Multiple sequence alignment - TraesCS3D01G223200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G223200 chr3D 100.000 4944 0 0 1 4944 304035781 304030838 0.000000e+00 9130.0
1 TraesCS3D01G223200 chr3D 84.211 57 9 0 460 516 441447230 441447286 6.910000e-04 56.5
2 TraesCS3D01G223200 chr3A 93.020 2278 118 18 1828 4077 430522508 430524772 0.000000e+00 3288.0
3 TraesCS3D01G223200 chr3A 91.667 1008 38 15 712 1706 430521535 430522509 0.000000e+00 1354.0
4 TraesCS3D01G223200 chr3A 84.168 619 75 11 4 613 430519901 430520505 3.320000e-161 579.0
5 TraesCS3D01G223200 chr3A 84.243 641 47 19 4211 4838 430524801 430525400 4.290000e-160 575.0
6 TraesCS3D01G223200 chr3B 95.985 1345 35 11 3151 4491 417370222 417371551 0.000000e+00 2167.0
7 TraesCS3D01G223200 chr3B 94.444 1332 63 7 1828 3153 417368815 417370141 0.000000e+00 2039.0
8 TraesCS3D01G223200 chr3B 93.672 964 41 10 712 1668 417367843 417368793 0.000000e+00 1424.0
9 TraesCS3D01G223200 chr3B 97.030 303 9 0 4580 4882 417373165 417373467 1.230000e-140 510.0
10 TraesCS3D01G223200 chr3B 94.030 134 6 2 1699 1830 224273030 224272897 8.390000e-48 202.0
11 TraesCS3D01G223200 chr3B 91.579 95 6 2 4483 4575 417371513 417371607 4.020000e-26 130.0
12 TraesCS3D01G223200 chr5A 81.584 505 86 5 7 507 238466982 238466481 1.280000e-110 411.0
13 TraesCS3D01G223200 chr5B 95.420 131 3 3 1698 1826 411518793 411518922 6.490000e-49 206.0
14 TraesCS3D01G223200 chr5B 88.462 104 8 3 609 708 403909376 403909273 6.720000e-24 122.0
15 TraesCS3D01G223200 chr2B 96.063 127 4 1 1701 1826 545760383 545760509 6.490000e-49 206.0
16 TraesCS3D01G223200 chr2B 79.654 231 36 7 291 516 621198750 621198974 6.630000e-34 156.0
17 TraesCS3D01G223200 chr7D 93.478 138 7 2 1703 1839 617211473 617211609 2.330000e-48 204.0
18 TraesCS3D01G223200 chr7D 91.724 145 9 3 1698 1839 194601654 194601798 1.090000e-46 198.0
19 TraesCS3D01G223200 chr7D 89.320 103 7 4 610 708 568028763 568028661 5.200000e-25 126.0
20 TraesCS3D01G223200 chr7A 94.656 131 5 2 1705 1833 121932806 121932676 8.390000e-48 202.0
21 TraesCS3D01G223200 chr7A 82.857 70 12 0 3212 3281 649151438 649151369 4.130000e-06 63.9
22 TraesCS3D01G223200 chr6B 92.754 138 8 2 1700 1835 660666020 660665883 1.090000e-46 198.0
23 TraesCS3D01G223200 chr6B 91.156 147 8 5 1682 1826 707499501 707499644 1.400000e-45 195.0
24 TraesCS3D01G223200 chr4B 92.857 140 5 5 1701 1836 576982435 576982573 1.090000e-46 198.0
25 TraesCS3D01G223200 chr1D 90.291 103 7 3 608 708 454508564 454508665 1.120000e-26 132.0
26 TraesCS3D01G223200 chr1D 88.073 109 8 5 605 708 196817850 196817742 1.870000e-24 124.0
27 TraesCS3D01G223200 chr2D 88.785 107 7 5 607 708 316333943 316334049 5.200000e-25 126.0
28 TraesCS3D01G223200 chr2D 87.387 111 9 5 603 708 24312184 24312294 6.720000e-24 122.0
29 TraesCS3D01G223200 chr1B 85.950 121 11 6 593 708 416773529 416773410 1.870000e-24 124.0
30 TraesCS3D01G223200 chr4A 87.963 108 8 5 606 708 691244358 691244465 6.720000e-24 122.0
31 TraesCS3D01G223200 chr5D 87.273 110 9 5 604 708 274578004 274578113 2.420000e-23 121.0
32 TraesCS3D01G223200 chr6A 88.889 54 6 0 463 516 317599455 317599402 3.190000e-07 67.6
33 TraesCS3D01G223200 chr2A 97.368 38 1 0 479 516 12151100 12151137 1.150000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G223200 chr3D 304030838 304035781 4943 True 9130 9130 100.0000 1 4944 1 chr3D.!!$R1 4943
1 TraesCS3D01G223200 chr3A 430519901 430525400 5499 False 1449 3288 88.2745 4 4838 4 chr3A.!!$F1 4834
2 TraesCS3D01G223200 chr3B 417367843 417373467 5624 False 1254 2167 94.5420 712 4882 5 chr3B.!!$F1 4170
3 TraesCS3D01G223200 chr5A 238466481 238466982 501 True 411 411 81.5840 7 507 1 chr5A.!!$R1 500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
553 561 0.252284 AACCAGGGAGTCGTGATCCT 60.252 55.0 0.00 0.0 37.01 3.24 F
960 1918 0.325272 GTGTTCTTCAGTCCCCTCCC 59.675 60.0 0.00 0.0 0.00 4.30 F
1723 2697 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.0 5.23 0.0 44.66 3.13 F
1725 2699 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.0 5.23 0.0 44.66 1.40 F
1727 2701 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.0 44.66 2.12 F
3121 4118 0.390860 CCCTGGATAGTCTCGGCAAG 59.609 60.0 0.00 0.0 0.00 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1706 2680 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85 R
2783 3777 1.558233 ACTTTCTAGACTGGACCCGG 58.442 55.000 0.00 0.00 0.00 5.73 R
2809 3803 1.629861 TCTGGGCACATCATTCTCACA 59.370 47.619 0.00 0.00 0.00 3.58 R
3113 4110 2.483877 TGTCAGTTTATTGCTTGCCGAG 59.516 45.455 0.00 0.00 0.00 4.63 R
3668 4752 2.625790 GGAAACCAGTGGTGCACAATTA 59.374 45.455 17.56 0.00 35.34 1.40 R
4918 7577 0.043940 AGTCTCTGGGGCTCCAAGAT 59.956 55.000 6.84 1.05 43.51 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 0.818296 GGGCGAGTCGGATATGCTAT 59.182 55.000 15.52 0.00 0.00 2.97
67 71 2.661979 GCAGTTTCTTTTGCTACGACCG 60.662 50.000 0.00 0.00 37.35 4.79
87 91 2.331194 GTGTGGCATTTTTGCTGCTAG 58.669 47.619 0.00 0.00 39.60 3.42
146 150 4.402528 CCGGGGCAATGTGTCCGA 62.403 66.667 11.21 0.00 44.85 4.55
217 221 2.360350 CACCGGAGCTGCAACCAT 60.360 61.111 9.46 1.60 0.00 3.55
218 222 1.078497 CACCGGAGCTGCAACCATA 60.078 57.895 9.46 0.00 0.00 2.74
220 224 1.264749 ACCGGAGCTGCAACCATAGA 61.265 55.000 9.46 0.00 0.00 1.98
225 229 2.005451 GAGCTGCAACCATAGACACAG 58.995 52.381 1.02 0.00 0.00 3.66
227 231 1.742761 CTGCAACCATAGACACAGGG 58.257 55.000 0.00 0.00 0.00 4.45
239 243 0.828762 ACACAGGGTGTTGCATGCAT 60.829 50.000 23.37 1.46 45.08 3.96
243 247 1.216178 GGGTGTTGCATGCATGGAC 59.784 57.895 27.34 17.46 0.00 4.02
422 430 3.381908 GCACGAAGAGGAAGAAGGAGATA 59.618 47.826 0.00 0.00 0.00 1.98
435 443 6.043854 AGAAGGAGATAGGAAAGTCAACAC 57.956 41.667 0.00 0.00 0.00 3.32
436 444 5.544176 AGAAGGAGATAGGAAAGTCAACACA 59.456 40.000 0.00 0.00 0.00 3.72
466 474 1.522580 GTTGGAGCTCGCTGGATCC 60.523 63.158 7.83 4.20 41.65 3.36
472 480 3.209812 CTCGCTGGATCCGACGGA 61.210 66.667 20.85 20.85 35.55 4.69
525 533 3.357079 CTGGCGCCCAACACTGAC 61.357 66.667 26.77 0.00 30.80 3.51
526 534 4.947147 TGGCGCCCAACACTGACC 62.947 66.667 26.77 0.00 0.00 4.02
527 535 4.643387 GGCGCCCAACACTGACCT 62.643 66.667 18.11 0.00 0.00 3.85
528 536 2.594592 GCGCCCAACACTGACCTT 60.595 61.111 0.00 0.00 0.00 3.50
542 550 3.720002 ACTGACCTTTAGAAAACCAGGGA 59.280 43.478 0.00 0.00 0.00 4.20
544 552 3.720002 TGACCTTTAGAAAACCAGGGAGT 59.280 43.478 0.00 0.00 0.00 3.85
545 553 4.202430 TGACCTTTAGAAAACCAGGGAGTC 60.202 45.833 0.00 0.00 0.00 3.36
547 555 3.244457 CCTTTAGAAAACCAGGGAGTCGT 60.244 47.826 0.00 0.00 0.00 4.34
549 557 1.420430 AGAAAACCAGGGAGTCGTGA 58.580 50.000 0.00 0.00 0.00 4.35
550 558 1.978580 AGAAAACCAGGGAGTCGTGAT 59.021 47.619 0.00 0.00 0.00 3.06
551 559 2.028020 AGAAAACCAGGGAGTCGTGATC 60.028 50.000 0.00 0.00 0.00 2.92
552 560 0.613777 AAACCAGGGAGTCGTGATCC 59.386 55.000 0.00 0.00 35.99 3.36
553 561 0.252284 AACCAGGGAGTCGTGATCCT 60.252 55.000 0.00 0.00 37.01 3.24
554 562 0.684805 ACCAGGGAGTCGTGATCCTC 60.685 60.000 0.00 0.00 37.01 3.71
555 563 0.396417 CCAGGGAGTCGTGATCCTCT 60.396 60.000 0.00 0.00 37.01 3.69
556 564 1.028905 CAGGGAGTCGTGATCCTCTC 58.971 60.000 0.00 0.00 37.01 3.20
557 565 0.626382 AGGGAGTCGTGATCCTCTCA 59.374 55.000 0.25 0.00 37.01 3.27
600 609 8.504812 TTGGATCATCAAAAACATTCTCGATA 57.495 30.769 0.00 0.00 0.00 2.92
619 628 9.790389 TCTCGATACTTTCTTTTGTATTCTCTC 57.210 33.333 0.00 0.00 30.49 3.20
620 629 8.928270 TCGATACTTTCTTTTGTATTCTCTCC 57.072 34.615 0.00 0.00 30.49 3.71
622 631 9.372369 CGATACTTTCTTTTGTATTCTCTCCTT 57.628 33.333 0.00 0.00 30.49 3.36
672 681 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
674 683 6.250711 TGGACTACCACATACGGATGTATAT 58.749 40.000 14.23 4.37 44.82 0.86
675 684 7.404481 TGGACTACCACATACGGATGTATATA 58.596 38.462 14.23 5.36 44.82 0.86
676 685 7.555195 TGGACTACCACATACGGATGTATATAG 59.445 40.741 14.23 16.35 44.82 1.31
677 686 7.772292 GGACTACCACATACGGATGTATATAGA 59.228 40.741 22.62 5.04 44.82 1.98
679 688 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
680 689 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
682 691 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
782 1722 6.318648 TCCATCAGATTAAAACAAGAATCGGG 59.681 38.462 0.00 0.00 37.19 5.14
783 1723 6.460123 CCATCAGATTAAAACAAGAATCGGGG 60.460 42.308 0.00 0.00 37.19 5.73
960 1918 0.325272 GTGTTCTTCAGTCCCCTCCC 59.675 60.000 0.00 0.00 0.00 4.30
964 1922 1.690985 CTTCAGTCCCCTCCCCTCC 60.691 68.421 0.00 0.00 0.00 4.30
972 1930 1.304936 CCCCTCCCCTCCTTCTCCTA 61.305 65.000 0.00 0.00 0.00 2.94
1061 2019 1.560505 GAGAACCCAATGCACCCAAT 58.439 50.000 0.00 0.00 0.00 3.16
1078 2036 2.302199 AATCGCAGAGCCGCTCATCA 62.302 55.000 22.29 3.67 43.63 3.07
1127 2085 3.282374 ATCAAAGGCCCCCGGTGAC 62.282 63.158 0.00 0.00 0.00 3.67
1246 2207 1.472480 GTGCGTTGGCTGGTCATATTT 59.528 47.619 0.00 0.00 40.82 1.40
1339 2302 7.175104 AGTATGTCTTGAAGCCCAAAGAATTA 58.825 34.615 0.00 0.00 33.76 1.40
1340 2303 7.836183 AGTATGTCTTGAAGCCCAAAGAATTAT 59.164 33.333 0.00 0.00 33.76 1.28
1349 2312 7.450014 TGAAGCCCAAAGAATTATGTGTCTTTA 59.550 33.333 0.00 0.00 41.12 1.85
1405 2368 0.827089 CTGTGGTGGCAATTGGTCCA 60.827 55.000 7.72 4.05 0.00 4.02
1407 2370 0.532115 GTGGTGGCAATTGGTCCATC 59.468 55.000 7.72 7.93 34.47 3.51
1418 2381 0.955428 TGGTCCATCGCAGCAAGAAC 60.955 55.000 0.00 0.00 0.00 3.01
1436 2399 3.888930 AGAACCCGAAGCTTTTTGAATCA 59.111 39.130 0.00 0.00 0.00 2.57
1493 2463 7.040201 GCCATCTGGTTGATACATACATGAATT 60.040 37.037 0.00 0.00 37.57 2.17
1660 2634 3.864789 ATCCCAGTAATTACCTGCCTG 57.135 47.619 12.05 3.66 0.00 4.85
1671 2645 2.124403 CTGCCTGGGCTAGCCTTG 60.124 66.667 32.18 23.21 42.51 3.61
1678 2652 1.141657 CTGGGCTAGCCTTGCAGAATA 59.858 52.381 32.18 7.67 36.10 1.75
1706 2680 6.929049 GCAGTGTACATGGAGCTAAACATATA 59.071 38.462 0.00 0.00 0.00 0.86
1707 2681 7.095607 GCAGTGTACATGGAGCTAAACATATAC 60.096 40.741 0.00 6.90 29.90 1.47
1708 2682 8.144478 CAGTGTACATGGAGCTAAACATATACT 58.856 37.037 0.00 4.00 30.44 2.12
1709 2683 8.361139 AGTGTACATGGAGCTAAACATATACTC 58.639 37.037 0.00 9.87 30.44 2.59
1710 2684 7.599245 GTGTACATGGAGCTAAACATATACTCC 59.401 40.741 0.00 0.00 45.87 3.85
1711 2685 6.115448 ACATGGAGCTAAACATATACTCCC 57.885 41.667 4.98 0.00 45.22 4.30
1712 2686 5.846714 ACATGGAGCTAAACATATACTCCCT 59.153 40.000 4.98 0.00 45.22 4.20
1713 2687 6.014156 ACATGGAGCTAAACATATACTCCCTC 60.014 42.308 4.98 0.00 45.22 4.30
1714 2688 4.838986 TGGAGCTAAACATATACTCCCTCC 59.161 45.833 4.98 0.00 45.22 4.30
1715 2689 4.082136 GGAGCTAAACATATACTCCCTCCG 60.082 50.000 0.00 0.00 40.91 4.63
1716 2690 4.481072 AGCTAAACATATACTCCCTCCGT 58.519 43.478 0.00 0.00 0.00 4.69
1717 2691 4.523558 AGCTAAACATATACTCCCTCCGTC 59.476 45.833 0.00 0.00 0.00 4.79
1718 2692 4.321824 GCTAAACATATACTCCCTCCGTCC 60.322 50.000 0.00 0.00 0.00 4.79
1719 2693 1.906990 ACATATACTCCCTCCGTCCG 58.093 55.000 0.00 0.00 0.00 4.79
1720 2694 1.174783 CATATACTCCCTCCGTCCGG 58.825 60.000 0.00 0.00 0.00 5.14
1721 2695 1.070604 ATATACTCCCTCCGTCCGGA 58.929 55.000 0.00 0.00 42.90 5.14
1722 2696 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
1723 2697 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
1724 2698 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
1725 2699 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
1726 2700 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
1727 2701 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
1728 2702 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
1729 2703 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
1730 2704 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
1731 2705 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
1732 2706 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
1733 2707 1.997606 CCGTCCGGAAATACTTGTCAC 59.002 52.381 5.23 0.00 37.50 3.67
1734 2708 1.997606 CGTCCGGAAATACTTGTCACC 59.002 52.381 5.23 0.00 0.00 4.02
1735 2709 2.610976 CGTCCGGAAATACTTGTCACCA 60.611 50.000 5.23 0.00 0.00 4.17
1736 2710 3.404899 GTCCGGAAATACTTGTCACCAA 58.595 45.455 5.23 0.00 0.00 3.67
1737 2711 3.816523 GTCCGGAAATACTTGTCACCAAA 59.183 43.478 5.23 0.00 0.00 3.28
1738 2712 4.276431 GTCCGGAAATACTTGTCACCAAAA 59.724 41.667 5.23 0.00 0.00 2.44
1739 2713 5.048294 GTCCGGAAATACTTGTCACCAAAAT 60.048 40.000 5.23 0.00 0.00 1.82
1740 2714 6.149807 GTCCGGAAATACTTGTCACCAAAATA 59.850 38.462 5.23 0.00 0.00 1.40
1741 2715 6.715718 TCCGGAAATACTTGTCACCAAAATAA 59.284 34.615 0.00 0.00 0.00 1.40
1742 2716 7.230913 TCCGGAAATACTTGTCACCAAAATAAA 59.769 33.333 0.00 0.00 0.00 1.40
1743 2717 8.032451 CCGGAAATACTTGTCACCAAAATAAAT 58.968 33.333 0.00 0.00 0.00 1.40
1751 2725 8.154203 ACTTGTCACCAAAATAAATAAAAGGGG 58.846 33.333 0.00 0.00 0.00 4.79
1752 2726 7.857404 TGTCACCAAAATAAATAAAAGGGGA 57.143 32.000 0.00 0.00 0.00 4.81
1753 2727 8.442660 TGTCACCAAAATAAATAAAAGGGGAT 57.557 30.769 0.00 0.00 28.65 3.85
1754 2728 8.317679 TGTCACCAAAATAAATAAAAGGGGATG 58.682 33.333 0.00 0.00 28.65 3.51
1755 2729 8.318412 GTCACCAAAATAAATAAAAGGGGATGT 58.682 33.333 0.00 0.00 28.65 3.06
1756 2730 9.548631 TCACCAAAATAAATAAAAGGGGATGTA 57.451 29.630 0.00 0.00 0.00 2.29
1765 2739 7.613551 AATAAAAGGGGATGTATCTAGACGT 57.386 36.000 0.00 0.00 0.00 4.34
1766 2740 8.716674 AATAAAAGGGGATGTATCTAGACGTA 57.283 34.615 0.00 0.00 0.00 3.57
1767 2741 8.896722 ATAAAAGGGGATGTATCTAGACGTAT 57.103 34.615 0.00 0.00 0.00 3.06
1768 2742 7.613551 AAAAGGGGATGTATCTAGACGTATT 57.386 36.000 0.00 0.00 0.00 1.89
1769 2743 7.613551 AAAGGGGATGTATCTAGACGTATTT 57.386 36.000 0.00 0.00 0.00 1.40
1770 2744 7.613551 AAGGGGATGTATCTAGACGTATTTT 57.386 36.000 0.00 0.00 0.00 1.82
1771 2745 8.716674 AAGGGGATGTATCTAGACGTATTTTA 57.283 34.615 0.00 0.00 0.00 1.52
1772 2746 8.350852 AGGGGATGTATCTAGACGTATTTTAG 57.649 38.462 0.00 0.00 0.00 1.85
1773 2747 7.949006 AGGGGATGTATCTAGACGTATTTTAGT 59.051 37.037 0.00 0.00 0.00 2.24
1774 2748 8.583296 GGGGATGTATCTAGACGTATTTTAGTT 58.417 37.037 0.00 0.00 0.00 2.24
1775 2749 9.623350 GGGATGTATCTAGACGTATTTTAGTTC 57.377 37.037 0.00 0.00 0.00 3.01
1807 2781 8.814931 ACATCCTTTTTATCCATTTTGATGACA 58.185 29.630 0.00 0.00 33.22 3.58
1808 2782 9.656040 CATCCTTTTTATCCATTTTGATGACAA 57.344 29.630 0.00 0.00 31.12 3.18
1809 2783 9.880157 ATCCTTTTTATCCATTTTGATGACAAG 57.120 29.630 0.00 0.00 37.32 3.16
1810 2784 8.869109 TCCTTTTTATCCATTTTGATGACAAGT 58.131 29.630 0.00 0.00 37.32 3.16
1817 2791 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
1818 2792 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
1819 2793 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
1820 2794 7.975616 CCATTTTGATGACAAGTATTTTCGGAT 59.024 33.333 0.00 0.00 37.32 4.18
1821 2795 8.800972 CATTTTGATGACAAGTATTTTCGGATG 58.199 33.333 0.00 0.00 37.32 3.51
1822 2796 6.435430 TTGATGACAAGTATTTTCGGATGG 57.565 37.500 0.00 0.00 0.00 3.51
1823 2797 5.739959 TGATGACAAGTATTTTCGGATGGA 58.260 37.500 0.00 0.00 0.00 3.41
1824 2798 5.817296 TGATGACAAGTATTTTCGGATGGAG 59.183 40.000 0.00 0.00 0.00 3.86
1825 2799 4.513442 TGACAAGTATTTTCGGATGGAGG 58.487 43.478 0.00 0.00 0.00 4.30
1826 2800 4.224147 TGACAAGTATTTTCGGATGGAGGA 59.776 41.667 0.00 0.00 0.00 3.71
1827 2801 5.174037 ACAAGTATTTTCGGATGGAGGAA 57.826 39.130 0.00 0.00 0.00 3.36
1828 2802 5.755849 ACAAGTATTTTCGGATGGAGGAAT 58.244 37.500 0.00 0.00 0.00 3.01
1829 2803 6.895782 ACAAGTATTTTCGGATGGAGGAATA 58.104 36.000 0.00 0.00 0.00 1.75
1856 2831 9.125026 ACATAAACCAGGATGATAAGAAACATC 57.875 33.333 0.00 0.00 39.69 3.06
1899 2876 7.751047 TTTAGTTGCTAGAAATACTGTAGCG 57.249 36.000 0.00 0.00 34.10 4.26
1977 2954 2.676342 CACTTGCCGGTACCTATGTTTC 59.324 50.000 10.90 0.00 0.00 2.78
2047 3024 0.529378 CCTCTGGGCAATTGAGCAAC 59.471 55.000 10.34 0.00 35.83 4.17
2096 3073 5.684626 GCTTCTGATATACATTTGTGCTTGC 59.315 40.000 0.00 0.00 0.00 4.01
2106 3083 1.034356 TTGTGCTTGCTGCTGACAAT 58.966 45.000 0.00 0.00 43.37 2.71
2224 3201 4.142600 GCCTTCACTGTTCGAAATATTGCT 60.143 41.667 0.00 0.00 0.00 3.91
2476 3469 8.258708 AGTGTACTTCTATTCAGGAATACAACC 58.741 37.037 0.00 0.00 32.50 3.77
2698 3691 2.573462 CCCCTCTCCATGGGTATATGTG 59.427 54.545 13.02 0.00 43.09 3.21
2783 3777 6.639671 TGTTGTTTAACATTTGTGTTCTGC 57.360 33.333 0.00 0.00 41.66 4.26
2784 3778 5.578727 TGTTGTTTAACATTTGTGTTCTGCC 59.421 36.000 0.00 0.00 41.66 4.85
2798 3792 1.379977 CTGCCGGGTCCAGTCTAGA 60.380 63.158 2.18 0.00 0.00 2.43
2802 3796 1.558233 CCGGGTCCAGTCTAGAAAGT 58.442 55.000 0.00 0.00 0.00 2.66
2809 3803 5.454897 GGGTCCAGTCTAGAAAGTTGAAACT 60.455 44.000 0.00 0.00 42.04 2.66
2814 3808 6.201806 CCAGTCTAGAAAGTTGAAACTGTGAG 59.798 42.308 0.00 0.00 39.66 3.51
2816 3810 7.492669 CAGTCTAGAAAGTTGAAACTGTGAGAA 59.507 37.037 0.00 0.00 39.66 2.87
2825 3819 3.503363 TGAAACTGTGAGAATGATGTGCC 59.497 43.478 0.00 0.00 0.00 5.01
2835 3829 3.265221 AGAATGATGTGCCCAGAGAAGAA 59.735 43.478 0.00 0.00 0.00 2.52
3121 4118 0.390860 CCCTGGATAGTCTCGGCAAG 59.609 60.000 0.00 0.00 0.00 4.01
3183 4263 8.874744 ATGGAAATTGGTATATTCTCCATCAG 57.125 34.615 0.00 0.00 34.24 2.90
3355 4438 8.792633 CAGAAAAAGAAACATATACACAAGGGA 58.207 33.333 0.00 0.00 0.00 4.20
3437 4520 4.022242 TCAAACGAGTCTTAAGAGGAGTGG 60.022 45.833 5.12 3.30 0.00 4.00
3438 4521 2.448453 ACGAGTCTTAAGAGGAGTGGG 58.552 52.381 5.12 0.00 0.00 4.61
3467 4550 6.500684 ACATGGCTTCAGTATTAGTTTGTG 57.499 37.500 0.00 0.00 0.00 3.33
3474 4557 6.401581 GCTTCAGTATTAGTTTGTGCTCTCAC 60.402 42.308 0.00 0.00 43.40 3.51
3503 4587 7.754069 TTTTATTGAGCTCACTGTTTGTTTG 57.246 32.000 18.03 0.00 0.00 2.93
3641 4725 9.968870 AAAGGTACGATTGCTTAAAACATTTTA 57.031 25.926 0.00 0.00 0.00 1.52
3668 4752 3.350833 CTTTTGAGCAGAATAGTGGGCT 58.649 45.455 0.00 0.00 39.75 5.19
3765 4852 6.594788 AGTTAACTAACGTTCCATGGTAGA 57.405 37.500 12.58 0.00 40.96 2.59
3820 4907 2.281484 GTGCAGGAGGCCGTCAAA 60.281 61.111 0.00 0.00 43.89 2.69
3821 4908 1.675641 GTGCAGGAGGCCGTCAAAT 60.676 57.895 0.00 0.00 43.89 2.32
3915 5002 0.392461 GCCCGCTATGACTTTGTCCA 60.392 55.000 0.00 0.00 0.00 4.02
3968 5055 5.934625 AGTCAAGTAGTGCAGAAATGGTTAG 59.065 40.000 0.00 0.00 0.00 2.34
4042 5130 0.392336 GTTGCTGGGTTTGCATTCCA 59.608 50.000 9.38 6.53 40.34 3.53
4475 5573 0.450983 GTCTGCAAATGAGCTCAGCC 59.549 55.000 22.96 10.23 34.99 4.85
4476 5574 0.037160 TCTGCAAATGAGCTCAGCCA 59.963 50.000 22.96 14.03 34.99 4.75
4477 5575 0.885879 CTGCAAATGAGCTCAGCCAA 59.114 50.000 22.96 4.59 34.99 4.52
4478 5576 1.271379 CTGCAAATGAGCTCAGCCAAA 59.729 47.619 22.96 6.78 34.99 3.28
4479 5577 1.897133 TGCAAATGAGCTCAGCCAAAT 59.103 42.857 22.96 0.23 34.99 2.32
4480 5578 2.094390 TGCAAATGAGCTCAGCCAAATC 60.094 45.455 22.96 7.69 34.99 2.17
4481 5579 2.094390 GCAAATGAGCTCAGCCAAATCA 60.094 45.455 22.96 0.00 0.00 2.57
4482 5580 3.430374 GCAAATGAGCTCAGCCAAATCAT 60.430 43.478 22.96 0.00 32.11 2.45
4483 5581 4.360563 CAAATGAGCTCAGCCAAATCATC 58.639 43.478 22.96 0.00 30.51 2.92
4484 5582 3.579534 ATGAGCTCAGCCAAATCATCT 57.420 42.857 22.96 0.00 0.00 2.90
4485 5583 2.640184 TGAGCTCAGCCAAATCATCTG 58.360 47.619 13.74 0.00 0.00 2.90
4486 5584 2.026542 TGAGCTCAGCCAAATCATCTGT 60.027 45.455 13.74 0.00 0.00 3.41
4487 5585 3.015327 GAGCTCAGCCAAATCATCTGTT 58.985 45.455 9.40 0.00 0.00 3.16
4488 5586 2.753452 AGCTCAGCCAAATCATCTGTTG 59.247 45.455 0.00 0.00 0.00 3.33
4489 5587 2.734492 GCTCAGCCAAATCATCTGTTGC 60.734 50.000 0.00 0.00 0.00 4.17
4490 5588 2.490509 CTCAGCCAAATCATCTGTTGCA 59.509 45.455 0.00 0.00 0.00 4.08
4491 5589 2.892215 TCAGCCAAATCATCTGTTGCAA 59.108 40.909 0.00 0.00 0.00 4.08
4492 5590 3.321396 TCAGCCAAATCATCTGTTGCAAA 59.679 39.130 0.00 0.00 0.00 3.68
4493 5591 4.020928 TCAGCCAAATCATCTGTTGCAAAT 60.021 37.500 0.00 0.00 0.00 2.32
4494 5592 4.092821 CAGCCAAATCATCTGTTGCAAATG 59.907 41.667 0.00 1.39 0.00 2.32
4495 5593 4.020928 AGCCAAATCATCTGTTGCAAATGA 60.021 37.500 13.26 13.26 34.17 2.57
4496 5594 4.691685 GCCAAATCATCTGTTGCAAATGAA 59.308 37.500 14.53 1.69 33.44 2.57
4497 5595 5.390145 GCCAAATCATCTGTTGCAAATGAAC 60.390 40.000 14.53 0.00 33.44 3.18
4498 5596 5.929992 CCAAATCATCTGTTGCAAATGAACT 59.070 36.000 14.53 4.65 33.44 3.01
4499 5597 6.090358 CCAAATCATCTGTTGCAAATGAACTC 59.910 38.462 14.53 0.00 33.44 3.01
4500 5598 5.970317 ATCATCTGTTGCAAATGAACTCA 57.030 34.783 14.53 0.56 33.44 3.41
4501 5599 5.366829 TCATCTGTTGCAAATGAACTCAG 57.633 39.130 9.36 7.13 0.00 3.35
4502 5600 3.631145 TCTGTTGCAAATGAACTCAGC 57.369 42.857 0.00 0.00 0.00 4.26
4525 5623 3.377253 AATCATCTGTTGCACCCATCT 57.623 42.857 0.00 0.00 0.00 2.90
4551 5649 6.631971 TGTCAGAACATCAATTTACAAGCA 57.368 33.333 0.00 0.00 0.00 3.91
4575 5673 5.602561 AGTTCTTAAGGAGGTTTTGGCAAAT 59.397 36.000 14.29 0.00 0.00 2.32
4576 5674 6.099701 AGTTCTTAAGGAGGTTTTGGCAAATT 59.900 34.615 14.29 6.49 0.00 1.82
4577 5675 7.289084 AGTTCTTAAGGAGGTTTTGGCAAATTA 59.711 33.333 14.29 5.48 0.00 1.40
4578 5676 7.227049 TCTTAAGGAGGTTTTGGCAAATTAG 57.773 36.000 14.29 0.60 0.00 1.73
4677 7336 1.067295 AGGGCAGACTGATGAACCAA 58.933 50.000 6.65 0.00 0.00 3.67
4710 7369 0.317160 CAGTGGTGCGTTCTGTCCTA 59.683 55.000 0.00 0.00 0.00 2.94
4882 7541 2.124445 GGTGGAATACGGTGGGCC 60.124 66.667 0.00 0.00 0.00 5.80
4883 7542 2.676265 GGTGGAATACGGTGGGCCT 61.676 63.158 4.53 0.00 0.00 5.19
4884 7543 1.153229 GTGGAATACGGTGGGCCTC 60.153 63.158 4.53 0.00 0.00 4.70
4885 7544 1.613928 TGGAATACGGTGGGCCTCA 60.614 57.895 4.53 0.00 0.00 3.86
4886 7545 1.153229 GGAATACGGTGGGCCTCAC 60.153 63.158 14.11 14.11 45.34 3.51
4887 7546 1.520787 GAATACGGTGGGCCTCACG 60.521 63.158 15.48 9.36 46.96 4.35
4888 7547 3.675619 AATACGGTGGGCCTCACGC 62.676 63.158 15.48 9.37 46.96 5.34
4898 7557 2.360350 CCTCACGCTGGCATGGTT 60.360 61.111 0.00 0.00 0.00 3.67
4899 7558 2.693762 CCTCACGCTGGCATGGTTG 61.694 63.158 0.00 0.00 0.00 3.77
4909 7568 3.577229 CATGGTTGCAGCACGCTA 58.423 55.556 2.05 0.00 43.06 4.26
4910 7569 1.875262 CATGGTTGCAGCACGCTAA 59.125 52.632 2.05 0.00 43.06 3.09
4911 7570 0.240678 CATGGTTGCAGCACGCTAAA 59.759 50.000 2.05 0.00 43.06 1.85
4912 7571 0.240945 ATGGTTGCAGCACGCTAAAC 59.759 50.000 2.05 7.80 43.06 2.01
4913 7572 1.081442 GGTTGCAGCACGCTAAACC 60.081 57.895 15.95 15.95 43.06 3.27
4914 7573 1.081442 GTTGCAGCACGCTAAACCC 60.081 57.895 0.00 0.00 43.06 4.11
4915 7574 1.228124 TTGCAGCACGCTAAACCCT 60.228 52.632 0.00 0.00 43.06 4.34
4916 7575 1.514678 TTGCAGCACGCTAAACCCTG 61.515 55.000 0.00 0.00 43.06 4.45
4917 7576 2.870372 CAGCACGCTAAACCCTGC 59.130 61.111 0.00 0.00 0.00 4.85
4918 7577 1.965930 CAGCACGCTAAACCCTGCA 60.966 57.895 0.00 0.00 31.71 4.41
4919 7578 1.002134 AGCACGCTAAACCCTGCAT 60.002 52.632 0.00 0.00 31.71 3.96
4920 7579 1.026718 AGCACGCTAAACCCTGCATC 61.027 55.000 0.00 0.00 31.71 3.91
4921 7580 1.026718 GCACGCTAAACCCTGCATCT 61.027 55.000 0.00 0.00 0.00 2.90
4922 7581 1.453155 CACGCTAAACCCTGCATCTT 58.547 50.000 0.00 0.00 0.00 2.40
4923 7582 1.131126 CACGCTAAACCCTGCATCTTG 59.869 52.381 0.00 0.00 0.00 3.02
4924 7583 0.734889 CGCTAAACCCTGCATCTTGG 59.265 55.000 0.00 0.00 0.00 3.61
4925 7584 1.678728 CGCTAAACCCTGCATCTTGGA 60.679 52.381 0.00 0.00 0.00 3.53
4926 7585 2.019984 GCTAAACCCTGCATCTTGGAG 58.980 52.381 0.00 0.00 35.43 3.86
4927 7586 2.019984 CTAAACCCTGCATCTTGGAGC 58.980 52.381 0.00 0.00 34.22 4.70
4928 7587 0.613012 AAACCCTGCATCTTGGAGCC 60.613 55.000 0.00 0.00 34.22 4.70
4929 7588 2.123982 CCCTGCATCTTGGAGCCC 60.124 66.667 0.00 0.00 34.22 5.19
4930 7589 2.123982 CCTGCATCTTGGAGCCCC 60.124 66.667 0.00 0.00 34.22 5.80
4931 7590 2.679092 CTGCATCTTGGAGCCCCA 59.321 61.111 0.00 0.00 41.64 4.96
4932 7591 1.453379 CTGCATCTTGGAGCCCCAG 60.453 63.158 0.00 0.00 44.60 4.45
4933 7592 1.918467 CTGCATCTTGGAGCCCCAGA 61.918 60.000 0.00 0.00 44.60 3.86
4934 7593 1.153005 GCATCTTGGAGCCCCAGAG 60.153 63.158 0.00 0.00 44.60 3.35
4935 7594 1.630126 GCATCTTGGAGCCCCAGAGA 61.630 60.000 2.55 2.55 44.60 3.10
4936 7595 0.179936 CATCTTGGAGCCCCAGAGAC 59.820 60.000 2.18 0.00 44.60 3.36
4937 7596 0.043940 ATCTTGGAGCCCCAGAGACT 59.956 55.000 2.18 0.00 44.60 3.24
4938 7597 0.616111 TCTTGGAGCCCCAGAGACTC 60.616 60.000 0.00 0.00 44.60 3.36
4940 7599 2.366570 GGAGCCCCAGAGACTCCT 59.633 66.667 0.00 0.00 45.44 3.69
4941 7600 1.760480 GGAGCCCCAGAGACTCCTC 60.760 68.421 0.00 0.00 45.44 3.71
4943 7602 0.755327 GAGCCCCAGAGACTCCTCTC 60.755 65.000 0.00 0.00 46.38 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 53 2.286025 ACACGGTCGTAGCAAAAGAAAC 59.714 45.455 0.00 0.00 0.00 2.78
67 71 2.288395 ACTAGCAGCAAAAATGCCACAC 60.288 45.455 0.00 0.00 44.97 3.82
87 91 1.566298 ATCTCTCCTTGGGGTGCCAC 61.566 60.000 0.00 0.00 0.00 5.01
137 141 0.457853 CGATGGTTCGTCGGACACAT 60.458 55.000 5.91 6.67 38.96 3.21
170 174 2.037136 AGCTCCAATGCACGACAGC 61.037 57.895 0.00 0.00 34.99 4.40
182 186 4.742201 GGAACGCTCGCAGCTCCA 62.742 66.667 9.86 0.00 39.60 3.86
217 221 1.881925 GCATGCAACACCCTGTGTCTA 60.882 52.381 14.21 0.00 46.79 2.59
218 222 1.174712 GCATGCAACACCCTGTGTCT 61.175 55.000 14.21 0.00 46.79 3.41
225 229 1.216178 GTCCATGCATGCAACACCC 59.784 57.895 26.68 8.19 0.00 4.61
227 231 1.802715 GCGTCCATGCATGCAACAC 60.803 57.895 26.68 19.08 34.15 3.32
236 240 2.395690 CGTTTCTCGCGTCCATGC 59.604 61.111 5.77 0.00 0.00 4.06
319 323 1.081092 CCTGGAACTCCTCCCTCCA 59.919 63.158 0.00 0.00 44.69 3.86
363 367 1.134280 CCCTGTCGCTTGGATCTCATT 60.134 52.381 0.00 0.00 0.00 2.57
368 372 2.514824 GCCCCTGTCGCTTGGATC 60.515 66.667 0.00 0.00 0.00 3.36
422 430 4.466370 TCCGATCTATGTGTTGACTTTCCT 59.534 41.667 0.00 0.00 0.00 3.36
435 443 1.603172 GCTCCAACCGTCCGATCTATG 60.603 57.143 0.00 0.00 0.00 2.23
436 444 0.674534 GCTCCAACCGTCCGATCTAT 59.325 55.000 0.00 0.00 0.00 1.98
509 517 4.947147 GGTCAGTGTTGGGCGCCA 62.947 66.667 30.85 12.04 0.00 5.69
518 526 4.461198 CCTGGTTTTCTAAAGGTCAGTGT 58.539 43.478 0.00 0.00 0.00 3.55
522 530 3.720002 ACTCCCTGGTTTTCTAAAGGTCA 59.280 43.478 0.00 0.00 0.00 4.02
523 531 4.325119 GACTCCCTGGTTTTCTAAAGGTC 58.675 47.826 0.00 0.00 0.00 3.85
524 532 3.244457 CGACTCCCTGGTTTTCTAAAGGT 60.244 47.826 0.00 0.00 0.00 3.50
525 533 3.244457 ACGACTCCCTGGTTTTCTAAAGG 60.244 47.826 0.00 0.00 0.00 3.11
526 534 3.746492 CACGACTCCCTGGTTTTCTAAAG 59.254 47.826 0.00 0.00 0.00 1.85
527 535 3.388676 TCACGACTCCCTGGTTTTCTAAA 59.611 43.478 0.00 0.00 0.00 1.85
528 536 2.967201 TCACGACTCCCTGGTTTTCTAA 59.033 45.455 0.00 0.00 0.00 2.10
559 567 9.519191 TGATGATCCAATTGAAAACTCTAAAGA 57.481 29.630 7.12 0.00 0.00 2.52
571 579 7.756272 CGAGAATGTTTTTGATGATCCAATTGA 59.244 33.333 7.12 0.00 0.00 2.57
634 643 9.974980 GTGGTAGTCCATTTGAAATCTTAAAAA 57.025 29.630 0.00 0.00 46.20 1.94
635 644 9.137459 TGTGGTAGTCCATTTGAAATCTTAAAA 57.863 29.630 0.00 0.00 46.20 1.52
636 645 8.698973 TGTGGTAGTCCATTTGAAATCTTAAA 57.301 30.769 0.00 0.00 46.20 1.52
638 647 9.391006 GTATGTGGTAGTCCATTTGAAATCTTA 57.609 33.333 0.00 0.00 46.20 2.10
641 650 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
642 651 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
643 652 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
644 653 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
645 654 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
646 655 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
647 656 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
648 657 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
649 658 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
650 659 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
652 661 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
653 662 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
654 663 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
656 665 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
705 714 8.943002 GGTTCGGATAAATTTCAAGACTCTAAA 58.057 33.333 0.00 0.00 0.00 1.85
706 715 7.551617 GGGTTCGGATAAATTTCAAGACTCTAA 59.448 37.037 0.00 0.00 0.00 2.10
707 716 7.046033 GGGTTCGGATAAATTTCAAGACTCTA 58.954 38.462 0.00 0.00 0.00 2.43
708 717 5.880887 GGGTTCGGATAAATTTCAAGACTCT 59.119 40.000 0.00 0.00 0.00 3.24
709 718 5.220605 CGGGTTCGGATAAATTTCAAGACTC 60.221 44.000 0.00 0.00 0.00 3.36
710 719 4.634443 CGGGTTCGGATAAATTTCAAGACT 59.366 41.667 0.00 0.00 0.00 3.24
771 1711 1.141053 GATGCCTACCCCGATTCTTGT 59.859 52.381 0.00 0.00 0.00 3.16
782 1722 4.569564 CGTTTTTAGTACCAGATGCCTACC 59.430 45.833 0.00 0.00 0.00 3.18
783 1723 5.413499 TCGTTTTTAGTACCAGATGCCTAC 58.587 41.667 0.00 0.00 0.00 3.18
897 1854 1.078848 AGCTCGCTGCCTAAACCAG 60.079 57.895 0.00 0.00 44.23 4.00
898 1855 1.375908 CAGCTCGCTGCCTAAACCA 60.376 57.895 5.91 0.00 44.23 3.67
899 1856 1.079127 TCAGCTCGCTGCCTAAACC 60.079 57.895 13.83 0.00 43.31 3.27
900 1857 1.687494 CGTCAGCTCGCTGCCTAAAC 61.687 60.000 13.83 5.92 43.31 2.01
901 1858 1.446099 CGTCAGCTCGCTGCCTAAA 60.446 57.895 13.83 0.00 43.31 1.85
902 1859 2.181777 CGTCAGCTCGCTGCCTAA 59.818 61.111 13.83 0.00 43.31 2.69
903 1860 3.826754 CCGTCAGCTCGCTGCCTA 61.827 66.667 13.83 0.00 43.31 3.93
910 1867 3.815569 GAGATCCGCCGTCAGCTCG 62.816 68.421 0.00 0.00 40.39 5.03
911 1868 2.026879 GAGATCCGCCGTCAGCTC 59.973 66.667 0.00 0.00 40.39 4.09
960 1918 5.009811 CGTGGTTTACTATAGGAGAAGGAGG 59.990 48.000 4.43 0.00 0.00 4.30
964 1922 4.288531 CGCGTGGTTTACTATAGGAGAAG 58.711 47.826 4.43 0.00 0.00 2.85
972 1930 1.202222 CGTCTCCGCGTGGTTTACTAT 60.202 52.381 16.01 0.00 36.30 2.12
1061 2019 2.895940 CTTGATGAGCGGCTCTGCGA 62.896 60.000 28.42 18.51 40.67 5.10
1078 2036 1.074775 TGTGATTGGGCTTCCGCTT 59.925 52.632 0.00 0.00 36.09 4.68
1127 2085 0.962356 GACCTTGTGAGCATGGGTGG 60.962 60.000 0.00 0.00 42.37 4.61
1246 2207 1.164411 CAGCGTTCATACCCTGCAAA 58.836 50.000 0.00 0.00 0.00 3.68
1339 2302 8.587608 ACAAATCCATGTTGAATAAAGACACAT 58.412 29.630 1.85 0.00 0.00 3.21
1340 2303 7.866898 CACAAATCCATGTTGAATAAAGACACA 59.133 33.333 1.85 0.00 0.00 3.72
1349 2312 5.471556 TTCAGCACAAATCCATGTTGAAT 57.528 34.783 1.85 0.00 39.98 2.57
1355 2318 6.978343 AATTCAATTCAGCACAAATCCATG 57.022 33.333 0.00 0.00 0.00 3.66
1405 2368 1.003839 TTCGGGTTCTTGCTGCGAT 60.004 52.632 0.00 0.00 0.00 4.58
1407 2370 2.863153 CTTCGGGTTCTTGCTGCG 59.137 61.111 0.00 0.00 0.00 5.18
1418 2381 3.923017 AGTGATTCAAAAAGCTTCGGG 57.077 42.857 0.00 0.00 0.00 5.14
1521 2495 2.871453 TGTAGAGTACACTCAGTGGCA 58.129 47.619 10.28 0.00 45.21 4.92
1660 2634 1.598882 GTATTCTGCAAGGCTAGCCC 58.401 55.000 30.42 15.68 36.58 5.19
1671 2645 2.004583 TGTACACTGCCGTATTCTGC 57.995 50.000 0.00 0.00 0.00 4.26
1678 2652 1.079127 GCTCCATGTACACTGCCGT 60.079 57.895 0.00 0.00 0.00 5.68
1706 2680 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
1707 2681 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
1708 2682 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
1709 2683 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
1710 2684 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
1711 2685 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
1712 2686 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
1713 2687 1.997606 GTGACAAGTATTTCCGGACGG 59.002 52.381 1.83 3.96 0.00 4.79
1714 2688 1.997606 GGTGACAAGTATTTCCGGACG 59.002 52.381 1.83 0.00 0.00 4.79
1715 2689 3.048337 TGGTGACAAGTATTTCCGGAC 57.952 47.619 1.83 0.00 37.44 4.79
1728 2702 7.857404 TCCCCTTTTATTTATTTTGGTGACA 57.143 32.000 0.00 0.00 39.83 3.58
1729 2703 8.318412 ACATCCCCTTTTATTTATTTTGGTGAC 58.682 33.333 0.00 0.00 0.00 3.67
1730 2704 8.442660 ACATCCCCTTTTATTTATTTTGGTGA 57.557 30.769 0.00 0.00 0.00 4.02
1739 2713 9.151177 ACGTCTAGATACATCCCCTTTTATTTA 57.849 33.333 0.00 0.00 0.00 1.40
1740 2714 8.030913 ACGTCTAGATACATCCCCTTTTATTT 57.969 34.615 0.00 0.00 0.00 1.40
1741 2715 7.613551 ACGTCTAGATACATCCCCTTTTATT 57.386 36.000 0.00 0.00 0.00 1.40
1742 2716 8.896722 ATACGTCTAGATACATCCCCTTTTAT 57.103 34.615 0.00 0.00 0.00 1.40
1743 2717 8.716674 AATACGTCTAGATACATCCCCTTTTA 57.283 34.615 0.00 0.00 0.00 1.52
1744 2718 7.613551 AATACGTCTAGATACATCCCCTTTT 57.386 36.000 0.00 0.00 0.00 2.27
1745 2719 7.613551 AAATACGTCTAGATACATCCCCTTT 57.386 36.000 0.00 0.00 0.00 3.11
1746 2720 7.613551 AAAATACGTCTAGATACATCCCCTT 57.386 36.000 0.00 0.00 0.00 3.95
1747 2721 7.949006 ACTAAAATACGTCTAGATACATCCCCT 59.051 37.037 0.00 0.00 0.00 4.79
1748 2722 8.120140 ACTAAAATACGTCTAGATACATCCCC 57.880 38.462 0.00 0.00 0.00 4.81
1749 2723 9.623350 GAACTAAAATACGTCTAGATACATCCC 57.377 37.037 0.00 0.00 0.00 3.85
1781 2755 8.814931 TGTCATCAAAATGGATAAAAAGGATGT 58.185 29.630 0.00 0.00 33.29 3.06
1782 2756 9.656040 TTGTCATCAAAATGGATAAAAAGGATG 57.344 29.630 0.00 0.00 33.42 3.51
1783 2757 9.880157 CTTGTCATCAAAATGGATAAAAAGGAT 57.120 29.630 0.00 0.00 33.42 3.24
1784 2758 8.869109 ACTTGTCATCAAAATGGATAAAAAGGA 58.131 29.630 0.00 0.00 33.42 3.36
1792 2766 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
1793 2767 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
1794 2768 7.312154 TCCGAAAATACTTGTCATCAAAATGG 58.688 34.615 0.00 0.00 33.42 3.16
1795 2769 8.800972 CATCCGAAAATACTTGTCATCAAAATG 58.199 33.333 0.00 0.00 32.87 2.32
1796 2770 7.975616 CCATCCGAAAATACTTGTCATCAAAAT 59.024 33.333 0.00 0.00 32.87 1.82
1797 2771 7.175816 TCCATCCGAAAATACTTGTCATCAAAA 59.824 33.333 0.00 0.00 32.87 2.44
1798 2772 6.657117 TCCATCCGAAAATACTTGTCATCAAA 59.343 34.615 0.00 0.00 32.87 2.69
1799 2773 6.176896 TCCATCCGAAAATACTTGTCATCAA 58.823 36.000 0.00 0.00 0.00 2.57
1800 2774 5.739959 TCCATCCGAAAATACTTGTCATCA 58.260 37.500 0.00 0.00 0.00 3.07
1801 2775 5.237344 CCTCCATCCGAAAATACTTGTCATC 59.763 44.000 0.00 0.00 0.00 2.92
1802 2776 5.104527 TCCTCCATCCGAAAATACTTGTCAT 60.105 40.000 0.00 0.00 0.00 3.06
1803 2777 4.224147 TCCTCCATCCGAAAATACTTGTCA 59.776 41.667 0.00 0.00 0.00 3.58
1804 2778 4.766375 TCCTCCATCCGAAAATACTTGTC 58.234 43.478 0.00 0.00 0.00 3.18
1805 2779 4.837093 TCCTCCATCCGAAAATACTTGT 57.163 40.909 0.00 0.00 0.00 3.16
1806 2780 7.282224 TGTTATTCCTCCATCCGAAAATACTTG 59.718 37.037 0.00 0.00 0.00 3.16
1807 2781 7.343357 TGTTATTCCTCCATCCGAAAATACTT 58.657 34.615 0.00 0.00 0.00 2.24
1808 2782 6.895782 TGTTATTCCTCCATCCGAAAATACT 58.104 36.000 0.00 0.00 0.00 2.12
1809 2783 7.745620 ATGTTATTCCTCCATCCGAAAATAC 57.254 36.000 0.00 0.00 0.00 1.89
1810 2784 9.854668 TTTATGTTATTCCTCCATCCGAAAATA 57.145 29.630 0.00 0.00 0.00 1.40
1811 2785 8.630037 GTTTATGTTATTCCTCCATCCGAAAAT 58.370 33.333 0.00 0.00 0.00 1.82
1812 2786 7.067737 GGTTTATGTTATTCCTCCATCCGAAAA 59.932 37.037 0.00 0.00 0.00 2.29
1813 2787 6.544564 GGTTTATGTTATTCCTCCATCCGAAA 59.455 38.462 0.00 0.00 0.00 3.46
1814 2788 6.059484 GGTTTATGTTATTCCTCCATCCGAA 58.941 40.000 0.00 0.00 0.00 4.30
1815 2789 5.131308 TGGTTTATGTTATTCCTCCATCCGA 59.869 40.000 0.00 0.00 0.00 4.55
1816 2790 5.373222 TGGTTTATGTTATTCCTCCATCCG 58.627 41.667 0.00 0.00 0.00 4.18
1817 2791 5.770162 CCTGGTTTATGTTATTCCTCCATCC 59.230 44.000 0.00 0.00 0.00 3.51
1818 2792 6.601332 TCCTGGTTTATGTTATTCCTCCATC 58.399 40.000 0.00 0.00 0.00 3.51
1819 2793 6.590656 TCCTGGTTTATGTTATTCCTCCAT 57.409 37.500 0.00 0.00 0.00 3.41
1820 2794 6.159575 TCATCCTGGTTTATGTTATTCCTCCA 59.840 38.462 0.00 0.00 0.00 3.86
1821 2795 6.601332 TCATCCTGGTTTATGTTATTCCTCC 58.399 40.000 0.00 0.00 0.00 4.30
1822 2796 9.793259 TTATCATCCTGGTTTATGTTATTCCTC 57.207 33.333 0.00 0.00 0.00 3.71
1823 2797 9.799106 CTTATCATCCTGGTTTATGTTATTCCT 57.201 33.333 0.00 0.00 0.00 3.36
1824 2798 9.793259 TCTTATCATCCTGGTTTATGTTATTCC 57.207 33.333 0.00 0.00 0.00 3.01
1828 2802 9.967451 TGTTTCTTATCATCCTGGTTTATGTTA 57.033 29.630 0.00 0.00 0.00 2.41
1829 2803 8.877864 TGTTTCTTATCATCCTGGTTTATGTT 57.122 30.769 0.00 0.00 0.00 2.71
1856 2831 5.751990 ACTAAATAATTGTCCTTCGTAGCCG 59.248 40.000 0.00 0.00 0.00 5.52
1977 2954 7.027161 CCTTCATGTAATTTAACCTTCAACCG 58.973 38.462 0.00 0.00 0.00 4.44
2047 3024 3.264947 TCAGCTGCAGCAAGTGTAATAG 58.735 45.455 38.24 14.96 45.16 1.73
2096 3073 9.107177 AGAATGAATTAAGAGTATTGTCAGCAG 57.893 33.333 0.00 0.00 0.00 4.24
2459 3452 5.902681 TGAGACGGTTGTATTCCTGAATAG 58.097 41.667 0.00 0.00 34.27 1.73
2476 3469 8.673626 AATTAACTGCAAAATTGTATGAGACG 57.326 30.769 0.00 0.00 0.00 4.18
2679 3672 3.557898 GCACACATATACCCATGGAGAGG 60.558 52.174 15.22 0.00 0.00 3.69
2698 3691 7.247019 CCTATTTTGCTTAAAGAGAAGAGCAC 58.753 38.462 7.72 0.00 44.07 4.40
2783 3777 1.558233 ACTTTCTAGACTGGACCCGG 58.442 55.000 0.00 0.00 0.00 5.73
2784 3778 2.561419 TCAACTTTCTAGACTGGACCCG 59.439 50.000 0.00 0.00 0.00 5.28
2798 3792 7.198390 CACATCATTCTCACAGTTTCAACTTT 58.802 34.615 0.00 0.00 37.08 2.66
2802 3796 4.022935 GGCACATCATTCTCACAGTTTCAA 60.023 41.667 0.00 0.00 0.00 2.69
2809 3803 1.629861 TCTGGGCACATCATTCTCACA 59.370 47.619 0.00 0.00 0.00 3.58
2814 3808 3.272574 TCTTCTCTGGGCACATCATTC 57.727 47.619 0.00 0.00 0.00 2.67
2816 3810 3.726557 TTTCTTCTCTGGGCACATCAT 57.273 42.857 0.00 0.00 0.00 2.45
2825 3819 5.337975 CCCTAAGGAGAGTTTTCTTCTCTGG 60.338 48.000 0.05 0.00 38.39 3.86
2882 3879 9.926158 AGAGTTGCTATGAGAGAACATATATTG 57.074 33.333 0.00 0.00 33.21 1.90
2886 3883 6.488344 TCGAGAGTTGCTATGAGAGAACATAT 59.512 38.462 0.00 0.00 33.21 1.78
2889 3886 4.010349 TCGAGAGTTGCTATGAGAGAACA 58.990 43.478 0.00 0.00 0.00 3.18
3113 4110 2.483877 TGTCAGTTTATTGCTTGCCGAG 59.516 45.455 0.00 0.00 0.00 4.63
3121 4118 5.220024 GCGCAAGTTTATGTCAGTTTATTGC 60.220 40.000 0.30 0.00 41.68 3.56
3183 4263 3.955471 TGGATGTCCATCAAGTCCTTTC 58.045 45.455 9.34 0.00 42.01 2.62
3355 4438 9.297037 GCCCATACAGTAATTCCTTATTTGTAT 57.703 33.333 0.00 0.00 34.36 2.29
3357 4440 7.122715 TGCCCATACAGTAATTCCTTATTTGT 58.877 34.615 0.00 0.00 0.00 2.83
3437 4520 5.582689 AATACTGAAGCCATGTTTTAGCC 57.417 39.130 0.00 0.00 0.00 3.93
3438 4521 7.321745 ACTAATACTGAAGCCATGTTTTAGC 57.678 36.000 0.00 0.00 32.46 3.09
3467 4550 7.907563 GTGAGCTCAATAAAAATTAGTGAGAGC 59.092 37.037 23.86 16.60 40.77 4.09
3474 4557 9.683069 ACAAACAGTGAGCTCAATAAAAATTAG 57.317 29.630 20.19 5.11 0.00 1.73
3503 4587 4.636206 CCTCAATGAAGTGGCTAAGTAACC 59.364 45.833 0.00 0.00 0.00 2.85
3641 4725 6.071165 CCCACTATTCTGCTCAAAAGGAAATT 60.071 38.462 0.00 0.00 0.00 1.82
3649 4733 4.568072 TTAGCCCACTATTCTGCTCAAA 57.432 40.909 0.00 0.00 35.34 2.69
3668 4752 2.625790 GGAAACCAGTGGTGCACAATTA 59.374 45.455 17.56 0.00 35.34 1.40
3741 4825 7.176515 TGTCTACCATGGAACGTTAGTTAACTA 59.823 37.037 21.47 11.38 41.34 2.24
3760 4844 5.189659 AGATGAGCGTTTATCTGTCTACC 57.810 43.478 5.74 0.00 32.65 3.18
3765 4852 3.599343 TGCAAGATGAGCGTTTATCTGT 58.401 40.909 7.30 0.00 34.09 3.41
3820 4907 8.178313 ACGACTTCAAATTTCTAAGGGAAAAT 57.822 30.769 12.28 0.00 45.56 1.82
3821 4908 7.576861 ACGACTTCAAATTTCTAAGGGAAAA 57.423 32.000 12.28 0.00 45.56 2.29
3915 5002 1.219522 CCACGTTTCGAAGCTTCCGT 61.220 55.000 20.62 19.57 0.00 4.69
4042 5130 1.613255 CGGTACCCAAAGGACTTGCAT 60.613 52.381 6.25 0.00 36.73 3.96
4082 5170 9.076596 GTTTGAGGAATAAAACATATTGCTGTC 57.923 33.333 6.91 0.00 36.06 3.51
4168 5256 6.567602 ACTACATCTTCTAGCTTTTGGGAT 57.432 37.500 0.00 0.00 0.00 3.85
4169 5257 7.500992 CATACTACATCTTCTAGCTTTTGGGA 58.499 38.462 0.00 0.00 0.00 4.37
4475 5573 6.643360 TGAGTTCATTTGCAACAGATGATTTG 59.357 34.615 11.97 0.00 35.46 2.32
4476 5574 6.751157 TGAGTTCATTTGCAACAGATGATTT 58.249 32.000 11.97 5.08 35.46 2.17
4477 5575 6.335471 TGAGTTCATTTGCAACAGATGATT 57.665 33.333 11.97 5.37 35.46 2.57
4478 5576 5.621555 GCTGAGTTCATTTGCAACAGATGAT 60.622 40.000 11.97 0.38 35.46 2.45
4479 5577 4.320714 GCTGAGTTCATTTGCAACAGATGA 60.321 41.667 13.41 10.80 34.03 2.92
4480 5578 3.918591 GCTGAGTTCATTTGCAACAGATG 59.081 43.478 13.41 8.80 0.00 2.90
4481 5579 3.057033 GGCTGAGTTCATTTGCAACAGAT 60.057 43.478 13.41 0.00 0.00 2.90
4482 5580 2.294233 GGCTGAGTTCATTTGCAACAGA 59.706 45.455 13.41 5.66 0.00 3.41
4483 5581 2.034939 TGGCTGAGTTCATTTGCAACAG 59.965 45.455 0.00 2.31 0.00 3.16
4484 5582 2.030371 TGGCTGAGTTCATTTGCAACA 58.970 42.857 0.00 0.00 0.00 3.33
4485 5583 2.798976 TGGCTGAGTTCATTTGCAAC 57.201 45.000 0.00 0.00 0.00 4.17
4486 5584 3.815856 TTTGGCTGAGTTCATTTGCAA 57.184 38.095 0.00 0.00 0.00 4.08
4487 5585 3.321396 TGATTTGGCTGAGTTCATTTGCA 59.679 39.130 0.00 0.00 0.00 4.08
4488 5586 3.916761 TGATTTGGCTGAGTTCATTTGC 58.083 40.909 0.00 0.00 0.00 3.68
4489 5587 5.805486 CAGATGATTTGGCTGAGTTCATTTG 59.195 40.000 0.00 0.00 0.00 2.32
4490 5588 5.479375 ACAGATGATTTGGCTGAGTTCATTT 59.521 36.000 0.00 0.00 33.94 2.32
4491 5589 5.014858 ACAGATGATTTGGCTGAGTTCATT 58.985 37.500 0.00 0.00 33.94 2.57
4492 5590 4.597004 ACAGATGATTTGGCTGAGTTCAT 58.403 39.130 0.00 0.00 33.94 2.57
4493 5591 4.025040 ACAGATGATTTGGCTGAGTTCA 57.975 40.909 0.00 0.00 33.94 3.18
4494 5592 4.730657 CAACAGATGATTTGGCTGAGTTC 58.269 43.478 0.00 0.00 33.94 3.01
4495 5593 3.057033 GCAACAGATGATTTGGCTGAGTT 60.057 43.478 0.00 0.00 33.94 3.01
4496 5594 2.490903 GCAACAGATGATTTGGCTGAGT 59.509 45.455 0.00 0.00 33.94 3.41
4497 5595 2.490509 TGCAACAGATGATTTGGCTGAG 59.509 45.455 0.00 0.00 33.94 3.35
4498 5596 2.229543 GTGCAACAGATGATTTGGCTGA 59.770 45.455 0.00 0.00 36.32 4.26
4499 5597 2.602878 GTGCAACAGATGATTTGGCTG 58.397 47.619 0.00 0.00 36.32 4.85
4500 5598 1.547372 GGTGCAACAGATGATTTGGCT 59.453 47.619 0.00 0.00 39.98 4.75
4501 5599 1.404583 GGGTGCAACAGATGATTTGGC 60.405 52.381 3.06 0.00 39.98 4.52
4502 5600 1.894466 TGGGTGCAACAGATGATTTGG 59.106 47.619 3.06 0.00 39.98 3.28
4551 5649 4.178956 TGCCAAAACCTCCTTAAGAACT 57.821 40.909 3.36 0.00 0.00 3.01
4575 5673 0.539986 GTGATCGGGAAGCCCACTAA 59.460 55.000 3.03 0.00 45.83 2.24
4576 5674 1.335132 GGTGATCGGGAAGCCCACTA 61.335 60.000 3.03 0.00 45.83 2.74
4577 5675 2.670148 GGTGATCGGGAAGCCCACT 61.670 63.158 3.03 0.00 45.83 4.00
4578 5676 2.124695 GGTGATCGGGAAGCCCAC 60.125 66.667 3.03 0.00 45.83 4.61
4677 7336 2.681778 ACTGCTCTACGCCCTGCT 60.682 61.111 0.00 0.00 38.05 4.24
4710 7369 1.024271 CGAAATTGGGGATCGTGCAT 58.976 50.000 0.00 0.00 0.00 3.96
4882 7541 2.872557 CAACCATGCCAGCGTGAG 59.127 61.111 13.38 6.17 35.09 3.51
4899 7558 2.870372 CAGGGTTTAGCGTGCTGC 59.130 61.111 4.25 0.00 46.98 5.25
4900 7559 1.308069 ATGCAGGGTTTAGCGTGCTG 61.308 55.000 22.06 4.32 36.84 4.41
4901 7560 1.002134 ATGCAGGGTTTAGCGTGCT 60.002 52.632 22.06 0.00 36.84 4.40
4902 7561 1.026718 AGATGCAGGGTTTAGCGTGC 61.027 55.000 16.91 16.91 36.42 5.34
4903 7562 1.131126 CAAGATGCAGGGTTTAGCGTG 59.869 52.381 0.00 0.00 0.00 5.34
4904 7563 1.453155 CAAGATGCAGGGTTTAGCGT 58.547 50.000 0.00 0.00 0.00 5.07
4905 7564 0.734889 CCAAGATGCAGGGTTTAGCG 59.265 55.000 0.00 0.00 0.00 4.26
4906 7565 2.019984 CTCCAAGATGCAGGGTTTAGC 58.980 52.381 0.00 0.00 0.00 3.09
4907 7566 2.019984 GCTCCAAGATGCAGGGTTTAG 58.980 52.381 0.00 0.00 0.00 1.85
4908 7567 1.340991 GGCTCCAAGATGCAGGGTTTA 60.341 52.381 0.00 0.00 0.00 2.01
4909 7568 0.613012 GGCTCCAAGATGCAGGGTTT 60.613 55.000 0.00 0.00 0.00 3.27
4910 7569 1.000396 GGCTCCAAGATGCAGGGTT 60.000 57.895 0.00 0.00 0.00 4.11
4911 7570 2.679716 GGCTCCAAGATGCAGGGT 59.320 61.111 0.00 0.00 0.00 4.34
4912 7571 2.123982 GGGCTCCAAGATGCAGGG 60.124 66.667 0.00 0.00 0.00 4.45
4913 7572 2.123982 GGGGCTCCAAGATGCAGG 60.124 66.667 0.00 0.00 0.00 4.85
4914 7573 1.453379 CTGGGGCTCCAAGATGCAG 60.453 63.158 6.84 0.00 43.51 4.41
4915 7574 1.918467 CTCTGGGGCTCCAAGATGCA 61.918 60.000 6.84 0.00 43.51 3.96
4916 7575 1.153005 CTCTGGGGCTCCAAGATGC 60.153 63.158 6.84 0.00 43.51 3.91
4917 7576 0.179936 GTCTCTGGGGCTCCAAGATG 59.820 60.000 6.84 0.00 43.51 2.90
4918 7577 0.043940 AGTCTCTGGGGCTCCAAGAT 59.956 55.000 6.84 1.05 43.51 2.40
4919 7578 0.616111 GAGTCTCTGGGGCTCCAAGA 60.616 60.000 6.84 10.15 43.51 3.02
4920 7579 1.621672 GGAGTCTCTGGGGCTCCAAG 61.622 65.000 23.10 7.66 45.93 3.61
4921 7580 1.613630 GGAGTCTCTGGGGCTCCAA 60.614 63.158 23.10 0.00 45.93 3.53
4922 7581 2.039624 GGAGTCTCTGGGGCTCCA 59.960 66.667 23.10 4.49 45.93 3.86
4923 7582 1.760480 GAGGAGTCTCTGGGGCTCC 60.760 68.421 20.68 20.68 46.75 4.70
4924 7583 3.948702 GAGGAGTCTCTGGGGCTC 58.051 66.667 0.00 0.00 37.07 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.