Multiple sequence alignment - TraesCS3D01G222800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G222800 chr3D 100.000 5659 0 0 1 5659 303595384 303589726 0.000000e+00 10451.0
1 TraesCS3D01G222800 chr3D 98.113 212 2 2 1 211 303595176 303594966 8.960000e-98 368.0
2 TraesCS3D01G222800 chr3D 100.000 28 0 0 467 494 36350858 36350885 1.000000e-02 52.8
3 TraesCS3D01G222800 chr3A 93.822 3804 131 48 680 4423 430775328 430779087 0.000000e+00 5627.0
4 TraesCS3D01G222800 chr3A 92.966 1251 71 9 4413 5659 430779117 430780354 0.000000e+00 1807.0
5 TraesCS3D01G222800 chr3A 86.047 86 9 2 637 719 19478579 19478494 7.810000e-14 89.8
6 TraesCS3D01G222800 chr3B 94.389 1800 72 16 3351 5129 417714882 417716673 0.000000e+00 2737.0
7 TraesCS3D01G222800 chr3B 96.264 1365 33 6 711 2067 417712285 417713639 0.000000e+00 2222.0
8 TraesCS3D01G222800 chr3B 92.470 1235 45 24 2061 3280 417713665 417714866 0.000000e+00 1722.0
9 TraesCS3D01G222800 chr3B 89.500 200 17 3 438 636 417712087 417712283 3.390000e-62 250.0
10 TraesCS3D01G222800 chr3B 88.636 88 7 2 637 721 455140536 455140623 2.790000e-18 104.0
11 TraesCS3D01G222800 chr3B 85.263 95 10 3 631 721 526282318 526282412 1.680000e-15 95.3
12 TraesCS3D01G222800 chr7D 97.107 242 7 0 197 438 252028383 252028142 5.280000e-110 409.0
13 TraesCS3D01G222800 chr7D 95.492 244 9 2 197 439 480693191 480693433 6.880000e-104 388.0
14 TraesCS3D01G222800 chr7D 95.755 212 7 2 1 211 252028371 252028161 1.950000e-89 340.0
15 TraesCS3D01G222800 chr6B 96.694 242 8 0 197 438 247730721 247730962 2.460000e-108 403.0
16 TraesCS3D01G222800 chr6B 95.510 245 11 0 197 441 574002680 574002436 5.320000e-105 392.0
17 TraesCS3D01G222800 chr6B 95.122 246 11 1 197 442 574007785 574007541 2.470000e-103 387.0
18 TraesCS3D01G222800 chr6B 96.985 199 6 0 1 199 247730733 247730931 9.080000e-88 335.0
19 TraesCS3D01G222800 chr6B 94.811 212 9 2 1 211 574002668 574002458 4.230000e-86 329.0
20 TraesCS3D01G222800 chr6B 88.462 78 5 3 1041 1116 353789182 353789257 2.170000e-14 91.6
21 TraesCS3D01G222800 chr4A 96.694 242 8 0 197 438 458992293 458992534 2.460000e-108 403.0
22 TraesCS3D01G222800 chr4A 96.482 199 7 0 1 199 458992305 458992503 4.230000e-86 329.0
23 TraesCS3D01G222800 chr4A 85.882 85 9 2 637 718 578562713 578562629 2.810000e-13 87.9
24 TraesCS3D01G222800 chr4A 100.000 29 0 0 466 494 178153732 178153704 3.000000e-03 54.7
25 TraesCS3D01G222800 chr4A 100.000 28 0 0 467 494 180811572 180811545 1.000000e-02 52.8
26 TraesCS3D01G222800 chr4A 100.000 28 0 0 467 494 236910978 236910951 1.000000e-02 52.8
27 TraesCS3D01G222800 chr7B 95.868 242 10 0 197 438 228783758 228783517 5.320000e-105 392.0
28 TraesCS3D01G222800 chr7B 94.340 212 10 2 1 211 228783746 228783536 1.970000e-84 324.0
29 TraesCS3D01G222800 chr5D 95.868 242 10 0 197 438 48387458 48387699 5.320000e-105 392.0
30 TraesCS3D01G222800 chr5D 95.868 242 10 0 197 438 483298349 483298590 5.320000e-105 392.0
31 TraesCS3D01G222800 chr5D 80.476 210 37 3 5268 5474 256725523 256725315 2.110000e-34 158.0
32 TraesCS3D01G222800 chr6D 81.951 410 68 6 5253 5659 16254413 16254819 5.430000e-90 342.0
33 TraesCS3D01G222800 chr6D 94.366 213 10 2 1 212 369457298 369457087 5.470000e-85 326.0
34 TraesCS3D01G222800 chr6D 86.585 82 9 1 641 720 31825200 31825119 7.810000e-14 89.8
35 TraesCS3D01G222800 chr6D 95.745 47 1 1 631 676 471540000 471540046 2.190000e-09 75.0
36 TraesCS3D01G222800 chr6D 97.059 34 0 1 646 679 459170296 459170264 7.920000e-04 56.5
37 TraesCS3D01G222800 chr4B 94.811 212 9 2 1 211 157035856 157035646 4.230000e-86 329.0
38 TraesCS3D01G222800 chr4B 85.507 69 10 0 1253 1321 509256580 509256648 7.860000e-09 73.1
39 TraesCS3D01G222800 chr4B 100.000 29 0 0 468 496 51359919 51359891 3.000000e-03 54.7
40 TraesCS3D01G222800 chr2D 94.366 213 10 2 1 212 105488975 105489186 5.470000e-85 326.0
41 TraesCS3D01G222800 chr1D 78.704 432 75 15 4198 4623 478412376 478411956 7.220000e-69 272.0
42 TraesCS3D01G222800 chr1D 83.594 128 18 2 1197 1321 478415258 478415131 3.580000e-22 117.0
43 TraesCS3D01G222800 chr1D 88.298 94 10 1 1012 1104 478415405 478415312 1.670000e-20 111.0
44 TraesCS3D01G222800 chr1D 88.372 86 4 5 637 719 84711257 84711175 1.300000e-16 99.0
45 TraesCS3D01G222800 chr1D 81.176 85 11 4 638 718 54014328 54014245 4.730000e-06 63.9
46 TraesCS3D01G222800 chr1B 78.220 427 82 9 4198 4618 666536437 666536016 4.350000e-66 263.0
47 TraesCS3D01G222800 chr1B 84.921 126 16 2 1196 1321 666538978 666538856 2.140000e-24 124.0
48 TraesCS3D01G222800 chr1B 88.119 101 8 4 1019 1116 666539113 666539014 3.580000e-22 117.0
49 TraesCS3D01G222800 chr1A 78.372 430 71 19 4198 4623 574666251 574665840 5.620000e-65 259.0
50 TraesCS3D01G222800 chr1A 83.333 138 17 6 1186 1321 574669180 574669047 7.700000e-24 122.0
51 TraesCS3D01G222800 chr1A 90.110 91 5 4 1019 1109 574669310 574669224 1.290000e-21 115.0
52 TraesCS3D01G222800 chr1A 91.837 49 3 1 632 679 139555449 139555401 3.660000e-07 67.6
53 TraesCS3D01G222800 chrUn 89.831 177 17 1 4447 4623 259903555 259903730 5.700000e-55 226.0
54 TraesCS3D01G222800 chrUn 89.831 177 17 1 4447 4623 437622877 437622702 5.700000e-55 226.0
55 TraesCS3D01G222800 chrUn 89.266 177 18 1 4447 4623 316528927 316529102 2.650000e-53 220.0
56 TraesCS3D01G222800 chrUn 89.266 177 18 1 4447 4623 357960524 357960349 2.650000e-53 220.0
57 TraesCS3D01G222800 chrUn 83.871 93 7 5 637 721 112683108 112683016 1.310000e-11 82.4
58 TraesCS3D01G222800 chr2B 83.621 116 18 1 1207 1321 703573539 703573654 2.160000e-19 108.0
59 TraesCS3D01G222800 chr2B 88.462 78 5 3 1041 1116 703573476 703573551 2.170000e-14 91.6
60 TraesCS3D01G222800 chr2B 82.292 96 13 3 627 719 479585225 479585319 4.700000e-11 80.5
61 TraesCS3D01G222800 chr4D 87.209 86 8 2 637 719 19442647 19442562 1.680000e-15 95.3
62 TraesCS3D01G222800 chr4D 90.769 65 4 1 1041 1105 12832666 12832728 1.010000e-12 86.1
63 TraesCS3D01G222800 chr4D 89.655 58 6 0 1048 1105 197326112 197326055 2.190000e-09 75.0
64 TraesCS3D01G222800 chr4D 92.000 50 3 1 630 678 58159414 58159365 1.020000e-07 69.4
65 TraesCS3D01G222800 chr7A 87.179 78 6 3 1041 1116 337923170 337923245 1.010000e-12 86.1
66 TraesCS3D01G222800 chr6A 90.164 61 3 3 629 686 586918557 586918497 6.080000e-10 76.8
67 TraesCS3D01G222800 chr6A 90.196 51 4 1 4061 4110 326736765 326736715 1.320000e-06 65.8
68 TraesCS3D01G222800 chr6A 100.000 28 0 0 467 494 108413298 108413271 1.000000e-02 52.8
69 TraesCS3D01G222800 chr6A 100.000 28 0 0 467 494 489669159 489669132 1.000000e-02 52.8
70 TraesCS3D01G222800 chr5B 95.122 41 2 0 4071 4111 493933017 493933057 1.320000e-06 65.8
71 TraesCS3D01G222800 chr5B 100.000 28 0 0 467 494 160233340 160233313 1.000000e-02 52.8
72 TraesCS3D01G222800 chr5A 100.000 28 0 0 467 494 624371682 624371655 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G222800 chr3D 303589726 303595384 5658 True 5409.50 10451 99.05650 1 5659 2 chr3D.!!$R1 5658
1 TraesCS3D01G222800 chr3A 430775328 430780354 5026 False 3717.00 5627 93.39400 680 5659 2 chr3A.!!$F1 4979
2 TraesCS3D01G222800 chr3B 417712087 417716673 4586 False 1732.75 2737 93.15575 438 5129 4 chr3B.!!$F3 4691

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
26 27 0.107945 GCTCACTTCTCCGCTCCAAT 60.108 55.000 0.0 0.0 0.00 3.16 F
548 549 0.179702 GGGCTAGGGTTTTACCTCCG 59.820 60.000 0.0 0.0 42.09 4.63 F
2019 2034 1.545428 GCCACCAGGACATTCAGTTCA 60.545 52.381 0.0 0.0 36.89 3.18 F
3901 3995 0.249398 TCGAGGCTTCAAACCCTAGC 59.751 55.000 0.0 0.0 0.00 3.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1960 1975 0.178981 AGTTGTGGACAGGCAAGCAT 60.179 50.000 0.0 0.0 0.00 3.79 R
2342 2398 3.539604 AGAAGAGTATTGGCTGTCATGC 58.460 45.455 0.0 0.0 0.00 4.06 R
4003 4097 0.752009 TGCAACACGGCCCAACTTAA 60.752 50.000 0.0 0.0 0.00 1.85 R
4876 5031 0.247736 GAGTGTCCGCTTCAGACCAT 59.752 55.000 0.0 0.0 33.09 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.301577 ACAATAGCTCACTTCTCCGC 57.698 50.000 0.00 0.00 0.00 5.54
21 22 1.827969 ACAATAGCTCACTTCTCCGCT 59.172 47.619 0.00 0.00 36.56 5.52
22 23 2.159170 ACAATAGCTCACTTCTCCGCTC 60.159 50.000 0.00 0.00 34.14 5.03
23 24 1.036707 ATAGCTCACTTCTCCGCTCC 58.963 55.000 0.00 0.00 34.14 4.70
24 25 0.323451 TAGCTCACTTCTCCGCTCCA 60.323 55.000 0.00 0.00 34.14 3.86
25 26 1.188219 AGCTCACTTCTCCGCTCCAA 61.188 55.000 0.00 0.00 0.00 3.53
26 27 0.107945 GCTCACTTCTCCGCTCCAAT 60.108 55.000 0.00 0.00 0.00 3.16
27 28 1.677217 GCTCACTTCTCCGCTCCAATT 60.677 52.381 0.00 0.00 0.00 2.32
28 29 2.704572 CTCACTTCTCCGCTCCAATTT 58.295 47.619 0.00 0.00 0.00 1.82
29 30 2.417933 CTCACTTCTCCGCTCCAATTTG 59.582 50.000 0.00 0.00 0.00 2.32
30 31 1.135575 CACTTCTCCGCTCCAATTTGC 60.136 52.381 0.00 0.00 0.00 3.68
31 32 1.167851 CTTCTCCGCTCCAATTTGCA 58.832 50.000 0.00 0.00 0.00 4.08
32 33 1.131883 CTTCTCCGCTCCAATTTGCAG 59.868 52.381 0.00 0.00 0.00 4.41
33 34 0.324614 TCTCCGCTCCAATTTGCAGA 59.675 50.000 0.00 0.00 0.00 4.26
34 35 1.167851 CTCCGCTCCAATTTGCAGAA 58.832 50.000 0.00 0.00 0.00 3.02
35 36 1.541147 CTCCGCTCCAATTTGCAGAAA 59.459 47.619 0.00 0.00 0.00 2.52
36 37 1.959985 TCCGCTCCAATTTGCAGAAAA 59.040 42.857 0.00 0.00 0.00 2.29
37 38 2.061028 CCGCTCCAATTTGCAGAAAAC 58.939 47.619 0.00 0.00 0.00 2.43
38 39 2.061028 CGCTCCAATTTGCAGAAAACC 58.939 47.619 0.00 0.00 0.00 3.27
39 40 2.416747 GCTCCAATTTGCAGAAAACCC 58.583 47.619 0.00 0.00 0.00 4.11
40 41 2.871637 GCTCCAATTTGCAGAAAACCCC 60.872 50.000 0.00 0.00 0.00 4.95
41 42 2.634453 CTCCAATTTGCAGAAAACCCCT 59.366 45.455 0.00 0.00 0.00 4.79
42 43 3.044894 TCCAATTTGCAGAAAACCCCTT 58.955 40.909 0.00 0.00 0.00 3.95
43 44 4.227197 TCCAATTTGCAGAAAACCCCTTA 58.773 39.130 0.00 0.00 0.00 2.69
44 45 4.843516 TCCAATTTGCAGAAAACCCCTTAT 59.156 37.500 0.00 0.00 0.00 1.73
45 46 5.309282 TCCAATTTGCAGAAAACCCCTTATT 59.691 36.000 0.00 0.00 0.00 1.40
46 47 6.498651 TCCAATTTGCAGAAAACCCCTTATTA 59.501 34.615 0.00 0.00 0.00 0.98
47 48 7.181845 TCCAATTTGCAGAAAACCCCTTATTAT 59.818 33.333 0.00 0.00 0.00 1.28
48 49 7.495606 CCAATTTGCAGAAAACCCCTTATTATC 59.504 37.037 0.00 0.00 0.00 1.75
49 50 7.978099 ATTTGCAGAAAACCCCTTATTATCT 57.022 32.000 0.00 0.00 0.00 1.98
50 51 7.790782 TTTGCAGAAAACCCCTTATTATCTT 57.209 32.000 0.00 0.00 0.00 2.40
51 52 8.887264 TTTGCAGAAAACCCCTTATTATCTTA 57.113 30.769 0.00 0.00 0.00 2.10
52 53 9.487442 TTTGCAGAAAACCCCTTATTATCTTAT 57.513 29.630 0.00 0.00 0.00 1.73
60 61 8.879427 AACCCCTTATTATCTTATATGCAACC 57.121 34.615 0.00 0.00 0.00 3.77
61 62 7.110155 ACCCCTTATTATCTTATATGCAACCG 58.890 38.462 0.00 0.00 0.00 4.44
62 63 6.038271 CCCCTTATTATCTTATATGCAACCGC 59.962 42.308 0.00 0.00 39.24 5.68
71 72 4.424711 TGCAACCGCATCCCTCCC 62.425 66.667 0.00 0.00 45.36 4.30
72 73 4.115199 GCAACCGCATCCCTCCCT 62.115 66.667 0.00 0.00 38.36 4.20
73 74 2.190578 CAACCGCATCCCTCCCTC 59.809 66.667 0.00 0.00 0.00 4.30
74 75 2.285368 AACCGCATCCCTCCCTCA 60.285 61.111 0.00 0.00 0.00 3.86
75 76 2.670148 AACCGCATCCCTCCCTCAC 61.670 63.158 0.00 0.00 0.00 3.51
76 77 3.866582 CCGCATCCCTCCCTCACC 61.867 72.222 0.00 0.00 0.00 4.02
77 78 2.765807 CGCATCCCTCCCTCACCT 60.766 66.667 0.00 0.00 0.00 4.00
78 79 2.801631 CGCATCCCTCCCTCACCTC 61.802 68.421 0.00 0.00 0.00 3.85
79 80 1.690633 GCATCCCTCCCTCACCTCA 60.691 63.158 0.00 0.00 0.00 3.86
80 81 1.059006 GCATCCCTCCCTCACCTCAT 61.059 60.000 0.00 0.00 0.00 2.90
81 82 1.055040 CATCCCTCCCTCACCTCATC 58.945 60.000 0.00 0.00 0.00 2.92
82 83 0.644380 ATCCCTCCCTCACCTCATCA 59.356 55.000 0.00 0.00 0.00 3.07
83 84 0.417437 TCCCTCCCTCACCTCATCAA 59.583 55.000 0.00 0.00 0.00 2.57
84 85 1.203428 TCCCTCCCTCACCTCATCAAA 60.203 52.381 0.00 0.00 0.00 2.69
85 86 1.635487 CCCTCCCTCACCTCATCAAAA 59.365 52.381 0.00 0.00 0.00 2.44
86 87 2.619074 CCCTCCCTCACCTCATCAAAAC 60.619 54.545 0.00 0.00 0.00 2.43
87 88 2.040278 CCTCCCTCACCTCATCAAAACA 59.960 50.000 0.00 0.00 0.00 2.83
88 89 3.341823 CTCCCTCACCTCATCAAAACAG 58.658 50.000 0.00 0.00 0.00 3.16
89 90 1.815003 CCCTCACCTCATCAAAACAGC 59.185 52.381 0.00 0.00 0.00 4.40
90 91 1.815003 CCTCACCTCATCAAAACAGCC 59.185 52.381 0.00 0.00 0.00 4.85
91 92 2.553904 CCTCACCTCATCAAAACAGCCT 60.554 50.000 0.00 0.00 0.00 4.58
92 93 2.486982 CTCACCTCATCAAAACAGCCTG 59.513 50.000 0.00 0.00 0.00 4.85
93 94 2.106338 TCACCTCATCAAAACAGCCTGA 59.894 45.455 0.00 0.00 0.00 3.86
94 95 2.486982 CACCTCATCAAAACAGCCTGAG 59.513 50.000 0.00 0.00 34.48 3.35
95 96 2.373169 ACCTCATCAAAACAGCCTGAGA 59.627 45.455 0.00 0.00 36.32 3.27
96 97 3.181440 ACCTCATCAAAACAGCCTGAGAA 60.181 43.478 0.00 0.00 36.32 2.87
97 98 3.822735 CCTCATCAAAACAGCCTGAGAAA 59.177 43.478 0.00 0.00 36.32 2.52
98 99 4.461781 CCTCATCAAAACAGCCTGAGAAAT 59.538 41.667 0.00 0.00 36.32 2.17
99 100 5.649395 CCTCATCAAAACAGCCTGAGAAATA 59.351 40.000 0.00 0.00 36.32 1.40
100 101 6.320672 CCTCATCAAAACAGCCTGAGAAATAT 59.679 38.462 0.00 0.00 36.32 1.28
101 102 7.500227 CCTCATCAAAACAGCCTGAGAAATATA 59.500 37.037 0.00 0.00 36.32 0.86
102 103 8.985315 TCATCAAAACAGCCTGAGAAATATAT 57.015 30.769 0.00 0.00 0.00 0.86
103 104 9.412460 TCATCAAAACAGCCTGAGAAATATATT 57.588 29.630 0.00 0.00 0.00 1.28
106 107 9.859427 TCAAAACAGCCTGAGAAATATATTTTG 57.141 29.630 11.92 7.10 35.60 2.44
107 108 9.859427 CAAAACAGCCTGAGAAATATATTTTGA 57.141 29.630 11.92 0.00 36.08 2.69
109 110 8.814038 AACAGCCTGAGAAATATATTTTGAGT 57.186 30.769 11.92 0.00 0.00 3.41
110 111 8.218338 ACAGCCTGAGAAATATATTTTGAGTG 57.782 34.615 11.92 6.68 0.00 3.51
111 112 8.049117 ACAGCCTGAGAAATATATTTTGAGTGA 58.951 33.333 11.92 0.00 0.00 3.41
112 113 8.896744 CAGCCTGAGAAATATATTTTGAGTGAA 58.103 33.333 11.92 0.00 0.00 3.18
113 114 9.466497 AGCCTGAGAAATATATTTTGAGTGAAA 57.534 29.630 11.92 0.00 0.00 2.69
174 175 7.873739 ACAAGAGTGTTTTCTTTCAAGTTTG 57.126 32.000 0.00 0.00 35.28 2.93
175 176 7.433680 ACAAGAGTGTTTTCTTTCAAGTTTGT 58.566 30.769 0.00 0.00 35.28 2.83
176 177 7.382218 ACAAGAGTGTTTTCTTTCAAGTTTGTG 59.618 33.333 0.00 0.00 35.28 3.33
177 178 7.214467 AGAGTGTTTTCTTTCAAGTTTGTGA 57.786 32.000 0.00 0.00 0.00 3.58
178 179 7.657336 AGAGTGTTTTCTTTCAAGTTTGTGAA 58.343 30.769 0.00 0.00 35.72 3.18
179 180 7.595130 AGAGTGTTTTCTTTCAAGTTTGTGAAC 59.405 33.333 0.00 0.00 37.24 3.18
180 181 7.206687 AGTGTTTTCTTTCAAGTTTGTGAACA 58.793 30.769 0.00 0.00 37.24 3.18
181 182 7.708752 AGTGTTTTCTTTCAAGTTTGTGAACAA 59.291 29.630 0.00 0.00 37.24 2.83
182 183 8.003784 GTGTTTTCTTTCAAGTTTGTGAACAAG 58.996 33.333 0.00 0.00 37.24 3.16
183 184 7.708752 TGTTTTCTTTCAAGTTTGTGAACAAGT 59.291 29.630 0.00 0.00 37.24 3.16
184 185 9.187455 GTTTTCTTTCAAGTTTGTGAACAAGTA 57.813 29.630 0.00 0.00 37.24 2.24
185 186 8.736751 TTTCTTTCAAGTTTGTGAACAAGTAC 57.263 30.769 0.00 0.00 37.24 2.73
186 187 7.681939 TCTTTCAAGTTTGTGAACAAGTACT 57.318 32.000 0.00 0.00 37.24 2.73
187 188 8.780846 TCTTTCAAGTTTGTGAACAAGTACTA 57.219 30.769 0.00 0.00 37.24 1.82
188 189 9.391006 TCTTTCAAGTTTGTGAACAAGTACTAT 57.609 29.630 0.00 0.00 37.24 2.12
190 191 9.997482 TTTCAAGTTTGTGAACAAGTACTATTC 57.003 29.630 11.27 11.27 37.24 1.75
191 192 8.958119 TCAAGTTTGTGAACAAGTACTATTCT 57.042 30.769 16.66 0.00 38.26 2.40
198 199 8.827177 TGTGAACAAGTACTATTCTACTTTGG 57.173 34.615 16.66 0.00 35.20 3.28
199 200 7.386848 TGTGAACAAGTACTATTCTACTTTGGC 59.613 37.037 16.66 0.00 35.20 4.52
200 201 7.386848 GTGAACAAGTACTATTCTACTTTGGCA 59.613 37.037 16.66 0.00 35.20 4.92
201 202 8.100791 TGAACAAGTACTATTCTACTTTGGCAT 58.899 33.333 16.66 0.00 35.20 4.40
202 203 8.863872 AACAAGTACTATTCTACTTTGGCATT 57.136 30.769 0.00 0.00 35.20 3.56
203 204 8.863872 ACAAGTACTATTCTACTTTGGCATTT 57.136 30.769 0.00 0.00 35.20 2.32
204 205 9.297037 ACAAGTACTATTCTACTTTGGCATTTT 57.703 29.630 0.00 0.00 35.20 1.82
207 208 8.244113 AGTACTATTCTACTTTGGCATTTTTGC 58.756 33.333 0.00 0.00 0.00 3.68
208 209 6.991938 ACTATTCTACTTTGGCATTTTTGCA 58.008 32.000 0.00 0.00 36.33 4.08
209 210 7.441017 ACTATTCTACTTTGGCATTTTTGCAA 58.559 30.769 0.00 0.00 36.33 4.08
210 211 5.982465 TTCTACTTTGGCATTTTTGCAAC 57.018 34.783 0.00 0.00 36.33 4.17
211 212 5.016051 TCTACTTTGGCATTTTTGCAACA 57.984 34.783 0.00 0.00 36.33 3.33
212 213 5.423015 TCTACTTTGGCATTTTTGCAACAA 58.577 33.333 0.00 0.00 36.33 2.83
213 214 6.054295 TCTACTTTGGCATTTTTGCAACAAT 58.946 32.000 4.98 4.98 36.33 2.71
214 215 7.212976 TCTACTTTGGCATTTTTGCAACAATA 58.787 30.769 10.36 0.00 36.33 1.90
215 216 6.303021 ACTTTGGCATTTTTGCAACAATAG 57.697 33.333 10.36 6.94 36.33 1.73
216 217 4.745837 TTGGCATTTTTGCAACAATAGC 57.254 36.364 10.36 14.58 36.33 2.97
217 218 4.005487 TGGCATTTTTGCAACAATAGCT 57.995 36.364 21.23 0.00 36.33 3.32
218 219 3.995705 TGGCATTTTTGCAACAATAGCTC 59.004 39.130 21.23 15.61 36.33 4.09
219 220 3.995705 GGCATTTTTGCAACAATAGCTCA 59.004 39.130 21.23 0.00 36.33 4.26
220 221 4.143052 GGCATTTTTGCAACAATAGCTCAC 60.143 41.667 21.23 9.87 36.33 3.51
221 222 4.687483 GCATTTTTGCAACAATAGCTCACT 59.313 37.500 10.36 0.00 34.41 3.41
222 223 5.178067 GCATTTTTGCAACAATAGCTCACTT 59.822 36.000 10.36 0.00 34.41 3.16
223 224 6.617105 GCATTTTTGCAACAATAGCTCACTTC 60.617 38.462 10.36 0.00 34.41 3.01
224 225 5.772825 TTTTGCAACAATAGCTCACTTCT 57.227 34.783 0.00 0.00 0.00 2.85
225 226 5.362556 TTTGCAACAATAGCTCACTTCTC 57.637 39.130 0.00 0.00 0.00 2.87
226 227 3.338249 TGCAACAATAGCTCACTTCTCC 58.662 45.455 0.00 0.00 0.00 3.71
227 228 2.349886 GCAACAATAGCTCACTTCTCCG 59.650 50.000 0.00 0.00 0.00 4.63
228 229 2.301577 ACAATAGCTCACTTCTCCGC 57.698 50.000 0.00 0.00 0.00 5.54
229 230 1.827969 ACAATAGCTCACTTCTCCGCT 59.172 47.619 0.00 0.00 36.56 5.52
230 231 2.159170 ACAATAGCTCACTTCTCCGCTC 60.159 50.000 0.00 0.00 34.14 5.03
231 232 1.036707 ATAGCTCACTTCTCCGCTCC 58.963 55.000 0.00 0.00 34.14 4.70
232 233 0.323451 TAGCTCACTTCTCCGCTCCA 60.323 55.000 0.00 0.00 34.14 3.86
233 234 1.188219 AGCTCACTTCTCCGCTCCAA 61.188 55.000 0.00 0.00 0.00 3.53
234 235 0.107945 GCTCACTTCTCCGCTCCAAT 60.108 55.000 0.00 0.00 0.00 3.16
235 236 1.677217 GCTCACTTCTCCGCTCCAATT 60.677 52.381 0.00 0.00 0.00 2.32
236 237 2.704572 CTCACTTCTCCGCTCCAATTT 58.295 47.619 0.00 0.00 0.00 1.82
237 238 2.417933 CTCACTTCTCCGCTCCAATTTG 59.582 50.000 0.00 0.00 0.00 2.32
238 239 1.135575 CACTTCTCCGCTCCAATTTGC 60.136 52.381 0.00 0.00 0.00 3.68
239 240 1.167851 CTTCTCCGCTCCAATTTGCA 58.832 50.000 0.00 0.00 0.00 4.08
240 241 1.131883 CTTCTCCGCTCCAATTTGCAG 59.868 52.381 0.00 0.00 0.00 4.41
241 242 0.324614 TCTCCGCTCCAATTTGCAGA 59.675 50.000 0.00 0.00 0.00 4.26
242 243 1.167851 CTCCGCTCCAATTTGCAGAA 58.832 50.000 0.00 0.00 0.00 3.02
243 244 1.541147 CTCCGCTCCAATTTGCAGAAA 59.459 47.619 0.00 0.00 0.00 2.52
244 245 1.959985 TCCGCTCCAATTTGCAGAAAA 59.040 42.857 0.00 0.00 0.00 2.29
245 246 2.061028 CCGCTCCAATTTGCAGAAAAC 58.939 47.619 0.00 0.00 0.00 2.43
246 247 2.061028 CGCTCCAATTTGCAGAAAACC 58.939 47.619 0.00 0.00 0.00 3.27
247 248 2.416747 GCTCCAATTTGCAGAAAACCC 58.583 47.619 0.00 0.00 0.00 4.11
248 249 2.871637 GCTCCAATTTGCAGAAAACCCC 60.872 50.000 0.00 0.00 0.00 4.95
249 250 2.634453 CTCCAATTTGCAGAAAACCCCT 59.366 45.455 0.00 0.00 0.00 4.79
250 251 3.044894 TCCAATTTGCAGAAAACCCCTT 58.955 40.909 0.00 0.00 0.00 3.95
251 252 4.227197 TCCAATTTGCAGAAAACCCCTTA 58.773 39.130 0.00 0.00 0.00 2.69
252 253 4.843516 TCCAATTTGCAGAAAACCCCTTAT 59.156 37.500 0.00 0.00 0.00 1.73
253 254 5.309282 TCCAATTTGCAGAAAACCCCTTATT 59.691 36.000 0.00 0.00 0.00 1.40
254 255 6.498651 TCCAATTTGCAGAAAACCCCTTATTA 59.501 34.615 0.00 0.00 0.00 0.98
255 256 7.181845 TCCAATTTGCAGAAAACCCCTTATTAT 59.818 33.333 0.00 0.00 0.00 1.28
256 257 7.495606 CCAATTTGCAGAAAACCCCTTATTATC 59.504 37.037 0.00 0.00 0.00 1.75
257 258 7.978099 ATTTGCAGAAAACCCCTTATTATCT 57.022 32.000 0.00 0.00 0.00 1.98
258 259 7.790782 TTTGCAGAAAACCCCTTATTATCTT 57.209 32.000 0.00 0.00 0.00 2.40
259 260 8.887264 TTTGCAGAAAACCCCTTATTATCTTA 57.113 30.769 0.00 0.00 0.00 2.10
260 261 9.487442 TTTGCAGAAAACCCCTTATTATCTTAT 57.513 29.630 0.00 0.00 0.00 1.73
268 269 8.879427 AACCCCTTATTATCTTATATGCAACC 57.121 34.615 0.00 0.00 0.00 3.77
269 270 7.110155 ACCCCTTATTATCTTATATGCAACCG 58.890 38.462 0.00 0.00 0.00 4.44
270 271 6.038271 CCCCTTATTATCTTATATGCAACCGC 59.962 42.308 0.00 0.00 39.24 5.68
279 280 4.424711 TGCAACCGCATCCCTCCC 62.425 66.667 0.00 0.00 45.36 4.30
280 281 4.115199 GCAACCGCATCCCTCCCT 62.115 66.667 0.00 0.00 38.36 4.20
281 282 2.190578 CAACCGCATCCCTCCCTC 59.809 66.667 0.00 0.00 0.00 4.30
282 283 2.285368 AACCGCATCCCTCCCTCA 60.285 61.111 0.00 0.00 0.00 3.86
283 284 2.670148 AACCGCATCCCTCCCTCAC 61.670 63.158 0.00 0.00 0.00 3.51
284 285 3.866582 CCGCATCCCTCCCTCACC 61.867 72.222 0.00 0.00 0.00 4.02
285 286 2.765807 CGCATCCCTCCCTCACCT 60.766 66.667 0.00 0.00 0.00 4.00
286 287 2.801631 CGCATCCCTCCCTCACCTC 61.802 68.421 0.00 0.00 0.00 3.85
287 288 1.690633 GCATCCCTCCCTCACCTCA 60.691 63.158 0.00 0.00 0.00 3.86
288 289 1.059006 GCATCCCTCCCTCACCTCAT 61.059 60.000 0.00 0.00 0.00 2.90
289 290 1.055040 CATCCCTCCCTCACCTCATC 58.945 60.000 0.00 0.00 0.00 2.92
290 291 0.644380 ATCCCTCCCTCACCTCATCA 59.356 55.000 0.00 0.00 0.00 3.07
291 292 0.417437 TCCCTCCCTCACCTCATCAA 59.583 55.000 0.00 0.00 0.00 2.57
292 293 1.203428 TCCCTCCCTCACCTCATCAAA 60.203 52.381 0.00 0.00 0.00 2.69
293 294 1.635487 CCCTCCCTCACCTCATCAAAA 59.365 52.381 0.00 0.00 0.00 2.44
294 295 2.619074 CCCTCCCTCACCTCATCAAAAC 60.619 54.545 0.00 0.00 0.00 2.43
295 296 2.040278 CCTCCCTCACCTCATCAAAACA 59.960 50.000 0.00 0.00 0.00 2.83
296 297 3.341823 CTCCCTCACCTCATCAAAACAG 58.658 50.000 0.00 0.00 0.00 3.16
297 298 1.815003 CCCTCACCTCATCAAAACAGC 59.185 52.381 0.00 0.00 0.00 4.40
298 299 1.815003 CCTCACCTCATCAAAACAGCC 59.185 52.381 0.00 0.00 0.00 4.85
299 300 2.553904 CCTCACCTCATCAAAACAGCCT 60.554 50.000 0.00 0.00 0.00 4.58
300 301 2.486982 CTCACCTCATCAAAACAGCCTG 59.513 50.000 0.00 0.00 0.00 4.85
301 302 2.106338 TCACCTCATCAAAACAGCCTGA 59.894 45.455 0.00 0.00 0.00 3.86
302 303 2.486982 CACCTCATCAAAACAGCCTGAG 59.513 50.000 0.00 0.00 34.48 3.35
303 304 2.373169 ACCTCATCAAAACAGCCTGAGA 59.627 45.455 0.00 0.00 36.32 3.27
304 305 3.181440 ACCTCATCAAAACAGCCTGAGAA 60.181 43.478 0.00 0.00 36.32 2.87
305 306 3.822735 CCTCATCAAAACAGCCTGAGAAA 59.177 43.478 0.00 0.00 36.32 2.52
306 307 4.461781 CCTCATCAAAACAGCCTGAGAAAT 59.538 41.667 0.00 0.00 36.32 2.17
307 308 5.649395 CCTCATCAAAACAGCCTGAGAAATA 59.351 40.000 0.00 0.00 36.32 1.40
308 309 6.320672 CCTCATCAAAACAGCCTGAGAAATAT 59.679 38.462 0.00 0.00 36.32 1.28
309 310 7.500227 CCTCATCAAAACAGCCTGAGAAATATA 59.500 37.037 0.00 0.00 36.32 0.86
310 311 8.985315 TCATCAAAACAGCCTGAGAAATATAT 57.015 30.769 0.00 0.00 0.00 0.86
311 312 9.412460 TCATCAAAACAGCCTGAGAAATATATT 57.588 29.630 0.00 0.00 0.00 1.28
314 315 9.859427 TCAAAACAGCCTGAGAAATATATTTTG 57.141 29.630 11.92 7.10 35.60 2.44
315 316 9.859427 CAAAACAGCCTGAGAAATATATTTTGA 57.141 29.630 11.92 0.00 36.08 2.69
317 318 8.814038 AACAGCCTGAGAAATATATTTTGAGT 57.186 30.769 11.92 0.00 0.00 3.41
318 319 8.218338 ACAGCCTGAGAAATATATTTTGAGTG 57.782 34.615 11.92 6.68 0.00 3.51
319 320 8.049117 ACAGCCTGAGAAATATATTTTGAGTGA 58.951 33.333 11.92 0.00 0.00 3.41
320 321 8.896744 CAGCCTGAGAAATATATTTTGAGTGAA 58.103 33.333 11.92 0.00 0.00 3.18
321 322 9.466497 AGCCTGAGAAATATATTTTGAGTGAAA 57.534 29.630 11.92 0.00 0.00 2.69
382 383 7.873739 ACAAGAGTGTTTTCTTTCAAGTTTG 57.126 32.000 0.00 0.00 35.28 2.93
383 384 7.433680 ACAAGAGTGTTTTCTTTCAAGTTTGT 58.566 30.769 0.00 0.00 35.28 2.83
384 385 7.382218 ACAAGAGTGTTTTCTTTCAAGTTTGTG 59.618 33.333 0.00 0.00 35.28 3.33
385 386 7.214467 AGAGTGTTTTCTTTCAAGTTTGTGA 57.786 32.000 0.00 0.00 0.00 3.58
386 387 7.657336 AGAGTGTTTTCTTTCAAGTTTGTGAA 58.343 30.769 0.00 0.00 35.72 3.18
387 388 7.595130 AGAGTGTTTTCTTTCAAGTTTGTGAAC 59.405 33.333 0.00 0.00 37.24 3.18
388 389 7.206687 AGTGTTTTCTTTCAAGTTTGTGAACA 58.793 30.769 0.00 0.00 37.24 3.18
389 390 7.708752 AGTGTTTTCTTTCAAGTTTGTGAACAA 59.291 29.630 0.00 0.00 37.24 2.83
390 391 8.003784 GTGTTTTCTTTCAAGTTTGTGAACAAG 58.996 33.333 0.00 0.00 37.24 3.16
391 392 7.708752 TGTTTTCTTTCAAGTTTGTGAACAAGT 59.291 29.630 0.00 0.00 37.24 3.16
392 393 9.187455 GTTTTCTTTCAAGTTTGTGAACAAGTA 57.813 29.630 0.00 0.00 37.24 2.24
393 394 8.736751 TTTCTTTCAAGTTTGTGAACAAGTAC 57.263 30.769 0.00 0.00 37.24 2.73
394 395 7.681939 TCTTTCAAGTTTGTGAACAAGTACT 57.318 32.000 0.00 0.00 37.24 2.73
395 396 8.780846 TCTTTCAAGTTTGTGAACAAGTACTA 57.219 30.769 0.00 0.00 37.24 1.82
396 397 9.391006 TCTTTCAAGTTTGTGAACAAGTACTAT 57.609 29.630 0.00 0.00 37.24 2.12
398 399 9.997482 TTTCAAGTTTGTGAACAAGTACTATTC 57.003 29.630 11.27 11.27 37.24 1.75
399 400 8.958119 TCAAGTTTGTGAACAAGTACTATTCT 57.042 30.769 16.66 0.00 38.26 2.40
406 407 8.827177 TGTGAACAAGTACTATTCTACTTTGG 57.173 34.615 16.66 0.00 35.20 3.28
407 408 8.644216 TGTGAACAAGTACTATTCTACTTTGGA 58.356 33.333 16.66 0.00 35.20 3.53
408 409 9.654663 GTGAACAAGTACTATTCTACTTTGGAT 57.345 33.333 16.66 0.00 35.20 3.41
409 410 9.871238 TGAACAAGTACTATTCTACTTTGGATC 57.129 33.333 16.66 4.76 35.20 3.36
410 411 9.315525 GAACAAGTACTATTCTACTTTGGATCC 57.684 37.037 4.20 4.20 35.20 3.36
411 412 7.490000 ACAAGTACTATTCTACTTTGGATCCG 58.510 38.462 7.39 0.00 35.20 4.18
412 413 7.123847 ACAAGTACTATTCTACTTTGGATCCGT 59.876 37.037 7.39 1.29 35.20 4.69
413 414 7.657023 AGTACTATTCTACTTTGGATCCGTT 57.343 36.000 7.39 0.00 0.00 4.44
414 415 7.490000 AGTACTATTCTACTTTGGATCCGTTG 58.510 38.462 7.39 1.61 0.00 4.10
415 416 5.116882 ACTATTCTACTTTGGATCCGTTGC 58.883 41.667 7.39 0.00 0.00 4.17
416 417 3.410631 TTCTACTTTGGATCCGTTGCA 57.589 42.857 7.39 0.00 0.00 4.08
417 418 3.410631 TCTACTTTGGATCCGTTGCAA 57.589 42.857 7.39 0.00 33.34 4.08
418 419 3.071479 TCTACTTTGGATCCGTTGCAAC 58.929 45.455 19.89 19.89 35.14 4.17
427 428 4.249020 CGTTGCAACGCACAGGCA 62.249 61.111 35.89 0.00 46.06 4.75
428 429 2.655044 GTTGCAACGCACAGGCAC 60.655 61.111 14.90 0.00 38.71 5.01
429 430 3.136791 TTGCAACGCACAGGCACA 61.137 55.556 0.00 0.00 38.71 4.57
430 431 2.488403 TTGCAACGCACAGGCACAT 61.488 52.632 0.00 0.00 38.71 3.21
431 432 2.014064 TTGCAACGCACAGGCACATT 62.014 50.000 0.00 0.00 38.71 2.71
432 433 2.017783 GCAACGCACAGGCACATTG 61.018 57.895 0.00 0.00 41.24 2.82
433 434 2.017783 CAACGCACAGGCACATTGC 61.018 57.895 0.00 0.00 44.08 3.56
434 435 2.195567 AACGCACAGGCACATTGCT 61.196 52.632 0.00 0.00 44.28 3.91
435 436 0.888736 AACGCACAGGCACATTGCTA 60.889 50.000 0.00 0.00 44.28 3.49
436 437 1.300971 ACGCACAGGCACATTGCTAG 61.301 55.000 0.00 0.00 44.28 3.42
437 438 1.300971 CGCACAGGCACATTGCTAGT 61.301 55.000 0.00 0.00 44.28 2.57
438 439 0.449388 GCACAGGCACATTGCTAGTC 59.551 55.000 0.00 0.00 44.28 2.59
439 440 1.812235 CACAGGCACATTGCTAGTCA 58.188 50.000 0.00 0.00 44.28 3.41
440 441 2.153645 CACAGGCACATTGCTAGTCAA 58.846 47.619 0.00 2.73 44.28 3.18
441 442 2.161012 CACAGGCACATTGCTAGTCAAG 59.839 50.000 0.00 2.23 44.28 3.02
442 443 2.224621 ACAGGCACATTGCTAGTCAAGT 60.225 45.455 0.00 2.69 44.28 3.16
443 444 2.417933 CAGGCACATTGCTAGTCAAGTC 59.582 50.000 0.00 0.00 44.28 3.01
444 445 2.304180 AGGCACATTGCTAGTCAAGTCT 59.696 45.455 0.00 0.00 44.28 3.24
445 446 2.675348 GGCACATTGCTAGTCAAGTCTC 59.325 50.000 0.00 0.00 44.28 3.36
475 476 6.312426 ACATTCTCATCTCACTTTGATTCGTC 59.688 38.462 0.00 0.00 0.00 4.20
506 507 4.038080 GTTTTGCGCCGGACAGGG 62.038 66.667 5.05 0.00 41.48 4.45
512 513 2.505982 CGCCGGACAGGGATTCAT 59.494 61.111 5.05 0.00 41.48 2.57
519 520 3.491342 CGGACAGGGATTCATAGAGAGA 58.509 50.000 0.00 0.00 0.00 3.10
528 529 0.947960 TCATAGAGAGAAGGCGCTCG 59.052 55.000 7.64 0.00 44.50 5.03
540 541 3.782443 CGCTCGGGGCTAGGGTTT 61.782 66.667 0.00 0.00 39.13 3.27
541 542 2.675371 GCTCGGGGCTAGGGTTTT 59.325 61.111 0.00 0.00 38.06 2.43
548 549 0.179702 GGGCTAGGGTTTTACCTCCG 59.820 60.000 0.00 0.00 42.09 4.63
554 555 1.681076 GGTTTTACCTCCGGAGCCA 59.319 57.895 26.87 12.58 34.73 4.75
593 594 3.601537 AGGAGGAAGAGGGGAAACTAGTA 59.398 47.826 0.00 0.00 0.00 1.82
600 601 6.156429 GGAAGAGGGGAAACTAGTATCTTTGA 59.844 42.308 0.00 0.00 0.00 2.69
603 604 6.960542 AGAGGGGAAACTAGTATCTTTGAAGA 59.039 38.462 0.00 0.00 39.78 2.87
1346 1358 5.408299 TCGTACCATCTCAACTTCACATTTG 59.592 40.000 0.00 0.00 0.00 2.32
1466 1478 3.674753 CCATCATTCGTTTTGCAAGTTCC 59.325 43.478 0.00 0.00 0.00 3.62
1959 1974 3.883997 GGGACGAAGCAAATGCAAA 57.116 47.368 8.28 0.00 45.16 3.68
1960 1975 2.147436 GGGACGAAGCAAATGCAAAA 57.853 45.000 8.28 0.00 45.16 2.44
2009 2024 1.870055 CTGCATTGTGCCACCAGGAC 61.870 60.000 0.00 0.00 44.23 3.85
2019 2034 1.545428 GCCACCAGGACATTCAGTTCA 60.545 52.381 0.00 0.00 36.89 3.18
2067 2082 8.241497 TCCTCATTTAGCTTCATAAAATGCAT 57.759 30.769 12.20 0.00 39.39 3.96
2127 2173 6.454795 TGCCCTTTTTCTACTGCATTTTAAG 58.545 36.000 0.00 0.00 0.00 1.85
2234 2280 8.654230 TTTCATTTGCATGTTAAGCACTTAAA 57.346 26.923 4.48 0.00 42.54 1.52
2251 2297 7.449704 AGCACTTAAAGTGGAATCTCTTTGATT 59.550 33.333 0.00 0.00 46.01 2.57
2342 2398 5.991328 TTCTGTAAAGAGTTGCTGTTCAG 57.009 39.130 0.00 0.00 0.00 3.02
2375 2431 5.064452 CCAATACTCTTCTCAATGCACTGAC 59.936 44.000 0.00 0.00 0.00 3.51
2821 2881 3.316308 GGTCACATGCTGAAAGTGTTCTT 59.684 43.478 0.00 0.00 35.30 2.52
2829 2889 7.175467 ACATGCTGAAAGTGTTCTTCAATATGA 59.825 33.333 12.11 0.00 35.30 2.15
2885 2946 3.436700 TGCACGATCCACATACTACAG 57.563 47.619 0.00 0.00 0.00 2.74
3158 3222 9.908152 CCGTAAAAGAAGTTCCATAATTTTTCT 57.092 29.630 0.00 0.00 0.00 2.52
3170 3234 7.470192 TCCATAATTTTTCTCTTCTTGACCCT 58.530 34.615 0.00 0.00 0.00 4.34
3225 3291 9.708222 CCGAATATTAATTGACTTTCTCAACAG 57.292 33.333 0.00 0.00 41.87 3.16
3235 3301 8.506168 TTGACTTTCTCAACAGTAGTGAAAAT 57.494 30.769 4.09 0.00 33.65 1.82
3266 3346 4.019174 AGGGTTTGATGTGCTCCTATTTG 58.981 43.478 0.00 0.00 0.00 2.32
3268 3348 3.763897 GGTTTGATGTGCTCCTATTTGGT 59.236 43.478 0.00 0.00 37.07 3.67
3269 3349 4.380867 GGTTTGATGTGCTCCTATTTGGTG 60.381 45.833 0.00 0.00 37.07 4.17
3270 3350 3.719268 TGATGTGCTCCTATTTGGTGT 57.281 42.857 0.00 0.00 37.07 4.16
3271 3351 4.835284 TGATGTGCTCCTATTTGGTGTA 57.165 40.909 0.00 0.00 37.07 2.90
3272 3352 4.769688 TGATGTGCTCCTATTTGGTGTAG 58.230 43.478 0.00 0.00 37.07 2.74
3273 3353 2.985896 TGTGCTCCTATTTGGTGTAGC 58.014 47.619 0.00 0.00 34.74 3.58
3274 3354 2.304470 TGTGCTCCTATTTGGTGTAGCA 59.696 45.455 0.00 0.00 39.81 3.49
3275 3355 3.054434 TGTGCTCCTATTTGGTGTAGCAT 60.054 43.478 0.00 0.00 42.62 3.79
3276 3356 4.163268 TGTGCTCCTATTTGGTGTAGCATA 59.837 41.667 0.00 0.00 42.62 3.14
3277 3357 5.163205 TGTGCTCCTATTTGGTGTAGCATAT 60.163 40.000 0.00 0.00 42.62 1.78
3278 3358 5.180117 GTGCTCCTATTTGGTGTAGCATATG 59.820 44.000 0.00 0.00 42.62 1.78
3279 3359 5.071653 TGCTCCTATTTGGTGTAGCATATGA 59.928 40.000 6.97 0.00 38.00 2.15
3280 3360 6.176183 GCTCCTATTTGGTGTAGCATATGAT 58.824 40.000 6.97 1.82 34.43 2.45
3281 3361 7.038373 TGCTCCTATTTGGTGTAGCATATGATA 60.038 37.037 6.97 0.55 38.00 2.15
3282 3362 7.278868 GCTCCTATTTGGTGTAGCATATGATAC 59.721 40.741 21.51 21.51 34.43 2.24
3283 3363 7.620880 TCCTATTTGGTGTAGCATATGATACC 58.379 38.462 24.38 15.62 33.69 2.73
3284 3364 7.236640 TCCTATTTGGTGTAGCATATGATACCA 59.763 37.037 24.38 17.85 36.49 3.25
3285 3365 8.049117 CCTATTTGGTGTAGCATATGATACCAT 58.951 37.037 24.38 10.43 37.95 3.55
3286 3366 7.692460 ATTTGGTGTAGCATATGATACCATG 57.308 36.000 24.38 0.00 37.95 3.66
3287 3367 5.164620 TGGTGTAGCATATGATACCATGG 57.835 43.478 24.38 11.19 36.18 3.66
3288 3368 4.843516 TGGTGTAGCATATGATACCATGGA 59.156 41.667 24.38 6.37 36.18 3.41
3289 3369 5.309282 TGGTGTAGCATATGATACCATGGAA 59.691 40.000 24.38 5.71 36.18 3.53
3696 3790 6.983474 ATTGTTTGGTTTTGTTCTTCTTGG 57.017 33.333 0.00 0.00 0.00 3.61
3718 3812 2.542595 TCGTTTTCTGCGAAGTTCTTCC 59.457 45.455 0.56 1.80 35.28 3.46
3811 3905 3.304996 CGGAGAAGATAGTGCATCGTGAT 60.305 47.826 0.00 0.00 38.81 3.06
3901 3995 0.249398 TCGAGGCTTCAAACCCTAGC 59.751 55.000 0.00 0.00 0.00 3.42
3919 4013 1.225376 GCGACATGACGGGTGAAACA 61.225 55.000 18.67 0.00 39.98 2.83
3950 4044 2.629051 GTTACATGGCACCTGAGGTAC 58.371 52.381 2.59 0.00 32.11 3.34
3972 4066 6.591750 ACTAACCATCTGGAGATATTACCG 57.408 41.667 2.55 0.00 38.94 4.02
4027 4122 2.093537 TTGGGCCGTGTTGCATTTCC 62.094 55.000 0.00 0.00 0.00 3.13
4037 4132 2.100584 TGTTGCATTTCCTTGTTTCGCT 59.899 40.909 0.00 0.00 0.00 4.93
4082 4178 3.988517 CCTCCTCCGATATTAGTTTTCGC 59.011 47.826 0.00 0.00 0.00 4.70
4133 4233 4.456280 TGATACATCTGTTTGAGCGACT 57.544 40.909 0.00 0.00 0.00 4.18
4134 4234 4.176271 TGATACATCTGTTTGAGCGACTG 58.824 43.478 0.00 0.00 0.00 3.51
4395 4496 0.514691 CAGGCTCTTGTTTCTGACGC 59.485 55.000 0.00 0.00 0.00 5.19
4408 4513 0.034059 CTGACGCCTTCTGAACCACT 59.966 55.000 0.00 0.00 0.00 4.00
4832 4987 4.279145 AGGATCAAGCTCGGAGTTTAGTA 58.721 43.478 6.79 0.00 0.00 1.82
4844 4999 5.354513 TCGGAGTTTAGTATGAGTCTGACAG 59.645 44.000 10.88 0.00 0.00 3.51
4870 5025 0.966920 AGGTCACAGGTGGTCTTACG 59.033 55.000 0.00 0.00 0.00 3.18
4876 5031 1.254026 CAGGTGGTCTTACGGTCTCA 58.746 55.000 0.00 0.00 0.00 3.27
4894 5049 0.036952 CATGGTCTGAAGCGGACACT 60.037 55.000 8.49 0.00 41.15 3.55
5065 5220 0.535553 GGGCGTGTTTGGTAACCTGA 60.536 55.000 0.00 0.00 33.15 3.86
5133 5288 0.040958 CTGGCTGCGAAGAAACACAC 60.041 55.000 0.00 0.00 0.00 3.82
5154 5309 2.025441 CGGTGGTGTTTGGTTGCG 59.975 61.111 0.00 0.00 0.00 4.85
5156 5311 2.415426 GTGGTGTTTGGTTGCGGG 59.585 61.111 0.00 0.00 0.00 6.13
5162 5317 1.299850 GTTTGGTTGCGGGCTTGTC 60.300 57.895 0.00 0.00 0.00 3.18
5163 5318 1.454847 TTTGGTTGCGGGCTTGTCT 60.455 52.632 0.00 0.00 0.00 3.41
5164 5319 0.179015 TTTGGTTGCGGGCTTGTCTA 60.179 50.000 0.00 0.00 0.00 2.59
5165 5320 0.605319 TTGGTTGCGGGCTTGTCTAG 60.605 55.000 0.00 0.00 0.00 2.43
5179 5334 2.703416 TGTCTAGGCAGATGCAAAGTG 58.297 47.619 7.19 0.00 44.36 3.16
5184 5339 0.953727 GGCAGATGCAAAGTGTGTGA 59.046 50.000 7.19 0.00 44.36 3.58
5262 5419 3.777478 TCATAAGCCGGAGTCTTAAACG 58.223 45.455 5.05 0.00 29.62 3.60
5265 5422 0.249398 AGCCGGAGTCTTAAACGCAT 59.751 50.000 5.05 0.00 0.00 4.73
5286 5443 6.618308 CGCATAGTTAAACGATAAAACAGTCG 59.382 38.462 0.00 0.00 43.13 4.18
5295 5452 0.040781 TAAAACAGTCGCGGCAAAGC 60.041 50.000 15.58 0.00 0.00 3.51
5335 5492 6.582672 GCAAAAGTCTTAGGTGCAAAGATAAC 59.417 38.462 2.78 0.00 35.53 1.89
5392 5549 0.465460 TTGCACTTGGTCACCACCTC 60.465 55.000 0.00 0.00 44.17 3.85
5464 5621 1.825474 CTTGATGGTGACGAGGTACCT 59.175 52.381 16.26 16.26 37.84 3.08
5466 5623 1.272258 TGATGGTGACGAGGTACCTGA 60.272 52.381 22.10 0.00 37.84 3.86
5475 5632 2.959707 ACGAGGTACCTGATCTTGATCC 59.040 50.000 22.10 0.00 0.00 3.36
5487 5644 1.001974 TCTTGATCCGGTGAACAGTGG 59.998 52.381 0.00 0.00 0.00 4.00
5497 5654 1.603739 GAACAGTGGTGAAGGGGGC 60.604 63.158 0.00 0.00 0.00 5.80
5500 5657 4.938756 AGTGGTGAAGGGGGCCCA 62.939 66.667 26.86 0.00 38.92 5.36
5515 5672 1.047801 GCCCAACCCTTGTCAAACAT 58.952 50.000 0.00 0.00 0.00 2.71
5517 5674 2.038659 CCCAACCCTTGTCAAACATGT 58.961 47.619 0.00 0.00 0.00 3.21
5520 5677 2.071778 ACCCTTGTCAAACATGTGCT 57.928 45.000 0.00 0.00 0.00 4.40
5523 5680 2.101249 CCCTTGTCAAACATGTGCTTGT 59.899 45.455 0.00 0.00 0.00 3.16
5524 5681 3.430651 CCCTTGTCAAACATGTGCTTGTT 60.431 43.478 0.00 0.00 41.49 2.83
5525 5682 3.552699 CCTTGTCAAACATGTGCTTGTTG 59.447 43.478 0.00 0.00 39.68 3.33
5535 5692 3.921119 TGTGCTTGTTGTTGATCATCC 57.079 42.857 0.00 0.00 0.00 3.51
5549 5706 0.970937 TCATCCAGACCGTCACCCTC 60.971 60.000 0.40 0.00 0.00 4.30
5558 5715 2.642254 CGTCACCCTCCAGGCGTAA 61.642 63.158 0.00 0.00 40.58 3.18
5567 5724 2.030958 CCAGGCGTAACCGGTGTTC 61.031 63.158 8.52 0.12 46.52 3.18
5576 5733 0.391597 AACCGGTGTTCGTCATCAGT 59.608 50.000 8.52 0.00 37.11 3.41
5589 5746 6.280855 TCGTCATCAGTTTGAATTCCTCTA 57.719 37.500 2.27 0.00 0.00 2.43
5594 5751 5.073311 TCAGTTTGAATTCCTCTAGGACG 57.927 43.478 2.27 0.00 45.39 4.79
5595 5752 4.527038 TCAGTTTGAATTCCTCTAGGACGT 59.473 41.667 2.27 0.00 45.39 4.34
5621 5778 4.780815 TGAAGTGATTGGTGAACTCAAGT 58.219 39.130 0.00 0.00 0.00 3.16
5622 5779 5.192927 TGAAGTGATTGGTGAACTCAAGTT 58.807 37.500 0.00 0.00 41.64 2.66
5627 5784 6.205464 AGTGATTGGTGAACTCAAGTTACATG 59.795 38.462 0.00 0.00 38.56 3.21
5641 5798 1.496444 TACATGGGCAGGCACTCCAA 61.496 55.000 0.00 0.00 35.90 3.53
5643 5800 1.076485 ATGGGCAGGCACTCCAATC 60.076 57.895 0.00 0.00 35.90 2.67
5647 5804 1.751927 GCAGGCACTCCAATCTGGG 60.752 63.158 0.00 0.00 38.32 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.234908 AGCGGAGAAGTGAGCTATTGTT 59.765 45.455 0.00 0.00 38.29 2.83
2 3 2.468831 GAGCGGAGAAGTGAGCTATTG 58.531 52.381 0.00 0.00 40.39 1.90
6 7 1.188219 TTGGAGCGGAGAAGTGAGCT 61.188 55.000 0.00 0.00 43.33 4.09
7 8 0.107945 ATTGGAGCGGAGAAGTGAGC 60.108 55.000 0.00 0.00 0.00 4.26
8 9 2.393271 AATTGGAGCGGAGAAGTGAG 57.607 50.000 0.00 0.00 0.00 3.51
9 10 2.426522 CAAATTGGAGCGGAGAAGTGA 58.573 47.619 0.00 0.00 0.00 3.41
10 11 1.135575 GCAAATTGGAGCGGAGAAGTG 60.136 52.381 0.00 0.00 0.00 3.16
11 12 1.168714 GCAAATTGGAGCGGAGAAGT 58.831 50.000 0.00 0.00 0.00 3.01
12 13 1.131883 CTGCAAATTGGAGCGGAGAAG 59.868 52.381 0.68 0.00 39.47 2.85
13 14 1.167851 CTGCAAATTGGAGCGGAGAA 58.832 50.000 0.68 0.00 39.47 2.87
14 15 0.324614 TCTGCAAATTGGAGCGGAGA 59.675 50.000 9.74 0.00 40.96 3.71
15 16 1.167851 TTCTGCAAATTGGAGCGGAG 58.832 50.000 9.74 0.00 45.90 4.63
16 17 1.614996 TTTCTGCAAATTGGAGCGGA 58.385 45.000 9.74 5.49 43.90 5.54
17 18 2.061028 GTTTTCTGCAAATTGGAGCGG 58.939 47.619 9.74 0.00 35.65 5.52
18 19 2.061028 GGTTTTCTGCAAATTGGAGCG 58.939 47.619 9.74 0.00 35.65 5.03
19 20 2.416747 GGGTTTTCTGCAAATTGGAGC 58.583 47.619 9.74 0.00 35.65 4.70
20 21 2.634453 AGGGGTTTTCTGCAAATTGGAG 59.366 45.455 8.26 8.26 37.15 3.86
21 22 2.688477 AGGGGTTTTCTGCAAATTGGA 58.312 42.857 0.00 0.00 0.00 3.53
22 23 3.490439 AAGGGGTTTTCTGCAAATTGG 57.510 42.857 0.00 0.00 0.00 3.16
23 24 8.260114 AGATAATAAGGGGTTTTCTGCAAATTG 58.740 33.333 0.00 0.00 0.00 2.32
24 25 8.379428 AGATAATAAGGGGTTTTCTGCAAATT 57.621 30.769 0.00 0.00 0.00 1.82
25 26 7.978099 AGATAATAAGGGGTTTTCTGCAAAT 57.022 32.000 0.00 0.00 0.00 2.32
26 27 7.790782 AAGATAATAAGGGGTTTTCTGCAAA 57.209 32.000 0.00 0.00 0.00 3.68
34 35 9.309224 GGTTGCATATAAGATAATAAGGGGTTT 57.691 33.333 0.00 0.00 0.00 3.27
35 36 7.610305 CGGTTGCATATAAGATAATAAGGGGTT 59.390 37.037 0.00 0.00 0.00 4.11
36 37 7.110155 CGGTTGCATATAAGATAATAAGGGGT 58.890 38.462 0.00 0.00 0.00 4.95
37 38 6.038271 GCGGTTGCATATAAGATAATAAGGGG 59.962 42.308 0.00 0.00 42.15 4.79
38 39 7.016361 GCGGTTGCATATAAGATAATAAGGG 57.984 40.000 0.00 0.00 42.15 3.95
55 56 4.115199 AGGGAGGGATGCGGTTGC 62.115 66.667 0.00 0.00 43.20 4.17
56 57 2.190578 GAGGGAGGGATGCGGTTG 59.809 66.667 0.00 0.00 0.00 3.77
57 58 2.285368 TGAGGGAGGGATGCGGTT 60.285 61.111 0.00 0.00 0.00 4.44
58 59 3.083997 GTGAGGGAGGGATGCGGT 61.084 66.667 0.00 0.00 0.00 5.68
59 60 3.866582 GGTGAGGGAGGGATGCGG 61.867 72.222 0.00 0.00 0.00 5.69
60 61 2.765807 AGGTGAGGGAGGGATGCG 60.766 66.667 0.00 0.00 0.00 4.73
61 62 1.059006 ATGAGGTGAGGGAGGGATGC 61.059 60.000 0.00 0.00 0.00 3.91
62 63 1.055040 GATGAGGTGAGGGAGGGATG 58.945 60.000 0.00 0.00 0.00 3.51
63 64 0.644380 TGATGAGGTGAGGGAGGGAT 59.356 55.000 0.00 0.00 0.00 3.85
64 65 0.417437 TTGATGAGGTGAGGGAGGGA 59.583 55.000 0.00 0.00 0.00 4.20
65 66 1.289160 TTTGATGAGGTGAGGGAGGG 58.711 55.000 0.00 0.00 0.00 4.30
66 67 2.040278 TGTTTTGATGAGGTGAGGGAGG 59.960 50.000 0.00 0.00 0.00 4.30
67 68 3.341823 CTGTTTTGATGAGGTGAGGGAG 58.658 50.000 0.00 0.00 0.00 4.30
68 69 2.553028 GCTGTTTTGATGAGGTGAGGGA 60.553 50.000 0.00 0.00 0.00 4.20
69 70 1.815003 GCTGTTTTGATGAGGTGAGGG 59.185 52.381 0.00 0.00 0.00 4.30
70 71 1.815003 GGCTGTTTTGATGAGGTGAGG 59.185 52.381 0.00 0.00 0.00 3.86
71 72 2.486982 CAGGCTGTTTTGATGAGGTGAG 59.513 50.000 6.28 0.00 0.00 3.51
72 73 2.106338 TCAGGCTGTTTTGATGAGGTGA 59.894 45.455 15.27 0.00 0.00 4.02
73 74 2.486982 CTCAGGCTGTTTTGATGAGGTG 59.513 50.000 15.27 0.00 34.97 4.00
74 75 2.373169 TCTCAGGCTGTTTTGATGAGGT 59.627 45.455 15.27 0.00 38.32 3.85
75 76 3.063510 TCTCAGGCTGTTTTGATGAGG 57.936 47.619 15.27 0.00 38.32 3.86
76 77 5.640189 ATTTCTCAGGCTGTTTTGATGAG 57.360 39.130 15.27 1.94 38.97 2.90
77 78 8.985315 ATATATTTCTCAGGCTGTTTTGATGA 57.015 30.769 15.27 0.51 0.00 2.92
80 81 9.859427 CAAAATATATTTCTCAGGCTGTTTTGA 57.141 29.630 20.47 11.25 35.82 2.69
81 82 9.859427 TCAAAATATATTTCTCAGGCTGTTTTG 57.141 29.630 19.66 19.66 35.37 2.44
83 84 9.247861 ACTCAAAATATATTTCTCAGGCTGTTT 57.752 29.630 15.27 1.21 0.00 2.83
84 85 8.680903 CACTCAAAATATATTTCTCAGGCTGTT 58.319 33.333 15.27 0.00 0.00 3.16
85 86 8.049117 TCACTCAAAATATATTTCTCAGGCTGT 58.951 33.333 15.27 0.00 0.00 4.40
86 87 8.442632 TCACTCAAAATATATTTCTCAGGCTG 57.557 34.615 8.58 8.58 0.00 4.85
87 88 9.466497 TTTCACTCAAAATATATTTCTCAGGCT 57.534 29.630 11.08 0.00 0.00 4.58
150 151 7.382218 CACAAACTTGAAAGAAAACACTCTTGT 59.618 33.333 0.00 0.00 35.79 3.16
151 152 7.594758 TCACAAACTTGAAAGAAAACACTCTTG 59.405 33.333 0.00 0.00 35.79 3.02
152 153 7.657336 TCACAAACTTGAAAGAAAACACTCTT 58.343 30.769 0.00 0.00 37.24 2.85
153 154 7.214467 TCACAAACTTGAAAGAAAACACTCT 57.786 32.000 0.00 0.00 0.00 3.24
154 155 7.381139 TGTTCACAAACTTGAAAGAAAACACTC 59.619 33.333 0.00 0.00 37.24 3.51
155 156 7.206687 TGTTCACAAACTTGAAAGAAAACACT 58.793 30.769 0.00 0.00 37.24 3.55
156 157 7.401484 TGTTCACAAACTTGAAAGAAAACAC 57.599 32.000 0.00 0.00 37.24 3.32
157 158 7.708752 ACTTGTTCACAAACTTGAAAGAAAACA 59.291 29.630 0.00 0.00 37.24 2.83
158 159 8.072238 ACTTGTTCACAAACTTGAAAGAAAAC 57.928 30.769 0.00 0.00 37.24 2.43
159 160 9.187455 GTACTTGTTCACAAACTTGAAAGAAAA 57.813 29.630 0.00 0.00 37.24 2.29
160 161 8.573035 AGTACTTGTTCACAAACTTGAAAGAAA 58.427 29.630 0.00 0.00 37.24 2.52
161 162 8.106247 AGTACTTGTTCACAAACTTGAAAGAA 57.894 30.769 0.00 0.00 37.24 2.52
162 163 7.681939 AGTACTTGTTCACAAACTTGAAAGA 57.318 32.000 0.00 0.00 37.24 2.52
164 165 9.997482 GAATAGTACTTGTTCACAAACTTGAAA 57.003 29.630 0.00 0.00 37.24 2.69
165 166 9.391006 AGAATAGTACTTGTTCACAAACTTGAA 57.609 29.630 17.72 0.00 36.30 2.69
166 167 8.958119 AGAATAGTACTTGTTCACAAACTTGA 57.042 30.769 17.72 0.00 36.30 3.02
172 173 9.268268 CCAAAGTAGAATAGTACTTGTTCACAA 57.732 33.333 17.72 0.00 41.47 3.33
173 174 7.386848 GCCAAAGTAGAATAGTACTTGTTCACA 59.613 37.037 17.72 7.00 41.47 3.58
174 175 7.386848 TGCCAAAGTAGAATAGTACTTGTTCAC 59.613 37.037 17.72 14.09 41.47 3.18
175 176 7.446769 TGCCAAAGTAGAATAGTACTTGTTCA 58.553 34.615 17.72 6.28 41.47 3.18
176 177 7.900782 TGCCAAAGTAGAATAGTACTTGTTC 57.099 36.000 0.00 6.64 41.47 3.18
177 178 8.863872 AATGCCAAAGTAGAATAGTACTTGTT 57.136 30.769 0.00 0.00 41.47 2.83
178 179 8.863872 AAATGCCAAAGTAGAATAGTACTTGT 57.136 30.769 0.00 0.00 41.47 3.16
181 182 8.244113 GCAAAAATGCCAAAGTAGAATAGTACT 58.756 33.333 0.00 0.00 34.56 2.73
182 183 8.026607 TGCAAAAATGCCAAAGTAGAATAGTAC 58.973 33.333 0.00 0.00 0.00 2.73
183 184 8.116651 TGCAAAAATGCCAAAGTAGAATAGTA 57.883 30.769 0.00 0.00 0.00 1.82
184 185 6.991938 TGCAAAAATGCCAAAGTAGAATAGT 58.008 32.000 0.00 0.00 0.00 2.12
185 186 7.384660 TGTTGCAAAAATGCCAAAGTAGAATAG 59.615 33.333 0.00 0.00 0.00 1.73
186 187 7.212976 TGTTGCAAAAATGCCAAAGTAGAATA 58.787 30.769 0.00 0.00 0.00 1.75
187 188 6.054295 TGTTGCAAAAATGCCAAAGTAGAAT 58.946 32.000 0.00 0.00 0.00 2.40
188 189 5.423015 TGTTGCAAAAATGCCAAAGTAGAA 58.577 33.333 0.00 0.00 0.00 2.10
189 190 5.016051 TGTTGCAAAAATGCCAAAGTAGA 57.984 34.783 0.00 0.00 0.00 2.59
190 191 5.731599 TTGTTGCAAAAATGCCAAAGTAG 57.268 34.783 0.00 0.00 0.00 2.57
191 192 6.073331 GCTATTGTTGCAAAAATGCCAAAGTA 60.073 34.615 22.67 1.58 0.00 2.24
192 193 5.277925 GCTATTGTTGCAAAAATGCCAAAGT 60.278 36.000 22.67 0.00 0.00 2.66
193 194 5.049267 AGCTATTGTTGCAAAAATGCCAAAG 60.049 36.000 22.67 13.40 0.00 2.77
194 195 4.820716 AGCTATTGTTGCAAAAATGCCAAA 59.179 33.333 22.67 3.63 0.00 3.28
195 196 4.387598 AGCTATTGTTGCAAAAATGCCAA 58.612 34.783 22.67 12.02 0.00 4.52
196 197 3.995705 GAGCTATTGTTGCAAAAATGCCA 59.004 39.130 22.67 4.33 0.00 4.92
197 198 3.995705 TGAGCTATTGTTGCAAAAATGCC 59.004 39.130 22.67 13.67 0.00 4.40
198 199 4.687483 AGTGAGCTATTGTTGCAAAAATGC 59.313 37.500 22.67 21.27 0.00 3.56
199 200 6.643770 AGAAGTGAGCTATTGTTGCAAAAATG 59.356 34.615 22.67 14.07 0.00 2.32
200 201 6.752168 AGAAGTGAGCTATTGTTGCAAAAAT 58.248 32.000 18.63 18.63 0.00 1.82
201 202 6.147864 AGAAGTGAGCTATTGTTGCAAAAA 57.852 33.333 4.10 4.10 0.00 1.94
202 203 5.278463 GGAGAAGTGAGCTATTGTTGCAAAA 60.278 40.000 0.00 0.00 0.00 2.44
203 204 4.216257 GGAGAAGTGAGCTATTGTTGCAAA 59.784 41.667 0.00 0.00 0.00 3.68
204 205 3.753272 GGAGAAGTGAGCTATTGTTGCAA 59.247 43.478 0.00 0.00 0.00 4.08
205 206 3.338249 GGAGAAGTGAGCTATTGTTGCA 58.662 45.455 0.00 0.00 0.00 4.08
206 207 2.349886 CGGAGAAGTGAGCTATTGTTGC 59.650 50.000 0.00 0.00 0.00 4.17
207 208 2.349886 GCGGAGAAGTGAGCTATTGTTG 59.650 50.000 0.00 0.00 0.00 3.33
208 209 2.234908 AGCGGAGAAGTGAGCTATTGTT 59.765 45.455 0.00 0.00 38.29 2.83
209 210 1.827969 AGCGGAGAAGTGAGCTATTGT 59.172 47.619 0.00 0.00 38.29 2.71
210 211 2.468831 GAGCGGAGAAGTGAGCTATTG 58.531 52.381 0.00 0.00 40.39 1.90
211 212 1.410882 GGAGCGGAGAAGTGAGCTATT 59.589 52.381 0.00 0.00 40.39 1.73
212 213 1.036707 GGAGCGGAGAAGTGAGCTAT 58.963 55.000 0.00 0.00 40.39 2.97
213 214 0.323451 TGGAGCGGAGAAGTGAGCTA 60.323 55.000 0.00 0.00 40.39 3.32
214 215 1.188219 TTGGAGCGGAGAAGTGAGCT 61.188 55.000 0.00 0.00 43.33 4.09
215 216 0.107945 ATTGGAGCGGAGAAGTGAGC 60.108 55.000 0.00 0.00 0.00 4.26
216 217 2.393271 AATTGGAGCGGAGAAGTGAG 57.607 50.000 0.00 0.00 0.00 3.51
217 218 2.426522 CAAATTGGAGCGGAGAAGTGA 58.573 47.619 0.00 0.00 0.00 3.41
218 219 1.135575 GCAAATTGGAGCGGAGAAGTG 60.136 52.381 0.00 0.00 0.00 3.16
219 220 1.168714 GCAAATTGGAGCGGAGAAGT 58.831 50.000 0.00 0.00 0.00 3.01
220 221 1.131883 CTGCAAATTGGAGCGGAGAAG 59.868 52.381 0.68 0.00 39.47 2.85
221 222 1.167851 CTGCAAATTGGAGCGGAGAA 58.832 50.000 0.68 0.00 39.47 2.87
222 223 0.324614 TCTGCAAATTGGAGCGGAGA 59.675 50.000 9.74 0.00 40.96 3.71
223 224 1.167851 TTCTGCAAATTGGAGCGGAG 58.832 50.000 9.74 0.00 45.90 4.63
224 225 1.614996 TTTCTGCAAATTGGAGCGGA 58.385 45.000 9.74 5.49 43.90 5.54
225 226 2.061028 GTTTTCTGCAAATTGGAGCGG 58.939 47.619 9.74 0.00 35.65 5.52
226 227 2.061028 GGTTTTCTGCAAATTGGAGCG 58.939 47.619 9.74 0.00 35.65 5.03
227 228 2.416747 GGGTTTTCTGCAAATTGGAGC 58.583 47.619 9.74 0.00 35.65 4.70
228 229 2.634453 AGGGGTTTTCTGCAAATTGGAG 59.366 45.455 8.26 8.26 37.15 3.86
229 230 2.688477 AGGGGTTTTCTGCAAATTGGA 58.312 42.857 0.00 0.00 0.00 3.53
230 231 3.490439 AAGGGGTTTTCTGCAAATTGG 57.510 42.857 0.00 0.00 0.00 3.16
231 232 8.260114 AGATAATAAGGGGTTTTCTGCAAATTG 58.740 33.333 0.00 0.00 0.00 2.32
232 233 8.379428 AGATAATAAGGGGTTTTCTGCAAATT 57.621 30.769 0.00 0.00 0.00 1.82
233 234 7.978099 AGATAATAAGGGGTTTTCTGCAAAT 57.022 32.000 0.00 0.00 0.00 2.32
234 235 7.790782 AAGATAATAAGGGGTTTTCTGCAAA 57.209 32.000 0.00 0.00 0.00 3.68
242 243 9.309224 GGTTGCATATAAGATAATAAGGGGTTT 57.691 33.333 0.00 0.00 0.00 3.27
243 244 7.610305 CGGTTGCATATAAGATAATAAGGGGTT 59.390 37.037 0.00 0.00 0.00 4.11
244 245 7.110155 CGGTTGCATATAAGATAATAAGGGGT 58.890 38.462 0.00 0.00 0.00 4.95
245 246 6.038271 GCGGTTGCATATAAGATAATAAGGGG 59.962 42.308 0.00 0.00 42.15 4.79
246 247 7.016361 GCGGTTGCATATAAGATAATAAGGG 57.984 40.000 0.00 0.00 42.15 3.95
263 264 4.115199 AGGGAGGGATGCGGTTGC 62.115 66.667 0.00 0.00 43.20 4.17
264 265 2.190578 GAGGGAGGGATGCGGTTG 59.809 66.667 0.00 0.00 0.00 3.77
265 266 2.285368 TGAGGGAGGGATGCGGTT 60.285 61.111 0.00 0.00 0.00 4.44
266 267 3.083997 GTGAGGGAGGGATGCGGT 61.084 66.667 0.00 0.00 0.00 5.68
267 268 3.866582 GGTGAGGGAGGGATGCGG 61.867 72.222 0.00 0.00 0.00 5.69
268 269 2.765807 AGGTGAGGGAGGGATGCG 60.766 66.667 0.00 0.00 0.00 4.73
269 270 1.059006 ATGAGGTGAGGGAGGGATGC 61.059 60.000 0.00 0.00 0.00 3.91
270 271 1.055040 GATGAGGTGAGGGAGGGATG 58.945 60.000 0.00 0.00 0.00 3.51
271 272 0.644380 TGATGAGGTGAGGGAGGGAT 59.356 55.000 0.00 0.00 0.00 3.85
272 273 0.417437 TTGATGAGGTGAGGGAGGGA 59.583 55.000 0.00 0.00 0.00 4.20
273 274 1.289160 TTTGATGAGGTGAGGGAGGG 58.711 55.000 0.00 0.00 0.00 4.30
274 275 2.040278 TGTTTTGATGAGGTGAGGGAGG 59.960 50.000 0.00 0.00 0.00 4.30
275 276 3.341823 CTGTTTTGATGAGGTGAGGGAG 58.658 50.000 0.00 0.00 0.00 4.30
276 277 2.553028 GCTGTTTTGATGAGGTGAGGGA 60.553 50.000 0.00 0.00 0.00 4.20
277 278 1.815003 GCTGTTTTGATGAGGTGAGGG 59.185 52.381 0.00 0.00 0.00 4.30
278 279 1.815003 GGCTGTTTTGATGAGGTGAGG 59.185 52.381 0.00 0.00 0.00 3.86
279 280 2.486982 CAGGCTGTTTTGATGAGGTGAG 59.513 50.000 6.28 0.00 0.00 3.51
280 281 2.106338 TCAGGCTGTTTTGATGAGGTGA 59.894 45.455 15.27 0.00 0.00 4.02
281 282 2.486982 CTCAGGCTGTTTTGATGAGGTG 59.513 50.000 15.27 0.00 34.97 4.00
282 283 2.373169 TCTCAGGCTGTTTTGATGAGGT 59.627 45.455 15.27 0.00 38.32 3.85
283 284 3.063510 TCTCAGGCTGTTTTGATGAGG 57.936 47.619 15.27 0.00 38.32 3.86
284 285 5.640189 ATTTCTCAGGCTGTTTTGATGAG 57.360 39.130 15.27 1.94 38.97 2.90
285 286 8.985315 ATATATTTCTCAGGCTGTTTTGATGA 57.015 30.769 15.27 0.51 0.00 2.92
288 289 9.859427 CAAAATATATTTCTCAGGCTGTTTTGA 57.141 29.630 20.47 11.25 35.82 2.69
289 290 9.859427 TCAAAATATATTTCTCAGGCTGTTTTG 57.141 29.630 19.66 19.66 35.37 2.44
291 292 9.247861 ACTCAAAATATATTTCTCAGGCTGTTT 57.752 29.630 15.27 1.21 0.00 2.83
292 293 8.680903 CACTCAAAATATATTTCTCAGGCTGTT 58.319 33.333 15.27 0.00 0.00 3.16
293 294 8.049117 TCACTCAAAATATATTTCTCAGGCTGT 58.951 33.333 15.27 0.00 0.00 4.40
294 295 8.442632 TCACTCAAAATATATTTCTCAGGCTG 57.557 34.615 8.58 8.58 0.00 4.85
295 296 9.466497 TTTCACTCAAAATATATTTCTCAGGCT 57.534 29.630 11.08 0.00 0.00 4.58
358 359 7.382218 CACAAACTTGAAAGAAAACACTCTTGT 59.618 33.333 0.00 0.00 35.79 3.16
359 360 7.594758 TCACAAACTTGAAAGAAAACACTCTTG 59.405 33.333 0.00 0.00 35.79 3.02
360 361 7.657336 TCACAAACTTGAAAGAAAACACTCTT 58.343 30.769 0.00 0.00 37.24 2.85
361 362 7.214467 TCACAAACTTGAAAGAAAACACTCT 57.786 32.000 0.00 0.00 0.00 3.24
362 363 7.381139 TGTTCACAAACTTGAAAGAAAACACTC 59.619 33.333 0.00 0.00 37.24 3.51
363 364 7.206687 TGTTCACAAACTTGAAAGAAAACACT 58.793 30.769 0.00 0.00 37.24 3.55
364 365 7.401484 TGTTCACAAACTTGAAAGAAAACAC 57.599 32.000 0.00 0.00 37.24 3.32
365 366 7.708752 ACTTGTTCACAAACTTGAAAGAAAACA 59.291 29.630 0.00 0.00 37.24 2.83
366 367 8.072238 ACTTGTTCACAAACTTGAAAGAAAAC 57.928 30.769 0.00 0.00 37.24 2.43
367 368 9.187455 GTACTTGTTCACAAACTTGAAAGAAAA 57.813 29.630 0.00 0.00 37.24 2.29
368 369 8.573035 AGTACTTGTTCACAAACTTGAAAGAAA 58.427 29.630 0.00 0.00 37.24 2.52
369 370 8.106247 AGTACTTGTTCACAAACTTGAAAGAA 57.894 30.769 0.00 0.00 37.24 2.52
370 371 7.681939 AGTACTTGTTCACAAACTTGAAAGA 57.318 32.000 0.00 0.00 37.24 2.52
372 373 9.997482 GAATAGTACTTGTTCACAAACTTGAAA 57.003 29.630 0.00 0.00 37.24 2.69
373 374 9.391006 AGAATAGTACTTGTTCACAAACTTGAA 57.609 29.630 17.72 0.00 36.30 2.69
374 375 8.958119 AGAATAGTACTTGTTCACAAACTTGA 57.042 30.769 17.72 0.00 36.30 3.02
380 381 9.268268 CCAAAGTAGAATAGTACTTGTTCACAA 57.732 33.333 17.72 0.00 41.47 3.33
381 382 8.644216 TCCAAAGTAGAATAGTACTTGTTCACA 58.356 33.333 17.72 7.00 41.47 3.58
382 383 9.654663 ATCCAAAGTAGAATAGTACTTGTTCAC 57.345 33.333 17.72 14.09 41.47 3.18
383 384 9.871238 GATCCAAAGTAGAATAGTACTTGTTCA 57.129 33.333 17.72 6.28 41.47 3.18
384 385 9.315525 GGATCCAAAGTAGAATAGTACTTGTTC 57.684 37.037 6.95 6.64 41.47 3.18
385 386 7.980099 CGGATCCAAAGTAGAATAGTACTTGTT 59.020 37.037 13.41 0.00 41.47 2.83
386 387 7.123847 ACGGATCCAAAGTAGAATAGTACTTGT 59.876 37.037 13.41 0.00 41.47 3.16
387 388 7.490000 ACGGATCCAAAGTAGAATAGTACTTG 58.510 38.462 13.41 0.00 41.47 3.16
388 389 7.657023 ACGGATCCAAAGTAGAATAGTACTT 57.343 36.000 13.41 0.00 43.68 2.24
389 390 7.490000 CAACGGATCCAAAGTAGAATAGTACT 58.510 38.462 13.41 0.00 34.56 2.73
390 391 6.200475 GCAACGGATCCAAAGTAGAATAGTAC 59.800 42.308 13.41 0.00 0.00 2.73
391 392 6.127281 TGCAACGGATCCAAAGTAGAATAGTA 60.127 38.462 13.41 0.00 0.00 1.82
392 393 5.116882 GCAACGGATCCAAAGTAGAATAGT 58.883 41.667 13.41 0.00 0.00 2.12
393 394 5.116180 TGCAACGGATCCAAAGTAGAATAG 58.884 41.667 13.41 0.00 0.00 1.73
394 395 5.092554 TGCAACGGATCCAAAGTAGAATA 57.907 39.130 13.41 0.00 0.00 1.75
395 396 3.950397 TGCAACGGATCCAAAGTAGAAT 58.050 40.909 13.41 0.00 0.00 2.40
396 397 3.410631 TGCAACGGATCCAAAGTAGAA 57.589 42.857 13.41 0.00 0.00 2.10
397 398 3.071479 GTTGCAACGGATCCAAAGTAGA 58.929 45.455 14.90 0.00 0.00 2.59
398 399 3.471495 GTTGCAACGGATCCAAAGTAG 57.529 47.619 14.90 0.00 0.00 2.57
411 412 2.655044 GTGCCTGTGCGTTGCAAC 60.655 61.111 19.89 19.89 41.47 4.17
412 413 2.014064 AATGTGCCTGTGCGTTGCAA 62.014 50.000 0.00 0.00 41.47 4.08
413 414 2.488403 AATGTGCCTGTGCGTTGCA 61.488 52.632 0.00 0.00 41.78 4.08
414 415 2.017783 CAATGTGCCTGTGCGTTGC 61.018 57.895 0.00 0.00 41.78 4.17
415 416 2.017783 GCAATGTGCCTGTGCGTTG 61.018 57.895 0.00 0.00 41.78 4.10
416 417 0.888736 TAGCAATGTGCCTGTGCGTT 60.889 50.000 0.00 0.00 46.52 4.84
417 418 1.300971 CTAGCAATGTGCCTGTGCGT 61.301 55.000 0.00 0.00 46.52 5.24
418 419 1.300971 ACTAGCAATGTGCCTGTGCG 61.301 55.000 0.00 0.00 46.52 5.34
419 420 0.449388 GACTAGCAATGTGCCTGTGC 59.551 55.000 0.00 0.00 46.52 4.57
420 421 1.812235 TGACTAGCAATGTGCCTGTG 58.188 50.000 0.00 0.00 46.52 3.66
421 422 2.224621 ACTTGACTAGCAATGTGCCTGT 60.225 45.455 0.00 0.00 46.52 4.00
422 423 2.417933 GACTTGACTAGCAATGTGCCTG 59.582 50.000 0.00 0.00 46.52 4.85
423 424 2.304180 AGACTTGACTAGCAATGTGCCT 59.696 45.455 0.00 0.00 46.52 4.75
424 425 2.675348 GAGACTTGACTAGCAATGTGCC 59.325 50.000 0.00 0.00 46.52 5.01
425 426 3.329386 TGAGACTTGACTAGCAATGTGC 58.671 45.455 0.00 0.00 45.46 4.57
426 427 5.929697 TTTGAGACTTGACTAGCAATGTG 57.070 39.130 0.00 0.00 35.59 3.21
427 428 7.161404 TGTATTTGAGACTTGACTAGCAATGT 58.839 34.615 0.00 0.00 35.59 2.71
428 429 7.601073 TGTATTTGAGACTTGACTAGCAATG 57.399 36.000 0.00 0.00 35.59 2.82
429 430 8.798859 AATGTATTTGAGACTTGACTAGCAAT 57.201 30.769 0.00 0.00 35.59 3.56
430 431 8.097038 AGAATGTATTTGAGACTTGACTAGCAA 58.903 33.333 0.00 0.00 34.73 3.91
431 432 7.615403 AGAATGTATTTGAGACTTGACTAGCA 58.385 34.615 0.00 0.00 0.00 3.49
432 433 7.761704 TGAGAATGTATTTGAGACTTGACTAGC 59.238 37.037 0.00 0.00 0.00 3.42
433 434 9.814899 ATGAGAATGTATTTGAGACTTGACTAG 57.185 33.333 0.00 0.00 0.00 2.57
434 435 9.809096 GATGAGAATGTATTTGAGACTTGACTA 57.191 33.333 0.00 0.00 0.00 2.59
435 436 8.538701 AGATGAGAATGTATTTGAGACTTGACT 58.461 33.333 0.00 0.00 0.00 3.41
436 437 8.715191 AGATGAGAATGTATTTGAGACTTGAC 57.285 34.615 0.00 0.00 0.00 3.18
437 438 8.534496 TGAGATGAGAATGTATTTGAGACTTGA 58.466 33.333 0.00 0.00 0.00 3.02
438 439 8.602328 GTGAGATGAGAATGTATTTGAGACTTG 58.398 37.037 0.00 0.00 0.00 3.16
439 440 8.538701 AGTGAGATGAGAATGTATTTGAGACTT 58.461 33.333 0.00 0.00 0.00 3.01
440 441 8.076910 AGTGAGATGAGAATGTATTTGAGACT 57.923 34.615 0.00 0.00 0.00 3.24
441 442 8.715191 AAGTGAGATGAGAATGTATTTGAGAC 57.285 34.615 0.00 0.00 0.00 3.36
442 443 9.159364 CAAAGTGAGATGAGAATGTATTTGAGA 57.841 33.333 0.00 0.00 0.00 3.27
443 444 9.159364 TCAAAGTGAGATGAGAATGTATTTGAG 57.841 33.333 0.00 0.00 31.45 3.02
444 445 9.676861 ATCAAAGTGAGATGAGAATGTATTTGA 57.323 29.630 0.00 0.00 37.35 2.69
471 472 4.517952 AAACATGATGCAAAATGGACGA 57.482 36.364 14.45 0.00 0.00 4.20
472 473 4.667161 GCAAAACATGATGCAAAATGGACG 60.667 41.667 14.45 3.86 42.12 4.79
475 476 3.738399 CGCAAAACATGATGCAAAATGG 58.262 40.909 18.06 0.97 42.68 3.16
506 507 3.574614 GAGCGCCTTCTCTCTATGAATC 58.425 50.000 2.29 0.00 0.00 2.52
512 513 1.824329 CCCGAGCGCCTTCTCTCTA 60.824 63.158 2.29 0.00 0.00 2.43
528 529 0.549950 GGAGGTAAAACCCTAGCCCC 59.450 60.000 0.00 0.00 39.75 5.80
564 565 1.990060 CCTCTTCCTCCTTGGCCGA 60.990 63.158 0.00 0.00 35.26 5.54
703 707 1.068741 GGCATGTACTCCCTCGGTAAG 59.931 57.143 0.00 0.00 0.00 2.34
708 712 1.622607 TTGGGGCATGTACTCCCTCG 61.623 60.000 14.95 0.00 42.25 4.63
1346 1358 1.286354 TTGGCAAGTAGTGTACGCGC 61.286 55.000 5.73 0.00 0.00 6.86
1466 1478 9.696917 AGAAAATAAAGAAGCAATGTTTACCAG 57.303 29.630 0.00 0.00 30.41 4.00
1959 1974 0.675633 GTTGTGGACAGGCAAGCATT 59.324 50.000 0.00 0.00 0.00 3.56
1960 1975 0.178981 AGTTGTGGACAGGCAAGCAT 60.179 50.000 0.00 0.00 0.00 3.79
2009 2024 4.556942 TTGCAACAGACTGAACTGAATG 57.443 40.909 10.08 10.73 40.63 2.67
2019 2034 7.986889 AGGATTTTATTGTTTTTGCAACAGACT 59.013 29.630 0.00 0.00 0.00 3.24
2154 2200 6.406177 GCCATGGAATGTGATAACTGACAAAT 60.406 38.462 18.40 0.00 44.81 2.32
2234 2280 6.983906 AAACCAAATCAAAGAGATTCCACT 57.016 33.333 0.00 0.00 46.09 4.00
2314 2362 9.087424 GAACAGCAACTCTTTACAGAAAATTTT 57.913 29.630 2.28 2.28 0.00 1.82
2315 2363 8.250332 TGAACAGCAACTCTTTACAGAAAATTT 58.750 29.630 0.00 0.00 0.00 1.82
2316 2364 7.771183 TGAACAGCAACTCTTTACAGAAAATT 58.229 30.769 0.00 0.00 0.00 1.82
2317 2365 7.333528 TGAACAGCAACTCTTTACAGAAAAT 57.666 32.000 0.00 0.00 0.00 1.82
2318 2366 6.751514 TGAACAGCAACTCTTTACAGAAAA 57.248 33.333 0.00 0.00 0.00 2.29
2342 2398 3.539604 AGAAGAGTATTGGCTGTCATGC 58.460 45.455 0.00 0.00 0.00 4.06
2375 2431 5.554883 CGCATTATTCATGAACAAAATGCGG 60.555 40.000 40.17 31.55 46.71 5.69
2821 2881 5.939447 TGTGGTTATGCTGGATCATATTGA 58.061 37.500 0.00 0.00 0.00 2.57
2829 2889 1.755265 GCCCATGTGGTTATGCTGGAT 60.755 52.381 0.00 0.00 36.04 3.41
2885 2946 4.240096 GGCCACATAATTCAGCATATTGC 58.760 43.478 0.00 0.00 45.46 3.56
3158 3222 3.964688 TGTTCTGTGTAGGGTCAAGAAGA 59.035 43.478 0.00 0.00 0.00 2.87
3225 3291 8.822855 CAAACCCTAAACCAAAATTTTCACTAC 58.177 33.333 0.00 0.00 0.00 2.73
3235 3301 4.407296 AGCACATCAAACCCTAAACCAAAA 59.593 37.500 0.00 0.00 0.00 2.44
3266 3346 5.420725 TCCATGGTATCATATGCTACACC 57.579 43.478 12.58 11.67 31.33 4.16
3268 3348 9.617523 CATATTTCCATGGTATCATATGCTACA 57.382 33.333 12.58 5.60 31.33 2.74
3269 3349 9.060347 CCATATTTCCATGGTATCATATGCTAC 57.940 37.037 12.58 7.99 40.62 3.58
3335 3415 8.528643 CCACAATGAGATGGATATATTGCAAAT 58.471 33.333 1.71 1.18 38.34 2.32
3380 3460 9.817809 TCGCAAAGTGAATATATAAAAGTCTCT 57.182 29.630 0.00 0.00 0.00 3.10
3382 3462 9.601217 ACTCGCAAAGTGAATATATAAAAGTCT 57.399 29.630 0.00 0.00 36.65 3.24
3648 3742 2.036256 CCCCTGGCAAGGTCAAGG 59.964 66.667 6.34 0.00 42.74 3.61
3696 3790 3.532950 GAAGAACTTCGCAGAAAACGAC 58.467 45.455 0.00 0.00 45.90 4.34
3743 3837 8.579850 TTCAAACATAAAGGTAGCAATGAGAT 57.420 30.769 8.38 0.00 0.00 2.75
3811 3905 6.091305 CGAGAAGCATATTTTCAGTCTTCACA 59.909 38.462 0.00 0.00 34.14 3.58
3901 3995 0.790207 CTGTTTCACCCGTCATGTCG 59.210 55.000 5.32 5.32 0.00 4.35
3919 4013 1.909700 CCATGTAACCAAGTGTGCCT 58.090 50.000 0.00 0.00 0.00 4.75
3950 4044 6.591750 ACGGTAATATCTCCAGATGGTTAG 57.408 41.667 0.00 0.00 36.05 2.34
3997 4091 5.474825 CAACACGGCCCAACTTAAAAATAT 58.525 37.500 0.00 0.00 0.00 1.28
4001 4095 1.202428 GCAACACGGCCCAACTTAAAA 60.202 47.619 0.00 0.00 0.00 1.52
4003 4097 0.752009 TGCAACACGGCCCAACTTAA 60.752 50.000 0.00 0.00 0.00 1.85
4037 4132 4.650972 AGTACTACCCATTGCTCCAAAA 57.349 40.909 0.00 0.00 0.00 2.44
4051 4146 7.619965 ACTAATATCGGAGGAGGTAGTACTAC 58.380 42.308 22.53 22.53 35.40 2.73
4065 4160 6.018262 CCATTTCAGCGAAAACTAATATCGGA 60.018 38.462 7.59 0.00 35.11 4.55
4066 4161 6.018262 TCCATTTCAGCGAAAACTAATATCGG 60.018 38.462 7.59 0.00 35.11 4.18
4133 4233 1.111116 CCTCCGTCCCCGTATTAGCA 61.111 60.000 0.00 0.00 0.00 3.49
4134 4234 1.664306 CCTCCGTCCCCGTATTAGC 59.336 63.158 0.00 0.00 0.00 3.09
4346 4446 4.815846 CCACAAGGGAAGGAAACATTTTTG 59.184 41.667 0.00 0.00 40.01 2.44
4395 4496 6.039270 TGTTATGTTTTCAGTGGTTCAGAAGG 59.961 38.462 0.00 0.00 0.00 3.46
4538 4681 2.284625 ACCACCTCGGCCATCTCA 60.285 61.111 2.24 0.00 39.03 3.27
4870 5025 0.460987 CCGCTTCAGACCATGAGACC 60.461 60.000 0.00 0.00 39.68 3.85
4876 5031 0.247736 GAGTGTCCGCTTCAGACCAT 59.752 55.000 0.00 0.00 33.09 3.55
4951 5106 0.678950 AAGTTGCATTCCAAACGGGG 59.321 50.000 0.00 0.00 34.68 5.73
5065 5220 1.897133 GTTAGGGGGCAAAAATCGGTT 59.103 47.619 0.00 0.00 0.00 4.44
5124 5279 2.177580 CCACCGTGCGTGTGTTTCT 61.178 57.895 10.52 0.00 41.26 2.52
5133 5288 2.766400 AACCAAACACCACCGTGCG 61.766 57.895 0.00 0.00 44.40 5.34
5154 5309 0.817229 GCATCTGCCTAGACAAGCCC 60.817 60.000 0.00 0.00 35.34 5.19
5156 5311 1.742761 TTGCATCTGCCTAGACAAGC 58.257 50.000 0.00 0.00 41.18 4.01
5162 5317 2.161012 CACACACTTTGCATCTGCCTAG 59.839 50.000 0.00 0.00 41.18 3.02
5163 5318 2.153645 CACACACTTTGCATCTGCCTA 58.846 47.619 0.00 0.00 41.18 3.93
5164 5319 0.956633 CACACACTTTGCATCTGCCT 59.043 50.000 0.00 0.00 41.18 4.75
5165 5320 0.953727 TCACACACTTTGCATCTGCC 59.046 50.000 0.00 0.00 41.18 4.85
5179 5334 4.235939 TGCATGTAACCAAACATCACAC 57.764 40.909 0.00 0.00 38.01 3.82
5233 5388 1.869767 CTCCGGCTTATGAGTTCATGC 59.130 52.381 0.00 1.00 37.15 4.06
5234 5389 3.126831 GACTCCGGCTTATGAGTTCATG 58.873 50.000 0.00 0.00 41.74 3.07
5235 5390 3.034635 AGACTCCGGCTTATGAGTTCAT 58.965 45.455 0.00 0.00 41.74 2.57
5236 5391 2.457598 AGACTCCGGCTTATGAGTTCA 58.542 47.619 0.00 0.00 41.74 3.18
5237 5392 3.528597 AAGACTCCGGCTTATGAGTTC 57.471 47.619 0.00 0.00 41.74 3.01
5262 5419 6.407181 GCGACTGTTTTATCGTTTAACTATGC 59.593 38.462 0.00 0.00 40.49 3.14
5265 5422 5.060816 CCGCGACTGTTTTATCGTTTAACTA 59.939 40.000 8.23 0.00 40.49 2.24
5295 5452 5.416952 AGACTTTTGCATAGGATGTTTCAGG 59.583 40.000 0.00 0.00 0.00 3.86
5328 5485 6.239402 GCCATGGATGCCTAAAATGTTATCTT 60.239 38.462 18.40 0.00 0.00 2.40
5335 5492 3.823281 TTGCCATGGATGCCTAAAATG 57.177 42.857 18.40 0.00 0.00 2.32
5425 5582 1.146263 CTGGCGACTCCCAATACCC 59.854 63.158 0.00 0.00 33.73 3.69
5429 5586 1.377725 CAAGCTGGCGACTCCCAAT 60.378 57.895 0.00 0.00 33.73 3.16
5464 5621 2.567169 ACTGTTCACCGGATCAAGATCA 59.433 45.455 9.46 2.66 39.54 2.92
5466 5623 2.355108 CCACTGTTCACCGGATCAAGAT 60.355 50.000 9.46 0.00 0.00 2.40
5475 5632 0.884704 CCCTTCACCACTGTTCACCG 60.885 60.000 0.00 0.00 0.00 4.94
5497 5654 2.038659 ACATGTTTGACAAGGGTTGGG 58.961 47.619 0.00 0.00 34.12 4.12
5500 5657 2.387757 AGCACATGTTTGACAAGGGTT 58.612 42.857 0.00 0.00 0.00 4.11
5507 5664 4.172505 TCAACAACAAGCACATGTTTGAC 58.827 39.130 15.51 0.00 41.44 3.18
5515 5672 3.220940 TGGATGATCAACAACAAGCACA 58.779 40.909 0.00 0.00 0.00 4.57
5517 5674 3.503363 GTCTGGATGATCAACAACAAGCA 59.497 43.478 0.00 0.00 0.00 3.91
5520 5677 3.073678 CGGTCTGGATGATCAACAACAA 58.926 45.455 0.00 0.00 0.00 2.83
5523 5680 2.301583 TGACGGTCTGGATGATCAACAA 59.698 45.455 9.88 0.00 0.00 2.83
5524 5681 1.899142 TGACGGTCTGGATGATCAACA 59.101 47.619 9.88 0.96 0.00 3.33
5525 5682 2.271800 GTGACGGTCTGGATGATCAAC 58.728 52.381 9.88 0.00 0.00 3.18
5535 5692 2.650116 CCTGGAGGGTGACGGTCTG 61.650 68.421 9.88 0.00 0.00 3.51
5549 5706 2.030958 GAACACCGGTTACGCCTGG 61.031 63.158 2.97 0.00 37.36 4.45
5558 5715 0.391597 AACTGATGACGAACACCGGT 59.608 50.000 0.00 0.00 43.93 5.28
5567 5724 5.521735 CCTAGAGGAATTCAAACTGATGACG 59.478 44.000 7.93 0.00 37.39 4.35
5589 5746 2.355108 CCAATCACTTCATCCACGTCCT 60.355 50.000 0.00 0.00 0.00 3.85
5594 5751 4.074970 AGTTCACCAATCACTTCATCCAC 58.925 43.478 0.00 0.00 0.00 4.02
5595 5752 4.202451 TGAGTTCACCAATCACTTCATCCA 60.202 41.667 0.00 0.00 0.00 3.41
5621 5778 1.302949 GGAGTGCCTGCCCATGTAA 59.697 57.895 0.00 0.00 0.00 2.41
5622 5779 1.496444 TTGGAGTGCCTGCCCATGTA 61.496 55.000 0.00 0.00 34.31 2.29
5627 5784 1.751927 CAGATTGGAGTGCCTGCCC 60.752 63.158 0.00 0.00 34.31 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.