Multiple sequence alignment - TraesCS3D01G223100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G223100 chr3D 100.000 3762 0 0 1 3762 304031335 304027574 0.000000e+00 6948.0
1 TraesCS3D01G223100 chr3D 94.595 37 1 1 2924 2959 559121738 559121774 5.250000e-04 56.5
2 TraesCS3D01G223100 chr3D 96.875 32 0 1 2924 2954 177601116 177601147 7.000000e-03 52.8
3 TraesCS3D01G223100 chr3B 93.781 2991 90 42 763 3698 417374298 417377247 0.000000e+00 4405.0
4 TraesCS3D01G223100 chr3B 97.030 303 9 0 134 436 417373165 417373467 9.320000e-141 510.0
5 TraesCS3D01G223100 chr3B 78.035 346 74 2 2400 2744 267412 267756 2.280000e-52 217.0
6 TraesCS3D01G223100 chr3B 91.579 95 6 2 37 129 417371513 417371607 3.050000e-26 130.0
7 TraesCS3D01G223100 chr3B 100.000 45 0 0 1 45 417371507 417371551 2.410000e-12 84.2
8 TraesCS3D01G223100 chr3A 94.509 2149 67 24 1584 3709 430526506 430528626 0.000000e+00 3267.0
9 TraesCS3D01G223100 chr3A 90.315 857 40 17 763 1585 430525584 430526431 0.000000e+00 1083.0
10 TraesCS3D01G223100 chr3A 89.323 384 13 6 37 392 430525017 430525400 1.230000e-124 457.0
11 TraesCS3D01G223100 chr3A 97.778 45 1 0 1 45 430525011 430525055 1.120000e-10 78.7
12 TraesCS3D01G223100 chr3A 94.737 38 1 1 2924 2960 749188917 749188880 1.460000e-04 58.4
13 TraesCS3D01G223100 chr3A 94.595 37 1 1 2925 2960 494387915 494387951 5.250000e-04 56.5
14 TraesCS3D01G223100 chr7A 100.000 33 0 0 2893 2925 575100049 575100017 1.130000e-05 62.1
15 TraesCS3D01G223100 chr5D 95.000 40 1 1 3707 3745 564899414 564899375 1.130000e-05 62.1
16 TraesCS3D01G223100 chr1A 94.872 39 1 1 2924 2961 33386544 33386506 4.060000e-05 60.2
17 TraesCS3D01G223100 chr1A 100.000 30 0 0 2896 2925 125146288 125146259 5.250000e-04 56.5
18 TraesCS3D01G223100 chr6B 89.130 46 5 0 2916 2961 642917185 642917140 1.460000e-04 58.4
19 TraesCS3D01G223100 chrUn 100.000 30 0 0 2896 2925 369681473 369681444 5.250000e-04 56.5
20 TraesCS3D01G223100 chrUn 100.000 30 0 0 2896 2925 382726882 382726911 5.250000e-04 56.5
21 TraesCS3D01G223100 chr6D 100.000 30 0 0 2897 2926 406619763 406619792 5.250000e-04 56.5
22 TraesCS3D01G223100 chr6A 94.444 36 2 0 2891 2926 209854342 209854377 5.250000e-04 56.5
23 TraesCS3D01G223100 chr5A 100.000 30 0 0 2897 2926 458475400 458475429 5.250000e-04 56.5
24 TraesCS3D01G223100 chr5B 92.308 39 2 1 2923 2960 386464046 386464008 2.000000e-03 54.7
25 TraesCS3D01G223100 chr2D 100.000 28 0 0 2926 2953 643190815 643190842 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G223100 chr3D 304027574 304031335 3761 True 6948.000 6948 100.00000 1 3762 1 chr3D.!!$R1 3761
1 TraesCS3D01G223100 chr3B 417371507 417377247 5740 False 1282.300 4405 95.59750 1 3698 4 chr3B.!!$F2 3697
2 TraesCS3D01G223100 chr3A 430525011 430528626 3615 False 1221.425 3267 92.98125 1 3709 4 chr3A.!!$F2 3708

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
690 2985 0.036577 CAACTGGAGACTGGCAGGAG 60.037 60.0 20.34 8.59 0.00 3.69 F
728 3023 0.036765 CCTTTCGGGATCCAACGTGA 60.037 55.0 15.23 0.00 37.23 4.35 F
730 3025 0.036765 TTTCGGGATCCAACGTGAGG 60.037 55.0 15.23 0.00 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1889 4297 0.681564 CTCTGAGGTAGACGGCCAGT 60.682 60.00 2.24 0.72 0.00 4.00 R
2710 5125 0.401356 TGAGCCAAATGGAGTGCAGA 59.599 50.00 2.98 0.00 37.39 4.26 R
2985 5417 9.679661 TTTTCAATGTCAAGTAGAATAGCCATA 57.320 29.63 0.00 0.00 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 2.026542 TGAGCTCAGCCAAATCATCTGT 60.027 45.455 13.74 0.00 0.00 3.41
41 42 3.015327 GAGCTCAGCCAAATCATCTGTT 58.985 45.455 9.40 0.00 0.00 3.16
42 43 2.753452 AGCTCAGCCAAATCATCTGTTG 59.247 45.455 0.00 0.00 0.00 3.33
43 44 2.734492 GCTCAGCCAAATCATCTGTTGC 60.734 50.000 0.00 0.00 0.00 4.17
44 45 2.490509 CTCAGCCAAATCATCTGTTGCA 59.509 45.455 0.00 0.00 0.00 4.08
45 46 2.892215 TCAGCCAAATCATCTGTTGCAA 59.108 40.909 0.00 0.00 0.00 4.08
46 47 3.321396 TCAGCCAAATCATCTGTTGCAAA 59.679 39.130 0.00 0.00 0.00 3.68
47 48 4.020928 TCAGCCAAATCATCTGTTGCAAAT 60.021 37.500 0.00 0.00 0.00 2.32
48 49 4.092821 CAGCCAAATCATCTGTTGCAAATG 59.907 41.667 0.00 1.39 0.00 2.32
49 50 4.020928 AGCCAAATCATCTGTTGCAAATGA 60.021 37.500 13.26 13.26 34.17 2.57
50 51 4.691685 GCCAAATCATCTGTTGCAAATGAA 59.308 37.500 14.53 1.69 33.44 2.57
51 52 5.390145 GCCAAATCATCTGTTGCAAATGAAC 60.390 40.000 14.53 0.00 33.44 3.18
52 53 5.929992 CCAAATCATCTGTTGCAAATGAACT 59.070 36.000 14.53 4.65 33.44 3.01
53 54 6.090358 CCAAATCATCTGTTGCAAATGAACTC 59.910 38.462 14.53 0.00 33.44 3.01
54 55 5.970317 ATCATCTGTTGCAAATGAACTCA 57.030 34.783 14.53 0.56 33.44 3.41
55 56 5.366829 TCATCTGTTGCAAATGAACTCAG 57.633 39.130 9.36 7.13 0.00 3.35
56 57 3.631145 TCTGTTGCAAATGAACTCAGC 57.369 42.857 0.00 0.00 0.00 4.26
57 58 2.294233 TCTGTTGCAAATGAACTCAGCC 59.706 45.455 0.00 0.00 0.00 4.85
58 59 2.030371 TGTTGCAAATGAACTCAGCCA 58.970 42.857 0.00 0.00 0.00 4.75
59 60 2.429971 TGTTGCAAATGAACTCAGCCAA 59.570 40.909 0.00 0.00 0.00 4.52
60 61 3.118847 TGTTGCAAATGAACTCAGCCAAA 60.119 39.130 0.00 0.00 0.00 3.28
61 62 4.060205 GTTGCAAATGAACTCAGCCAAAT 58.940 39.130 0.00 0.00 0.00 2.32
62 63 3.916761 TGCAAATGAACTCAGCCAAATC 58.083 40.909 0.00 0.00 0.00 2.17
63 64 3.321396 TGCAAATGAACTCAGCCAAATCA 59.679 39.130 0.00 0.00 0.00 2.57
64 65 4.020928 TGCAAATGAACTCAGCCAAATCAT 60.021 37.500 0.00 0.00 32.36 2.45
65 66 4.565564 GCAAATGAACTCAGCCAAATCATC 59.434 41.667 0.00 0.00 30.76 2.92
66 67 5.623824 GCAAATGAACTCAGCCAAATCATCT 60.624 40.000 0.00 0.00 30.76 2.90
67 68 5.578005 AATGAACTCAGCCAAATCATCTG 57.422 39.130 0.00 0.00 30.76 2.90
79 80 3.377253 AATCATCTGTTGCACCCATCT 57.623 42.857 0.00 0.00 0.00 2.90
105 106 6.631971 TGTCAGAACATCAATTTACAAGCA 57.368 33.333 0.00 0.00 0.00 3.91
129 130 5.602561 AGTTCTTAAGGAGGTTTTGGCAAAT 59.397 36.000 14.29 0.00 0.00 2.32
130 131 6.099701 AGTTCTTAAGGAGGTTTTGGCAAATT 59.900 34.615 14.29 6.49 0.00 1.82
131 132 7.289084 AGTTCTTAAGGAGGTTTTGGCAAATTA 59.711 33.333 14.29 5.48 0.00 1.40
132 133 7.227049 TCTTAAGGAGGTTTTGGCAAATTAG 57.773 36.000 14.29 0.60 0.00 1.73
231 1793 1.067295 AGGGCAGACTGATGAACCAA 58.933 50.000 6.65 0.00 0.00 3.67
264 1826 0.317160 CAGTGGTGCGTTCTGTCCTA 59.683 55.000 0.00 0.00 0.00 2.94
436 1998 2.124445 GGTGGAATACGGTGGGCC 60.124 66.667 0.00 0.00 0.00 5.80
437 1999 2.676265 GGTGGAATACGGTGGGCCT 61.676 63.158 4.53 0.00 0.00 5.19
438 2000 1.153229 GTGGAATACGGTGGGCCTC 60.153 63.158 4.53 0.00 0.00 4.70
439 2001 1.613928 TGGAATACGGTGGGCCTCA 60.614 57.895 4.53 0.00 0.00 3.86
441 2003 1.520787 GAATACGGTGGGCCTCACG 60.521 63.158 15.48 9.36 46.96 4.35
442 2004 3.675619 AATACGGTGGGCCTCACGC 62.676 63.158 15.48 9.37 46.96 5.34
452 2014 2.360350 CCTCACGCTGGCATGGTT 60.360 61.111 0.00 0.00 0.00 3.67
453 2015 2.693762 CCTCACGCTGGCATGGTTG 61.694 63.158 0.00 0.00 0.00 3.77
463 2025 3.577229 CATGGTTGCAGCACGCTA 58.423 55.556 2.05 0.00 43.06 4.26
464 2026 1.875262 CATGGTTGCAGCACGCTAA 59.125 52.632 2.05 0.00 43.06 3.09
465 2027 0.240678 CATGGTTGCAGCACGCTAAA 59.759 50.000 2.05 0.00 43.06 1.85
466 2028 0.240945 ATGGTTGCAGCACGCTAAAC 59.759 50.000 2.05 7.80 43.06 2.01
468 2030 1.081442 GTTGCAGCACGCTAAACCC 60.081 57.895 0.00 0.00 43.06 4.11
469 2031 1.228124 TTGCAGCACGCTAAACCCT 60.228 52.632 0.00 0.00 43.06 4.34
471 2033 2.870372 CAGCACGCTAAACCCTGC 59.130 61.111 0.00 0.00 0.00 4.85
472 2034 1.965930 CAGCACGCTAAACCCTGCA 60.966 57.895 0.00 0.00 31.71 4.41
473 2035 1.002134 AGCACGCTAAACCCTGCAT 60.002 52.632 0.00 0.00 31.71 3.96
474 2036 1.026718 AGCACGCTAAACCCTGCATC 61.027 55.000 0.00 0.00 31.71 3.91
475 2037 1.026718 GCACGCTAAACCCTGCATCT 61.027 55.000 0.00 0.00 0.00 2.90
476 2038 1.453155 CACGCTAAACCCTGCATCTT 58.547 50.000 0.00 0.00 0.00 2.40
477 2039 1.131126 CACGCTAAACCCTGCATCTTG 59.869 52.381 0.00 0.00 0.00 3.02
478 2040 0.734889 CGCTAAACCCTGCATCTTGG 59.265 55.000 0.00 0.00 0.00 3.61
479 2041 1.678728 CGCTAAACCCTGCATCTTGGA 60.679 52.381 0.00 0.00 0.00 3.53
481 2043 2.019984 CTAAACCCTGCATCTTGGAGC 58.980 52.381 0.00 0.00 34.22 4.70
483 2045 2.123982 CCCTGCATCTTGGAGCCC 60.124 66.667 0.00 0.00 34.22 5.19
484 2046 2.123982 CCTGCATCTTGGAGCCCC 60.124 66.667 0.00 0.00 34.22 5.80
486 2048 1.453379 CTGCATCTTGGAGCCCCAG 60.453 63.158 0.00 0.00 44.60 4.45
487 2049 1.918467 CTGCATCTTGGAGCCCCAGA 61.918 60.000 0.00 0.00 44.60 3.86
490 2052 0.179936 CATCTTGGAGCCCCAGAGAC 59.820 60.000 2.18 0.00 44.60 3.36
492 2054 0.616111 TCTTGGAGCCCCAGAGACTC 60.616 60.000 0.00 0.00 44.60 3.36
494 2056 2.366570 GGAGCCCCAGAGACTCCT 59.633 66.667 0.00 0.00 45.44 3.69
495 2057 1.760480 GGAGCCCCAGAGACTCCTC 60.760 68.421 0.00 0.00 45.44 3.71
497 2059 0.755327 GAGCCCCAGAGACTCCTCTC 60.755 65.000 0.00 0.00 46.38 3.20
504 2066 3.298320 GAGACTCCTCTCTGGCCTT 57.702 57.895 3.32 0.00 40.09 4.35
505 2067 1.111277 GAGACTCCTCTCTGGCCTTC 58.889 60.000 3.32 0.00 40.09 3.46
507 2069 0.823460 GACTCCTCTCTGGCCTTCTG 59.177 60.000 3.32 0.00 35.26 3.02
508 2070 0.617249 ACTCCTCTCTGGCCTTCTGG 60.617 60.000 3.32 0.00 35.26 3.86
510 2072 1.306482 CCTCTCTGGCCTTCTGGGA 60.306 63.158 3.32 0.00 37.23 4.37
519 2814 0.321653 GCCTTCTGGGACGACATTGT 60.322 55.000 0.00 0.00 37.23 2.71
521 2816 1.276421 CCTTCTGGGACGACATTGTCT 59.724 52.381 14.54 2.27 38.91 3.41
526 2821 1.078759 GGGACGACATTGTCTCTGCG 61.079 60.000 14.54 4.45 36.39 5.18
529 2824 0.598562 ACGACATTGTCTCTGCGACT 59.401 50.000 14.54 0.00 43.25 4.18
532 2827 2.414161 CGACATTGTCTCTGCGACTACA 60.414 50.000 14.54 0.00 43.25 2.74
534 2829 1.923204 CATTGTCTCTGCGACTACAGC 59.077 52.381 0.00 0.00 43.25 4.40
542 2837 4.870305 CGACTACAGCGCTCAACT 57.130 55.556 7.13 0.00 0.00 3.16
543 2838 2.643044 CGACTACAGCGCTCAACTC 58.357 57.895 7.13 0.00 0.00 3.01
544 2839 0.798771 CGACTACAGCGCTCAACTCC 60.799 60.000 7.13 0.00 0.00 3.85
547 2842 1.337260 ACTACAGCGCTCAACTCCAAG 60.337 52.381 7.13 0.00 0.00 3.61
550 2845 2.747855 GCGCTCAACTCCAAGGGG 60.748 66.667 0.00 0.00 0.00 4.79
551 2846 3.068881 CGCTCAACTCCAAGGGGA 58.931 61.111 0.00 0.00 42.29 4.81
554 2849 1.209504 CGCTCAACTCCAAGGGGATTA 59.790 52.381 0.00 0.00 43.91 1.75
555 2850 2.743183 CGCTCAACTCCAAGGGGATTAG 60.743 54.545 0.00 0.00 43.91 1.73
556 2851 2.505819 GCTCAACTCCAAGGGGATTAGA 59.494 50.000 0.00 0.00 43.91 2.10
557 2852 3.137360 GCTCAACTCCAAGGGGATTAGAT 59.863 47.826 0.00 0.00 43.91 1.98
558 2853 4.745172 GCTCAACTCCAAGGGGATTAGATC 60.745 50.000 0.00 0.00 43.91 2.75
560 2855 1.694696 ACTCCAAGGGGATTAGATCGC 59.305 52.381 0.00 0.00 43.91 4.58
561 2856 1.974236 CTCCAAGGGGATTAGATCGCT 59.026 52.381 5.20 0.00 43.91 4.93
562 2857 3.165875 CTCCAAGGGGATTAGATCGCTA 58.834 50.000 5.20 0.00 43.91 4.26
563 2858 3.578716 CTCCAAGGGGATTAGATCGCTAA 59.421 47.826 5.20 0.00 43.91 3.09
564 2859 3.971305 TCCAAGGGGATTAGATCGCTAAA 59.029 43.478 5.20 0.00 39.85 1.85
565 2860 4.597507 TCCAAGGGGATTAGATCGCTAAAT 59.402 41.667 5.20 0.00 39.85 1.40
567 2862 4.559862 AGGGGATTAGATCGCTAAATGG 57.440 45.455 5.20 0.00 39.85 3.16
569 2864 4.020128 AGGGGATTAGATCGCTAAATGGTC 60.020 45.833 5.20 0.00 39.85 4.02
570 2865 4.254492 GGGATTAGATCGCTAAATGGTCC 58.746 47.826 0.00 0.00 39.85 4.46
571 2866 4.020128 GGGATTAGATCGCTAAATGGTCCT 60.020 45.833 0.00 0.00 39.85 3.85
572 2867 4.932200 GGATTAGATCGCTAAATGGTCCTG 59.068 45.833 0.00 0.00 39.85 3.86
573 2868 5.279506 GGATTAGATCGCTAAATGGTCCTGA 60.280 44.000 0.00 0.00 39.85 3.86
575 2870 4.264460 AGATCGCTAAATGGTCCTGATC 57.736 45.455 0.00 0.00 0.00 2.92
578 2873 1.860950 CGCTAAATGGTCCTGATCGTG 59.139 52.381 0.00 0.00 0.00 4.35
579 2874 2.738643 CGCTAAATGGTCCTGATCGTGT 60.739 50.000 0.00 0.00 0.00 4.49
580 2875 2.609459 GCTAAATGGTCCTGATCGTGTG 59.391 50.000 0.00 0.00 0.00 3.82
581 2876 2.113860 AAATGGTCCTGATCGTGTGG 57.886 50.000 0.00 0.00 0.00 4.17
582 2877 1.275666 AATGGTCCTGATCGTGTGGA 58.724 50.000 0.00 0.00 0.00 4.02
583 2878 0.537188 ATGGTCCTGATCGTGTGGAC 59.463 55.000 14.64 14.64 46.83 4.02
584 2879 0.541998 TGGTCCTGATCGTGTGGACT 60.542 55.000 19.31 0.00 46.76 3.85
586 2881 1.178276 GTCCTGATCGTGTGGACTCT 58.822 55.000 15.32 0.00 44.84 3.24
589 2884 1.403382 CCTGATCGTGTGGACTCTGTG 60.403 57.143 0.00 0.00 0.00 3.66
590 2885 0.603065 TGATCGTGTGGACTCTGTGG 59.397 55.000 0.00 0.00 0.00 4.17
591 2886 0.737715 GATCGTGTGGACTCTGTGGC 60.738 60.000 0.00 0.00 0.00 5.01
592 2887 1.188219 ATCGTGTGGACTCTGTGGCT 61.188 55.000 0.00 0.00 0.00 4.75
593 2888 0.538746 TCGTGTGGACTCTGTGGCTA 60.539 55.000 0.00 0.00 0.00 3.93
594 2889 0.109086 CGTGTGGACTCTGTGGCTAG 60.109 60.000 0.00 0.00 0.00 3.42
595 2890 1.257743 GTGTGGACTCTGTGGCTAGA 58.742 55.000 0.00 0.00 0.00 2.43
596 2891 1.618837 GTGTGGACTCTGTGGCTAGAA 59.381 52.381 0.00 0.00 0.00 2.10
597 2892 1.618837 TGTGGACTCTGTGGCTAGAAC 59.381 52.381 0.00 0.00 0.00 3.01
598 2893 0.888619 TGGACTCTGTGGCTAGAACG 59.111 55.000 0.00 0.00 0.00 3.95
599 2894 0.173708 GGACTCTGTGGCTAGAACGG 59.826 60.000 0.00 0.00 0.00 4.44
600 2895 1.174783 GACTCTGTGGCTAGAACGGA 58.825 55.000 0.00 0.38 0.00 4.69
601 2896 1.544691 GACTCTGTGGCTAGAACGGAA 59.455 52.381 8.41 0.00 32.64 4.30
603 2898 1.272490 CTCTGTGGCTAGAACGGAACA 59.728 52.381 8.41 0.00 32.64 3.18
604 2899 1.689813 TCTGTGGCTAGAACGGAACAA 59.310 47.619 0.00 0.00 29.97 2.83
605 2900 2.069273 CTGTGGCTAGAACGGAACAAG 58.931 52.381 0.00 0.00 0.00 3.16
606 2901 1.689813 TGTGGCTAGAACGGAACAAGA 59.310 47.619 0.00 0.00 0.00 3.02
607 2902 2.301870 TGTGGCTAGAACGGAACAAGAT 59.698 45.455 0.00 0.00 0.00 2.40
608 2903 3.512329 TGTGGCTAGAACGGAACAAGATA 59.488 43.478 0.00 0.00 0.00 1.98
609 2904 4.020928 TGTGGCTAGAACGGAACAAGATAA 60.021 41.667 0.00 0.00 0.00 1.75
610 2905 5.116882 GTGGCTAGAACGGAACAAGATAAT 58.883 41.667 0.00 0.00 0.00 1.28
611 2906 5.585047 GTGGCTAGAACGGAACAAGATAATT 59.415 40.000 0.00 0.00 0.00 1.40
612 2907 6.093633 GTGGCTAGAACGGAACAAGATAATTT 59.906 38.462 0.00 0.00 0.00 1.82
613 2908 6.657541 TGGCTAGAACGGAACAAGATAATTTT 59.342 34.615 0.00 0.00 0.00 1.82
614 2909 7.148306 TGGCTAGAACGGAACAAGATAATTTTC 60.148 37.037 0.00 0.00 0.00 2.29
615 2910 6.900299 GCTAGAACGGAACAAGATAATTTTCG 59.100 38.462 0.00 0.00 0.00 3.46
616 2911 7.201496 GCTAGAACGGAACAAGATAATTTTCGA 60.201 37.037 0.00 0.00 0.00 3.71
617 2912 6.828672 AGAACGGAACAAGATAATTTTCGAC 58.171 36.000 0.00 0.00 0.00 4.20
618 2913 5.199424 ACGGAACAAGATAATTTTCGACG 57.801 39.130 0.00 0.00 0.00 5.12
619 2914 4.019867 CGGAACAAGATAATTTTCGACGC 58.980 43.478 0.00 0.00 0.00 5.19
620 2915 4.340263 GGAACAAGATAATTTTCGACGCC 58.660 43.478 0.00 0.00 0.00 5.68
621 2916 4.142773 GGAACAAGATAATTTTCGACGCCA 60.143 41.667 0.00 0.00 0.00 5.69
622 2917 5.365403 AACAAGATAATTTTCGACGCCAA 57.635 34.783 0.00 0.00 0.00 4.52
623 2918 4.969816 ACAAGATAATTTTCGACGCCAAG 58.030 39.130 0.00 0.00 0.00 3.61
624 2919 4.693566 ACAAGATAATTTTCGACGCCAAGA 59.306 37.500 0.00 0.00 0.00 3.02
625 2920 5.354234 ACAAGATAATTTTCGACGCCAAGAT 59.646 36.000 0.00 0.00 0.00 2.40
626 2921 6.537301 ACAAGATAATTTTCGACGCCAAGATA 59.463 34.615 0.00 0.00 0.00 1.98
627 2922 7.226720 ACAAGATAATTTTCGACGCCAAGATAT 59.773 33.333 0.00 0.00 0.00 1.63
628 2923 7.352719 AGATAATTTTCGACGCCAAGATATC 57.647 36.000 0.00 0.00 0.00 1.63
629 2924 4.813296 AATTTTCGACGCCAAGATATCC 57.187 40.909 0.00 0.00 0.00 2.59
630 2925 2.234300 TTTCGACGCCAAGATATCCC 57.766 50.000 0.00 0.00 0.00 3.85
631 2926 0.391597 TTCGACGCCAAGATATCCCC 59.608 55.000 0.00 0.00 0.00 4.81
632 2927 1.372997 CGACGCCAAGATATCCCCG 60.373 63.158 0.00 0.05 0.00 5.73
633 2928 1.802337 CGACGCCAAGATATCCCCGA 61.802 60.000 0.00 0.00 0.00 5.14
634 2929 0.608640 GACGCCAAGATATCCCCGAT 59.391 55.000 0.00 0.00 0.00 4.18
635 2930 0.321671 ACGCCAAGATATCCCCGATG 59.678 55.000 0.00 0.00 0.00 3.84
636 2931 0.608130 CGCCAAGATATCCCCGATGA 59.392 55.000 0.00 0.00 0.00 2.92
637 2932 1.673033 CGCCAAGATATCCCCGATGAC 60.673 57.143 0.00 0.00 0.00 3.06
638 2933 1.673033 GCCAAGATATCCCCGATGACG 60.673 57.143 0.00 0.00 39.43 4.35
639 2934 1.618837 CCAAGATATCCCCGATGACGT 59.381 52.381 0.00 0.00 37.88 4.34
640 2935 2.610479 CCAAGATATCCCCGATGACGTG 60.610 54.545 0.00 0.00 37.88 4.49
641 2936 0.603569 AGATATCCCCGATGACGTGC 59.396 55.000 0.00 0.00 37.88 5.34
642 2937 0.317160 GATATCCCCGATGACGTGCA 59.683 55.000 0.00 0.00 37.88 4.57
643 2938 0.976641 ATATCCCCGATGACGTGCAT 59.023 50.000 0.00 0.00 40.77 3.96
656 2951 2.112928 TGCATCGTGGGCACAGTT 59.887 55.556 0.00 0.00 36.11 3.16
657 2952 1.373059 TGCATCGTGGGCACAGTTA 59.627 52.632 0.00 0.00 36.11 2.24
658 2953 0.673333 TGCATCGTGGGCACAGTTAG 60.673 55.000 0.00 0.00 36.11 2.34
659 2954 0.391130 GCATCGTGGGCACAGTTAGA 60.391 55.000 0.00 0.00 0.00 2.10
660 2955 1.359848 CATCGTGGGCACAGTTAGAC 58.640 55.000 0.00 0.00 0.00 2.59
661 2956 0.249398 ATCGTGGGCACAGTTAGACC 59.751 55.000 0.00 0.00 0.00 3.85
662 2957 1.375523 CGTGGGCACAGTTAGACCC 60.376 63.158 0.00 0.00 43.14 4.46
663 2958 1.002502 GTGGGCACAGTTAGACCCC 60.003 63.158 0.00 0.00 42.07 4.95
664 2959 1.462432 TGGGCACAGTTAGACCCCA 60.462 57.895 0.00 0.00 43.19 4.96
665 2960 1.299976 GGGCACAGTTAGACCCCAG 59.700 63.158 0.00 0.00 36.24 4.45
666 2961 1.198759 GGGCACAGTTAGACCCCAGA 61.199 60.000 0.00 0.00 36.24 3.86
667 2962 0.912486 GGCACAGTTAGACCCCAGAT 59.088 55.000 0.00 0.00 0.00 2.90
668 2963 1.407437 GGCACAGTTAGACCCCAGATG 60.407 57.143 0.00 0.00 0.00 2.90
669 2964 1.407437 GCACAGTTAGACCCCAGATGG 60.407 57.143 0.00 0.00 0.00 3.51
670 2965 2.187958 CACAGTTAGACCCCAGATGGA 58.812 52.381 0.00 0.00 37.39 3.41
671 2966 2.093447 CACAGTTAGACCCCAGATGGAC 60.093 54.545 0.00 0.00 37.39 4.02
672 2967 2.187958 CAGTTAGACCCCAGATGGACA 58.812 52.381 0.00 0.00 37.39 4.02
673 2968 2.571653 CAGTTAGACCCCAGATGGACAA 59.428 50.000 0.00 0.00 37.39 3.18
674 2969 2.572104 AGTTAGACCCCAGATGGACAAC 59.428 50.000 0.00 0.00 37.39 3.32
675 2970 2.572104 GTTAGACCCCAGATGGACAACT 59.428 50.000 0.00 0.00 37.39 3.16
676 2971 0.987294 AGACCCCAGATGGACAACTG 59.013 55.000 0.00 2.92 37.39 3.16
683 2978 2.969990 CAGATGGACAACTGGAGACTG 58.030 52.381 2.03 0.00 0.00 3.51
684 2979 1.905215 AGATGGACAACTGGAGACTGG 59.095 52.381 0.00 0.00 0.00 4.00
685 2980 0.326264 ATGGACAACTGGAGACTGGC 59.674 55.000 0.00 0.00 0.00 4.85
686 2981 1.053835 TGGACAACTGGAGACTGGCA 61.054 55.000 0.00 0.00 0.00 4.92
687 2982 0.321122 GGACAACTGGAGACTGGCAG 60.321 60.000 14.16 14.16 0.00 4.85
688 2983 0.321122 GACAACTGGAGACTGGCAGG 60.321 60.000 20.34 1.75 0.00 4.85
689 2984 0.764369 ACAACTGGAGACTGGCAGGA 60.764 55.000 20.34 0.00 0.00 3.86
690 2985 0.036577 CAACTGGAGACTGGCAGGAG 60.037 60.000 20.34 8.59 0.00 3.69
691 2986 1.835927 AACTGGAGACTGGCAGGAGC 61.836 60.000 20.34 7.80 41.10 4.70
702 2997 2.719376 GCAGGAGCCAAGTGTTTGA 58.281 52.632 0.00 0.00 36.36 2.69
703 2998 1.251251 GCAGGAGCCAAGTGTTTGAT 58.749 50.000 0.00 0.00 36.36 2.57
704 2999 1.068055 GCAGGAGCCAAGTGTTTGATG 60.068 52.381 0.00 0.00 36.36 3.07
705 3000 2.233271 CAGGAGCCAAGTGTTTGATGT 58.767 47.619 0.00 0.00 36.36 3.06
706 3001 2.227388 CAGGAGCCAAGTGTTTGATGTC 59.773 50.000 0.00 0.00 36.36 3.06
707 3002 1.197721 GGAGCCAAGTGTTTGATGTCG 59.802 52.381 0.00 0.00 36.36 4.35
708 3003 0.593128 AGCCAAGTGTTTGATGTCGC 59.407 50.000 0.00 0.00 36.36 5.19
709 3004 0.387239 GCCAAGTGTTTGATGTCGCC 60.387 55.000 0.00 0.00 36.36 5.54
710 3005 0.240945 CCAAGTGTTTGATGTCGCCC 59.759 55.000 0.00 0.00 36.36 6.13
711 3006 1.238439 CAAGTGTTTGATGTCGCCCT 58.762 50.000 0.00 0.00 36.36 5.19
712 3007 1.608590 CAAGTGTTTGATGTCGCCCTT 59.391 47.619 0.00 0.00 36.36 3.95
713 3008 1.981256 AGTGTTTGATGTCGCCCTTT 58.019 45.000 0.00 0.00 0.00 3.11
714 3009 1.880027 AGTGTTTGATGTCGCCCTTTC 59.120 47.619 0.00 0.00 0.00 2.62
715 3010 0.871722 TGTTTGATGTCGCCCTTTCG 59.128 50.000 0.00 0.00 0.00 3.46
716 3011 0.168128 GTTTGATGTCGCCCTTTCGG 59.832 55.000 0.00 0.00 0.00 4.30
727 3022 2.466867 CCTTTCGGGATCCAACGTG 58.533 57.895 15.23 0.11 37.23 4.49
728 3023 0.036765 CCTTTCGGGATCCAACGTGA 60.037 55.000 15.23 0.00 37.23 4.35
729 3024 1.359848 CTTTCGGGATCCAACGTGAG 58.640 55.000 15.23 7.56 0.00 3.51
730 3025 0.036765 TTTCGGGATCCAACGTGAGG 60.037 55.000 15.23 0.00 0.00 3.86
731 3026 0.901114 TTCGGGATCCAACGTGAGGA 60.901 55.000 15.23 11.90 39.97 3.71
732 3027 1.141881 CGGGATCCAACGTGAGGAG 59.858 63.158 15.23 0.00 38.83 3.69
733 3028 1.605058 CGGGATCCAACGTGAGGAGT 61.605 60.000 15.23 4.61 38.83 3.85
734 3029 0.175989 GGGATCCAACGTGAGGAGTC 59.824 60.000 15.23 11.49 38.83 3.36
735 3030 1.187087 GGATCCAACGTGAGGAGTCT 58.813 55.000 6.95 0.00 38.83 3.24
736 3031 1.135333 GGATCCAACGTGAGGAGTCTC 59.865 57.143 6.95 8.07 38.83 3.36
737 3032 2.096248 GATCCAACGTGAGGAGTCTCT 58.904 52.381 14.45 0.00 40.58 3.10
738 3033 1.535833 TCCAACGTGAGGAGTCTCTC 58.464 55.000 5.93 0.00 40.58 3.20
752 3047 2.087646 GTCTCTCCATGAGGCAAAACC 58.912 52.381 0.00 0.00 46.15 3.27
768 3063 5.712446 GGCAAAACCTCTATTTTTCCTCTCT 59.288 40.000 0.00 0.00 33.56 3.10
818 3118 5.162870 TGCTACTCCCTTCAAGGATAGGATA 60.163 44.000 4.43 0.00 37.67 2.59
823 3123 8.997301 ACTCCCTTCAAGGATAGGATATTTAT 57.003 34.615 4.43 0.00 37.67 1.40
824 3124 9.411848 ACTCCCTTCAAGGATAGGATATTTATT 57.588 33.333 4.43 0.00 37.67 1.40
868 3173 2.035617 ATTAACTCCATGCGCGCGTG 62.036 55.000 39.38 39.38 0.00 5.34
889 3194 4.563976 GTGTGTAATTGGCATGCAGATTTC 59.436 41.667 21.36 15.55 0.00 2.17
934 3239 4.211374 CGCCCCTATAAGATTTGTTTCTCG 59.789 45.833 0.00 0.00 0.00 4.04
992 3298 0.251916 CTCCATGCCCTCCGTTACAA 59.748 55.000 0.00 0.00 0.00 2.41
998 3304 1.530283 CCCTCCGTTACAATCCCCC 59.470 63.158 0.00 0.00 0.00 5.40
1047 3353 2.892425 GCACAATCTCCGGCCTCG 60.892 66.667 0.00 0.00 0.00 4.63
1182 3500 4.248842 CCCAGCGTGTCCACCACA 62.249 66.667 0.00 0.00 44.78 4.17
1184 3502 2.253758 CCAGCGTGTCCACCACAAG 61.254 63.158 0.00 0.00 44.78 3.16
1326 3650 2.159841 TCGAAAACGAGAGGTACGTACG 60.160 50.000 18.98 15.01 43.16 3.67
1543 3871 5.393243 CCAGTTCAAGAGGTACTACTAGCAC 60.393 48.000 0.00 0.00 41.55 4.40
1773 4181 2.639347 TGGTTCATGAAGCTCCTCAAGA 59.361 45.455 31.37 11.61 39.38 3.02
1844 4252 1.811679 GCCCTACAGCTCGCAGAAC 60.812 63.158 0.00 0.00 34.09 3.01
2055 4469 3.303495 CGCAGTACGATTTTACTGGAGTG 59.697 47.826 11.54 0.00 46.27 3.51
2056 4470 3.617263 GCAGTACGATTTTACTGGAGTGG 59.383 47.826 11.54 0.00 46.27 4.00
2080 4495 1.133199 TGAATTTGGTTGCAGGGACCT 60.133 47.619 7.54 0.00 38.04 3.85
2563 4978 1.374758 CGCCTTCTCAGTGGTGGTC 60.375 63.158 0.00 0.00 0.00 4.02
2592 5007 1.829222 GGACATACCGGACCTCAAGAA 59.171 52.381 9.46 0.00 0.00 2.52
2710 5125 6.328410 TCAGGTATGATCTCTTCCACATGATT 59.672 38.462 0.00 0.00 29.45 2.57
2878 5293 2.540383 AGCCTCTGTCACCATTGAGTA 58.460 47.619 0.00 0.00 30.10 2.59
2882 5297 3.006859 CCTCTGTCACCATTGAGTACACA 59.993 47.826 0.00 0.00 30.10 3.72
2904 5319 4.988029 AGTGACTACTGACAAGTACTCCT 58.012 43.478 0.00 0.00 37.88 3.69
2954 5386 7.710766 ACGCTCTTATATTAGTTTACAAGGC 57.289 36.000 0.00 0.00 0.00 4.35
2985 5417 4.664392 AGTAGTACAAGTGGAGTAGCACT 58.336 43.478 2.52 0.00 0.00 4.40
2989 5421 3.895232 ACAAGTGGAGTAGCACTATGG 57.105 47.619 0.00 0.00 0.00 2.74
3012 5444 8.402798 TGGCTATTCTACTTGACATTGAAAAA 57.597 30.769 0.00 0.00 0.00 1.94
3029 5461 8.840867 CATTGAAAAACTTAATTCGAGCACTAC 58.159 33.333 0.00 0.00 0.00 2.73
3053 5485 6.782494 ACATGAACCTCTTTACAAGGGATTTT 59.218 34.615 0.00 0.00 38.29 1.82
3113 5545 5.283953 CGGTATCAGTCGATCGTATGATTTG 59.716 44.000 29.11 19.94 34.09 2.32
3116 5548 5.243426 TCAGTCGATCGTATGATTTGTGA 57.757 39.130 15.94 3.50 34.09 3.58
3161 5594 2.047560 AACGCCGGCAGTTACTCC 60.048 61.111 28.98 0.00 0.00 3.85
3162 5595 2.775032 GAACGCCGGCAGTTACTCCA 62.775 60.000 28.09 0.00 31.14 3.86
3164 5597 2.345991 GCCGGCAGTTACTCCACA 59.654 61.111 24.80 0.00 0.00 4.17
3165 5598 1.741770 GCCGGCAGTTACTCCACAG 60.742 63.158 24.80 0.00 0.00 3.66
3166 5599 1.671742 CCGGCAGTTACTCCACAGT 59.328 57.895 0.00 0.00 36.55 3.55
3167 5600 0.389948 CCGGCAGTTACTCCACAGTC 60.390 60.000 0.00 0.00 33.62 3.51
3168 5601 0.389948 CGGCAGTTACTCCACAGTCC 60.390 60.000 0.00 0.00 33.62 3.85
3169 5602 0.685097 GGCAGTTACTCCACAGTCCA 59.315 55.000 0.00 0.00 33.62 4.02
3170 5603 1.608283 GGCAGTTACTCCACAGTCCAC 60.608 57.143 0.00 0.00 33.62 4.02
3171 5604 1.070134 GCAGTTACTCCACAGTCCACA 59.930 52.381 0.00 0.00 33.62 4.17
3172 5605 2.289694 GCAGTTACTCCACAGTCCACAT 60.290 50.000 0.00 0.00 33.62 3.21
3173 5606 3.589988 CAGTTACTCCACAGTCCACATC 58.410 50.000 0.00 0.00 33.62 3.06
3174 5607 2.567615 AGTTACTCCACAGTCCACATCC 59.432 50.000 0.00 0.00 33.62 3.51
3175 5608 1.568504 TACTCCACAGTCCACATCCC 58.431 55.000 0.00 0.00 33.62 3.85
3176 5609 1.201429 ACTCCACAGTCCACATCCCC 61.201 60.000 0.00 0.00 0.00 4.81
3177 5610 1.151921 TCCACAGTCCACATCCCCA 60.152 57.895 0.00 0.00 0.00 4.96
3178 5611 0.770166 TCCACAGTCCACATCCCCAA 60.770 55.000 0.00 0.00 0.00 4.12
3179 5612 0.112218 CCACAGTCCACATCCCCAAA 59.888 55.000 0.00 0.00 0.00 3.28
3180 5613 1.538047 CACAGTCCACATCCCCAAAG 58.462 55.000 0.00 0.00 0.00 2.77
3181 5614 0.405585 ACAGTCCACATCCCCAAAGG 59.594 55.000 0.00 0.00 0.00 3.11
3329 5762 1.118965 TCCTGTTGAAGGCGTCCTGA 61.119 55.000 0.00 0.00 46.92 3.86
3466 5899 1.072331 AGAGCAACTCGATTGTTGGGT 59.928 47.619 16.53 5.81 45.19 4.51
3647 6088 1.136891 GCCATGCAATTGGGAGGTTAC 59.863 52.381 7.72 0.00 37.24 2.50
3668 6116 4.916183 ACTTTTCCTCCCAAGAAGATGAG 58.084 43.478 0.00 0.00 0.00 2.90
3687 6136 1.163554 GGAAGCCAAGAACTCTGCTG 58.836 55.000 0.00 0.00 33.59 4.41
3698 6147 1.288127 CTCTGCTGGCAAAAGCCAC 59.712 57.895 4.86 3.89 42.83 5.01
3702 6151 1.153958 GCTGGCAAAAGCCACGATC 60.154 57.895 4.86 0.00 37.20 3.69
3709 6158 2.855963 GCAAAAGCCACGATCATGAATG 59.144 45.455 0.00 0.00 0.00 2.67
3710 6159 3.441163 CAAAAGCCACGATCATGAATGG 58.559 45.455 16.15 16.15 35.17 3.16
3711 6160 2.715749 AAGCCACGATCATGAATGGA 57.284 45.000 22.02 0.00 33.80 3.41
3712 6161 2.715749 AGCCACGATCATGAATGGAA 57.284 45.000 22.02 0.00 33.80 3.53
3713 6162 3.003394 AGCCACGATCATGAATGGAAA 57.997 42.857 22.02 0.00 33.80 3.13
3714 6163 3.355378 AGCCACGATCATGAATGGAAAA 58.645 40.909 22.02 0.00 33.80 2.29
3715 6164 3.129287 AGCCACGATCATGAATGGAAAAC 59.871 43.478 22.02 8.82 33.80 2.43
3716 6165 3.683989 CCACGATCATGAATGGAAAACG 58.316 45.455 15.63 7.45 33.80 3.60
3717 6166 3.126858 CCACGATCATGAATGGAAAACGT 59.873 43.478 15.63 7.95 33.80 3.99
3718 6167 4.379394 CCACGATCATGAATGGAAAACGTT 60.379 41.667 15.63 0.00 33.80 3.99
3719 6168 5.153513 CACGATCATGAATGGAAAACGTTT 58.846 37.500 7.96 7.96 0.00 3.60
3720 6169 5.059587 CACGATCATGAATGGAAAACGTTTG 59.940 40.000 15.46 0.00 0.00 2.93
3721 6170 5.049060 ACGATCATGAATGGAAAACGTTTGA 60.049 36.000 15.46 5.11 0.00 2.69
3722 6171 5.855925 CGATCATGAATGGAAAACGTTTGAA 59.144 36.000 15.46 3.62 0.00 2.69
3723 6172 6.032775 CGATCATGAATGGAAAACGTTTGAAG 59.967 38.462 15.46 0.53 0.00 3.02
3724 6173 6.384258 TCATGAATGGAAAACGTTTGAAGA 57.616 33.333 15.46 0.00 0.00 2.87
3725 6174 6.205784 TCATGAATGGAAAACGTTTGAAGAC 58.794 36.000 15.46 5.95 0.00 3.01
3727 6176 3.619233 ATGGAAAACGTTTGAAGACGG 57.381 42.857 15.46 0.00 46.77 4.79
3728 6177 1.064357 TGGAAAACGTTTGAAGACGGC 59.936 47.619 15.46 0.00 46.77 5.68
3729 6178 1.382163 GAAAACGTTTGAAGACGGCG 58.618 50.000 15.46 4.80 46.77 6.46
3730 6179 0.590481 AAAACGTTTGAAGACGGCGC 60.590 50.000 15.46 0.00 46.77 6.53
3731 6180 2.689575 AAACGTTTGAAGACGGCGCG 62.690 55.000 13.81 0.00 46.77 6.86
3733 6182 4.736631 GTTTGAAGACGGCGCGCC 62.737 66.667 39.82 39.82 0.00 6.53
3754 6203 3.607987 CGAAGCTTCGCCGCGTAG 61.608 66.667 33.46 14.41 44.26 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.815856 TTTGGCTGAGTTCATTTGCAA 57.184 38.095 0.00 0.00 0.00 4.08
41 42 3.321396 TGATTTGGCTGAGTTCATTTGCA 59.679 39.130 0.00 0.00 0.00 4.08
42 43 3.916761 TGATTTGGCTGAGTTCATTTGC 58.083 40.909 0.00 0.00 0.00 3.68
43 44 5.805486 CAGATGATTTGGCTGAGTTCATTTG 59.195 40.000 0.00 0.00 0.00 2.32
44 45 5.479375 ACAGATGATTTGGCTGAGTTCATTT 59.521 36.000 0.00 0.00 33.94 2.32
45 46 5.014858 ACAGATGATTTGGCTGAGTTCATT 58.985 37.500 0.00 0.00 33.94 2.57
46 47 4.597004 ACAGATGATTTGGCTGAGTTCAT 58.403 39.130 0.00 0.00 33.94 2.57
47 48 4.025040 ACAGATGATTTGGCTGAGTTCA 57.975 40.909 0.00 0.00 33.94 3.18
48 49 4.730657 CAACAGATGATTTGGCTGAGTTC 58.269 43.478 0.00 0.00 33.94 3.01
49 50 3.057033 GCAACAGATGATTTGGCTGAGTT 60.057 43.478 0.00 0.00 33.94 3.01
50 51 2.490903 GCAACAGATGATTTGGCTGAGT 59.509 45.455 0.00 0.00 33.94 3.41
51 52 2.490509 TGCAACAGATGATTTGGCTGAG 59.509 45.455 0.00 0.00 33.94 3.35
52 53 2.229543 GTGCAACAGATGATTTGGCTGA 59.770 45.455 0.00 0.00 36.32 4.26
53 54 2.602878 GTGCAACAGATGATTTGGCTG 58.397 47.619 0.00 0.00 36.32 4.85
54 55 1.547372 GGTGCAACAGATGATTTGGCT 59.453 47.619 0.00 0.00 39.98 4.75
55 56 1.404583 GGGTGCAACAGATGATTTGGC 60.405 52.381 3.06 0.00 39.98 4.52
56 57 1.894466 TGGGTGCAACAGATGATTTGG 59.106 47.619 3.06 0.00 39.98 3.28
57 58 3.446161 AGATGGGTGCAACAGATGATTTG 59.554 43.478 3.06 0.00 39.98 2.32
58 59 3.446161 CAGATGGGTGCAACAGATGATTT 59.554 43.478 3.06 0.00 39.98 2.17
59 60 3.021695 CAGATGGGTGCAACAGATGATT 58.978 45.455 3.06 0.00 39.98 2.57
60 61 2.651455 CAGATGGGTGCAACAGATGAT 58.349 47.619 3.06 0.00 39.98 2.45
61 62 1.951895 GCAGATGGGTGCAACAGATGA 60.952 52.381 3.06 0.00 43.41 2.92
62 63 0.454600 GCAGATGGGTGCAACAGATG 59.545 55.000 3.06 3.53 43.41 2.90
63 64 0.330604 AGCAGATGGGTGCAACAGAT 59.669 50.000 3.06 0.00 46.60 2.90
64 65 0.607217 CAGCAGATGGGTGCAACAGA 60.607 55.000 3.06 0.00 46.60 3.41
65 66 1.880894 CAGCAGATGGGTGCAACAG 59.119 57.895 3.06 0.00 46.60 3.16
66 67 4.084265 CAGCAGATGGGTGCAACA 57.916 55.556 3.06 0.00 46.60 3.33
105 106 4.178956 TGCCAAAACCTCCTTAAGAACT 57.821 40.909 3.36 0.00 0.00 3.01
129 130 0.539986 GTGATCGGGAAGCCCACTAA 59.460 55.000 3.03 0.00 45.83 2.24
130 131 1.335132 GGTGATCGGGAAGCCCACTA 61.335 60.000 3.03 0.00 45.83 2.74
131 132 2.670148 GGTGATCGGGAAGCCCACT 61.670 63.158 3.03 0.00 45.83 4.00
132 133 2.124695 GGTGATCGGGAAGCCCAC 60.125 66.667 3.03 0.00 45.83 4.61
231 1793 2.681778 ACTGCTCTACGCCCTGCT 60.682 61.111 0.00 0.00 38.05 4.24
264 1826 1.024271 CGAAATTGGGGATCGTGCAT 58.976 50.000 0.00 0.00 0.00 3.96
436 1998 2.872557 CAACCATGCCAGCGTGAG 59.127 61.111 13.38 6.17 35.09 3.51
453 2015 2.870372 CAGGGTTTAGCGTGCTGC 59.130 61.111 4.25 0.00 46.98 5.25
454 2016 1.308069 ATGCAGGGTTTAGCGTGCTG 61.308 55.000 22.06 4.32 36.84 4.41
455 2017 1.002134 ATGCAGGGTTTAGCGTGCT 60.002 52.632 22.06 0.00 36.84 4.40
457 2019 1.131126 CAAGATGCAGGGTTTAGCGTG 59.869 52.381 0.00 0.00 0.00 5.34
459 2021 0.734889 CCAAGATGCAGGGTTTAGCG 59.265 55.000 0.00 0.00 0.00 4.26
460 2022 2.019984 CTCCAAGATGCAGGGTTTAGC 58.980 52.381 0.00 0.00 0.00 3.09
461 2023 2.019984 GCTCCAAGATGCAGGGTTTAG 58.980 52.381 0.00 0.00 0.00 1.85
462 2024 1.340991 GGCTCCAAGATGCAGGGTTTA 60.341 52.381 0.00 0.00 0.00 2.01
463 2025 0.613012 GGCTCCAAGATGCAGGGTTT 60.613 55.000 0.00 0.00 0.00 3.27
464 2026 1.000396 GGCTCCAAGATGCAGGGTT 60.000 57.895 0.00 0.00 0.00 4.11
465 2027 2.679716 GGCTCCAAGATGCAGGGT 59.320 61.111 0.00 0.00 0.00 4.34
466 2028 2.123982 GGGCTCCAAGATGCAGGG 60.124 66.667 0.00 0.00 0.00 4.45
468 2030 1.453379 CTGGGGCTCCAAGATGCAG 60.453 63.158 6.84 0.00 43.51 4.41
469 2031 1.918467 CTCTGGGGCTCCAAGATGCA 61.918 60.000 6.84 0.00 43.51 3.96
471 2033 0.179936 GTCTCTGGGGCTCCAAGATG 59.820 60.000 6.84 0.00 43.51 2.90
472 2034 0.043940 AGTCTCTGGGGCTCCAAGAT 59.956 55.000 6.84 1.05 43.51 2.40
473 2035 0.616111 GAGTCTCTGGGGCTCCAAGA 60.616 60.000 6.84 10.15 43.51 3.02
474 2036 1.621672 GGAGTCTCTGGGGCTCCAAG 61.622 65.000 23.10 7.66 45.93 3.61
475 2037 1.613630 GGAGTCTCTGGGGCTCCAA 60.614 63.158 23.10 0.00 45.93 3.53
476 2038 2.039624 GGAGTCTCTGGGGCTCCA 59.960 66.667 23.10 4.49 45.93 3.86
477 2039 1.760480 GAGGAGTCTCTGGGGCTCC 60.760 68.421 20.68 20.68 46.75 4.70
478 2040 3.948702 GAGGAGTCTCTGGGGCTC 58.051 66.667 0.00 0.00 37.07 4.70
487 2049 0.709992 AGAAGGCCAGAGAGGAGTCT 59.290 55.000 5.01 0.00 41.22 3.24
490 2052 1.336632 CCCAGAAGGCCAGAGAGGAG 61.337 65.000 5.01 0.00 41.22 3.69
492 2054 1.306482 TCCCAGAAGGCCAGAGAGG 60.306 63.158 5.01 0.00 41.84 3.69
493 2055 1.904032 GTCCCAGAAGGCCAGAGAG 59.096 63.158 5.01 0.00 34.51 3.20
494 2056 1.984570 CGTCCCAGAAGGCCAGAGA 60.985 63.158 5.01 0.00 34.51 3.10
495 2057 1.984570 TCGTCCCAGAAGGCCAGAG 60.985 63.158 5.01 0.00 34.51 3.35
496 2058 2.119611 TCGTCCCAGAAGGCCAGA 59.880 61.111 5.01 0.00 34.51 3.86
497 2059 1.903877 ATGTCGTCCCAGAAGGCCAG 61.904 60.000 5.01 0.00 34.51 4.85
498 2060 1.488705 AATGTCGTCCCAGAAGGCCA 61.489 55.000 5.01 0.00 34.51 5.36
499 2061 1.026718 CAATGTCGTCCCAGAAGGCC 61.027 60.000 0.00 0.00 34.51 5.19
500 2062 0.321653 ACAATGTCGTCCCAGAAGGC 60.322 55.000 0.00 0.00 34.51 4.35
501 2063 1.276421 AGACAATGTCGTCCCAGAAGG 59.724 52.381 7.83 0.00 37.67 3.46
502 2064 2.232452 AGAGACAATGTCGTCCCAGAAG 59.768 50.000 7.83 0.00 37.67 2.85
503 2065 2.029020 CAGAGACAATGTCGTCCCAGAA 60.029 50.000 7.83 0.00 37.67 3.02
504 2066 1.546029 CAGAGACAATGTCGTCCCAGA 59.454 52.381 7.83 0.00 37.67 3.86
505 2067 2.001812 CAGAGACAATGTCGTCCCAG 57.998 55.000 7.83 0.00 37.67 4.45
507 2069 1.078759 CGCAGAGACAATGTCGTCCC 61.079 60.000 7.83 0.00 37.67 4.46
508 2070 0.109272 TCGCAGAGACAATGTCGTCC 60.109 55.000 7.83 1.87 37.67 4.79
526 2821 0.243907 TGGAGTTGAGCGCTGTAGTC 59.756 55.000 18.48 14.55 0.00 2.59
529 2824 0.037326 CCTTGGAGTTGAGCGCTGTA 60.037 55.000 18.48 0.00 0.00 2.74
532 2827 2.348998 CCCTTGGAGTTGAGCGCT 59.651 61.111 11.27 11.27 0.00 5.92
534 2829 0.035056 AATCCCCTTGGAGTTGAGCG 60.035 55.000 0.00 0.00 46.08 5.03
537 2832 3.388024 CGATCTAATCCCCTTGGAGTTGA 59.612 47.826 0.00 0.00 46.08 3.18
540 2835 1.694696 GCGATCTAATCCCCTTGGAGT 59.305 52.381 0.00 0.00 46.08 3.85
543 2838 4.351874 TTTAGCGATCTAATCCCCTTGG 57.648 45.455 0.00 0.00 34.96 3.61
544 2839 4.697352 CCATTTAGCGATCTAATCCCCTTG 59.303 45.833 0.00 0.00 34.96 3.61
547 2842 4.254492 GACCATTTAGCGATCTAATCCCC 58.746 47.826 0.00 0.00 34.96 4.81
550 2845 5.784177 TCAGGACCATTTAGCGATCTAATC 58.216 41.667 0.00 0.00 34.96 1.75
551 2846 5.808366 TCAGGACCATTTAGCGATCTAAT 57.192 39.130 0.00 0.00 34.96 1.73
554 2849 3.305676 CGATCAGGACCATTTAGCGATCT 60.306 47.826 0.00 0.00 0.00 2.75
555 2850 2.989840 CGATCAGGACCATTTAGCGATC 59.010 50.000 0.00 0.00 0.00 3.69
556 2851 2.365617 ACGATCAGGACCATTTAGCGAT 59.634 45.455 0.00 0.00 0.00 4.58
557 2852 1.754803 ACGATCAGGACCATTTAGCGA 59.245 47.619 0.00 0.00 0.00 4.93
558 2853 1.860950 CACGATCAGGACCATTTAGCG 59.139 52.381 0.00 0.00 0.00 4.26
560 2855 3.118775 TCCACACGATCAGGACCATTTAG 60.119 47.826 0.00 0.00 0.00 1.85
561 2856 2.835156 TCCACACGATCAGGACCATTTA 59.165 45.455 0.00 0.00 0.00 1.40
562 2857 1.628340 TCCACACGATCAGGACCATTT 59.372 47.619 0.00 0.00 0.00 2.32
563 2858 1.066143 GTCCACACGATCAGGACCATT 60.066 52.381 10.82 0.00 44.72 3.16
564 2859 0.537188 GTCCACACGATCAGGACCAT 59.463 55.000 10.82 0.00 44.72 3.55
565 2860 1.972198 GTCCACACGATCAGGACCA 59.028 57.895 10.82 0.00 44.72 4.02
569 2864 0.891373 ACAGAGTCCACACGATCAGG 59.109 55.000 0.00 0.00 0.00 3.86
570 2865 1.403382 CCACAGAGTCCACACGATCAG 60.403 57.143 0.00 0.00 0.00 2.90
571 2866 0.603065 CCACAGAGTCCACACGATCA 59.397 55.000 0.00 0.00 0.00 2.92
572 2867 0.737715 GCCACAGAGTCCACACGATC 60.738 60.000 0.00 0.00 0.00 3.69
573 2868 1.188219 AGCCACAGAGTCCACACGAT 61.188 55.000 0.00 0.00 0.00 3.73
575 2870 0.109086 CTAGCCACAGAGTCCACACG 60.109 60.000 0.00 0.00 0.00 4.49
578 2873 1.402984 CGTTCTAGCCACAGAGTCCAC 60.403 57.143 0.00 0.00 0.00 4.02
579 2874 0.888619 CGTTCTAGCCACAGAGTCCA 59.111 55.000 0.00 0.00 0.00 4.02
580 2875 0.173708 CCGTTCTAGCCACAGAGTCC 59.826 60.000 0.00 0.00 0.00 3.85
581 2876 1.174783 TCCGTTCTAGCCACAGAGTC 58.825 55.000 0.00 0.00 0.00 3.36
582 2877 1.272769 GTTCCGTTCTAGCCACAGAGT 59.727 52.381 0.00 0.00 0.00 3.24
583 2878 1.272490 TGTTCCGTTCTAGCCACAGAG 59.728 52.381 0.00 0.00 0.00 3.35
584 2879 1.334160 TGTTCCGTTCTAGCCACAGA 58.666 50.000 0.00 0.00 0.00 3.41
586 2881 1.689813 TCTTGTTCCGTTCTAGCCACA 59.310 47.619 0.00 0.00 0.00 4.17
589 2884 6.679327 AAATTATCTTGTTCCGTTCTAGCC 57.321 37.500 0.00 0.00 0.00 3.93
590 2885 6.900299 CGAAAATTATCTTGTTCCGTTCTAGC 59.100 38.462 0.00 0.00 0.00 3.42
591 2886 8.108782 GTCGAAAATTATCTTGTTCCGTTCTAG 58.891 37.037 0.00 0.00 0.00 2.43
592 2887 7.201376 CGTCGAAAATTATCTTGTTCCGTTCTA 60.201 37.037 0.00 0.00 0.00 2.10
593 2888 6.400727 CGTCGAAAATTATCTTGTTCCGTTCT 60.401 38.462 0.00 0.00 0.00 3.01
594 2889 5.726679 CGTCGAAAATTATCTTGTTCCGTTC 59.273 40.000 0.00 0.00 0.00 3.95
595 2890 5.614760 CGTCGAAAATTATCTTGTTCCGTT 58.385 37.500 0.00 0.00 0.00 4.44
596 2891 4.435121 GCGTCGAAAATTATCTTGTTCCGT 60.435 41.667 0.00 0.00 0.00 4.69
597 2892 4.019867 GCGTCGAAAATTATCTTGTTCCG 58.980 43.478 0.00 0.00 0.00 4.30
598 2893 4.142773 TGGCGTCGAAAATTATCTTGTTCC 60.143 41.667 0.00 0.00 0.00 3.62
599 2894 4.965062 TGGCGTCGAAAATTATCTTGTTC 58.035 39.130 0.00 0.00 0.00 3.18
600 2895 5.180492 TCTTGGCGTCGAAAATTATCTTGTT 59.820 36.000 0.00 0.00 0.00 2.83
601 2896 4.693566 TCTTGGCGTCGAAAATTATCTTGT 59.306 37.500 0.00 0.00 0.00 3.16
603 2898 7.095187 GGATATCTTGGCGTCGAAAATTATCTT 60.095 37.037 2.05 0.00 0.00 2.40
604 2899 6.369065 GGATATCTTGGCGTCGAAAATTATCT 59.631 38.462 2.05 0.00 0.00 1.98
605 2900 6.402226 GGGATATCTTGGCGTCGAAAATTATC 60.402 42.308 2.05 0.22 0.00 1.75
606 2901 5.411669 GGGATATCTTGGCGTCGAAAATTAT 59.588 40.000 2.05 0.00 0.00 1.28
607 2902 4.753107 GGGATATCTTGGCGTCGAAAATTA 59.247 41.667 2.05 0.00 0.00 1.40
608 2903 3.564225 GGGATATCTTGGCGTCGAAAATT 59.436 43.478 2.05 0.00 0.00 1.82
609 2904 3.139077 GGGATATCTTGGCGTCGAAAAT 58.861 45.455 2.05 0.00 0.00 1.82
610 2905 2.557317 GGGATATCTTGGCGTCGAAAA 58.443 47.619 2.05 0.00 0.00 2.29
611 2906 1.202604 GGGGATATCTTGGCGTCGAAA 60.203 52.381 2.05 0.00 0.00 3.46
612 2907 0.391597 GGGGATATCTTGGCGTCGAA 59.608 55.000 2.05 0.00 0.00 3.71
613 2908 1.802337 CGGGGATATCTTGGCGTCGA 61.802 60.000 2.05 0.00 0.00 4.20
614 2909 1.372997 CGGGGATATCTTGGCGTCG 60.373 63.158 2.05 0.00 0.00 5.12
615 2910 0.608640 ATCGGGGATATCTTGGCGTC 59.391 55.000 2.05 0.00 0.00 5.19
616 2911 0.321671 CATCGGGGATATCTTGGCGT 59.678 55.000 2.05 0.00 0.00 5.68
617 2912 0.608130 TCATCGGGGATATCTTGGCG 59.392 55.000 2.05 0.00 0.00 5.69
618 2913 1.673033 CGTCATCGGGGATATCTTGGC 60.673 57.143 2.05 0.00 0.00 4.52
619 2914 1.618837 ACGTCATCGGGGATATCTTGG 59.381 52.381 2.05 0.00 41.85 3.61
620 2915 2.677199 CACGTCATCGGGGATATCTTG 58.323 52.381 2.05 0.00 41.85 3.02
621 2916 1.000955 GCACGTCATCGGGGATATCTT 59.999 52.381 2.05 0.00 41.24 2.40
622 2917 0.603569 GCACGTCATCGGGGATATCT 59.396 55.000 2.05 0.00 41.24 1.98
623 2918 0.317160 TGCACGTCATCGGGGATATC 59.683 55.000 0.00 0.00 41.24 1.63
624 2919 2.436521 TGCACGTCATCGGGGATAT 58.563 52.632 0.00 0.00 41.24 1.63
625 2920 3.942601 TGCACGTCATCGGGGATA 58.057 55.556 0.00 0.00 41.24 2.59
626 2921 3.230284 ATGCACGTCATCGGGGAT 58.770 55.556 0.00 0.00 45.64 3.85
627 2922 2.499205 GATGCACGTCATCGGGGA 59.501 61.111 10.73 0.00 45.98 4.81
639 2934 0.673333 CTAACTGTGCCCACGATGCA 60.673 55.000 0.00 0.00 36.12 3.96
640 2935 0.391130 TCTAACTGTGCCCACGATGC 60.391 55.000 0.00 0.00 0.00 3.91
641 2936 1.359848 GTCTAACTGTGCCCACGATG 58.640 55.000 0.00 0.00 0.00 3.84
642 2937 0.249398 GGTCTAACTGTGCCCACGAT 59.751 55.000 0.00 0.00 0.00 3.73
643 2938 1.669440 GGTCTAACTGTGCCCACGA 59.331 57.895 0.00 0.00 0.00 4.35
644 2939 1.375523 GGGTCTAACTGTGCCCACG 60.376 63.158 0.00 0.00 40.76 4.94
645 2940 1.002502 GGGGTCTAACTGTGCCCAC 60.003 63.158 10.65 0.00 42.79 4.61
646 2941 1.462432 TGGGGTCTAACTGTGCCCA 60.462 57.895 10.65 0.00 42.79 5.36
647 2942 1.198759 TCTGGGGTCTAACTGTGCCC 61.199 60.000 0.00 0.00 40.35 5.36
648 2943 0.912486 ATCTGGGGTCTAACTGTGCC 59.088 55.000 0.00 0.00 0.00 5.01
649 2944 1.407437 CCATCTGGGGTCTAACTGTGC 60.407 57.143 0.00 0.00 0.00 4.57
650 2945 2.093447 GTCCATCTGGGGTCTAACTGTG 60.093 54.545 0.00 0.00 37.22 3.66
651 2946 2.188817 GTCCATCTGGGGTCTAACTGT 58.811 52.381 0.00 0.00 37.22 3.55
652 2947 2.187958 TGTCCATCTGGGGTCTAACTG 58.812 52.381 0.00 0.00 37.22 3.16
653 2948 2.572104 GTTGTCCATCTGGGGTCTAACT 59.428 50.000 0.00 0.00 37.22 2.24
654 2949 2.572104 AGTTGTCCATCTGGGGTCTAAC 59.428 50.000 0.00 0.00 37.22 2.34
655 2950 2.571653 CAGTTGTCCATCTGGGGTCTAA 59.428 50.000 0.00 0.00 37.22 2.10
656 2951 2.187958 CAGTTGTCCATCTGGGGTCTA 58.812 52.381 0.00 0.00 37.22 2.59
657 2952 0.987294 CAGTTGTCCATCTGGGGTCT 59.013 55.000 0.00 0.00 37.22 3.85
658 2953 0.035056 CCAGTTGTCCATCTGGGGTC 60.035 60.000 14.15 0.00 45.11 4.46
659 2954 2.078452 CCAGTTGTCCATCTGGGGT 58.922 57.895 14.15 0.00 45.11 4.95
663 2958 2.354503 CCAGTCTCCAGTTGTCCATCTG 60.355 54.545 0.00 0.00 0.00 2.90
664 2959 1.905215 CCAGTCTCCAGTTGTCCATCT 59.095 52.381 0.00 0.00 0.00 2.90
665 2960 1.677217 GCCAGTCTCCAGTTGTCCATC 60.677 57.143 0.00 0.00 0.00 3.51
666 2961 0.326264 GCCAGTCTCCAGTTGTCCAT 59.674 55.000 0.00 0.00 0.00 3.41
667 2962 1.053835 TGCCAGTCTCCAGTTGTCCA 61.054 55.000 0.00 0.00 0.00 4.02
668 2963 0.321122 CTGCCAGTCTCCAGTTGTCC 60.321 60.000 0.00 0.00 0.00 4.02
669 2964 0.321122 CCTGCCAGTCTCCAGTTGTC 60.321 60.000 0.00 0.00 0.00 3.18
670 2965 0.764369 TCCTGCCAGTCTCCAGTTGT 60.764 55.000 0.00 0.00 0.00 3.32
671 2966 0.036577 CTCCTGCCAGTCTCCAGTTG 60.037 60.000 0.00 0.00 0.00 3.16
672 2967 1.835927 GCTCCTGCCAGTCTCCAGTT 61.836 60.000 0.00 0.00 0.00 3.16
673 2968 2.289532 GCTCCTGCCAGTCTCCAGT 61.290 63.158 0.00 0.00 0.00 4.00
674 2969 2.583520 GCTCCTGCCAGTCTCCAG 59.416 66.667 0.00 0.00 0.00 3.86
684 2979 1.068055 CATCAAACACTTGGCTCCTGC 60.068 52.381 0.00 0.00 38.76 4.85
685 2980 2.227388 GACATCAAACACTTGGCTCCTG 59.773 50.000 0.00 0.00 33.01 3.86
686 2981 2.508526 GACATCAAACACTTGGCTCCT 58.491 47.619 0.00 0.00 33.01 3.69
687 2982 1.197721 CGACATCAAACACTTGGCTCC 59.802 52.381 0.00 0.00 33.01 4.70
688 2983 1.400242 GCGACATCAAACACTTGGCTC 60.400 52.381 0.00 0.00 33.01 4.70
689 2984 0.593128 GCGACATCAAACACTTGGCT 59.407 50.000 0.00 0.00 33.01 4.75
690 2985 0.387239 GGCGACATCAAACACTTGGC 60.387 55.000 0.00 0.00 33.01 4.52
691 2986 0.240945 GGGCGACATCAAACACTTGG 59.759 55.000 0.00 0.00 33.01 3.61
692 2987 1.238439 AGGGCGACATCAAACACTTG 58.762 50.000 0.00 0.00 0.00 3.16
693 2988 1.981256 AAGGGCGACATCAAACACTT 58.019 45.000 0.00 0.00 0.00 3.16
694 2989 1.880027 GAAAGGGCGACATCAAACACT 59.120 47.619 0.00 0.00 0.00 3.55
695 2990 1.399727 CGAAAGGGCGACATCAAACAC 60.400 52.381 0.00 0.00 0.00 3.32
696 2991 0.871722 CGAAAGGGCGACATCAAACA 59.128 50.000 0.00 0.00 0.00 2.83
697 2992 3.676091 CGAAAGGGCGACATCAAAC 57.324 52.632 0.00 0.00 0.00 2.93
710 3005 1.359848 CTCACGTTGGATCCCGAAAG 58.640 55.000 16.14 6.79 0.00 2.62
711 3006 0.036765 CCTCACGTTGGATCCCGAAA 60.037 55.000 16.14 0.00 0.00 3.46
712 3007 0.901114 TCCTCACGTTGGATCCCGAA 60.901 55.000 16.14 0.00 0.00 4.30
713 3008 1.304630 TCCTCACGTTGGATCCCGA 60.305 57.895 16.14 0.00 0.00 5.14
714 3009 1.141881 CTCCTCACGTTGGATCCCG 59.858 63.158 9.90 9.19 32.56 5.14
715 3010 0.175989 GACTCCTCACGTTGGATCCC 59.824 60.000 9.90 0.00 32.56 3.85
716 3011 1.135333 GAGACTCCTCACGTTGGATCC 59.865 57.143 4.20 4.20 39.24 3.36
717 3012 2.096248 AGAGACTCCTCACGTTGGATC 58.904 52.381 7.42 7.68 41.87 3.36
718 3013 2.096248 GAGAGACTCCTCACGTTGGAT 58.904 52.381 7.42 0.00 41.87 3.41
719 3014 1.535833 GAGAGACTCCTCACGTTGGA 58.464 55.000 6.84 6.84 41.87 3.53
720 3015 0.528470 GGAGAGACTCCTCACGTTGG 59.472 60.000 10.16 0.00 46.41 3.77
730 3025 6.383485 AGGTTTTGCCTCATGGAGAGACTC 62.383 50.000 0.00 0.00 46.96 3.36
731 3026 4.590590 AGGTTTTGCCTCATGGAGAGACT 61.591 47.826 0.00 0.00 46.96 3.24
732 3027 2.290577 AGGTTTTGCCTCATGGAGAGAC 60.291 50.000 0.00 0.00 46.96 3.36
733 3028 1.988107 AGGTTTTGCCTCATGGAGAGA 59.012 47.619 0.00 0.00 46.96 3.10
734 3029 2.503895 AGGTTTTGCCTCATGGAGAG 57.496 50.000 0.00 0.00 46.96 3.20
744 3039 5.712446 AGAGAGGAAAAATAGAGGTTTTGCC 59.288 40.000 1.62 1.62 44.10 4.52
745 3040 6.127869 GGAGAGAGGAAAAATAGAGGTTTTGC 60.128 42.308 0.00 0.00 36.77 3.68
746 3041 6.375736 GGGAGAGAGGAAAAATAGAGGTTTTG 59.624 42.308 0.00 0.00 32.02 2.44
747 3042 6.486056 GGGAGAGAGGAAAAATAGAGGTTTT 58.514 40.000 0.00 0.00 32.94 2.43
748 3043 5.044772 GGGGAGAGAGGAAAAATAGAGGTTT 60.045 44.000 0.00 0.00 0.00 3.27
749 3044 4.475381 GGGGAGAGAGGAAAAATAGAGGTT 59.525 45.833 0.00 0.00 0.00 3.50
750 3045 4.041464 GGGGAGAGAGGAAAAATAGAGGT 58.959 47.826 0.00 0.00 0.00 3.85
751 3046 4.302930 AGGGGAGAGAGGAAAAATAGAGG 58.697 47.826 0.00 0.00 0.00 3.69
752 3047 4.038642 CGAGGGGAGAGAGGAAAAATAGAG 59.961 50.000 0.00 0.00 0.00 2.43
753 3048 3.961408 CGAGGGGAGAGAGGAAAAATAGA 59.039 47.826 0.00 0.00 0.00 1.98
754 3049 3.070302 CCGAGGGGAGAGAGGAAAAATAG 59.930 52.174 0.00 0.00 34.06 1.73
755 3050 3.039011 CCGAGGGGAGAGAGGAAAAATA 58.961 50.000 0.00 0.00 34.06 1.40
756 3051 1.840635 CCGAGGGGAGAGAGGAAAAAT 59.159 52.381 0.00 0.00 34.06 1.82
757 3052 1.276622 CCGAGGGGAGAGAGGAAAAA 58.723 55.000 0.00 0.00 34.06 1.94
758 3053 2.992476 CCGAGGGGAGAGAGGAAAA 58.008 57.895 0.00 0.00 34.06 2.29
759 3054 4.787735 CCGAGGGGAGAGAGGAAA 57.212 61.111 0.00 0.00 34.06 3.13
831 3131 8.939929 GGAGTTAATTAGCGTAAACCTTTTAGT 58.060 33.333 0.00 0.00 0.00 2.24
832 3132 8.938906 TGGAGTTAATTAGCGTAAACCTTTTAG 58.061 33.333 0.00 0.00 0.00 1.85
868 3173 3.792956 CGAAATCTGCATGCCAATTACAC 59.207 43.478 16.68 8.85 0.00 2.90
889 3194 1.859080 GACACCTCTAATTTAGCCGCG 59.141 52.381 0.00 0.00 0.00 6.46
934 3239 1.755783 CAGCAGGAAATGGGAGGCC 60.756 63.158 0.00 0.00 0.00 5.19
960 3266 1.289160 CATGGAGGGAAGTCAGGGAA 58.711 55.000 0.00 0.00 0.00 3.97
992 3298 3.815407 GATGGCGGCATTGGGGGAT 62.815 63.158 26.52 0.59 0.00 3.85
998 3304 4.557605 GGTGCGATGGCGGCATTG 62.558 66.667 29.87 29.87 43.19 2.82
1078 3384 0.891373 CAGGAGGCGGATATCATCGT 59.109 55.000 4.83 0.00 0.00 3.73
1182 3500 0.110486 ACAATTCTCCCGTGTGCCTT 59.890 50.000 0.00 0.00 0.00 4.35
1184 3502 1.305930 GGACAATTCTCCCGTGTGCC 61.306 60.000 0.00 0.00 0.00 5.01
1276 3600 1.908066 GCGGACGTAGCTGGTTTTGG 61.908 60.000 8.09 0.00 0.00 3.28
1279 3603 2.431942 CGCGGACGTAGCTGGTTT 60.432 61.111 12.69 0.00 33.53 3.27
1501 3828 1.618837 TGGGAGACGTTCTTGAAGAGG 59.381 52.381 0.00 0.00 0.00 3.69
1543 3871 6.922247 AGAGATTTATGTTGAGCATGTCTG 57.078 37.500 0.00 0.00 38.47 3.51
1578 3909 7.007188 CGTTTAGTCACTCACTGAATTACGTAG 59.993 40.741 0.00 0.00 33.42 3.51
1581 3912 5.442909 GCGTTTAGTCACTCACTGAATTACG 60.443 44.000 0.00 0.00 37.10 3.18
1625 4033 5.068723 GCTCCTGGATGATGATCACATTTTT 59.931 40.000 0.00 0.00 36.82 1.94
1773 4181 2.048127 GACGAACGGCCTGCTCTT 60.048 61.111 0.00 0.00 0.00 2.85
1889 4297 0.681564 CTCTGAGGTAGACGGCCAGT 60.682 60.000 2.24 0.72 0.00 4.00
2055 4469 2.289010 CCCTGCAACCAAATTCAGAACC 60.289 50.000 0.00 0.00 0.00 3.62
2056 4470 2.627699 TCCCTGCAACCAAATTCAGAAC 59.372 45.455 0.00 0.00 0.00 3.01
2080 4495 4.281947 TGCGCCGTGGTCGTGTAA 62.282 61.111 4.18 0.00 35.01 2.41
2374 4789 1.763968 TGTAGGTCATCGTCCTGGAG 58.236 55.000 0.00 0.00 36.60 3.86
2563 4978 1.299165 CGGTATGTCCTTCTCCGCG 60.299 63.158 0.00 0.00 35.01 6.46
2592 5007 1.549037 GCGAGATCCCCTGGAGTATCT 60.549 57.143 0.00 0.00 34.05 1.98
2710 5125 0.401356 TGAGCCAAATGGAGTGCAGA 59.599 50.000 2.98 0.00 37.39 4.26
2985 5417 9.679661 TTTTCAATGTCAAGTAGAATAGCCATA 57.320 29.630 0.00 0.00 0.00 2.74
2989 5421 9.899226 AAGTTTTTCAATGTCAAGTAGAATAGC 57.101 29.630 0.00 0.00 0.00 2.97
3012 5444 5.581085 GGTTCATGTAGTGCTCGAATTAAGT 59.419 40.000 0.00 0.00 0.00 2.24
3020 5452 2.949451 AGAGGTTCATGTAGTGCTCG 57.051 50.000 0.00 0.00 0.00 5.03
3161 5594 1.538047 CTTTGGGGATGTGGACTGTG 58.462 55.000 0.00 0.00 0.00 3.66
3162 5595 0.405585 CCTTTGGGGATGTGGACTGT 59.594 55.000 0.00 0.00 37.23 3.55
3174 5607 0.332972 CCTTTCCCTCTCCCTTTGGG 59.667 60.000 0.00 0.00 46.11 4.12
3175 5608 0.332972 CCCTTTCCCTCTCCCTTTGG 59.667 60.000 0.00 0.00 0.00 3.28
3176 5609 1.372501 TCCCTTTCCCTCTCCCTTTG 58.627 55.000 0.00 0.00 0.00 2.77
3177 5610 1.925959 CATCCCTTTCCCTCTCCCTTT 59.074 52.381 0.00 0.00 0.00 3.11
3178 5611 1.082879 TCATCCCTTTCCCTCTCCCTT 59.917 52.381 0.00 0.00 0.00 3.95
3179 5612 0.725133 TCATCCCTTTCCCTCTCCCT 59.275 55.000 0.00 0.00 0.00 4.20
3180 5613 1.213182 GTTCATCCCTTTCCCTCTCCC 59.787 57.143 0.00 0.00 0.00 4.30
3181 5614 1.213182 GGTTCATCCCTTTCCCTCTCC 59.787 57.143 0.00 0.00 0.00 3.71
3182 5615 1.134371 CGGTTCATCCCTTTCCCTCTC 60.134 57.143 0.00 0.00 0.00 3.20
3329 5762 1.046472 TGTGGGTGTCGAGGTTCAGT 61.046 55.000 0.00 0.00 0.00 3.41
3466 5899 1.092921 AGGCAAGCGAAACGTTCACA 61.093 50.000 0.00 0.00 0.00 3.58
3628 6061 2.738743 AGTAACCTCCCAATTGCATGG 58.261 47.619 0.00 0.00 40.35 3.66
3668 6116 1.163554 CAGCAGAGTTCTTGGCTTCC 58.836 55.000 0.00 0.00 33.60 3.46
3698 6147 5.389778 TCAAACGTTTTCCATTCATGATCG 58.610 37.500 11.66 0.00 0.00 3.69
3702 6151 5.115472 CGTCTTCAAACGTTTTCCATTCATG 59.885 40.000 11.66 0.00 37.86 3.07
3709 6158 1.750351 GCCGTCTTCAAACGTTTTCC 58.250 50.000 11.66 0.00 41.01 3.13
3710 6159 1.382163 CGCCGTCTTCAAACGTTTTC 58.618 50.000 11.66 0.00 41.01 2.29
3711 6160 0.590481 GCGCCGTCTTCAAACGTTTT 60.590 50.000 11.66 0.00 41.01 2.43
3712 6161 1.010462 GCGCCGTCTTCAAACGTTT 60.010 52.632 7.96 7.96 41.01 3.60
3713 6162 2.629763 GCGCCGTCTTCAAACGTT 59.370 55.556 0.00 0.00 41.01 3.99
3714 6163 3.698463 CGCGCCGTCTTCAAACGT 61.698 61.111 0.00 0.00 41.01 3.99
3716 6165 4.736631 GGCGCGCCGTCTTCAAAC 62.737 66.667 37.24 7.78 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.