Multiple sequence alignment - TraesCS3D01G222600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G222600 chr3D 100.000 7770 0 0 1 7770 303576234 303584003 0.000000e+00 14349.0
1 TraesCS3D01G222600 chr3D 86.538 312 39 3 6070 6379 608516622 608516312 2.690000e-89 340.0
2 TraesCS3D01G222600 chr3D 81.915 188 27 5 7050 7235 607008088 607008270 1.350000e-32 152.0
3 TraesCS3D01G222600 chr3D 100.000 32 0 0 5144 5175 303581346 303581377 8.420000e-05 60.2
4 TraesCS3D01G222600 chr3D 100.000 32 0 0 5113 5144 303581377 303581408 8.420000e-05 60.2
5 TraesCS3D01G222600 chr3B 95.056 1861 63 12 2621 4471 417732734 417730893 0.000000e+00 2900.0
6 TraesCS3D01G222600 chr3B 93.894 1343 60 10 127 1461 417735234 417733906 0.000000e+00 2006.0
7 TraesCS3D01G222600 chr3B 94.071 1147 47 9 1447 2573 417733880 417732735 0.000000e+00 1722.0
8 TraesCS3D01G222600 chr3B 94.281 647 33 4 6370 7014 417729135 417728491 0.000000e+00 987.0
9 TraesCS3D01G222600 chr3B 87.852 675 41 19 7123 7770 417728406 417727746 0.000000e+00 754.0
10 TraesCS3D01G222600 chr3B 85.849 636 38 17 4458 5092 417730394 417729810 5.120000e-176 628.0
11 TraesCS3D01G222600 chr3B 95.714 280 12 0 5336 5615 417729413 417729134 1.190000e-122 451.0
12 TraesCS3D01G222600 chr3B 89.167 240 23 3 4735 4973 341226774 341226537 5.900000e-76 296.0
13 TraesCS3D01G222600 chr3B 81.429 280 30 17 4683 4958 590449206 590448945 7.900000e-50 209.0
14 TraesCS3D01G222600 chr3B 95.652 69 1 2 5271 5337 417729509 417729441 8.240000e-20 110.0
15 TraesCS3D01G222600 chr3B 95.588 68 3 0 5178 5245 417729802 417729735 8.240000e-20 110.0
16 TraesCS3D01G222600 chr3B 91.045 67 4 2 5089 5155 417729804 417729868 1.070000e-13 89.8
17 TraesCS3D01G222600 chr3B 95.745 47 2 0 7017 7063 417728469 417728423 8.360000e-10 76.8
18 TraesCS3D01G222600 chr3A 94.836 1801 61 13 2636 4425 430794948 430793169 0.000000e+00 2782.0
19 TraesCS3D01G222600 chr3A 91.082 1469 76 20 868 2300 430796931 430795482 0.000000e+00 1936.0
20 TraesCS3D01G222600 chr3A 92.184 806 27 14 6404 7185 430791757 430790964 0.000000e+00 1107.0
21 TraesCS3D01G222600 chr3A 90.401 823 32 26 3 816 430798133 430797349 0.000000e+00 1038.0
22 TraesCS3D01G222600 chr3A 86.819 569 25 17 7236 7770 430790739 430790187 2.410000e-164 590.0
23 TraesCS3D01G222600 chr3A 85.467 578 34 13 4518 5093 430792804 430792275 2.450000e-154 556.0
24 TraesCS3D01G222600 chr3A 95.000 320 14 1 2297 2616 430795402 430795085 1.160000e-137 501.0
25 TraesCS3D01G222600 chr3A 87.207 469 15 7 5178 5602 430792268 430791801 7.010000e-135 492.0
26 TraesCS3D01G222600 chr3A 78.862 123 12 8 4683 4804 592141690 592141581 3.890000e-08 71.3
27 TraesCS3D01G222600 chr3A 78.862 123 12 8 4683 4804 592206360 592206251 3.890000e-08 71.3
28 TraesCS3D01G222600 chr2B 85.787 781 71 21 5617 6373 435160153 435159389 0.000000e+00 791.0
29 TraesCS3D01G222600 chr2B 85.193 466 34 8 5931 6373 219933663 219933210 5.530000e-121 446.0
30 TraesCS3D01G222600 chr2B 87.823 271 31 2 4683 4953 442571396 442571128 4.530000e-82 316.0
31 TraesCS3D01G222600 chr2B 84.012 344 34 17 5617 5943 219934024 219933685 2.110000e-80 311.0
32 TraesCS3D01G222600 chr2B 87.449 247 30 1 4700 4946 349919731 349919486 4.590000e-72 283.0
33 TraesCS3D01G222600 chr2B 82.243 321 43 12 5990 6300 669380688 669381004 1.660000e-66 265.0
34 TraesCS3D01G222600 chr2B 80.791 177 27 5 7070 7245 699214386 699214216 1.760000e-26 132.0
35 TraesCS3D01G222600 chr2B 81.081 148 23 5 7091 7237 25846881 25846738 6.370000e-21 113.0
36 TraesCS3D01G222600 chr7D 84.244 787 58 25 5617 6373 568645058 568644308 0.000000e+00 706.0
37 TraesCS3D01G222600 chr7D 81.851 832 62 33 5617 6373 381390048 381390865 1.110000e-172 617.0
38 TraesCS3D01G222600 chr5B 82.286 796 78 33 5617 6373 656718144 656717373 1.420000e-176 630.0
39 TraesCS3D01G222600 chr5B 85.915 71 8 2 4984 5052 155714510 155714580 3.010000e-09 75.0
40 TraesCS3D01G222600 chr5A 83.437 483 45 13 5918 6371 664976632 664977108 4.340000e-112 416.0
41 TraesCS3D01G222600 chr5A 81.818 418 58 13 5962 6373 546783825 546784230 1.250000e-87 335.0
42 TraesCS3D01G222600 chr5A 79.167 168 29 5 7069 7235 67480565 67480727 2.290000e-20 111.0
43 TraesCS3D01G222600 chr5A 78.261 161 24 9 7069 7225 113609678 113609525 8.300000e-15 93.5
44 TraesCS3D01G222600 chr1A 86.387 382 43 8 5994 6371 22682763 22683139 7.260000e-110 409.0
45 TraesCS3D01G222600 chr1A 84.364 275 43 0 4683 4957 428579683 428579957 3.570000e-68 270.0
46 TraesCS3D01G222600 chr1D 90.941 287 23 3 5616 5900 102514247 102513962 4.400000e-102 383.0
47 TraesCS3D01G222600 chr1D 88.636 308 33 2 6064 6371 10942649 10942344 2.650000e-99 374.0
48 TraesCS3D01G222600 chr1D 89.199 287 29 2 5616 5901 481344637 481344352 2.670000e-94 357.0
49 TraesCS3D01G222600 chr1D 86.667 315 36 5 5615 5927 471128753 471129063 2.080000e-90 344.0
50 TraesCS3D01G222600 chr1D 85.304 313 38 7 6067 6375 467028915 467029223 4.530000e-82 316.0
51 TraesCS3D01G222600 chr1D 85.199 277 39 2 4683 4958 331307485 331307760 4.590000e-72 283.0
52 TraesCS3D01G222600 chr1D 83.453 278 45 1 4682 4958 113521329 113521052 2.780000e-64 257.0
53 TraesCS3D01G222600 chr7A 86.646 322 38 4 6048 6369 509814014 509814330 1.240000e-92 351.0
54 TraesCS3D01G222600 chr7A 82.278 316 44 9 5619 5922 184026280 184025965 5.980000e-66 263.0
55 TraesCS3D01G222600 chr5D 87.248 298 37 1 6077 6373 385450306 385450603 9.660000e-89 339.0
56 TraesCS3D01G222600 chr5D 83.226 310 41 10 5617 5919 51684474 51684169 2.760000e-69 274.0
57 TraesCS3D01G222600 chr5D 77.848 158 29 5 7069 7224 339983193 339983040 8.300000e-15 93.5
58 TraesCS3D01G222600 chr6A 84.969 326 43 3 6048 6373 71060201 71060520 7.520000e-85 326.0
59 TraesCS3D01G222600 chr7B 89.272 261 25 3 5619 5878 73993680 73993422 2.700000e-84 324.0
60 TraesCS3D01G222600 chr7B 81.879 149 21 5 7082 7229 657612082 657611939 3.810000e-23 121.0
61 TraesCS3D01G222600 chr2D 88.839 224 25 0 6089 6312 560585861 560585638 7.680000e-70 276.0
62 TraesCS3D01G222600 chr1B 84.727 275 42 0 4683 4957 445752089 445752363 7.680000e-70 276.0
63 TraesCS3D01G222600 chr1B 85.000 260 37 2 4700 4958 119319563 119319305 5.980000e-66 263.0
64 TraesCS3D01G222600 chr6B 82.000 200 34 2 4462 4660 316606248 316606050 1.340000e-37 169.0
65 TraesCS3D01G222600 chr2A 84.211 114 17 1 7123 7235 182567698 182567585 8.240000e-20 110.0
66 TraesCS3D01G222600 chr4B 84.211 114 15 3 7123 7235 10586123 10586234 2.960000e-19 108.0
67 TraesCS3D01G222600 chr4B 97.436 39 1 0 7067 7105 482001330 482001368 5.030000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G222600 chr3D 303576234 303584003 7769 False 4823.133333 14349 100.0000 1 7770 3 chr3D.!!$F2 7769
1 TraesCS3D01G222600 chr3B 417727746 417735234 7488 True 974.480000 2900 93.3702 127 7770 10 chr3B.!!$R3 7643
2 TraesCS3D01G222600 chr3A 430790187 430798133 7946 True 1125.250000 2782 90.3745 3 7770 8 chr3A.!!$R3 7767
3 TraesCS3D01G222600 chr2B 435159389 435160153 764 True 791.000000 791 85.7870 5617 6373 1 chr2B.!!$R3 756
4 TraesCS3D01G222600 chr2B 219933210 219934024 814 True 378.500000 446 84.6025 5617 6373 2 chr2B.!!$R6 756
5 TraesCS3D01G222600 chr7D 568644308 568645058 750 True 706.000000 706 84.2440 5617 6373 1 chr7D.!!$R1 756
6 TraesCS3D01G222600 chr7D 381390048 381390865 817 False 617.000000 617 81.8510 5617 6373 1 chr7D.!!$F1 756
7 TraesCS3D01G222600 chr5B 656717373 656718144 771 True 630.000000 630 82.2860 5617 6373 1 chr5B.!!$R1 756

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
25 26 0.037512 TCGAAATTACCGCCGGTTCA 60.038 50.000 16.82 1.23 37.09 3.18 F
393 403 0.321741 CCAATGGCCTGCATTGCAAA 60.322 50.000 13.18 0.00 38.41 3.68 F
1321 1708 0.105760 AGTGATCCCGATCTCTGCCT 60.106 55.000 8.16 0.00 39.40 4.75 F
1438 1844 1.193462 TACGAAAAAGGGAGCGGGGA 61.193 55.000 0.00 0.00 0.00 4.81 F
3242 3930 1.467734 CTCAGCTTTCCTGCACATGAC 59.532 52.381 0.00 0.00 41.50 3.06 F
4606 5815 0.108585 TGTGAACCCTCAACCTCAGC 59.891 55.000 0.00 0.00 31.88 4.26 F
5149 6361 0.036010 CAGCCGTGTCCCTCTCAATT 60.036 55.000 0.00 0.00 0.00 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1048 1435 0.653114 GAAGAAGGCGGCGAATCTTC 59.347 55.000 26.50 26.5 40.50 2.87 R
1417 1823 1.022982 CCCGCTCCCTTTTTCGTACC 61.023 60.000 0.00 0.0 0.00 3.34 R
3242 3930 1.535462 CTGCCACAAAGGGTTAACTCG 59.465 52.381 5.42 0.0 38.09 4.18 R
3362 4050 1.813513 ACATGTGCCTACAAGTCTGC 58.186 50.000 0.00 0.0 40.84 4.26 R
5130 6342 0.036010 AATTGAGAGGGACACGGCTG 60.036 55.000 0.00 0.0 0.00 4.85 R
6206 7761 0.250234 CCATCTTCTTCCTCACGCCA 59.750 55.000 0.00 0.0 0.00 5.69 R
7108 8700 1.270907 ACTCTGCTAGGAGTGGTTGG 58.729 55.000 16.35 3.0 43.89 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 0.037512 TCGAAATTACCGCCGGTTCA 60.038 50.000 16.82 1.23 37.09 3.18
29 30 1.844544 AATTACCGCCGGTTCACCCT 61.845 55.000 16.82 0.00 37.09 4.34
33 34 2.742372 CGCCGGTTCACCCTCAAG 60.742 66.667 1.90 0.00 0.00 3.02
48 49 2.989840 CCTCAAGCGGCGATATTTCTAG 59.010 50.000 12.98 0.00 0.00 2.43
52 53 1.272769 AGCGGCGATATTTCTAGTCCC 59.727 52.381 12.98 0.00 0.00 4.46
58 61 2.028020 CGATATTTCTAGTCCCTGGGGC 60.028 54.545 10.01 10.01 34.68 5.80
92 95 5.957771 AGGTGCTCTAATGTTATTGGAGA 57.042 39.130 16.09 2.52 0.00 3.71
96 99 7.500559 AGGTGCTCTAATGTTATTGGAGAAATC 59.499 37.037 16.09 6.28 0.00 2.17
100 103 7.095439 GCTCTAATGTTATTGGAGAAATCGAGG 60.095 40.741 16.09 0.00 0.00 4.63
101 104 7.217200 TCTAATGTTATTGGAGAAATCGAGGG 58.783 38.462 0.00 0.00 0.00 4.30
102 105 4.837093 TGTTATTGGAGAAATCGAGGGT 57.163 40.909 0.00 0.00 0.00 4.34
171 180 1.688811 CCCACTCGAATTTCCCCCA 59.311 57.895 0.00 0.00 0.00 4.96
223 233 9.927668 ATCAGTCACAGAAAAAGAAAAGAAAAA 57.072 25.926 0.00 0.00 0.00 1.94
391 401 1.481901 AACCAATGGCCTGCATTGCA 61.482 50.000 11.50 11.50 38.37 4.08
392 402 1.297039 CCAATGGCCTGCATTGCAA 59.703 52.632 13.18 0.00 38.41 4.08
393 403 0.321741 CCAATGGCCTGCATTGCAAA 60.322 50.000 13.18 0.00 38.41 3.68
394 404 1.524848 CAATGGCCTGCATTGCAAAA 58.475 45.000 13.18 0.00 38.41 2.44
395 405 1.466950 CAATGGCCTGCATTGCAAAAG 59.533 47.619 13.18 5.77 38.41 2.27
400 410 2.815503 GGCCTGCATTGCAAAAGAAAAT 59.184 40.909 13.18 0.00 38.41 1.82
497 516 3.054503 GTCCCTGTGCTGCTGCTG 61.055 66.667 17.00 0.77 40.48 4.41
602 621 1.837439 TGGCTCCACTGTATCGGAATT 59.163 47.619 0.00 0.00 0.00 2.17
680 699 0.461693 CTGCCTCTGCTTCTACCAGC 60.462 60.000 0.00 0.00 40.55 4.85
739 760 2.822561 TCTGTTCTGTAGTGGAGCTCTG 59.177 50.000 14.64 0.00 0.00 3.35
886 1273 0.884514 TCACTGGCGAGAGAGACAAG 59.115 55.000 1.44 0.00 0.00 3.16
890 1277 1.132262 CTGGCGAGAGAGACAAGAGAC 59.868 57.143 0.00 0.00 0.00 3.36
940 1327 0.382515 GAGTGCTGTAGGACTAGGCG 59.617 60.000 6.02 0.00 46.89 5.52
1044 1431 4.272100 CTTGTGGCCAAGCAATGC 57.728 55.556 7.24 0.00 41.51 3.56
1081 1468 3.696548 GCCTTCTTCCCCTCAAGTAATTG 59.303 47.826 0.00 0.00 0.00 2.32
1085 1472 3.055385 TCTTCCCCTCAAGTAATTGACCG 60.055 47.826 0.56 0.00 0.00 4.79
1128 1515 1.968493 TGTTTCAGACCTAACCTCGCT 59.032 47.619 0.00 0.00 0.00 4.93
1155 1542 2.542595 ACTTGTCTAGAACAAAACCGCG 59.457 45.455 0.00 0.00 46.95 6.46
1226 1613 9.855361 CATACAAGCTTGATTAGTTCTATTTCG 57.145 33.333 32.50 0.00 0.00 3.46
1227 1614 9.817809 ATACAAGCTTGATTAGTTCTATTTCGA 57.182 29.630 32.50 0.00 0.00 3.71
1228 1615 8.723942 ACAAGCTTGATTAGTTCTATTTCGAT 57.276 30.769 32.50 0.33 0.00 3.59
1229 1616 9.167311 ACAAGCTTGATTAGTTCTATTTCGATT 57.833 29.630 32.50 0.00 0.00 3.34
1230 1617 9.994432 CAAGCTTGATTAGTTCTATTTCGATTT 57.006 29.630 22.31 0.00 0.00 2.17
1258 1645 2.928116 GCCCACTAATCAGTTCGTGTAC 59.072 50.000 0.00 0.00 31.16 2.90
1310 1697 3.845781 TCTGCCTATTTGAGTGATCCC 57.154 47.619 0.00 0.00 0.00 3.85
1321 1708 0.105760 AGTGATCCCGATCTCTGCCT 60.106 55.000 8.16 0.00 39.40 4.75
1417 1823 6.198966 GGCAAGGAATAGATTAAATTGTTGCG 59.801 38.462 0.00 0.00 35.57 4.85
1438 1844 1.193462 TACGAAAAAGGGAGCGGGGA 61.193 55.000 0.00 0.00 0.00 4.81
1613 2067 6.689554 TGATATCTGCTGCAATTTCACAAAA 58.310 32.000 3.02 0.00 0.00 2.44
1655 2109 4.494091 ACTGCTATTAAGGCTGTGATGT 57.506 40.909 12.45 0.00 39.64 3.06
1662 2116 2.936919 AAGGCTGTGATGTTGACTGA 57.063 45.000 0.00 0.00 0.00 3.41
1704 2158 6.006275 TCTCCTTTTGGGGATCTATTTCTG 57.994 41.667 0.00 0.00 46.01 3.02
1779 2233 4.259356 GTGTTTGGTTATAGGGTCCTGAC 58.741 47.826 0.00 0.00 0.00 3.51
1789 2243 5.836024 ATAGGGTCCTGACTTTGTTGTTA 57.164 39.130 0.00 0.00 0.00 2.41
2079 2551 5.329399 TGTTAATGCTTGGGTAAATGGACT 58.671 37.500 0.00 0.00 0.00 3.85
2218 2694 3.868757 TCTCAATCTTGTACTCCACCG 57.131 47.619 0.00 0.00 0.00 4.94
2397 2956 7.589958 TTTGCCTAATGGAAGTTTAGTTTCA 57.410 32.000 0.00 0.00 34.57 2.69
2434 2993 3.318017 CGAATGGACGGTCAGGATTATC 58.682 50.000 10.76 0.00 0.00 1.75
2534 3093 7.678171 AGGATAATTGGTCCTTGGTTTTTGTAT 59.322 33.333 8.07 0.00 43.52 2.29
2615 3174 9.846248 ATACTTTTGTCTAGAATTGCATCAAAC 57.154 29.630 0.00 0.00 0.00 2.93
2616 3175 7.715657 ACTTTTGTCTAGAATTGCATCAAACA 58.284 30.769 0.00 0.00 0.00 2.83
2617 3176 8.362639 ACTTTTGTCTAGAATTGCATCAAACAT 58.637 29.630 0.00 0.00 0.00 2.71
2682 3366 9.661187 CAACTTATGATAGTACCTACGTTAGTG 57.339 37.037 0.00 0.00 0.00 2.74
2690 3374 4.768968 AGTACCTACGTTAGTGTGTGGAAT 59.231 41.667 0.00 0.00 0.00 3.01
2705 3389 6.256975 GTGTGTGGAATGCGTAATCTTGTATA 59.743 38.462 0.00 0.00 0.00 1.47
2772 3456 7.840342 TTTTTGTTGATGTGTGCAAAATACT 57.160 28.000 0.00 0.00 39.52 2.12
2773 3457 7.462109 TTTTGTTGATGTGTGCAAAATACTC 57.538 32.000 0.00 0.00 36.35 2.59
2774 3458 6.389830 TTGTTGATGTGTGCAAAATACTCT 57.610 33.333 0.00 0.00 0.00 3.24
2775 3459 7.503521 TTGTTGATGTGTGCAAAATACTCTA 57.496 32.000 0.00 0.00 0.00 2.43
2776 3460 7.132694 TGTTGATGTGTGCAAAATACTCTAG 57.867 36.000 0.00 0.00 0.00 2.43
2777 3461 6.934083 TGTTGATGTGTGCAAAATACTCTAGA 59.066 34.615 0.00 0.00 0.00 2.43
2778 3462 7.607607 TGTTGATGTGTGCAAAATACTCTAGAT 59.392 33.333 0.00 0.00 0.00 1.98
2779 3463 9.098355 GTTGATGTGTGCAAAATACTCTAGATA 57.902 33.333 0.00 0.00 0.00 1.98
2780 3464 9.665719 TTGATGTGTGCAAAATACTCTAGATAA 57.334 29.630 0.00 0.00 0.00 1.75
3019 3707 6.942576 ACTTCAGATACCTTGCACAACTTAAT 59.057 34.615 0.00 0.00 0.00 1.40
3242 3930 1.467734 CTCAGCTTTCCTGCACATGAC 59.532 52.381 0.00 0.00 41.50 3.06
3444 4135 5.973565 AGCTTTGCGCATAAAGAATCAATAC 59.026 36.000 22.75 5.18 42.61 1.89
3475 4166 6.370994 GCATGATCTCCATACTCATTAGGTTG 59.629 42.308 0.00 0.00 33.31 3.77
3571 4263 1.885887 GTGCAATGGCTAACAGACCAA 59.114 47.619 0.00 0.00 39.96 3.67
3892 4585 0.458716 GTTCTCGTCAGTAGGCCTGC 60.459 60.000 17.99 15.82 41.25 4.85
3936 4629 0.847373 TTCCAGTGGCCACTTAACCA 59.153 50.000 36.06 15.20 40.20 3.67
4014 4707 4.202245 TCATGTACTGGCAGGTTAGTTC 57.798 45.455 20.34 0.00 0.00 3.01
4093 4786 5.582665 GGTTGTTGGCTTTTTCACACATAAA 59.417 36.000 0.00 0.00 0.00 1.40
4095 4788 7.201688 GGTTGTTGGCTTTTTCACACATAAAAT 60.202 33.333 0.00 0.00 0.00 1.82
4097 4790 7.692088 TGTTGGCTTTTTCACACATAAAATTG 58.308 30.769 0.00 0.00 0.00 2.32
4099 4792 7.475771 TGGCTTTTTCACACATAAAATTGTC 57.524 32.000 0.00 0.00 0.00 3.18
4100 4793 7.271511 TGGCTTTTTCACACATAAAATTGTCT 58.728 30.769 0.00 0.00 0.00 3.41
4101 4794 8.417106 TGGCTTTTTCACACATAAAATTGTCTA 58.583 29.630 0.00 0.00 0.00 2.59
4102 4795 9.255304 GGCTTTTTCACACATAAAATTGTCTAA 57.745 29.630 0.00 0.00 0.00 2.10
4108 4801 9.891828 TTCACACATAAAATTGTCTAATCACAC 57.108 29.630 0.00 0.00 0.00 3.82
4109 4802 9.283768 TCACACATAAAATTGTCTAATCACACT 57.716 29.630 0.00 0.00 0.00 3.55
4172 4865 4.174009 GACAATAGTAAGCGCTCACTGAA 58.826 43.478 23.84 4.31 0.00 3.02
4283 4976 1.026718 ATACTTGCTTGGACCGCAGC 61.027 55.000 8.30 8.30 38.80 5.25
4313 5006 1.904865 TACCTTGTCGGCAGTCGGT 60.905 57.895 11.57 11.57 39.77 4.69
4430 5127 9.057089 GGATGTCCACAAACTCCTTTAATATAG 57.943 37.037 0.00 0.00 35.64 1.31
4440 5137 5.033522 CTCCTTTAATATAGGGGAGGGGAG 58.966 50.000 0.00 0.00 39.67 4.30
4450 5147 2.203126 GAGGGGAGGCTGATTGCG 60.203 66.667 0.00 0.00 44.05 4.85
4452 5149 4.802051 GGGGAGGCTGATTGCGCA 62.802 66.667 5.66 5.66 44.05 6.09
4482 5691 2.590092 CATCTCCAACCGGACCCC 59.410 66.667 9.46 0.00 35.91 4.95
4505 5714 4.202419 CCCATTTTGTCCCTATATGTCCGA 60.202 45.833 0.00 0.00 0.00 4.55
4564 5773 0.251608 CCAACCGGACCCCTCAAATT 60.252 55.000 9.46 0.00 0.00 1.82
4586 5795 0.469917 CCTCATATGTCCGGGCTGTT 59.530 55.000 7.97 0.00 0.00 3.16
4589 5798 1.280710 TCATATGTCCGGGCTGTTTGT 59.719 47.619 7.97 0.00 0.00 2.83
4600 5809 1.067060 GGCTGTTTGTGAACCCTCAAC 59.933 52.381 0.00 0.00 34.80 3.18
4601 5810 1.067060 GCTGTTTGTGAACCCTCAACC 59.933 52.381 0.00 0.00 34.80 3.77
4602 5811 2.654863 CTGTTTGTGAACCCTCAACCT 58.345 47.619 0.00 0.00 34.80 3.50
4603 5812 2.618709 CTGTTTGTGAACCCTCAACCTC 59.381 50.000 0.00 0.00 34.80 3.85
4604 5813 2.025793 TGTTTGTGAACCCTCAACCTCA 60.026 45.455 0.00 0.00 34.80 3.86
4605 5814 2.618709 GTTTGTGAACCCTCAACCTCAG 59.381 50.000 0.00 0.00 31.88 3.35
4606 5815 0.108585 TGTGAACCCTCAACCTCAGC 59.891 55.000 0.00 0.00 31.88 4.26
4607 5816 0.606673 GTGAACCCTCAACCTCAGCC 60.607 60.000 0.00 0.00 31.88 4.85
4608 5817 1.002011 GAACCCTCAACCTCAGCCC 60.002 63.158 0.00 0.00 0.00 5.19
4609 5818 1.774217 AACCCTCAACCTCAGCCCA 60.774 57.895 0.00 0.00 0.00 5.36
4610 5819 1.142688 AACCCTCAACCTCAGCCCAT 61.143 55.000 0.00 0.00 0.00 4.00
4611 5820 1.077212 CCCTCAACCTCAGCCCATG 60.077 63.158 0.00 0.00 0.00 3.66
4612 5821 1.687612 CCTCAACCTCAGCCCATGT 59.312 57.895 0.00 0.00 0.00 3.21
4613 5822 0.911769 CCTCAACCTCAGCCCATGTA 59.088 55.000 0.00 0.00 0.00 2.29
4614 5823 1.492176 CCTCAACCTCAGCCCATGTAT 59.508 52.381 0.00 0.00 0.00 2.29
4615 5824 2.092212 CCTCAACCTCAGCCCATGTATT 60.092 50.000 0.00 0.00 0.00 1.89
4616 5825 2.947652 CTCAACCTCAGCCCATGTATTG 59.052 50.000 0.00 0.00 0.00 1.90
4617 5826 2.026641 CAACCTCAGCCCATGTATTGG 58.973 52.381 0.00 0.00 46.00 3.16
4639 5848 1.755783 GATACGAGGGTGTCCGGGT 60.756 63.158 0.00 0.00 38.33 5.28
4646 5855 3.552384 GGTGTCCGGGTGTGTCCA 61.552 66.667 0.00 0.00 38.11 4.02
4657 5866 3.050275 GTGTCCAAGCAGTCCGCC 61.050 66.667 0.00 0.00 44.04 6.13
4658 5867 3.555324 TGTCCAAGCAGTCCGCCA 61.555 61.111 0.00 0.00 44.04 5.69
4659 5868 3.050275 GTCCAAGCAGTCCGCCAC 61.050 66.667 0.00 0.00 44.04 5.01
4660 5869 3.555324 TCCAAGCAGTCCGCCACA 61.555 61.111 0.00 0.00 44.04 4.17
4661 5870 2.360350 CCAAGCAGTCCGCCACAT 60.360 61.111 0.00 0.00 44.04 3.21
4662 5871 2.401766 CCAAGCAGTCCGCCACATC 61.402 63.158 0.00 0.00 44.04 3.06
4663 5872 2.434884 AAGCAGTCCGCCACATCG 60.435 61.111 0.00 0.00 44.04 3.84
4691 5900 1.602237 CACCCTGGATGTAACGCCT 59.398 57.895 0.00 0.00 0.00 5.52
4723 5932 0.320421 CCGATTCCTGTCCGTTGTGT 60.320 55.000 0.00 0.00 0.00 3.72
4780 5989 2.438021 ACCAACACTAGTCTTTCCTGCA 59.562 45.455 0.00 0.00 0.00 4.41
4784 5993 2.434336 ACACTAGTCTTTCCTGCACACA 59.566 45.455 0.00 0.00 0.00 3.72
4787 5996 5.221641 ACACTAGTCTTTCCTGCACACATTA 60.222 40.000 0.00 0.00 0.00 1.90
4882 6091 4.274950 CGCTTAACTTTGAGGTTCCTTTCA 59.725 41.667 0.00 0.00 0.00 2.69
4966 6177 1.072173 CAGGATGTCACACTGGACCAA 59.928 52.381 0.00 0.00 36.97 3.67
4974 6185 3.065371 GTCACACTGGACCAACTTTTCTG 59.935 47.826 0.00 0.00 0.00 3.02
5058 6270 2.410322 ATTTGAGGGACACGGCTGCA 62.410 55.000 0.50 0.00 0.00 4.41
5089 6301 0.827507 TTGAGGGTTCAAAGCAGGCC 60.828 55.000 0.00 0.00 40.26 5.19
5093 6305 4.404654 GTTCAAAGCAGGCCCGCG 62.405 66.667 5.03 0.00 36.85 6.46
5094 6306 4.634703 TTCAAAGCAGGCCCGCGA 62.635 61.111 8.23 0.00 36.85 5.87
5109 6321 3.711842 CGACGCGCCTGCTTTGAA 61.712 61.111 5.73 0.00 39.65 2.69
5110 6322 2.127232 GACGCGCCTGCTTTGAAC 60.127 61.111 5.73 0.00 39.65 3.18
5111 6323 3.595108 GACGCGCCTGCTTTGAACC 62.595 63.158 5.73 0.00 39.65 3.62
5112 6324 4.404654 CGCGCCTGCTTTGAACCC 62.405 66.667 0.00 0.00 39.65 4.11
5113 6325 2.985847 GCGCCTGCTTTGAACCCT 60.986 61.111 0.00 0.00 38.39 4.34
5114 6326 2.982744 GCGCCTGCTTTGAACCCTC 61.983 63.158 0.00 0.00 38.39 4.30
5115 6327 1.600636 CGCCTGCTTTGAACCCTCA 60.601 57.895 0.00 0.00 0.00 3.86
5116 6328 1.172180 CGCCTGCTTTGAACCCTCAA 61.172 55.000 0.00 0.00 39.87 3.02
5117 6329 1.260544 GCCTGCTTTGAACCCTCAAT 58.739 50.000 0.00 0.00 41.22 2.57
5118 6330 1.620323 GCCTGCTTTGAACCCTCAATT 59.380 47.619 0.00 0.00 41.22 2.32
5119 6331 2.611224 GCCTGCTTTGAACCCTCAATTG 60.611 50.000 0.00 0.00 41.22 2.32
5120 6332 2.629617 CCTGCTTTGAACCCTCAATTGT 59.370 45.455 5.13 0.00 41.22 2.71
5121 6333 3.305608 CCTGCTTTGAACCCTCAATTGTC 60.306 47.826 5.13 0.00 41.22 3.18
5122 6334 2.627699 TGCTTTGAACCCTCAATTGTCC 59.372 45.455 5.13 0.00 41.22 4.02
5123 6335 2.351738 GCTTTGAACCCTCAATTGTCCG 60.352 50.000 5.13 0.00 41.22 4.79
5124 6336 1.243902 TTGAACCCTCAATTGTCCGC 58.756 50.000 5.13 0.00 36.62 5.54
5125 6337 0.608035 TGAACCCTCAATTGTCCGCC 60.608 55.000 5.13 0.00 0.00 6.13
5126 6338 1.304134 AACCCTCAATTGTCCGCCC 60.304 57.895 5.13 0.00 0.00 6.13
5127 6339 2.824041 CCCTCAATTGTCCGCCCG 60.824 66.667 5.13 0.00 0.00 6.13
5128 6340 3.508840 CCTCAATTGTCCGCCCGC 61.509 66.667 5.13 0.00 0.00 6.13
5129 6341 3.864686 CTCAATTGTCCGCCCGCG 61.865 66.667 5.13 0.00 39.44 6.46
5145 6357 4.803426 CGCAGCCGTGTCCCTCTC 62.803 72.222 0.00 0.00 0.00 3.20
5146 6358 3.695606 GCAGCCGTGTCCCTCTCA 61.696 66.667 0.00 0.00 0.00 3.27
5147 6359 3.059982 CAGCCGTGTCCCTCTCAA 58.940 61.111 0.00 0.00 0.00 3.02
5148 6360 1.599047 CAGCCGTGTCCCTCTCAAT 59.401 57.895 0.00 0.00 0.00 2.57
5149 6361 0.036010 CAGCCGTGTCCCTCTCAATT 60.036 55.000 0.00 0.00 0.00 2.32
5150 6362 0.036010 AGCCGTGTCCCTCTCAATTG 60.036 55.000 0.00 0.00 0.00 2.32
5151 6363 0.321653 GCCGTGTCCCTCTCAATTGT 60.322 55.000 5.13 0.00 0.00 2.71
5152 6364 1.726853 CCGTGTCCCTCTCAATTGTC 58.273 55.000 5.13 0.00 0.00 3.18
5153 6365 1.676014 CCGTGTCCCTCTCAATTGTCC 60.676 57.143 5.13 0.00 0.00 4.02
5154 6366 1.726853 GTGTCCCTCTCAATTGTCCG 58.273 55.000 5.13 0.00 0.00 4.79
5155 6367 0.036388 TGTCCCTCTCAATTGTCCGC 60.036 55.000 5.13 0.00 0.00 5.54
5156 6368 0.744771 GTCCCTCTCAATTGTCCGCC 60.745 60.000 5.13 0.00 0.00 6.13
5157 6369 1.452108 CCCTCTCAATTGTCCGCCC 60.452 63.158 5.13 0.00 0.00 6.13
5158 6370 1.815421 CCTCTCAATTGTCCGCCCG 60.815 63.158 5.13 0.00 0.00 6.13
5159 6371 2.435938 TCTCAATTGTCCGCCCGC 60.436 61.111 5.13 0.00 0.00 6.13
5160 6372 3.864686 CTCAATTGTCCGCCCGCG 61.865 66.667 5.13 0.00 39.44 6.46
5176 6388 4.680237 CGCAGCCGTGTCCCTCAA 62.680 66.667 0.00 0.00 0.00 3.02
5259 6483 7.824779 ACCAACTTCTTAAATAACTAGGCTCTG 59.175 37.037 0.00 0.00 0.00 3.35
5291 6705 0.467384 GCCTAGCATCTCTCTTGCCA 59.533 55.000 0.00 0.00 41.06 4.92
5397 6840 6.491403 AGTCAAGAAATTTCTACAATGGCTGT 59.509 34.615 20.76 0.33 42.47 4.40
5459 6902 2.919602 AGAAAAGGACCTAGGCAATGGA 59.080 45.455 9.30 0.00 0.00 3.41
5615 7058 1.867698 GCATCTTAGGCTGCGAGACTC 60.868 57.143 0.00 0.00 33.88 3.36
5662 7106 6.073331 CGTATAAGTGGTCAAACCCGTAAAAA 60.073 38.462 0.00 0.00 37.50 1.94
5734 7180 4.754372 AAAATCGTCCGACCCTTAAAAC 57.246 40.909 0.00 0.00 0.00 2.43
5788 7238 3.323979 ACCTGTGTATCTTCAGTTTCGGT 59.676 43.478 0.00 0.00 0.00 4.69
5789 7239 4.525487 ACCTGTGTATCTTCAGTTTCGGTA 59.475 41.667 0.00 0.00 0.00 4.02
5836 7286 2.594303 CAACGCTGGCAGTTGGGA 60.594 61.111 17.16 0.00 43.64 4.37
5967 7473 0.530744 AACCGTCGCATGAAGCTAGA 59.469 50.000 0.00 0.00 42.61 2.43
6159 7714 4.056125 CACGAGGAGGCAGTCGCA 62.056 66.667 0.00 0.00 39.89 5.10
6206 7761 2.370189 GGATGGAGGTCGAGATGGAAAT 59.630 50.000 0.00 0.00 0.00 2.17
6231 7786 4.926238 GCGTGAGGAAGAAGATGGTATATG 59.074 45.833 0.00 0.00 0.00 1.78
6279 7834 3.959535 TTATACGGGTTCTGTTCGGTT 57.040 42.857 0.00 0.00 0.00 4.44
6282 7837 2.943653 GGGTTCTGTTCGGTTGCG 59.056 61.111 0.00 0.00 0.00 4.85
6393 7948 4.060038 ACATGTTAATAGAGCCGGACAG 57.940 45.455 5.05 0.00 0.00 3.51
6423 7990 4.513442 TGTGGTACCATGAGCTACATTTC 58.487 43.478 19.72 0.25 37.07 2.17
6444 8012 5.643379 TCAGAACATTTCATAAAGGCACC 57.357 39.130 0.00 0.00 0.00 5.01
6485 8053 7.307160 GCTTAGCCCAAGTAACATTTTGTTTTC 60.307 37.037 0.00 0.00 36.98 2.29
6823 8393 6.887545 AGGGATATAAATGTTTTTGGTGACGA 59.112 34.615 0.00 0.00 0.00 4.20
6846 8416 6.816640 CGATTTCACAGTTAACCCAAGAGATA 59.183 38.462 0.88 0.00 0.00 1.98
6881 8451 0.250209 AGGTGCAGCTTGTGAGTGAG 60.250 55.000 13.85 0.00 0.00 3.51
6966 8539 5.680594 TGTAACTTACCCCGTGATTGTAT 57.319 39.130 0.00 0.00 0.00 2.29
7014 8587 4.778534 AATCTGTTTGGCATGAAGTGAG 57.221 40.909 0.00 0.00 0.00 3.51
7053 8645 8.328758 TCTCTTGTGGAACCAATAGTATTCAAT 58.671 33.333 0.00 0.00 34.36 2.57
7066 8658 9.797473 CAATAGTATTCAATTACACTATGCACG 57.203 33.333 0.00 0.00 35.06 5.34
7067 8659 6.844696 AGTATTCAATTACACTATGCACGG 57.155 37.500 0.00 0.00 0.00 4.94
7098 8690 2.509548 TGTGGTTGGATGATTAGGAGGG 59.490 50.000 0.00 0.00 0.00 4.30
7108 8700 2.026262 TGATTAGGAGGGCAGTGGTTTC 60.026 50.000 0.00 0.00 0.00 2.78
7110 8702 0.474854 TAGGAGGGCAGTGGTTTCCA 60.475 55.000 0.00 0.00 0.00 3.53
7111 8703 1.152830 GGAGGGCAGTGGTTTCCAA 59.847 57.895 0.00 0.00 34.18 3.53
7112 8704 1.179174 GGAGGGCAGTGGTTTCCAAC 61.179 60.000 0.00 0.00 34.18 3.77
7132 8724 2.972713 ACCACTCCTAGCAGAGTTCAAA 59.027 45.455 1.68 0.00 44.83 2.69
7138 8730 5.721960 ACTCCTAGCAGAGTTCAAATCCTAA 59.278 40.000 0.00 0.00 44.83 2.69
7183 8948 7.881775 TTTTCTAGATTTATTCCAGCCCTTC 57.118 36.000 0.00 0.00 0.00 3.46
7186 8951 4.608170 AGATTTATTCCAGCCCTTCCAA 57.392 40.909 0.00 0.00 0.00 3.53
7191 8956 2.148446 TTCCAGCCCTTCCAATGATG 57.852 50.000 0.00 0.00 0.00 3.07
7195 8960 1.033746 AGCCCTTCCAATGATGTGCG 61.034 55.000 0.00 0.00 0.00 5.34
7281 9056 9.612066 TTTTGAGTTGGAATTTCTTTATTTGCT 57.388 25.926 0.00 0.00 0.00 3.91
7282 9057 8.592105 TTGAGTTGGAATTTCTTTATTTGCTG 57.408 30.769 0.00 0.00 0.00 4.41
7371 9152 4.439700 CCCACTTCTGCAAATCATGATGAC 60.440 45.833 9.46 2.47 0.00 3.06
7436 9220 2.441750 TGCCCTCACCTGTCTTAACTTT 59.558 45.455 0.00 0.00 0.00 2.66
7448 9232 5.053811 TGTCTTAACTTTCATCAGACGCAA 58.946 37.500 0.00 0.00 37.31 4.85
7449 9233 5.525745 TGTCTTAACTTTCATCAGACGCAAA 59.474 36.000 0.00 0.00 37.31 3.68
7450 9234 6.074005 GTCTTAACTTTCATCAGACGCAAAG 58.926 40.000 0.00 0.00 32.97 2.77
7451 9235 5.758296 TCTTAACTTTCATCAGACGCAAAGT 59.242 36.000 0.00 0.00 40.10 2.66
7468 9264 5.336990 CGCAAAGTTTAAGAGTGAAATGACG 59.663 40.000 0.00 0.00 0.00 4.35
7573 9369 4.912766 TGACTCAACAAAAACAACGTGTTC 59.087 37.500 0.00 0.00 40.14 3.18
7598 9394 5.080969 TGGATCTAAGTTCCTAACCAACG 57.919 43.478 0.00 0.00 34.17 4.10
7618 9414 6.318628 CAACGGCATACATAAAAACTGCTTA 58.681 36.000 0.00 0.00 33.43 3.09
7619 9415 6.119144 ACGGCATACATAAAAACTGCTTAG 57.881 37.500 0.00 0.00 33.43 2.18
7620 9416 5.646360 ACGGCATACATAAAAACTGCTTAGT 59.354 36.000 0.00 0.00 33.43 2.24
7621 9417 6.819649 ACGGCATACATAAAAACTGCTTAGTA 59.180 34.615 0.00 0.00 33.43 1.82
7622 9418 7.123830 CGGCATACATAAAAACTGCTTAGTAC 58.876 38.462 0.00 0.00 33.43 2.73
7694 9490 5.185056 ACCAAATTTAGATCCCCGAGTTTTG 59.815 40.000 0.00 0.00 0.00 2.44
7695 9491 5.185056 CCAAATTTAGATCCCCGAGTTTTGT 59.815 40.000 0.00 0.00 0.00 2.83
7696 9492 6.322491 CAAATTTAGATCCCCGAGTTTTGTC 58.678 40.000 0.00 0.00 0.00 3.18
7697 9493 4.627284 TTTAGATCCCCGAGTTTTGTCA 57.373 40.909 0.00 0.00 0.00 3.58
7699 9495 2.779506 AGATCCCCGAGTTTTGTCAAC 58.220 47.619 0.00 0.00 0.00 3.18
7701 9497 2.721425 TCCCCGAGTTTTGTCAACTT 57.279 45.000 0.00 0.00 0.00 2.66
7702 9498 2.294074 TCCCCGAGTTTTGTCAACTTG 58.706 47.619 0.00 0.00 0.00 3.16
7706 9502 3.044986 CCGAGTTTTGTCAACTTGCATG 58.955 45.455 0.00 0.00 31.74 4.06
7707 9503 3.044986 CGAGTTTTGTCAACTTGCATGG 58.955 45.455 4.44 0.00 0.00 3.66
7709 9505 2.168106 AGTTTTGTCAACTTGCATGGCA 59.832 40.909 4.44 0.00 36.47 4.92
7710 9506 2.935201 GTTTTGTCAACTTGCATGGCAA 59.065 40.909 1.76 1.76 46.80 4.52
7711 9507 2.222007 TTGTCAACTTGCATGGCAAC 57.778 45.000 1.76 0.00 43.99 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.643820 GGCGGTAATTTCGACGTGAG 59.356 55.000 0.00 0.00 0.00 3.51
1 2 2.740668 GGCGGTAATTTCGACGTGA 58.259 52.632 0.00 0.00 0.00 4.35
16 17 2.742372 CTTGAGGGTGAACCGGCG 60.742 66.667 0.00 0.00 46.96 6.46
17 18 3.056328 GCTTGAGGGTGAACCGGC 61.056 66.667 0.00 0.00 46.96 6.13
18 19 2.742372 CGCTTGAGGGTGAACCGG 60.742 66.667 0.00 0.00 46.96 5.28
25 26 0.180406 AAATATCGCCGCTTGAGGGT 59.820 50.000 0.00 0.00 0.00 4.34
29 30 3.552273 GGACTAGAAATATCGCCGCTTGA 60.552 47.826 0.00 0.00 0.00 3.02
33 34 1.272769 AGGGACTAGAAATATCGCCGC 59.727 52.381 0.00 0.00 36.02 6.53
58 61 3.110178 GCACCTTCGGTCGTTCGG 61.110 66.667 1.08 0.00 31.02 4.30
67 70 5.116180 TCCAATAACATTAGAGCACCTTCG 58.884 41.667 0.00 0.00 0.00 3.79
69 72 6.313519 TCTCCAATAACATTAGAGCACCTT 57.686 37.500 0.00 0.00 0.00 3.50
72 75 7.224753 TCGATTTCTCCAATAACATTAGAGCAC 59.775 37.037 0.00 0.00 0.00 4.40
77 80 6.992715 ACCCTCGATTTCTCCAATAACATTAG 59.007 38.462 0.00 0.00 0.00 1.73
84 87 3.112263 ACCACCCTCGATTTCTCCAATA 58.888 45.455 0.00 0.00 0.00 1.90
92 95 2.746277 GCGCACCACCCTCGATTT 60.746 61.111 0.30 0.00 0.00 2.17
96 99 4.457496 ATCTGCGCACCACCCTCG 62.457 66.667 5.66 0.00 0.00 4.63
100 103 2.821366 CCAGATCTGCGCACCACC 60.821 66.667 17.76 0.00 0.00 4.61
101 104 3.503363 GCCAGATCTGCGCACCAC 61.503 66.667 23.33 0.00 0.00 4.16
125 128 0.663269 GCTAAAGCAAACCGCACCAC 60.663 55.000 0.00 0.00 46.13 4.16
223 233 3.168292 CAAGATGCCCCTTTTCCTTTCT 58.832 45.455 0.00 0.00 0.00 2.52
497 516 3.793144 CTCCGACGCAAAGGCAGC 61.793 66.667 0.00 0.00 41.24 5.25
498 517 1.021390 AATCTCCGACGCAAAGGCAG 61.021 55.000 0.00 0.00 41.24 4.85
499 518 1.003839 AATCTCCGACGCAAAGGCA 60.004 52.632 0.00 0.00 41.24 4.75
680 699 5.533154 CCAAGGGAGATGAGTAGTACTAGTG 59.467 48.000 15.07 0.00 0.00 2.74
739 760 4.496507 GGGATTAGCGAAGTCAAATGAAGC 60.497 45.833 0.00 0.00 0.00 3.86
886 1273 1.629013 TCGCACATGTTCATCGTCTC 58.371 50.000 0.00 0.00 0.00 3.36
890 1277 0.652465 CGCATCGCACATGTTCATCG 60.652 55.000 0.00 0.00 0.00 3.84
940 1327 0.035820 TCCACCGTAAATCAGGCACC 60.036 55.000 0.00 0.00 0.00 5.01
1048 1435 0.653114 GAAGAAGGCGGCGAATCTTC 59.347 55.000 26.50 26.50 40.50 2.87
1095 1482 4.003648 GTCTGAAACAAATCACCGAGGAT 58.996 43.478 0.00 0.00 0.00 3.24
1226 1613 6.633856 ACTGATTAGTGGGCATTTGAAAATC 58.366 36.000 0.00 0.00 35.34 2.17
1227 1614 6.610075 ACTGATTAGTGGGCATTTGAAAAT 57.390 33.333 0.00 0.00 35.34 1.82
1228 1615 6.418057 AACTGATTAGTGGGCATTTGAAAA 57.582 33.333 0.00 0.00 37.19 2.29
1229 1616 5.335583 CGAACTGATTAGTGGGCATTTGAAA 60.336 40.000 0.00 0.00 37.19 2.69
1230 1617 4.155826 CGAACTGATTAGTGGGCATTTGAA 59.844 41.667 0.00 0.00 37.19 2.69
1231 1618 3.689161 CGAACTGATTAGTGGGCATTTGA 59.311 43.478 0.00 0.00 37.19 2.69
1232 1619 3.440173 ACGAACTGATTAGTGGGCATTTG 59.560 43.478 0.00 0.00 37.19 2.32
1258 1645 2.498167 AGCACAAACAGCTAGACCAAG 58.502 47.619 0.00 0.00 41.32 3.61
1310 1697 4.942852 AGAGTCAAATTAGGCAGAGATCG 58.057 43.478 0.00 0.00 0.00 3.69
1321 1708 4.708177 GCAGAGGCCATAGAGTCAAATTA 58.292 43.478 5.01 0.00 0.00 1.40
1412 1818 1.196127 CTCCCTTTTTCGTACCGCAAC 59.804 52.381 0.00 0.00 0.00 4.17
1417 1823 1.022982 CCCGCTCCCTTTTTCGTACC 61.023 60.000 0.00 0.00 0.00 3.34
1426 1832 2.911552 TTATTTTTCCCCGCTCCCTT 57.088 45.000 0.00 0.00 0.00 3.95
1539 1993 9.634163 AATAAAAAGATACATGGGAAAAACGTC 57.366 29.630 0.00 0.00 0.00 4.34
1613 2067 8.763601 AGCAGTAGAATAGTAAAAGGAAGATGT 58.236 33.333 0.00 0.00 0.00 3.06
1627 2081 7.661968 TCACAGCCTTAATAGCAGTAGAATAG 58.338 38.462 0.99 0.00 0.00 1.73
1645 2099 2.175878 AGTCAGTCAACATCACAGCC 57.824 50.000 0.00 0.00 0.00 4.85
1905 2359 7.486551 GTGTTCAGTGTAGAGAGATGATACAAC 59.513 40.741 0.00 0.00 31.61 3.32
1907 2361 6.095580 GGTGTTCAGTGTAGAGAGATGATACA 59.904 42.308 0.00 0.00 0.00 2.29
2079 2551 6.710295 ACAGTAATTGCTGACAAAGTACATCA 59.290 34.615 27.53 0.00 39.77 3.07
2323 2882 4.254709 ACCAGCGTGCAGGCTTGA 62.255 61.111 31.72 0.00 42.53 3.02
2421 2980 5.928839 CCTAATTCTGTGATAATCCTGACCG 59.071 44.000 0.00 0.00 0.00 4.79
2434 2993 6.707608 TGCTCTAACATATGCCTAATTCTGTG 59.292 38.462 1.58 0.00 0.00 3.66
2499 3058 6.893020 AGGACCAATTATCCTTGACTAGTT 57.107 37.500 0.00 0.00 44.64 2.24
2534 3093 3.055094 GGAGGGCACTAAGATCTTGTTCA 60.055 47.826 18.47 0.00 0.00 3.18
2598 3157 8.579006 AGTTTGAATGTTTGATGCAATTCTAGA 58.421 29.630 7.78 0.00 0.00 2.43
2654 3338 7.886629 AACGTAGGTACTATCATAAGTTGGA 57.113 36.000 0.00 0.00 45.60 3.53
2662 3346 6.039047 CCACACACTAACGTAGGTACTATCAT 59.961 42.308 0.00 0.00 45.60 2.45
2682 3366 5.734855 ATACAAGATTACGCATTCCACAC 57.265 39.130 0.00 0.00 0.00 3.82
2705 3389 9.793252 CATAATACATGCAAGCTAAAAGAAAGT 57.207 29.630 0.00 0.00 0.00 2.66
2807 3491 8.556213 ACGCAACAATAAGAACCTATAGAAAA 57.444 30.769 0.00 0.00 0.00 2.29
2811 3495 7.534085 TCAACGCAACAATAAGAACCTATAG 57.466 36.000 0.00 0.00 0.00 1.31
2984 3672 2.158885 GGTATCTGAAGTGGGAGGAAGC 60.159 54.545 0.00 0.00 0.00 3.86
3019 3707 7.208064 AGCTGATAGGAAGGGTAAATGTTAA 57.792 36.000 0.00 0.00 0.00 2.01
3198 3886 6.543100 AGACGTTTGGGTAGTAACATGAAAAA 59.457 34.615 0.00 0.00 0.00 1.94
3242 3930 1.535462 CTGCCACAAAGGGTTAACTCG 59.465 52.381 5.42 0.00 38.09 4.18
3362 4050 1.813513 ACATGTGCCTACAAGTCTGC 58.186 50.000 0.00 0.00 40.84 4.26
3444 4135 4.529769 TGAGTATGGAGATCATGCCTAAGG 59.470 45.833 0.00 0.00 38.95 2.69
3571 4263 2.044946 GACCGGGGCTTGCTCATT 60.045 61.111 6.32 0.00 0.00 2.57
3892 4585 4.081697 GGGGTTAATCACAATGAACAAGGG 60.082 45.833 0.00 0.00 28.76 3.95
4014 4707 5.276270 CGAAGCCAATTGATGTTTATCAGG 58.724 41.667 7.12 0.00 43.76 3.86
4067 4760 1.134965 TGTGAAAAAGCCAACAACCCG 60.135 47.619 0.00 0.00 0.00 5.28
4095 4788 8.417106 TGGCAAAATTTTAGTGTGATTAGACAA 58.583 29.630 2.44 0.00 0.00 3.18
4097 4790 8.986477 ATGGCAAAATTTTAGTGTGATTAGAC 57.014 30.769 2.44 0.00 0.00 2.59
4099 4792 8.863049 GTGATGGCAAAATTTTAGTGTGATTAG 58.137 33.333 2.44 0.00 0.00 1.73
4100 4793 8.363390 TGTGATGGCAAAATTTTAGTGTGATTA 58.637 29.630 2.44 0.00 0.00 1.75
4101 4794 7.171337 GTGTGATGGCAAAATTTTAGTGTGATT 59.829 33.333 2.44 0.00 0.00 2.57
4102 4795 6.646240 GTGTGATGGCAAAATTTTAGTGTGAT 59.354 34.615 2.44 0.00 0.00 3.06
4104 4797 5.984926 AGTGTGATGGCAAAATTTTAGTGTG 59.015 36.000 2.44 0.00 0.00 3.82
4105 4798 6.160576 AGTGTGATGGCAAAATTTTAGTGT 57.839 33.333 2.44 0.00 0.00 3.55
4106 4799 8.586570 TTTAGTGTGATGGCAAAATTTTAGTG 57.413 30.769 2.44 0.00 0.00 2.74
4107 4800 9.777297 ATTTTAGTGTGATGGCAAAATTTTAGT 57.223 25.926 2.44 0.00 0.00 2.24
4110 4803 8.901793 ACAATTTTAGTGTGATGGCAAAATTTT 58.098 25.926 0.00 0.00 36.93 1.82
4116 4809 4.586421 TGGACAATTTTAGTGTGATGGCAA 59.414 37.500 0.00 0.00 0.00 4.52
4300 4993 3.371063 GAGGACCGACTGCCGACA 61.371 66.667 0.00 0.00 41.76 4.35
4313 5006 0.491823 TTGAGTCCTTCCCCTGAGGA 59.508 55.000 0.00 0.00 45.68 3.71
4430 5127 2.368878 AATCAGCCTCCCCTCCCC 60.369 66.667 0.00 0.00 0.00 4.81
4440 5137 1.099879 AGGATTCTGCGCAATCAGCC 61.100 55.000 20.53 15.00 41.38 4.85
4450 5147 3.070734 TGGAGATGCTCTTAGGATTCTGC 59.929 47.826 0.00 0.00 0.00 4.26
4452 5149 4.102367 GGTTGGAGATGCTCTTAGGATTCT 59.898 45.833 0.00 0.00 0.00 2.40
4482 5691 4.072131 CGGACATATAGGGACAAAATGGG 58.928 47.826 0.00 0.00 0.00 4.00
4505 5714 2.362369 CCTGTCTGGGCTGTCCGAT 61.362 63.158 0.00 0.00 38.76 4.18
4564 5773 0.398522 AGCCCGGACATATGAGGACA 60.399 55.000 10.38 0.00 0.00 4.02
4586 5795 1.476833 GCTGAGGTTGAGGGTTCACAA 60.477 52.381 0.00 0.00 31.71 3.33
4589 5798 1.761174 GGCTGAGGTTGAGGGTTCA 59.239 57.895 0.00 0.00 0.00 3.18
4608 5817 3.055819 CCCTCGTATCCTCCCAATACATG 60.056 52.174 0.00 0.00 31.30 3.21
4609 5818 3.173965 CCCTCGTATCCTCCCAATACAT 58.826 50.000 0.00 0.00 31.30 2.29
4610 5819 2.090943 ACCCTCGTATCCTCCCAATACA 60.091 50.000 0.00 0.00 31.30 2.29
4611 5820 2.299297 CACCCTCGTATCCTCCCAATAC 59.701 54.545 0.00 0.00 0.00 1.89
4612 5821 2.090943 ACACCCTCGTATCCTCCCAATA 60.091 50.000 0.00 0.00 0.00 1.90
4613 5822 1.344087 ACACCCTCGTATCCTCCCAAT 60.344 52.381 0.00 0.00 0.00 3.16
4614 5823 0.042131 ACACCCTCGTATCCTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
4615 5824 0.396695 GACACCCTCGTATCCTCCCA 60.397 60.000 0.00 0.00 0.00 4.37
4616 5825 1.114119 GGACACCCTCGTATCCTCCC 61.114 65.000 0.00 0.00 0.00 4.30
4617 5826 1.453762 CGGACACCCTCGTATCCTCC 61.454 65.000 0.00 0.00 0.00 4.30
4618 5827 1.453762 CCGGACACCCTCGTATCCTC 61.454 65.000 0.00 0.00 0.00 3.71
4619 5828 1.455217 CCGGACACCCTCGTATCCT 60.455 63.158 0.00 0.00 0.00 3.24
4620 5829 2.496291 CCCGGACACCCTCGTATCC 61.496 68.421 0.73 0.00 0.00 2.59
4621 5830 1.755783 ACCCGGACACCCTCGTATC 60.756 63.158 0.73 0.00 0.00 2.24
4622 5831 2.056223 CACCCGGACACCCTCGTAT 61.056 63.158 0.73 0.00 0.00 3.06
4625 5834 4.373116 CACACCCGGACACCCTCG 62.373 72.222 0.73 0.00 0.00 4.63
4639 5848 2.280797 GCGGACTGCTTGGACACA 60.281 61.111 0.00 0.00 41.73 3.72
4646 5855 2.434884 CGATGTGGCGGACTGCTT 60.435 61.111 6.16 0.00 45.43 3.91
4657 5866 4.386951 TGGGCCGTGTCCGATGTG 62.387 66.667 0.00 0.00 35.63 3.21
4658 5867 4.388499 GTGGGCCGTGTCCGATGT 62.388 66.667 0.00 0.00 35.63 3.06
4707 5916 1.270839 CCAGACACAACGGACAGGAAT 60.271 52.381 0.00 0.00 0.00 3.01
4723 5932 1.860240 AGATCCTAGGTGGTAGCCAGA 59.140 52.381 9.08 0.00 32.34 3.86
4780 5989 3.809832 GCGCATAAGTGAGGATAATGTGT 59.190 43.478 0.30 0.00 0.00 3.72
4784 5993 3.181455 TGGTGCGCATAAGTGAGGATAAT 60.181 43.478 15.91 0.00 0.00 1.28
4787 5996 0.541392 TGGTGCGCATAAGTGAGGAT 59.459 50.000 15.91 0.00 0.00 3.24
4882 6091 0.914417 TCTTTTCCGGGAGCCCATCT 60.914 55.000 0.00 0.00 35.37 2.90
4993 6204 1.135960 GGGGATGGAGAGAGAAAGGG 58.864 60.000 0.00 0.00 0.00 3.95
5058 6270 1.671054 CCCTCAATTGTCCGCACGT 60.671 57.895 5.13 0.00 0.00 4.49
5061 6273 0.109532 TGAACCCTCAATTGTCCGCA 59.890 50.000 5.13 0.00 0.00 5.69
5093 6305 2.127232 GTTCAAAGCAGGCGCGTC 60.127 61.111 0.21 0.21 45.49 5.19
5094 6306 3.660111 GGTTCAAAGCAGGCGCGT 61.660 61.111 8.43 0.00 45.49 6.01
5095 6307 4.404654 GGGTTCAAAGCAGGCGCG 62.405 66.667 0.00 0.00 45.49 6.86
5097 6309 1.172180 TTGAGGGTTCAAAGCAGGCG 61.172 55.000 0.00 0.00 40.26 5.52
5099 6311 2.629617 ACAATTGAGGGTTCAAAGCAGG 59.370 45.455 13.59 0.00 45.82 4.85
5100 6312 3.305608 GGACAATTGAGGGTTCAAAGCAG 60.306 47.826 13.59 0.00 45.82 4.24
5101 6313 2.627699 GGACAATTGAGGGTTCAAAGCA 59.372 45.455 13.59 0.00 45.82 3.91
5102 6314 2.351738 CGGACAATTGAGGGTTCAAAGC 60.352 50.000 13.59 0.00 45.82 3.51
5103 6315 2.351738 GCGGACAATTGAGGGTTCAAAG 60.352 50.000 13.59 0.00 45.82 2.77
5104 6316 1.611491 GCGGACAATTGAGGGTTCAAA 59.389 47.619 13.59 0.00 45.82 2.69
5105 6317 1.243902 GCGGACAATTGAGGGTTCAA 58.756 50.000 13.59 0.00 46.67 2.69
5106 6318 0.608035 GGCGGACAATTGAGGGTTCA 60.608 55.000 13.59 0.00 0.00 3.18
5107 6319 1.313091 GGGCGGACAATTGAGGGTTC 61.313 60.000 13.59 0.00 0.00 3.62
5108 6320 1.304134 GGGCGGACAATTGAGGGTT 60.304 57.895 13.59 0.00 0.00 4.11
5109 6321 2.355115 GGGCGGACAATTGAGGGT 59.645 61.111 13.59 0.00 0.00 4.34
5110 6322 2.824041 CGGGCGGACAATTGAGGG 60.824 66.667 13.59 1.26 0.00 4.30
5111 6323 3.508840 GCGGGCGGACAATTGAGG 61.509 66.667 13.59 1.63 0.00 3.86
5112 6324 3.864686 CGCGGGCGGACAATTGAG 61.865 66.667 13.59 4.27 35.56 3.02
5128 6340 4.803426 GAGAGGGACACGGCTGCG 62.803 72.222 0.00 0.00 0.00 5.18
5129 6341 2.527951 ATTGAGAGGGACACGGCTGC 62.528 60.000 0.00 0.00 0.00 5.25
5130 6342 0.036010 AATTGAGAGGGACACGGCTG 60.036 55.000 0.00 0.00 0.00 4.85
5131 6343 0.036010 CAATTGAGAGGGACACGGCT 60.036 55.000 0.00 0.00 0.00 5.52
5132 6344 0.321653 ACAATTGAGAGGGACACGGC 60.322 55.000 13.59 0.00 0.00 5.68
5133 6345 1.676014 GGACAATTGAGAGGGACACGG 60.676 57.143 13.59 0.00 0.00 4.94
5134 6346 1.726853 GGACAATTGAGAGGGACACG 58.273 55.000 13.59 0.00 0.00 4.49
5135 6347 1.726853 CGGACAATTGAGAGGGACAC 58.273 55.000 13.59 0.00 0.00 3.67
5136 6348 0.036388 GCGGACAATTGAGAGGGACA 60.036 55.000 13.59 0.00 0.00 4.02
5137 6349 0.744771 GGCGGACAATTGAGAGGGAC 60.745 60.000 13.59 0.00 0.00 4.46
5138 6350 1.602237 GGCGGACAATTGAGAGGGA 59.398 57.895 13.59 0.00 0.00 4.20
5139 6351 1.452108 GGGCGGACAATTGAGAGGG 60.452 63.158 13.59 0.00 0.00 4.30
5140 6352 1.815421 CGGGCGGACAATTGAGAGG 60.815 63.158 13.59 0.00 0.00 3.69
5141 6353 2.464459 GCGGGCGGACAATTGAGAG 61.464 63.158 13.59 3.54 0.00 3.20
5142 6354 2.435938 GCGGGCGGACAATTGAGA 60.436 61.111 13.59 0.00 0.00 3.27
5143 6355 3.864686 CGCGGGCGGACAATTGAG 61.865 66.667 13.59 4.27 35.56 3.02
5159 6371 4.680237 TTGAGGGACACGGCTGCG 62.680 66.667 0.00 0.00 0.00 5.18
5160 6372 2.281484 TTTGAGGGACACGGCTGC 60.281 61.111 0.00 0.00 0.00 5.25
5161 6373 2.317609 CGTTTGAGGGACACGGCTG 61.318 63.158 0.00 0.00 0.00 4.85
5162 6374 2.030562 CGTTTGAGGGACACGGCT 59.969 61.111 0.00 0.00 0.00 5.52
5163 6375 3.047877 CCGTTTGAGGGACACGGC 61.048 66.667 0.00 0.00 37.16 5.68
5171 6383 1.135112 GCTAATTTGGCCCGTTTGAGG 60.135 52.381 0.00 0.00 0.00 3.86
5172 6384 1.135112 GGCTAATTTGGCCCGTTTGAG 60.135 52.381 12.50 0.00 43.49 3.02
5173 6385 0.892063 GGCTAATTTGGCCCGTTTGA 59.108 50.000 12.50 0.00 43.49 2.69
5174 6386 3.434258 GGCTAATTTGGCCCGTTTG 57.566 52.632 12.50 0.00 43.49 2.93
5235 6447 8.779354 ACAGAGCCTAGTTATTTAAGAAGTTG 57.221 34.615 0.00 0.00 0.00 3.16
5276 6500 1.203441 TGGGTGGCAAGAGAGATGCT 61.203 55.000 0.00 0.00 43.34 3.79
5291 6705 0.549950 CATGCTCCAGAAGGATGGGT 59.450 55.000 0.00 0.00 46.88 4.51
5406 6849 2.287608 GGCAGTGTTTAGTCAAGTTGGC 60.288 50.000 0.00 0.00 0.00 4.52
5493 6936 5.483937 ACAGTCCTGACTATACAACCAATCA 59.516 40.000 0.40 0.00 40.20 2.57
5615 7058 2.298729 GGGTCTGCTAGGATGCTCTAAG 59.701 54.545 0.00 0.00 0.00 2.18
5734 7180 1.268625 GTTCACGGGGCCTGTAAAAAG 59.731 52.381 19.67 5.47 0.00 2.27
5967 7473 1.604023 CGGACGGGGAGCTAGCTAT 60.604 63.158 19.38 0.00 0.00 2.97
6133 7688 3.753434 CTCCTCGTGCTCGCCACT 61.753 66.667 2.69 0.00 42.42 4.00
6206 7761 0.250234 CCATCTTCTTCCTCACGCCA 59.750 55.000 0.00 0.00 0.00 5.69
6231 7786 7.845066 ACCCGTGAAAAAGAATATTCTCTAC 57.155 36.000 18.19 11.40 36.28 2.59
6249 7804 2.607631 ACCCGTATAATCAACCCGTG 57.392 50.000 0.00 0.00 0.00 4.94
6393 7948 3.058224 GCTCATGGTACCACAAAAGACAC 60.058 47.826 19.09 0.00 0.00 3.67
6423 7990 5.389859 TGGTGCCTTTATGAAATGTTCTG 57.610 39.130 0.00 0.00 0.00 3.02
6444 8012 6.233434 TGGGCTAAGCAGATGAATACTAATG 58.767 40.000 0.00 0.00 0.00 1.90
6485 8053 7.209475 TGCAAATTCCTCTTTTGTCCTTAAAG 58.791 34.615 0.00 0.00 36.63 1.85
6495 8063 9.374838 GTGAAATATCATGCAAATTCCTCTTTT 57.625 29.630 0.00 0.00 38.01 2.27
6496 8064 7.983484 GGTGAAATATCATGCAAATTCCTCTTT 59.017 33.333 0.00 0.00 38.01 2.52
6569 8139 8.051535 AGTGAGATATGAATTCACCAAGACAAT 58.948 33.333 11.07 4.18 41.58 2.71
6823 8393 8.552296 AGATATCTCTTGGGTTAACTGTGAAAT 58.448 33.333 5.42 0.00 0.00 2.17
7014 8587 7.414540 GGTTCCACAAGAGATGAATTACACATC 60.415 40.741 0.00 0.00 42.81 3.06
7053 8645 1.624312 TGGTTCCCGTGCATAGTGTAA 59.376 47.619 0.00 0.00 0.00 2.41
7108 8700 1.270907 ACTCTGCTAGGAGTGGTTGG 58.729 55.000 16.35 3.00 43.89 3.77
7110 8702 2.609747 TGAACTCTGCTAGGAGTGGTT 58.390 47.619 18.68 18.68 44.67 3.67
7111 8703 2.310779 TGAACTCTGCTAGGAGTGGT 57.689 50.000 16.35 10.70 44.67 4.16
7112 8704 3.685139 TTTGAACTCTGCTAGGAGTGG 57.315 47.619 16.35 10.76 44.67 4.00
7113 8705 4.081198 AGGATTTGAACTCTGCTAGGAGTG 60.081 45.833 11.39 11.34 44.67 3.51
7115 8707 4.751767 AGGATTTGAACTCTGCTAGGAG 57.248 45.455 4.60 4.60 39.09 3.69
7117 8709 6.410540 AGTTTAGGATTTGAACTCTGCTAGG 58.589 40.000 0.00 0.00 0.00 3.02
7118 8710 7.625185 GCAAGTTTAGGATTTGAACTCTGCTAG 60.625 40.741 0.00 0.00 36.14 3.42
7119 8711 6.149474 GCAAGTTTAGGATTTGAACTCTGCTA 59.851 38.462 0.00 0.00 36.14 3.49
7120 8712 5.048434 GCAAGTTTAGGATTTGAACTCTGCT 60.048 40.000 0.00 0.00 36.14 4.24
7121 8713 5.157067 GCAAGTTTAGGATTTGAACTCTGC 58.843 41.667 0.00 0.00 32.79 4.26
7165 8757 4.608170 TTGGAAGGGCTGGAATAAATCT 57.392 40.909 0.00 0.00 0.00 2.40
7178 8943 1.133025 GAACGCACATCATTGGAAGGG 59.867 52.381 0.00 0.00 0.00 3.95
7183 8948 1.135603 CCACTGAACGCACATCATTGG 60.136 52.381 5.69 5.69 40.03 3.16
7186 8951 0.324614 TCCCACTGAACGCACATCAT 59.675 50.000 0.00 0.00 0.00 2.45
7191 8956 1.374758 CTCCTCCCACTGAACGCAC 60.375 63.158 0.00 0.00 0.00 5.34
7195 8960 0.680061 AACGTCTCCTCCCACTGAAC 59.320 55.000 0.00 0.00 0.00 3.18
7275 9050 8.421002 ACTTTGGTTGTCTAATTTACAGCAAAT 58.579 29.630 8.86 0.00 38.54 2.32
7276 9051 7.704472 CACTTTGGTTGTCTAATTTACAGCAAA 59.296 33.333 8.86 11.46 32.41 3.68
7279 9054 6.856426 GTCACTTTGGTTGTCTAATTTACAGC 59.144 38.462 0.00 0.00 0.00 4.40
7280 9055 8.070171 CAGTCACTTTGGTTGTCTAATTTACAG 58.930 37.037 0.00 0.00 0.00 2.74
7281 9056 7.468084 GCAGTCACTTTGGTTGTCTAATTTACA 60.468 37.037 0.00 0.00 0.00 2.41
7282 9057 6.856426 GCAGTCACTTTGGTTGTCTAATTTAC 59.144 38.462 0.00 0.00 0.00 2.01
7436 9220 5.177511 CACTCTTAAACTTTGCGTCTGATGA 59.822 40.000 0.00 0.00 0.00 2.92
7448 9232 8.076178 CCAATTCGTCATTTCACTCTTAAACTT 58.924 33.333 0.00 0.00 0.00 2.66
7449 9233 7.584987 CCAATTCGTCATTTCACTCTTAAACT 58.415 34.615 0.00 0.00 0.00 2.66
7450 9234 6.305638 GCCAATTCGTCATTTCACTCTTAAAC 59.694 38.462 0.00 0.00 0.00 2.01
7451 9235 6.016693 TGCCAATTCGTCATTTCACTCTTAAA 60.017 34.615 0.00 0.00 0.00 1.52
7468 9264 4.637534 TCTCTTATTGCTCTGTGCCAATTC 59.362 41.667 0.00 0.00 42.00 2.17
7573 9369 4.037927 TGGTTAGGAACTTAGATCCAGGG 58.962 47.826 11.11 0.00 41.75 4.45
7598 9394 7.908601 GTGTACTAAGCAGTTTTTATGTATGCC 59.091 37.037 0.00 0.00 37.61 4.40
7618 9414 8.980596 ACTGAGACTAGTAGTATGTAGTGTACT 58.019 37.037 1.27 0.00 36.44 2.73
7619 9415 9.033481 CACTGAGACTAGTAGTATGTAGTGTAC 57.967 40.741 20.44 0.00 31.83 2.90
7620 9416 7.710044 GCACTGAGACTAGTAGTATGTAGTGTA 59.290 40.741 24.94 2.50 35.47 2.90
7621 9417 6.539464 GCACTGAGACTAGTAGTATGTAGTGT 59.461 42.308 24.94 10.23 35.47 3.55
7622 9418 6.539103 TGCACTGAGACTAGTAGTATGTAGTG 59.461 42.308 22.55 22.55 35.81 2.74
7701 9497 1.753930 CTATCAGGTGTTGCCATGCA 58.246 50.000 0.00 0.00 40.61 3.96
7702 9498 0.383231 GCTATCAGGTGTTGCCATGC 59.617 55.000 0.00 0.00 40.61 4.06
7706 9502 1.661341 CTCAGCTATCAGGTGTTGCC 58.339 55.000 5.38 0.00 43.70 4.52
7707 9503 1.661341 CCTCAGCTATCAGGTGTTGC 58.339 55.000 5.38 0.00 43.70 4.17
7709 9505 1.279496 TGCCTCAGCTATCAGGTGTT 58.721 50.000 5.38 0.00 43.70 3.32
7710 9506 1.279496 TTGCCTCAGCTATCAGGTGT 58.721 50.000 5.38 0.00 43.70 4.16
7711 9507 2.408271 TTTGCCTCAGCTATCAGGTG 57.592 50.000 7.25 0.00 44.57 4.00
7713 9509 2.621998 CCAATTTGCCTCAGCTATCAGG 59.378 50.000 1.78 1.78 40.80 3.86
7714 9510 3.285484 ACCAATTTGCCTCAGCTATCAG 58.715 45.455 0.00 0.00 40.80 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.