176.0
13 TraesCS3D01G223700 chr4D 85.915 71 10 0 2659 2729 468261467 468261397 2.960000e-10 76.8
14 TraesCS3D01G223700 chr2A 81.871 171 24 7 2587 2754 598165183 598165349 1.340000e-28 137.0
15 TraesCS3D01G223700 chr6D 82.895 152 22 3 2587 2735 463218170 463218020 1.730000e-27 134.0
16 TraesCS3D01G223700 chr6A 83.544 79 11 2 1280 1357 1126508 1126585 3.830000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G223700 chr3D 305321148 305323918 2770 False 5118.000000 5118 100.000 1 2771 1 chr3D.!!$F1 2770
1 TraesCS3D01G223700 chr3A 429480689 429483362 2673 True 3542.000000 3542 90.673 19 2711 1 chr3A.!!$R2 2692
2 TraesCS3D01G223700 chr3B 416512557 416515314 2757 True 1062.166667 2134 89.781 19 2771 3 chr3B.!!$R1 2752

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
817 861 0.109458 TGCACGTGCCTTCTACTACG 60.109 55.0 35.72 0.0 41.18 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2015 2154 0.037697 ACAAACCGCTGATCGTGCTA 60.038 50.0 8.52 0.0 36.19 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 69 5.409214 GCGTACATTAGTGAACTTAACCCAA 59.591 40.000 0.00 0.00 0.00 4.12
61 70 6.619232 GCGTACATTAGTGAACTTAACCCAAC 60.619 42.308 0.00 0.00 0.00 3.77
86 95 2.695359 TGGTTCTAGCACACGAATTCC 58.305 47.619 0.00 0.00 0.00 3.01
88 97 2.415512 GGTTCTAGCACACGAATTCCAC 59.584 50.000 0.00 0.00 0.00 4.02
102 111 4.622933 CGAATTCCACCCATCTGAGTTACA 60.623 45.833 0.00 0.00 0.00 2.41
223 237 5.763698 AGCACATCTATCAATCAATCCACTG 59.236 40.000 0.00 0.00 0.00 3.66
416 430 0.806102 CGATCGTTCCATCGCCAACT 60.806 55.000 7.03 0.00 39.32 3.16
472 486 6.275381 TGAGATGAGATCTATCCTCTCCTCTT 59.725 42.308 15.35 0.00 41.72 2.85
491 506 2.100605 TGTTTGGTTTGGTTTGGTGC 57.899 45.000 0.00 0.00 0.00 5.01
522 537 2.593257 GTTACAGCTGTACGTGTCCTC 58.407 52.381 26.02 6.04 0.00 3.71
558 575 3.437795 ATTGCAGCAGTGAGGCGC 61.438 61.111 0.00 0.00 39.27 6.53
622 650 9.720769 ATTATAAGTTAACCCGACTATGGAATG 57.279 33.333 0.88 0.00 0.00 2.67
757 795 1.375013 GTTGCAAATGCCAGGCCAG 60.375 57.895 9.64 0.00 41.18 4.85
787 825 1.220749 GGGCACGTGGCTCTAATCA 59.779 57.895 36.61 0.00 41.00 2.57
814 858 0.319900 CACTGCACGTGCCTTCTACT 60.320 55.000 35.72 8.77 41.18 2.57
815 859 1.067846 CACTGCACGTGCCTTCTACTA 60.068 52.381 35.72 15.05 41.18 1.82
816 860 1.067776 ACTGCACGTGCCTTCTACTAC 60.068 52.381 35.72 6.80 41.18 2.73
817 861 0.109458 TGCACGTGCCTTCTACTACG 60.109 55.000 35.72 0.00 41.18 3.51
819 863 1.131126 GCACGTGCCTTCTACTACGTA 59.869 52.381 30.12 0.00 46.62 3.57
839 883 0.840617 TATTACCAATGCCGCCCTCA 59.159 50.000 0.00 0.00 0.00 3.86
922 966 1.967535 CTCAGCTTCACCGAGGACA 59.032 57.895 0.00 0.00 0.00 4.02
925 969 1.006102 AGCTTCACCGAGGACAACG 60.006 57.895 0.00 0.00 0.00 4.10
965 1009 2.039418 TCCCGAGAGAGAGAGAGAGAG 58.961 57.143 0.00 0.00 0.00 3.20
966 1010 2.039418 CCCGAGAGAGAGAGAGAGAGA 58.961 57.143 0.00 0.00 0.00 3.10
967 1011 2.036475 CCCGAGAGAGAGAGAGAGAGAG 59.964 59.091 0.00 0.00 0.00 3.20
968 1012 2.959030 CCGAGAGAGAGAGAGAGAGAGA 59.041 54.545 0.00 0.00 0.00 3.10
969 1013 3.005261 CCGAGAGAGAGAGAGAGAGAGAG 59.995 56.522 0.00 0.00 0.00 3.20
970 1014 3.885901 CGAGAGAGAGAGAGAGAGAGAGA 59.114 52.174 0.00 0.00 0.00 3.10
971 1015 4.023279 CGAGAGAGAGAGAGAGAGAGAGAG 60.023 54.167 0.00 0.00 0.00 3.20
972 1016 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
973 1017 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
974 1018 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
975 1019 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
976 1020 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
977 1021 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
978 1022 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
979 1023 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
980 1024 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
981 1025 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
982 1026 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
987 1031 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
990 1034 5.598005 AGAGAGAGAGAGAGAGAGAGAGAAG 59.402 48.000 0.00 0.00 0.00 2.85
1194 1239 4.558178 CCAAGATTTTGTAGTGCATTGCA 58.442 39.130 7.38 7.38 32.00 4.08
1197 1242 2.049077 TTTTGTAGTGCATTGCAGCG 57.951 45.000 12.53 0.00 40.08 5.18
1210 1255 2.577449 TGCAGCGAGTTGAATATCGA 57.423 45.000 6.90 0.00 41.40 3.59
1380 1426 1.760086 CATCCGGGAGCTCCACTCT 60.760 63.158 33.29 12.84 45.48 3.24
1499 1548 2.671177 CGCACCAGAACCAGCTTCG 61.671 63.158 0.00 0.00 33.60 3.79
1501 1550 1.294659 GCACCAGAACCAGCTTCGAG 61.295 60.000 0.00 0.00 33.60 4.04
1502 1551 1.004440 ACCAGAACCAGCTTCGAGC 60.004 57.895 0.00 0.00 42.84 5.03
1616 1677 2.295602 GCTTCCCTTACCCCGACCA 61.296 63.158 0.00 0.00 0.00 4.02
1651 1712 1.957695 GACCACCACGAAACGGTCC 60.958 63.158 0.00 0.00 41.77 4.46
1686 1747 4.736896 ACGCGCTTCTTCCCGTCC 62.737 66.667 5.73 0.00 0.00 4.79
1799 1889 4.021456 TCGTCCTCTTTATTCTGCACTTCA 60.021 41.667 0.00 0.00 0.00 3.02
1830 1968 5.464722 TGCATGCTACTAGTACTACTACGTC 59.535 44.000 20.33 0.00 0.00 4.34
1847 1985 6.084925 ACTACGTCTATTTGACAGAGAAACG 58.915 40.000 0.00 0.00 45.60 3.60
1899 2037 1.003233 GTGTAAGCAAGGCAGTAGGGT 59.997 52.381 0.00 0.00 0.00 4.34
1900 2038 2.235402 GTGTAAGCAAGGCAGTAGGGTA 59.765 50.000 0.00 0.00 0.00 3.69
1901 2039 3.112263 TGTAAGCAAGGCAGTAGGGTAT 58.888 45.455 0.00 0.00 0.00 2.73
1902 2040 3.521937 TGTAAGCAAGGCAGTAGGGTATT 59.478 43.478 0.00 0.00 0.00 1.89
1903 2041 4.717778 TGTAAGCAAGGCAGTAGGGTATTA 59.282 41.667 0.00 0.00 0.00 0.98
1904 2042 5.368523 TGTAAGCAAGGCAGTAGGGTATTAT 59.631 40.000 0.00 0.00 0.00 1.28
1905 2043 6.555738 TGTAAGCAAGGCAGTAGGGTATTATA 59.444 38.462 0.00 0.00 0.00 0.98
1906 2044 5.485209 AGCAAGGCAGTAGGGTATTATAC 57.515 43.478 0.00 0.00 0.00 1.47
1907 2045 5.155905 AGCAAGGCAGTAGGGTATTATACT 58.844 41.667 2.21 0.00 32.44 2.12
1908 2046 6.320518 AGCAAGGCAGTAGGGTATTATACTA 58.679 40.000 2.21 0.00 31.10 1.82
1909 2047 6.960542 AGCAAGGCAGTAGGGTATTATACTAT 59.039 38.462 2.21 0.00 31.10 2.12
1943 2081 1.860676 TGTGCTGTAAACTGGTCGAC 58.139 50.000 7.13 7.13 0.00 4.20
1947 2085 2.288579 TGCTGTAAACTGGTCGACGAAT 60.289 45.455 9.92 0.00 0.00 3.34
1974 2113 1.086634 GTTCCGATGAGTGAGCAGGC 61.087 60.000 0.00 0.00 0.00 4.85
2015 2154 5.460646 CATGTGCACTTTTAATTTCGGACT 58.539 37.500 19.41 0.00 0.00 3.85
2049 2188 3.128349 GGTTTGTAACGTGCTCTCAAGA 58.872 45.455 0.00 0.00 0.00 3.02
2186 2325 2.964209 CCTTCCTGCCTAGTCCTATCA 58.036 52.381 0.00 0.00 0.00 2.15
2249 2388 1.035385 TTCGAGCATCTACGGCTGGA 61.035 55.000 0.00 0.00 43.06 3.86
2264 2403 0.622665 CTGGACTCCTCAAATGCCCT 59.377 55.000 0.00 0.00 0.00 5.19
2270 2409 4.822350 GGACTCCTCAAATGCCCTTTATAC 59.178 45.833 0.00 0.00 0.00 1.47
2299 2449 4.351938 TGGCGAACGGTCTGGTCG 62.352 66.667 14.99 14.99 0.00 4.79
2320 2470 1.289380 GACCAGTCCGAAACTCGCT 59.711 57.895 0.00 0.00 38.82 4.93
2385 2548 1.153369 CGCCACAATGGATCCGACT 60.153 57.895 7.39 0.00 40.96 4.18
2407 2570 3.826157 TGACAGGACCCATCACAAATTTC 59.174 43.478 0.00 0.00 0.00 2.17
2505 2670 2.044555 TGTCGTCACCCTAGCTCCG 61.045 63.158 0.00 0.00 0.00 4.63
2546 2711 3.202001 CGCCACCACCGCCATAAG 61.202 66.667 0.00 0.00 0.00 1.73
2557 2722 1.486726 CCGCCATAAGACTCCTCCTTT 59.513 52.381 0.00 0.00 0.00 3.11
2559 2724 2.432510 CGCCATAAGACTCCTCCTTTCT 59.567 50.000 0.00 0.00 0.00 2.52
2631 2796 1.750778 CACCTTGCCTTCTGTGTGTTT 59.249 47.619 0.00 0.00 0.00 2.83
2665 2830 6.899114 TCCGAGCAGTTTTCTTATTCTTTTC 58.101 36.000 0.00 0.00 0.00 2.29
2683 2848 5.354234 TCTTTTCTAGGCAAAACGATGGATC 59.646 40.000 0.00 0.00 0.00 3.36
2694 2859 1.123077 CGATGGATCTGGAGGGTTCA 58.877 55.000 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.967245 CTGAATTTATTTCTATTTTCGTGACGA 57.033 29.630 2.39 2.39 35.23 4.20
4 5 9.967245 TCTGAATTTATTTCTATTTTCGTGACG 57.033 29.630 0.00 0.00 35.23 4.35
16 17 9.906660 TGTACGCATTTTTCTGAATTTATTTCT 57.093 25.926 0.00 0.00 35.23 2.52
40 43 5.613329 TCGTTGGGTTAAGTTCACTAATGT 58.387 37.500 0.00 0.00 0.00 2.71
60 69 1.135373 CGTGTGCTAGAACCATCTCGT 60.135 52.381 0.00 0.00 37.10 4.18
61 70 1.132453 TCGTGTGCTAGAACCATCTCG 59.868 52.381 0.00 0.00 37.10 4.04
102 111 2.365617 ACTGAACATGGACGAGTTGAGT 59.634 45.455 0.00 0.00 37.36 3.41
223 237 2.478335 TTTGGGAGGGATCACCGTGC 62.478 60.000 0.00 0.00 46.96 5.34
328 342 2.510238 GATGCTTGGCTCTCGCGT 60.510 61.111 5.77 0.00 36.88 6.01
472 486 1.347707 TGCACCAAACCAAACCAAACA 59.652 42.857 0.00 0.00 0.00 2.83
491 506 2.807895 CTGTAACCCCGTCGCGTG 60.808 66.667 5.77 0.00 0.00 5.34
522 537 2.016704 GCACACTCGACGGTGACAG 61.017 63.158 19.06 11.27 40.13 3.51
558 575 5.047519 AGCTCATTCTTTCCTGTTCCATTTG 60.048 40.000 0.00 0.00 0.00 2.32
600 617 5.662208 TCCATTCCATAGTCGGGTTAACTTA 59.338 40.000 5.42 0.00 0.00 2.24
601 618 4.472108 TCCATTCCATAGTCGGGTTAACTT 59.528 41.667 5.42 0.00 0.00 2.66
615 643 3.845781 AGTGCTACGAATCCATTCCAT 57.154 42.857 0.00 0.00 33.28 3.41
618 646 2.285834 CGCAAGTGCTACGAATCCATTC 60.286 50.000 1.21 0.00 39.32 2.67
619 647 1.665679 CGCAAGTGCTACGAATCCATT 59.334 47.619 1.21 0.00 39.32 3.16
620 648 1.134818 TCGCAAGTGCTACGAATCCAT 60.135 47.619 1.21 0.00 39.32 3.41
621 649 0.245266 TCGCAAGTGCTACGAATCCA 59.755 50.000 1.21 0.00 39.32 3.41
622 650 1.523095 GATCGCAAGTGCTACGAATCC 59.477 52.381 1.21 0.00 39.56 3.01
757 795 1.139520 CGTGCCCCTAAATTGCTGC 59.860 57.895 0.00 0.00 0.00 5.25
814 858 3.587923 GGCGGCATTGGTAATATACGTA 58.412 45.455 3.07 0.00 0.00 3.57
815 859 2.419667 GGCGGCATTGGTAATATACGT 58.580 47.619 3.07 0.00 0.00 3.57
816 860 1.735571 GGGCGGCATTGGTAATATACG 59.264 52.381 12.47 0.00 0.00 3.06
817 861 3.007635 GAGGGCGGCATTGGTAATATAC 58.992 50.000 12.47 0.00 0.00 1.47
818 862 2.640332 TGAGGGCGGCATTGGTAATATA 59.360 45.455 12.47 0.00 0.00 0.86
819 863 1.423541 TGAGGGCGGCATTGGTAATAT 59.576 47.619 12.47 0.00 0.00 1.28
839 883 1.792006 GGTGTTTATATAGGCGCGCT 58.208 50.000 32.29 19.12 0.00 5.92
922 966 2.594592 GGAGCCCAGTGTTGCGTT 60.595 61.111 0.00 0.00 0.00 4.84
925 969 1.673665 CAGAGGAGCCCAGTGTTGC 60.674 63.158 0.00 0.00 0.00 4.17
965 1009 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
966 1010 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
967 1011 5.738783 GCTTCTCTCTCTCTCTCTCTCTCTC 60.739 52.000 0.00 0.00 0.00 3.20
968 1012 4.100808 GCTTCTCTCTCTCTCTCTCTCTCT 59.899 50.000 0.00 0.00 0.00 3.10
969 1013 4.100808 AGCTTCTCTCTCTCTCTCTCTCTC 59.899 50.000 0.00 0.00 0.00 3.20
970 1014 4.036518 AGCTTCTCTCTCTCTCTCTCTCT 58.963 47.826 0.00 0.00 0.00 3.10
971 1015 4.125703 CAGCTTCTCTCTCTCTCTCTCTC 58.874 52.174 0.00 0.00 0.00 3.20
972 1016 3.776969 TCAGCTTCTCTCTCTCTCTCTCT 59.223 47.826 0.00 0.00 0.00 3.10
973 1017 3.873952 GTCAGCTTCTCTCTCTCTCTCTC 59.126 52.174 0.00 0.00 0.00 3.20
974 1018 3.370953 GGTCAGCTTCTCTCTCTCTCTCT 60.371 52.174 0.00 0.00 0.00 3.10
975 1019 2.945668 GGTCAGCTTCTCTCTCTCTCTC 59.054 54.545 0.00 0.00 0.00 3.20
976 1020 2.308570 TGGTCAGCTTCTCTCTCTCTCT 59.691 50.000 0.00 0.00 0.00 3.10
977 1021 2.684881 CTGGTCAGCTTCTCTCTCTCTC 59.315 54.545 0.00 0.00 0.00 3.20
978 1022 2.621407 CCTGGTCAGCTTCTCTCTCTCT 60.621 54.545 0.00 0.00 0.00 3.10
979 1023 1.750778 CCTGGTCAGCTTCTCTCTCTC 59.249 57.143 0.00 0.00 0.00 3.20
980 1024 1.357420 TCCTGGTCAGCTTCTCTCTCT 59.643 52.381 0.00 0.00 0.00 3.10
981 1025 1.846007 TCCTGGTCAGCTTCTCTCTC 58.154 55.000 0.00 0.00 0.00 3.20
982 1026 2.109774 CATCCTGGTCAGCTTCTCTCT 58.890 52.381 0.00 0.00 0.00 3.10
987 1031 1.452833 GGCCATCCTGGTCAGCTTC 60.453 63.158 0.00 0.00 42.98 3.86
1177 1221 2.228582 TCGCTGCAATGCACTACAAAAT 59.771 40.909 2.72 0.00 33.79 1.82
1194 1239 3.898517 TCGATCGATATTCAACTCGCT 57.101 42.857 15.15 0.00 34.94 4.93
1197 1242 7.804614 ATAAGCTTCGATCGATATTCAACTC 57.195 36.000 20.18 0.94 0.00 3.01
1360 1406 1.743321 GAGTGGAGCTCCCGGATGAG 61.743 65.000 29.95 2.49 38.27 2.90
1380 1426 0.774908 CCCACTTGTTCCCCAACCTA 59.225 55.000 0.00 0.00 0.00 3.08
1686 1747 1.136446 CAAAAGTTACCGCCGAACTCG 60.136 52.381 0.00 0.00 36.10 4.18
1767 1828 7.632721 CAGAATAAAGAGGACGAGTCTACTAC 58.367 42.308 3.09 0.00 0.00 2.73
1768 1829 6.260493 GCAGAATAAAGAGGACGAGTCTACTA 59.740 42.308 3.09 0.00 0.00 1.82
1769 1830 5.066764 GCAGAATAAAGAGGACGAGTCTACT 59.933 44.000 3.09 0.90 0.00 2.57
1770 1831 5.163642 TGCAGAATAAAGAGGACGAGTCTAC 60.164 44.000 3.09 0.00 0.00 2.59
1799 1889 4.651503 AGTACTAGTAGCATGCATCCAAGT 59.348 41.667 21.98 17.29 0.00 3.16
1830 1968 3.125316 GTGCCCGTTTCTCTGTCAAATAG 59.875 47.826 0.00 0.00 0.00 1.73
1839 1977 1.080025 GCGTAGTGCCCGTTTCTCT 60.080 57.895 0.00 0.00 37.76 3.10
1847 1985 2.573609 ATCAAGTCCGCGTAGTGCCC 62.574 60.000 4.92 0.00 42.08 5.36
1905 2043 9.284968 ACAGCACAACTTCTTGTAAATAATAGT 57.715 29.630 0.00 0.00 38.66 2.12
1909 2047 9.724839 GTTTACAGCACAACTTCTTGTAAATAA 57.275 29.630 10.22 0.00 38.66 1.40
1943 2081 2.935849 TCATCGGAACAACCATGATTCG 59.064 45.455 0.00 0.00 38.90 3.34
1947 2085 2.301583 TCACTCATCGGAACAACCATGA 59.698 45.455 0.00 0.00 38.90 3.07
1974 2113 1.060937 GCATTTGCTAGCACGTCCG 59.939 57.895 19.17 5.69 38.21 4.79
2015 2154 0.037697 ACAAACCGCTGATCGTGCTA 60.038 50.000 8.52 0.00 36.19 3.49
2049 2188 0.879090 GGAAGTCGCCAAATTTCCGT 59.121 50.000 7.42 0.00 30.77 4.69
2249 2388 4.080526 ACGTATAAAGGGCATTTGAGGAGT 60.081 41.667 7.49 0.00 32.01 3.85
2280 2430 3.934391 GACCAGACCGTTCGCCAGG 62.934 68.421 0.00 0.00 0.00 4.45
2282 2432 4.351938 CGACCAGACCGTTCGCCA 62.352 66.667 0.00 0.00 0.00 5.69
2286 2436 1.372623 GTCACCGACCAGACCGTTC 60.373 63.158 0.00 0.00 0.00 3.95
2299 2449 0.666577 CGAGTTTCGGACTGGTCACC 60.667 60.000 3.10 0.00 39.19 4.02
2306 2456 0.896940 TGGGTAGCGAGTTTCGGACT 60.897 55.000 0.34 0.00 40.84 3.85
2310 2460 3.782042 GCTGGGTAGCGAGTTTCG 58.218 61.111 5.82 0.00 43.89 3.46
2320 2470 2.625883 CCGGATATGGGATAGCTGGGTA 60.626 54.545 0.00 0.00 42.58 3.69
2369 2532 1.066215 TGTCAGTCGGATCCATTGTGG 60.066 52.381 13.41 0.00 39.43 4.17
2374 2537 1.115467 GTCCTGTCAGTCGGATCCAT 58.885 55.000 13.41 0.00 0.00 3.41
2385 2548 3.524095 AATTTGTGATGGGTCCTGTCA 57.476 42.857 0.00 0.00 0.00 3.58
2407 2570 1.820877 GCTAGGCCTGGGGATTTGATG 60.821 57.143 17.99 0.00 0.00 3.07
2487 2652 2.044555 CGGAGCTAGGGTGACGACA 61.045 63.158 0.00 0.00 0.00 4.35
2546 2711 3.118920 GGCAAGACTAGAAAGGAGGAGTC 60.119 52.174 0.00 0.00 38.89 3.36
2557 2722 2.842188 TACGGGGCGGCAAGACTAGA 62.842 60.000 12.47 0.00 0.00 2.43
2559 2724 2.362760 TACGGGGCGGCAAGACTA 60.363 61.111 12.47 0.00 0.00 2.59
2631 2796 4.647424 AAACTGCTCGGAAAATTTGTCA 57.353 36.364 0.00 0.00 0.00 3.58
2665 2830 2.874701 CCAGATCCATCGTTTTGCCTAG 59.125 50.000 0.00 0.00 0.00 3.02
2683 2848 1.069823 CTCATCCGATGAACCCTCCAG 59.930 57.143 12.16 0.00 39.11 3.86
2694 2859 4.474394 TGTCTTGATACTCCTCATCCGAT 58.526 43.478 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.