Multiple sequence alignment - TraesCS3D01G222400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G222400 chr3D 100.000 5017 0 0 1 5017 303467166 303462150 0.000000e+00 9265.0
1 TraesCS3D01G222400 chr3D 93.348 932 29 17 2080 2988 135370765 135371686 0.000000e+00 1347.0
2 TraesCS3D01G222400 chr3D 90.605 958 67 20 2208 3152 91033466 91034413 0.000000e+00 1249.0
3 TraesCS3D01G222400 chr3D 93.469 689 25 13 2208 2876 28503058 28503746 0.000000e+00 1005.0
4 TraesCS3D01G222400 chr3D 95.427 328 14 1 4244 4571 303434081 303433755 5.760000e-144 521.0
5 TraesCS3D01G222400 chr3D 90.303 165 9 6 2091 2252 28502907 28503067 5.090000e-50 209.0
6 TraesCS3D01G222400 chr3D 90.123 162 10 5 2093 2252 610789628 610789785 6.580000e-49 206.0
7 TraesCS3D01G222400 chr3D 87.324 71 4 2 4177 4244 328954771 328954703 5.390000e-10 76.8
8 TraesCS3D01G222400 chr3A 95.975 1441 51 3 600 2035 431071185 431072623 0.000000e+00 2333.0
9 TraesCS3D01G222400 chr3A 95.676 925 39 1 3257 4181 431073789 431074712 0.000000e+00 1485.0
10 TraesCS3D01G222400 chr3A 89.402 368 39 0 1 368 431070038 431070405 9.840000e-127 464.0
11 TraesCS3D01G222400 chr3A 88.649 185 15 2 3408 3592 668638227 668638405 2.350000e-53 220.0
12 TraesCS3D01G222400 chr3A 86.170 188 20 2 3408 3595 718742105 718741924 1.100000e-46 198.0
13 TraesCS3D01G222400 chr3A 98.305 59 1 0 2034 2092 431072590 431072648 2.470000e-18 104.0
14 TraesCS3D01G222400 chr3B 94.087 1336 46 11 701 2035 417957119 417958422 0.000000e+00 1999.0
15 TraesCS3D01G222400 chr3B 94.641 1045 36 9 3152 4181 417958446 417959485 0.000000e+00 1602.0
16 TraesCS3D01G222400 chr3B 87.654 162 14 5 2093 2252 20477499 20477656 3.080000e-42 183.0
17 TraesCS3D01G222400 chr3B 83.422 187 28 2 2 187 225829585 225829401 2.400000e-38 171.0
18 TraesCS3D01G222400 chr3B 96.825 63 2 0 2034 2096 417958389 417958451 6.870000e-19 106.0
19 TraesCS3D01G222400 chr5D 95.124 964 27 10 2208 3153 306570463 306571424 0.000000e+00 1502.0
20 TraesCS3D01G222400 chr5D 88.899 1081 79 28 2090 3151 58285580 58286638 0.000000e+00 1293.0
21 TraesCS3D01G222400 chr5D 90.204 980 56 19 2208 3151 549588509 549587534 0.000000e+00 1242.0
22 TraesCS3D01G222400 chr5D 83.014 783 109 17 4244 5017 175290446 175289679 0.000000e+00 688.0
23 TraesCS3D01G222400 chr5D 90.625 160 14 1 387 546 101660609 101660767 1.420000e-50 211.0
24 TraesCS3D01G222400 chr5D 85.556 180 20 4 8 185 364235920 364236095 3.080000e-42 183.0
25 TraesCS3D01G222400 chr5D 76.168 214 51 0 1605 1818 510058795 510059008 4.110000e-21 113.0
26 TraesCS3D01G222400 chr5D 93.750 64 3 1 4177 4240 444850263 444850325 1.490000e-15 95.3
27 TraesCS3D01G222400 chr6D 94.896 960 31 8 2208 3149 400782535 400783494 0.000000e+00 1485.0
28 TraesCS3D01G222400 chr6D 90.991 1110 35 33 2093 3149 463712252 463711155 0.000000e+00 1435.0
29 TraesCS3D01G222400 chr6D 92.705 987 29 11 2208 3151 35880121 35879135 0.000000e+00 1384.0
30 TraesCS3D01G222400 chr6D 94.203 690 19 10 2208 2876 450000738 450000049 0.000000e+00 1033.0
31 TraesCS3D01G222400 chr6D 91.411 163 7 6 2093 2252 106950242 106950400 3.040000e-52 217.0
32 TraesCS3D01G222400 chr6D 87.363 182 23 0 187 368 106077634 106077815 5.090000e-50 209.0
33 TraesCS3D01G222400 chr6D 87.363 182 23 0 187 368 467150109 467149928 5.090000e-50 209.0
34 TraesCS3D01G222400 chr6D 84.615 182 25 2 8 188 23829009 23829188 1.440000e-40 178.0
35 TraesCS3D01G222400 chr1D 93.149 978 34 10 2208 3152 29835106 29834129 0.000000e+00 1404.0
36 TraesCS3D01G222400 chr1D 90.339 973 20 10 2090 3011 323868929 323869878 0.000000e+00 1208.0
37 TraesCS3D01G222400 chr1D 83.715 786 98 20 4244 5017 474928033 474928800 0.000000e+00 715.0
38 TraesCS3D01G222400 chr1D 81.586 782 122 17 4244 5017 30201510 30200743 1.190000e-175 627.0
39 TraesCS3D01G222400 chr1D 82.609 322 39 12 4243 4556 30187735 30187423 8.280000e-68 268.0
40 TraesCS3D01G222400 chr1D 92.537 67 4 1 4177 4243 379591613 379591548 1.490000e-15 95.3
41 TraesCS3D01G222400 chr2D 95.751 659 24 3 2497 3153 637671653 637670997 0.000000e+00 1059.0
42 TraesCS3D01G222400 chr2D 94.058 690 20 12 2208 2876 6215625 6216314 0.000000e+00 1027.0
43 TraesCS3D01G222400 chr2D 84.644 267 6 2 2093 2324 635163208 635162942 3.020000e-57 233.0
44 TraesCS3D01G222400 chr2D 89.655 174 17 1 187 360 603661078 603660906 2.350000e-53 220.0
45 TraesCS3D01G222400 chr2D 90.968 155 14 0 387 541 126046617 126046771 5.090000e-50 209.0
46 TraesCS3D01G222400 chr2D 90.184 163 9 6 2093 2252 6215476 6215634 6.580000e-49 206.0
47 TraesCS3D01G222400 chr2D 84.409 186 26 2 3 187 378729222 378729405 3.990000e-41 180.0
48 TraesCS3D01G222400 chr2D 78.199 211 44 2 1613 1822 196130844 196130635 3.150000e-27 134.0
49 TraesCS3D01G222400 chr2D 83.333 102 17 0 1695 1796 196224306 196224205 1.490000e-15 95.3
50 TraesCS3D01G222400 chr4D 94.712 643 17 7 2208 2833 463692169 463691527 0.000000e+00 983.0
51 TraesCS3D01G222400 chr4D 85.641 780 88 18 4244 5015 326376902 326376139 0.000000e+00 798.0
52 TraesCS3D01G222400 chr4D 92.537 67 3 2 4177 4243 352524380 352524316 1.490000e-15 95.3
53 TraesCS3D01G222400 chr4A 85.641 780 92 14 4244 5017 43224825 43224060 0.000000e+00 802.0
54 TraesCS3D01G222400 chr4A 93.373 332 22 0 4244 4575 634747338 634747007 4.510000e-135 492.0
55 TraesCS3D01G222400 chr4A 87.912 182 22 0 187 368 598589219 598589038 1.090000e-51 215.0
56 TraesCS3D01G222400 chr4A 87.363 182 23 0 187 368 542491215 542491034 5.090000e-50 209.0
57 TraesCS3D01G222400 chr4A 84.659 176 22 4 14 187 259780237 259780065 2.400000e-38 171.0
58 TraesCS3D01G222400 chr4A 83.069 189 29 2 2 189 742425475 742425661 8.640000e-38 169.0
59 TraesCS3D01G222400 chr4A 91.045 67 5 1 4177 4243 595647166 595647231 6.920000e-14 89.8
60 TraesCS3D01G222400 chr4B 84.217 792 99 17 4243 5017 605790127 605790909 0.000000e+00 747.0
61 TraesCS3D01G222400 chr4B 88.333 180 21 0 189 368 640239117 640238938 3.040000e-52 217.0
62 TraesCS3D01G222400 chr7B 81.542 791 104 30 4244 5017 522731728 522732493 9.230000e-172 614.0
63 TraesCS3D01G222400 chr7B 91.045 67 5 1 4177 4243 469479580 469479515 6.920000e-14 89.8
64 TraesCS3D01G222400 chr7B 90.323 62 5 1 4182 4243 14218358 14218418 4.160000e-11 80.5
65 TraesCS3D01G222400 chr7B 92.727 55 3 1 4189 4243 650620161 650620108 1.500000e-10 78.7
66 TraesCS3D01G222400 chr6A 81.043 786 120 21 4244 5017 38729055 38729823 2.580000e-167 599.0
67 TraesCS3D01G222400 chr6A 80.435 322 44 13 4244 4556 270732010 270731699 1.410000e-55 228.0
68 TraesCS3D01G222400 chr5B 81.076 576 95 11 4440 5012 601862656 601862092 9.910000e-122 448.0
69 TraesCS3D01G222400 chr5B 77.305 282 60 4 3475 3754 641043561 641043840 4.020000e-36 163.0
70 TraesCS3D01G222400 chr5B 75.701 214 52 0 1605 1818 641043190 641043403 1.910000e-19 108.0
71 TraesCS3D01G222400 chr2B 82.031 384 50 16 4412 4789 130978028 130977658 4.880000e-80 309.0
72 TraesCS3D01G222400 chr2B 77.174 184 42 0 1613 1796 252977104 252976921 1.910000e-19 108.0
73 TraesCS3D01G222400 chr5A 88.462 182 21 0 187 368 340811937 340811756 2.350000e-53 220.0
74 TraesCS3D01G222400 chr5A 89.506 162 16 1 380 541 427200979 427200819 2.370000e-48 204.0
75 TraesCS3D01G222400 chr5A 85.484 186 22 4 2 186 69320812 69320631 6.630000e-44 189.0
76 TraesCS3D01G222400 chr2A 91.083 157 14 0 385 541 587601990 587602146 3.930000e-51 213.0
77 TraesCS3D01G222400 chr2A 89.759 166 15 2 387 551 167331723 167331559 1.420000e-50 211.0
78 TraesCS3D01G222400 chr2A 87.845 181 20 2 387 567 741328126 741328304 1.420000e-50 211.0
79 TraesCS3D01G222400 chr2A 87.363 182 23 0 187 368 207643207 207643026 5.090000e-50 209.0
80 TraesCS3D01G222400 chr2A 85.405 185 21 2 3408 3592 469876390 469876568 2.380000e-43 187.0
81 TraesCS3D01G222400 chr2A 76.259 278 60 6 1613 1887 211695009 211694735 5.240000e-30 143.0
82 TraesCS3D01G222400 chr7D 90.798 163 8 6 2093 2252 412389794 412389952 1.420000e-50 211.0
83 TraesCS3D01G222400 chr7D 90.000 160 15 1 387 546 427150543 427150385 6.580000e-49 206.0
84 TraesCS3D01G222400 chr7D 82.979 188 28 3 2 188 616440057 616440241 3.110000e-37 167.0
85 TraesCS3D01G222400 chr7A 91.026 156 14 0 387 542 191997589 191997434 1.420000e-50 211.0
86 TraesCS3D01G222400 chr1A 90.506 158 15 0 385 542 459702966 459703123 5.090000e-50 209.0
87 TraesCS3D01G222400 chr1A 85.946 185 20 2 3408 3592 343963378 343963556 5.130000e-45 193.0
88 TraesCS3D01G222400 chr6B 89.394 66 6 1 4177 4242 198406876 198406812 1.160000e-11 82.4
89 TraesCS3D01G222400 chrUn 95.238 42 2 0 1725 1766 99864111 99864152 3.240000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G222400 chr3D 303462150 303467166 5016 True 9265.000000 9265 100.000000 1 5017 1 chr3D.!!$R2 5016
1 TraesCS3D01G222400 chr3D 135370765 135371686 921 False 1347.000000 1347 93.348000 2080 2988 1 chr3D.!!$F2 908
2 TraesCS3D01G222400 chr3D 91033466 91034413 947 False 1249.000000 1249 90.605000 2208 3152 1 chr3D.!!$F1 944
3 TraesCS3D01G222400 chr3D 28502907 28503746 839 False 607.000000 1005 91.886000 2091 2876 2 chr3D.!!$F4 785
4 TraesCS3D01G222400 chr3A 431070038 431074712 4674 False 1096.500000 2333 94.839500 1 4181 4 chr3A.!!$F2 4180
5 TraesCS3D01G222400 chr3B 417957119 417959485 2366 False 1235.666667 1999 95.184333 701 4181 3 chr3B.!!$F2 3480
6 TraesCS3D01G222400 chr5D 306570463 306571424 961 False 1502.000000 1502 95.124000 2208 3153 1 chr5D.!!$F3 945
7 TraesCS3D01G222400 chr5D 58285580 58286638 1058 False 1293.000000 1293 88.899000 2090 3151 1 chr5D.!!$F1 1061
8 TraesCS3D01G222400 chr5D 549587534 549588509 975 True 1242.000000 1242 90.204000 2208 3151 1 chr5D.!!$R2 943
9 TraesCS3D01G222400 chr5D 175289679 175290446 767 True 688.000000 688 83.014000 4244 5017 1 chr5D.!!$R1 773
10 TraesCS3D01G222400 chr6D 400782535 400783494 959 False 1485.000000 1485 94.896000 2208 3149 1 chr6D.!!$F4 941
11 TraesCS3D01G222400 chr6D 463711155 463712252 1097 True 1435.000000 1435 90.991000 2093 3149 1 chr6D.!!$R3 1056
12 TraesCS3D01G222400 chr6D 35879135 35880121 986 True 1384.000000 1384 92.705000 2208 3151 1 chr6D.!!$R1 943
13 TraesCS3D01G222400 chr6D 450000049 450000738 689 True 1033.000000 1033 94.203000 2208 2876 1 chr6D.!!$R2 668
14 TraesCS3D01G222400 chr1D 29834129 29835106 977 True 1404.000000 1404 93.149000 2208 3152 1 chr1D.!!$R1 944
15 TraesCS3D01G222400 chr1D 323868929 323869878 949 False 1208.000000 1208 90.339000 2090 3011 1 chr1D.!!$F1 921
16 TraesCS3D01G222400 chr1D 474928033 474928800 767 False 715.000000 715 83.715000 4244 5017 1 chr1D.!!$F2 773
17 TraesCS3D01G222400 chr1D 30200743 30201510 767 True 627.000000 627 81.586000 4244 5017 1 chr1D.!!$R3 773
18 TraesCS3D01G222400 chr2D 637670997 637671653 656 True 1059.000000 1059 95.751000 2497 3153 1 chr2D.!!$R5 656
19 TraesCS3D01G222400 chr2D 6215476 6216314 838 False 616.500000 1027 92.121000 2093 2876 2 chr2D.!!$F3 783
20 TraesCS3D01G222400 chr4D 463691527 463692169 642 True 983.000000 983 94.712000 2208 2833 1 chr4D.!!$R3 625
21 TraesCS3D01G222400 chr4D 326376139 326376902 763 True 798.000000 798 85.641000 4244 5015 1 chr4D.!!$R1 771
22 TraesCS3D01G222400 chr4A 43224060 43224825 765 True 802.000000 802 85.641000 4244 5017 1 chr4A.!!$R1 773
23 TraesCS3D01G222400 chr4B 605790127 605790909 782 False 747.000000 747 84.217000 4243 5017 1 chr4B.!!$F1 774
24 TraesCS3D01G222400 chr7B 522731728 522732493 765 False 614.000000 614 81.542000 4244 5017 1 chr7B.!!$F2 773
25 TraesCS3D01G222400 chr6A 38729055 38729823 768 False 599.000000 599 81.043000 4244 5017 1 chr6A.!!$F1 773
26 TraesCS3D01G222400 chr5B 601862092 601862656 564 True 448.000000 448 81.076000 4440 5012 1 chr5B.!!$R1 572

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
974 1699 0.178944 ACCTTAAGCAAACCCCCACC 60.179 55.000 0.00 0.00 0.00 4.61 F
1912 2637 1.273887 GAAGATGTCGATTGCGCCG 59.726 57.895 4.18 0.37 37.46 6.46 F
3210 4644 0.605319 AAACGATTCTTGCCGGCAGA 60.605 50.000 30.75 24.65 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2970 3859 0.391263 GGTTTCTCTCCGCGGTCAAT 60.391 55.0 27.15 0.0 0.0 2.57 R
3245 4685 0.528684 GCGATACAGTCACCCAGAGC 60.529 60.0 0.00 0.0 0.0 4.09 R
4454 6398 0.117742 ACTAGGGTTCGGGGAAGGAA 59.882 55.0 0.00 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 8.736244 ACTTAAAGCATACCGTCAAATTTGTAT 58.264 29.630 17.47 5.75 0.00 2.29
63 64 8.903570 TTAAAGCATACCGTCAAATTTGTATG 57.096 30.769 17.47 16.91 42.07 2.39
75 76 7.379529 CGTCAAATTTGTATGTGAAAGAAGCTT 59.620 33.333 17.47 0.00 29.80 3.74
94 95 8.562892 AGAAGCTTCCATGATATAATTTTCACG 58.437 33.333 22.81 0.00 0.00 4.35
95 96 7.807977 AGCTTCCATGATATAATTTTCACGT 57.192 32.000 0.00 0.00 0.00 4.49
200 201 1.022735 GGAGTACTCTTCATCGGCGA 58.977 55.000 21.88 13.87 0.00 5.54
202 203 1.400846 GAGTACTCTTCATCGGCGACA 59.599 52.381 13.76 0.00 0.00 4.35
207 208 0.317160 TCTTCATCGGCGACAGTTGT 59.683 50.000 13.76 0.00 0.00 3.32
219 220 0.732571 ACAGTTGTTGTTCTGGTGCG 59.267 50.000 0.00 0.00 36.31 5.34
223 224 0.453793 TTGTTGTTCTGGTGCGTTGG 59.546 50.000 0.00 0.00 0.00 3.77
226 227 1.003223 GTTGTTCTGGTGCGTTGGTAC 60.003 52.381 0.00 0.00 0.00 3.34
231 232 1.206132 TCTGGTGCGTTGGTACTATGG 59.794 52.381 0.00 0.00 0.00 2.74
239 240 3.811083 CGTTGGTACTATGGGGCATTAA 58.189 45.455 0.00 0.00 0.00 1.40
255 256 2.320805 TTAACACGACGACTTCTCGG 57.679 50.000 0.00 0.00 44.80 4.63
306 307 1.096416 AACGAGGGAGAGACGATGAC 58.904 55.000 0.00 0.00 0.00 3.06
309 310 0.383949 GAGGGAGAGACGATGACAGC 59.616 60.000 0.00 0.00 0.00 4.40
335 336 2.734673 CTTCGGCTCGCTTCAGTGC 61.735 63.158 0.00 0.00 0.00 4.40
347 348 2.784380 GCTTCAGTGCTTATAGTCGTCG 59.216 50.000 0.00 0.00 0.00 5.12
368 369 3.821600 CGCTAGGTGGTCTATGTATCTGT 59.178 47.826 0.00 0.00 0.00 3.41
369 370 5.001874 CGCTAGGTGGTCTATGTATCTGTA 58.998 45.833 0.00 0.00 0.00 2.74
370 371 5.106634 CGCTAGGTGGTCTATGTATCTGTAC 60.107 48.000 0.00 0.00 0.00 2.90
371 372 5.106634 GCTAGGTGGTCTATGTATCTGTACG 60.107 48.000 0.00 0.00 33.36 3.67
372 373 4.789807 AGGTGGTCTATGTATCTGTACGT 58.210 43.478 0.00 0.00 33.36 3.57
373 374 5.198965 AGGTGGTCTATGTATCTGTACGTT 58.801 41.667 0.00 0.00 33.36 3.99
374 375 5.655532 AGGTGGTCTATGTATCTGTACGTTT 59.344 40.000 0.00 0.00 33.36 3.60
375 376 6.830324 AGGTGGTCTATGTATCTGTACGTTTA 59.170 38.462 0.00 0.00 33.36 2.01
376 377 7.504911 AGGTGGTCTATGTATCTGTACGTTTAT 59.495 37.037 0.00 0.00 33.36 1.40
377 378 7.806960 GGTGGTCTATGTATCTGTACGTTTATC 59.193 40.741 0.00 0.00 33.36 1.75
378 379 8.347771 GTGGTCTATGTATCTGTACGTTTATCA 58.652 37.037 0.00 0.00 33.36 2.15
379 380 8.905850 TGGTCTATGTATCTGTACGTTTATCAA 58.094 33.333 0.00 0.00 33.36 2.57
380 381 9.395707 GGTCTATGTATCTGTACGTTTATCAAG 57.604 37.037 0.00 0.00 33.36 3.02
383 384 9.395707 CTATGTATCTGTACGTTTATCAAGACC 57.604 37.037 0.00 0.00 33.36 3.85
384 385 6.260377 TGTATCTGTACGTTTATCAAGACCG 58.740 40.000 0.00 0.00 33.36 4.79
385 386 3.504863 TCTGTACGTTTATCAAGACCGC 58.495 45.455 0.00 0.00 0.00 5.68
386 387 3.057386 TCTGTACGTTTATCAAGACCGCA 60.057 43.478 0.00 0.00 0.00 5.69
387 388 3.852286 TGTACGTTTATCAAGACCGCAT 58.148 40.909 0.00 0.00 0.00 4.73
388 389 4.996344 TGTACGTTTATCAAGACCGCATA 58.004 39.130 0.00 0.00 0.00 3.14
389 390 5.409211 TGTACGTTTATCAAGACCGCATAA 58.591 37.500 0.00 0.00 0.00 1.90
390 391 6.044046 TGTACGTTTATCAAGACCGCATAAT 58.956 36.000 0.00 0.00 0.00 1.28
391 392 5.403897 ACGTTTATCAAGACCGCATAATG 57.596 39.130 0.00 0.00 0.00 1.90
392 393 4.873827 ACGTTTATCAAGACCGCATAATGT 59.126 37.500 0.00 0.00 0.00 2.71
393 394 5.197549 CGTTTATCAAGACCGCATAATGTG 58.802 41.667 0.00 0.00 0.00 3.21
394 395 5.006261 CGTTTATCAAGACCGCATAATGTGA 59.994 40.000 0.00 0.00 0.00 3.58
395 396 6.456315 CGTTTATCAAGACCGCATAATGTGAA 60.456 38.462 0.00 0.00 0.00 3.18
396 397 6.993786 TTATCAAGACCGCATAATGTGAAA 57.006 33.333 0.00 0.00 0.00 2.69
397 398 5.895636 ATCAAGACCGCATAATGTGAAAA 57.104 34.783 0.00 0.00 0.00 2.29
398 399 5.895636 TCAAGACCGCATAATGTGAAAAT 57.104 34.783 0.00 0.00 0.00 1.82
399 400 6.266168 TCAAGACCGCATAATGTGAAAATT 57.734 33.333 0.00 0.00 0.00 1.82
400 401 7.384439 TCAAGACCGCATAATGTGAAAATTA 57.616 32.000 0.00 0.00 0.00 1.40
401 402 7.995289 TCAAGACCGCATAATGTGAAAATTAT 58.005 30.769 0.00 0.00 33.85 1.28
402 403 9.114952 TCAAGACCGCATAATGTGAAAATTATA 57.885 29.630 0.00 0.00 32.22 0.98
403 404 9.897744 CAAGACCGCATAATGTGAAAATTATAT 57.102 29.630 0.00 0.00 32.22 0.86
405 406 8.443160 AGACCGCATAATGTGAAAATTATATCG 58.557 33.333 0.00 0.00 32.22 2.92
406 407 8.094798 ACCGCATAATGTGAAAATTATATCGT 57.905 30.769 0.00 0.00 32.22 3.73
407 408 8.564574 ACCGCATAATGTGAAAATTATATCGTT 58.435 29.630 0.00 0.00 32.22 3.85
416 417 9.042008 TGTGAAAATTATATCGTTAGAAGCTCC 57.958 33.333 0.00 0.00 0.00 4.70
417 418 9.262358 GTGAAAATTATATCGTTAGAAGCTCCT 57.738 33.333 0.00 0.00 0.00 3.69
418 419 9.832445 TGAAAATTATATCGTTAGAAGCTCCTT 57.168 29.630 0.00 0.00 0.00 3.36
421 422 9.832445 AAATTATATCGTTAGAAGCTCCTTTCA 57.168 29.630 0.00 0.00 0.00 2.69
422 423 8.819643 ATTATATCGTTAGAAGCTCCTTTCAC 57.180 34.615 0.00 0.00 0.00 3.18
423 424 4.537135 ATCGTTAGAAGCTCCTTTCACA 57.463 40.909 0.00 0.00 0.00 3.58
424 425 4.537135 TCGTTAGAAGCTCCTTTCACAT 57.463 40.909 0.00 0.00 0.00 3.21
425 426 5.654603 TCGTTAGAAGCTCCTTTCACATA 57.345 39.130 0.00 0.00 0.00 2.29
426 427 5.408356 TCGTTAGAAGCTCCTTTCACATAC 58.592 41.667 0.00 0.00 0.00 2.39
427 428 4.265556 CGTTAGAAGCTCCTTTCACATACG 59.734 45.833 0.00 0.00 0.00 3.06
428 429 5.408356 GTTAGAAGCTCCTTTCACATACGA 58.592 41.667 0.00 0.00 0.00 3.43
429 430 4.537135 AGAAGCTCCTTTCACATACGAA 57.463 40.909 0.00 0.00 0.00 3.85
430 431 5.091261 AGAAGCTCCTTTCACATACGAAT 57.909 39.130 0.00 0.00 0.00 3.34
431 432 5.491982 AGAAGCTCCTTTCACATACGAATT 58.508 37.500 0.00 0.00 0.00 2.17
432 433 5.940470 AGAAGCTCCTTTCACATACGAATTT 59.060 36.000 0.00 0.00 0.00 1.82
433 434 5.551760 AGCTCCTTTCACATACGAATTTG 57.448 39.130 0.00 0.00 0.00 2.32
434 435 5.245531 AGCTCCTTTCACATACGAATTTGA 58.754 37.500 0.00 0.00 0.00 2.69
435 436 5.882557 AGCTCCTTTCACATACGAATTTGAT 59.117 36.000 0.00 0.00 0.00 2.57
436 437 5.967674 GCTCCTTTCACATACGAATTTGATG 59.032 40.000 0.00 2.13 0.00 3.07
437 438 6.435430 TCCTTTCACATACGAATTTGATGG 57.565 37.500 0.00 0.00 0.00 3.51
438 439 5.943416 TCCTTTCACATACGAATTTGATGGT 59.057 36.000 0.00 0.00 0.00 3.55
439 440 6.029607 CCTTTCACATACGAATTTGATGGTG 58.970 40.000 0.00 4.64 0.00 4.17
440 441 6.349280 CCTTTCACATACGAATTTGATGGTGT 60.349 38.462 0.00 0.00 0.00 4.16
441 442 5.544136 TCACATACGAATTTGATGGTGTG 57.456 39.130 0.00 8.47 37.60 3.82
442 443 5.241662 TCACATACGAATTTGATGGTGTGA 58.758 37.500 16.04 16.04 41.44 3.58
443 444 5.879777 TCACATACGAATTTGATGGTGTGAT 59.120 36.000 16.04 0.00 39.57 3.06
444 445 6.374053 TCACATACGAATTTGATGGTGTGATT 59.626 34.615 16.04 0.00 39.57 2.57
445 446 7.028962 CACATACGAATTTGATGGTGTGATTT 58.971 34.615 0.00 0.00 38.29 2.17
446 447 7.008538 CACATACGAATTTGATGGTGTGATTTG 59.991 37.037 0.00 0.00 38.29 2.32
447 448 5.452078 ACGAATTTGATGGTGTGATTTGT 57.548 34.783 0.00 0.00 0.00 2.83
448 449 5.221880 ACGAATTTGATGGTGTGATTTGTG 58.778 37.500 0.00 0.00 0.00 3.33
449 450 5.221224 ACGAATTTGATGGTGTGATTTGTGT 60.221 36.000 0.00 0.00 0.00 3.72
450 451 6.016693 ACGAATTTGATGGTGTGATTTGTGTA 60.017 34.615 0.00 0.00 0.00 2.90
451 452 6.860539 CGAATTTGATGGTGTGATTTGTGTAA 59.139 34.615 0.00 0.00 0.00 2.41
452 453 7.148983 CGAATTTGATGGTGTGATTTGTGTAAC 60.149 37.037 0.00 0.00 37.35 2.50
453 454 6.707440 TTTGATGGTGTGATTTGTGTAACT 57.293 33.333 0.00 0.00 38.04 2.24
454 455 6.707440 TTGATGGTGTGATTTGTGTAACTT 57.293 33.333 0.00 0.00 38.04 2.66
455 456 6.070897 TGATGGTGTGATTTGTGTAACTTG 57.929 37.500 0.00 0.00 38.04 3.16
456 457 4.300189 TGGTGTGATTTGTGTAACTTGC 57.700 40.909 0.00 0.00 38.04 4.01
457 458 3.696548 TGGTGTGATTTGTGTAACTTGCA 59.303 39.130 0.00 0.00 38.04 4.08
458 459 4.340666 TGGTGTGATTTGTGTAACTTGCAT 59.659 37.500 0.00 0.00 38.04 3.96
459 460 4.681025 GGTGTGATTTGTGTAACTTGCATG 59.319 41.667 0.00 0.00 38.04 4.06
460 461 5.280945 GTGTGATTTGTGTAACTTGCATGT 58.719 37.500 0.00 0.00 38.04 3.21
461 462 5.399301 GTGTGATTTGTGTAACTTGCATGTC 59.601 40.000 5.61 0.00 38.04 3.06
462 463 5.067023 TGTGATTTGTGTAACTTGCATGTCA 59.933 36.000 5.61 0.00 38.04 3.58
463 464 6.151691 GTGATTTGTGTAACTTGCATGTCAT 58.848 36.000 5.61 0.00 38.04 3.06
464 465 7.040823 TGTGATTTGTGTAACTTGCATGTCATA 60.041 33.333 5.61 0.00 38.04 2.15
465 466 7.271223 GTGATTTGTGTAACTTGCATGTCATAC 59.729 37.037 5.61 6.66 38.04 2.39
466 467 6.625873 TTTGTGTAACTTGCATGTCATACA 57.374 33.333 5.61 9.06 38.04 2.29
467 468 6.816134 TTGTGTAACTTGCATGTCATACAT 57.184 33.333 16.05 0.53 37.16 2.29
468 469 6.816134 TGTGTAACTTGCATGTCATACATT 57.184 33.333 16.05 0.00 35.22 2.71
469 470 7.913674 TGTGTAACTTGCATGTCATACATTA 57.086 32.000 16.05 9.07 35.22 1.90
470 471 8.504812 TGTGTAACTTGCATGTCATACATTAT 57.495 30.769 16.05 0.00 35.22 1.28
471 472 8.955388 TGTGTAACTTGCATGTCATACATTATT 58.045 29.630 16.05 0.00 35.22 1.40
472 473 9.225201 GTGTAACTTGCATGTCATACATTATTG 57.775 33.333 16.05 0.00 36.53 1.90
473 474 7.914871 TGTAACTTGCATGTCATACATTATTGC 59.085 33.333 5.61 0.00 36.53 3.56
474 475 6.704289 ACTTGCATGTCATACATTATTGCT 57.296 33.333 0.00 0.00 36.53 3.91
475 476 6.732154 ACTTGCATGTCATACATTATTGCTC 58.268 36.000 0.00 0.00 36.53 4.26
476 477 6.544931 ACTTGCATGTCATACATTATTGCTCT 59.455 34.615 0.00 0.00 36.53 4.09
477 478 7.716560 ACTTGCATGTCATACATTATTGCTCTA 59.283 33.333 0.00 0.00 36.53 2.43
478 479 8.449251 TTGCATGTCATACATTATTGCTCTAA 57.551 30.769 0.00 0.00 36.53 2.10
479 480 7.864686 TGCATGTCATACATTATTGCTCTAAC 58.135 34.615 0.00 0.00 36.53 2.34
480 481 7.498570 TGCATGTCATACATTATTGCTCTAACA 59.501 33.333 0.00 0.00 36.53 2.41
481 482 7.800380 GCATGTCATACATTATTGCTCTAACAC 59.200 37.037 0.00 0.00 36.53 3.32
482 483 9.049523 CATGTCATACATTATTGCTCTAACACT 57.950 33.333 0.00 0.00 36.53 3.55
483 484 9.618890 ATGTCATACATTATTGCTCTAACACTT 57.381 29.630 0.00 0.00 34.67 3.16
484 485 8.882736 TGTCATACATTATTGCTCTAACACTTG 58.117 33.333 0.00 0.00 0.00 3.16
485 486 9.098355 GTCATACATTATTGCTCTAACACTTGA 57.902 33.333 0.00 0.00 0.00 3.02
486 487 9.836864 TCATACATTATTGCTCTAACACTTGAT 57.163 29.630 0.00 0.00 0.00 2.57
488 489 9.836864 ATACATTATTGCTCTAACACTTGATCA 57.163 29.630 0.00 0.00 0.00 2.92
489 490 8.565896 ACATTATTGCTCTAACACTTGATCAA 57.434 30.769 8.12 8.12 0.00 2.57
490 491 9.013229 ACATTATTGCTCTAACACTTGATCAAA 57.987 29.630 9.88 0.00 0.00 2.69
491 492 9.499585 CATTATTGCTCTAACACTTGATCAAAG 57.500 33.333 9.88 7.73 42.07 2.77
503 504 5.862924 CTTGATCAAAGTTAGCCTCGAAA 57.137 39.130 9.88 0.00 0.00 3.46
504 505 6.241207 CTTGATCAAAGTTAGCCTCGAAAA 57.759 37.500 9.88 0.00 0.00 2.29
505 506 6.627395 TTGATCAAAGTTAGCCTCGAAAAA 57.373 33.333 5.45 0.00 0.00 1.94
506 507 5.997385 TGATCAAAGTTAGCCTCGAAAAAC 58.003 37.500 0.00 0.00 0.00 2.43
507 508 5.529430 TGATCAAAGTTAGCCTCGAAAAACA 59.471 36.000 0.00 0.00 0.00 2.83
508 509 6.206634 TGATCAAAGTTAGCCTCGAAAAACAT 59.793 34.615 0.00 0.00 0.00 2.71
509 510 7.389330 TGATCAAAGTTAGCCTCGAAAAACATA 59.611 33.333 0.00 0.00 0.00 2.29
510 511 7.681939 TCAAAGTTAGCCTCGAAAAACATAT 57.318 32.000 0.00 0.00 0.00 1.78
511 512 8.106247 TCAAAGTTAGCCTCGAAAAACATATT 57.894 30.769 0.00 0.00 0.00 1.28
512 513 9.221933 TCAAAGTTAGCCTCGAAAAACATATTA 57.778 29.630 0.00 0.00 0.00 0.98
513 514 9.490663 CAAAGTTAGCCTCGAAAAACATATTAG 57.509 33.333 0.00 0.00 0.00 1.73
514 515 7.787725 AGTTAGCCTCGAAAAACATATTAGG 57.212 36.000 0.00 0.00 0.00 2.69
515 516 6.260271 AGTTAGCCTCGAAAAACATATTAGGC 59.740 38.462 0.00 0.00 46.67 3.93
516 517 4.893424 GCCTCGAAAAACATATTAGGCA 57.107 40.909 5.61 0.00 45.81 4.75
517 518 5.438761 GCCTCGAAAAACATATTAGGCAT 57.561 39.130 5.61 0.00 45.81 4.40
518 519 5.831997 GCCTCGAAAAACATATTAGGCATT 58.168 37.500 5.61 0.00 45.81 3.56
519 520 6.966021 GCCTCGAAAAACATATTAGGCATTA 58.034 36.000 5.61 0.00 45.81 1.90
520 521 7.593825 GCCTCGAAAAACATATTAGGCATTAT 58.406 34.615 5.61 0.00 45.81 1.28
521 522 8.726988 GCCTCGAAAAACATATTAGGCATTATA 58.273 33.333 5.61 0.00 45.81 0.98
535 536 6.760440 AGGCATTATATAGATGGATGGAGG 57.240 41.667 0.00 0.00 0.00 4.30
536 537 5.610132 AGGCATTATATAGATGGATGGAGGG 59.390 44.000 0.00 0.00 0.00 4.30
537 538 5.608437 GGCATTATATAGATGGATGGAGGGA 59.392 44.000 0.00 0.00 0.00 4.20
538 539 6.239829 GGCATTATATAGATGGATGGAGGGAG 60.240 46.154 0.00 0.00 0.00 4.30
539 540 6.328672 GCATTATATAGATGGATGGAGGGAGT 59.671 42.308 6.89 0.00 0.00 3.85
542 543 9.836179 ATTATATAGATGGATGGAGGGAGTATC 57.164 37.037 0.00 0.00 0.00 2.24
550 551 7.079451 TGGATGGAGGGAGTATCTAATTTTC 57.921 40.000 0.00 0.00 33.73 2.29
553 554 8.166726 GGATGGAGGGAGTATCTAATTTTCATT 58.833 37.037 0.00 0.00 33.73 2.57
596 615 9.456147 TTTATTGAGATCGAAAGTTTTCCCATA 57.544 29.630 0.00 0.00 33.68 2.74
621 1342 2.295253 AAATGCGCTAACTAGTCGCT 57.705 45.000 22.90 10.03 43.76 4.93
626 1347 1.278238 CGCTAACTAGTCGCTTTGGG 58.722 55.000 13.28 0.00 0.00 4.12
633 1354 0.524862 TAGTCGCTTTGGGAGTCGTC 59.475 55.000 0.00 0.00 30.87 4.20
640 1361 2.023414 TTTGGGAGTCGTCTGTGCGT 62.023 55.000 0.00 0.00 0.00 5.24
671 1392 3.122150 CGAGGACGTGCTGAATTGA 57.878 52.632 16.62 0.00 34.56 2.57
821 1542 4.843220 AATCTCCTTTGTGAAGTTGCAG 57.157 40.909 0.00 0.00 0.00 4.41
861 1586 5.400552 TGGTCAATCATCAATCCCCATTA 57.599 39.130 0.00 0.00 0.00 1.90
862 1587 5.387788 TGGTCAATCATCAATCCCCATTAG 58.612 41.667 0.00 0.00 0.00 1.73
872 1597 1.492764 TCCCCATTAGAACCGACCTC 58.507 55.000 0.00 0.00 0.00 3.85
874 1599 1.108776 CCCATTAGAACCGACCTCGA 58.891 55.000 0.00 0.00 43.02 4.04
875 1600 1.687123 CCCATTAGAACCGACCTCGAT 59.313 52.381 0.00 0.00 43.02 3.59
974 1699 0.178944 ACCTTAAGCAAACCCCCACC 60.179 55.000 0.00 0.00 0.00 4.61
1019 1744 2.060567 ATGGCCATGACATCCCCGAG 62.061 60.000 20.04 0.00 0.00 4.63
1053 1778 2.486504 CGGTACAAGAGCGCCGTA 59.513 61.111 2.29 0.00 43.00 4.02
1389 2114 4.988598 AAGGTCACGTGGCGCCTG 62.989 66.667 29.70 22.27 0.00 4.85
1767 2492 4.643387 GGCACCGGCAAGTCCAGT 62.643 66.667 0.00 0.00 43.71 4.00
1885 2610 3.132289 TCGGATGAAGAACAGGTCCATAC 59.868 47.826 0.00 0.00 30.44 2.39
1912 2637 1.273887 GAAGATGTCGATTGCGCCG 59.726 57.895 4.18 0.37 37.46 6.46
2031 2756 6.442487 CAACTCATGTTGCAAGTTGTAATG 57.558 37.500 16.63 5.44 45.57 1.90
2032 2757 5.125100 ACTCATGTTGCAAGTTGTAATGG 57.875 39.130 9.69 3.32 0.00 3.16
2033 2758 4.826733 ACTCATGTTGCAAGTTGTAATGGA 59.173 37.500 9.69 7.08 0.00 3.41
2034 2759 5.119931 TCATGTTGCAAGTTGTAATGGAC 57.880 39.130 9.69 0.00 0.00 4.02
2035 2760 4.582240 TCATGTTGCAAGTTGTAATGGACA 59.418 37.500 9.69 4.33 35.78 4.02
2036 2761 4.991153 TGTTGCAAGTTGTAATGGACAA 57.009 36.364 9.69 0.00 46.03 3.18
2635 3512 1.709578 TGCCATGTACCCTGCAAAAA 58.290 45.000 0.00 0.00 0.00 1.94
3068 3959 4.354893 AAATCAGCCTTTTCATGCCAAA 57.645 36.364 0.00 0.00 0.00 3.28
3124 4015 1.758280 TGTGGGTGAGTTGTCTAACGT 59.242 47.619 0.00 0.00 41.71 3.99
3153 4045 2.543430 GTGGGCGTTAGTGTTTTCGTTA 59.457 45.455 0.00 0.00 0.00 3.18
3154 4046 2.801679 TGGGCGTTAGTGTTTTCGTTAG 59.198 45.455 0.00 0.00 0.00 2.34
3155 4047 3.059166 GGGCGTTAGTGTTTTCGTTAGA 58.941 45.455 0.00 0.00 0.00 2.10
3156 4048 3.120889 GGGCGTTAGTGTTTTCGTTAGAC 60.121 47.826 0.00 0.00 0.00 2.59
3157 4049 3.737774 GGCGTTAGTGTTTTCGTTAGACT 59.262 43.478 0.00 0.00 0.00 3.24
3158 4050 4.917415 GGCGTTAGTGTTTTCGTTAGACTA 59.083 41.667 0.00 0.00 0.00 2.59
3159 4051 5.574443 GGCGTTAGTGTTTTCGTTAGACTAT 59.426 40.000 0.00 0.00 0.00 2.12
3160 4052 6.089954 GGCGTTAGTGTTTTCGTTAGACTATT 59.910 38.462 0.00 0.00 0.00 1.73
3161 4053 7.162898 GCGTTAGTGTTTTCGTTAGACTATTC 58.837 38.462 0.00 0.00 0.00 1.75
3162 4054 7.061557 GCGTTAGTGTTTTCGTTAGACTATTCT 59.938 37.037 0.00 0.00 35.66 2.40
3163 4055 8.909671 CGTTAGTGTTTTCGTTAGACTATTCTT 58.090 33.333 0.00 0.00 32.75 2.52
3205 4639 4.921470 TTTCTAGAAACGATTCTTGCCG 57.079 40.909 13.99 1.14 43.43 5.69
3210 4644 0.605319 AAACGATTCTTGCCGGCAGA 60.605 50.000 30.75 24.65 0.00 4.26
3223 4663 0.888619 CGGCAGAACTCTGTACTCCA 59.111 55.000 8.46 0.00 45.45 3.86
3224 4664 1.135257 CGGCAGAACTCTGTACTCCAG 60.135 57.143 8.46 0.00 45.45 3.86
3227 4667 2.928731 GCAGAACTCTGTACTCCAGCAC 60.929 54.545 8.46 0.00 45.45 4.40
3245 4685 5.005971 CCAGCACTGAAACAATCAAACAAAG 59.994 40.000 0.00 0.00 37.67 2.77
3296 5227 0.042188 CACGAAAACGACAGCACTGG 60.042 55.000 2.21 0.00 34.19 4.00
3352 5283 1.557832 TGGGTCACTGTATAGGCAACC 59.442 52.381 0.00 0.00 37.17 3.77
3415 5346 2.294233 GAGCAGTTGCCACTTCATTTCA 59.706 45.455 0.00 0.00 43.38 2.69
3461 5392 3.385111 CCTACTCCTACCAACTAAGCTGG 59.615 52.174 0.00 0.00 40.05 4.85
3565 5496 1.881973 CATCTTCACCACCAACCACAG 59.118 52.381 0.00 0.00 0.00 3.66
3575 5506 3.637273 AACCACAGGGACCGGCTC 61.637 66.667 0.00 0.00 38.05 4.70
3632 5563 1.192146 ACGTCCACATGGGCTACTGT 61.192 55.000 0.20 0.00 37.76 3.55
3680 5611 0.744414 CCAACTACCACGGCATCCAG 60.744 60.000 0.00 0.00 0.00 3.86
4123 6061 6.842163 TGAAAGAAACTTATCATTCTTCGCC 58.158 36.000 1.66 0.00 43.24 5.54
4161 6099 9.274065 GAGCGGAATTTGTTGTAGTTTTATTAG 57.726 33.333 0.00 0.00 0.00 1.73
4181 6119 0.396139 AATGTTCATGGCCGGCTCAT 60.396 50.000 28.56 23.89 0.00 2.90
4182 6120 0.473755 ATGTTCATGGCCGGCTCATA 59.526 50.000 28.56 12.78 0.00 2.15
4183 6121 0.179048 TGTTCATGGCCGGCTCATAG 60.179 55.000 28.56 19.54 0.00 2.23
4184 6122 0.886490 GTTCATGGCCGGCTCATAGG 60.886 60.000 28.56 15.95 0.00 2.57
4185 6123 2.033141 CATGGCCGGCTCATAGGG 59.967 66.667 28.56 12.10 0.00 3.53
4186 6124 3.252284 ATGGCCGGCTCATAGGGG 61.252 66.667 28.56 0.00 0.00 4.79
4189 6127 4.632974 GCCGGCTCATAGGGGCAG 62.633 72.222 22.15 0.00 44.91 4.85
4190 6128 3.946201 CCGGCTCATAGGGGCAGG 61.946 72.222 3.48 3.48 37.44 4.85
4191 6129 3.946201 CGGCTCATAGGGGCAGGG 61.946 72.222 0.00 0.00 0.00 4.45
4192 6130 2.774351 GGCTCATAGGGGCAGGGT 60.774 66.667 0.00 0.00 0.00 4.34
4193 6131 2.512896 GCTCATAGGGGCAGGGTG 59.487 66.667 0.00 0.00 0.00 4.61
4194 6132 2.378634 GCTCATAGGGGCAGGGTGT 61.379 63.158 0.00 0.00 0.00 4.16
4195 6133 1.528824 CTCATAGGGGCAGGGTGTG 59.471 63.158 0.00 0.00 0.00 3.82
4215 6153 3.065019 GCATGTGTGCGTTTTATAGGG 57.935 47.619 0.00 0.00 42.28 3.53
4216 6154 2.223479 GCATGTGTGCGTTTTATAGGGG 60.223 50.000 0.00 0.00 42.28 4.79
4217 6155 2.863132 TGTGTGCGTTTTATAGGGGT 57.137 45.000 0.00 0.00 0.00 4.95
4218 6156 2.428491 TGTGTGCGTTTTATAGGGGTG 58.572 47.619 0.00 0.00 0.00 4.61
4219 6157 2.038689 TGTGTGCGTTTTATAGGGGTGA 59.961 45.455 0.00 0.00 0.00 4.02
4220 6158 2.676342 GTGTGCGTTTTATAGGGGTGAG 59.324 50.000 0.00 0.00 0.00 3.51
4221 6159 2.303600 TGTGCGTTTTATAGGGGTGAGT 59.696 45.455 0.00 0.00 0.00 3.41
4222 6160 2.676342 GTGCGTTTTATAGGGGTGAGTG 59.324 50.000 0.00 0.00 0.00 3.51
4223 6161 2.303600 TGCGTTTTATAGGGGTGAGTGT 59.696 45.455 0.00 0.00 0.00 3.55
4224 6162 3.514706 TGCGTTTTATAGGGGTGAGTGTA 59.485 43.478 0.00 0.00 0.00 2.90
4225 6163 4.162698 TGCGTTTTATAGGGGTGAGTGTAT 59.837 41.667 0.00 0.00 0.00 2.29
4226 6164 4.510340 GCGTTTTATAGGGGTGAGTGTATG 59.490 45.833 0.00 0.00 0.00 2.39
4227 6165 5.667466 CGTTTTATAGGGGTGAGTGTATGT 58.333 41.667 0.00 0.00 0.00 2.29
4228 6166 5.522460 CGTTTTATAGGGGTGAGTGTATGTG 59.478 44.000 0.00 0.00 0.00 3.21
4229 6167 4.682778 TTATAGGGGTGAGTGTATGTGC 57.317 45.455 0.00 0.00 0.00 4.57
4230 6168 0.821517 TAGGGGTGAGTGTATGTGCG 59.178 55.000 0.00 0.00 0.00 5.34
4231 6169 1.192146 AGGGGTGAGTGTATGTGCGT 61.192 55.000 0.00 0.00 0.00 5.24
4232 6170 0.533491 GGGGTGAGTGTATGTGCGTA 59.467 55.000 0.00 0.00 0.00 4.42
4233 6171 1.138266 GGGGTGAGTGTATGTGCGTAT 59.862 52.381 0.00 0.00 0.00 3.06
4234 6172 2.363038 GGGGTGAGTGTATGTGCGTATA 59.637 50.000 0.00 0.00 0.00 1.47
4235 6173 3.006537 GGGGTGAGTGTATGTGCGTATAT 59.993 47.826 0.00 0.00 0.00 0.86
4236 6174 4.219070 GGGGTGAGTGTATGTGCGTATATA 59.781 45.833 0.00 0.00 0.00 0.86
4237 6175 5.105473 GGGGTGAGTGTATGTGCGTATATAT 60.105 44.000 0.00 0.00 0.00 0.86
4238 6176 5.805486 GGGTGAGTGTATGTGCGTATATATG 59.195 44.000 0.00 0.00 0.00 1.78
4239 6177 6.349860 GGGTGAGTGTATGTGCGTATATATGA 60.350 42.308 6.12 0.00 0.00 2.15
4240 6178 6.747739 GGTGAGTGTATGTGCGTATATATGAG 59.252 42.308 6.12 0.00 0.00 2.90
4241 6179 6.251589 GTGAGTGTATGTGCGTATATATGAGC 59.748 42.308 6.12 1.54 0.00 4.26
4378 6316 3.030652 CGTTGAAGCCCACCACAC 58.969 61.111 0.00 0.00 0.00 3.82
4455 6399 3.846430 GCGGCGGCTACCTACCTT 61.846 66.667 9.78 0.00 35.83 3.50
4460 6404 0.104487 GCGGCTACCTACCTTCCTTC 59.896 60.000 0.00 0.00 0.00 3.46
4541 6516 7.284074 TGTAATAGCTACTACTTCAGAGAGCT 58.716 38.462 13.12 0.00 44.21 4.09
4542 6517 7.776030 TGTAATAGCTACTACTTCAGAGAGCTT 59.224 37.037 13.12 0.00 41.38 3.74
4543 6518 9.275398 GTAATAGCTACTACTTCAGAGAGCTTA 57.725 37.037 5.11 0.00 41.38 3.09
4557 6532 5.652014 CAGAGAGCTTAATAGATCGATCCCT 59.348 44.000 21.66 7.09 41.66 4.20
4566 6541 1.062886 AGATCGATCCCTCCACCTTGA 60.063 52.381 21.66 0.00 0.00 3.02
4746 6751 1.003355 CGTCCTGACCAAGGCACAT 60.003 57.895 0.00 0.00 46.92 3.21
4768 6773 1.816835 AGTCTACGGCGACAAAGATCA 59.183 47.619 16.62 0.00 36.38 2.92
4930 6935 3.234730 ATCCACGAGGGCCCGATC 61.235 66.667 18.44 8.82 36.21 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 9.646336 CGGTATGCTTTAAGTAATTTGTATGTC 57.354 33.333 0.00 0.00 0.00 3.06
29 30 7.675962 TGACGGTATGCTTTAAGTAATTTGT 57.324 32.000 0.00 0.00 0.00 2.83
33 34 9.567848 CAAATTTGACGGTATGCTTTAAGTAAT 57.432 29.630 13.08 0.00 0.00 1.89
38 39 8.516234 ACATACAAATTTGACGGTATGCTTTAA 58.484 29.630 24.64 0.00 44.22 1.52
39 40 7.965655 CACATACAAATTTGACGGTATGCTTTA 59.034 33.333 24.64 2.48 44.22 1.85
41 42 6.150307 TCACATACAAATTTGACGGTATGCTT 59.850 34.615 24.64 4.89 44.22 3.91
49 50 6.857964 AGCTTCTTTCACATACAAATTTGACG 59.142 34.615 24.64 13.58 0.00 4.35
57 58 6.003326 TCATGGAAGCTTCTTTCACATACAA 58.997 36.000 25.05 6.86 0.00 2.41
58 59 5.559770 TCATGGAAGCTTCTTTCACATACA 58.440 37.500 25.05 11.90 0.00 2.29
62 63 8.985315 ATTATATCATGGAAGCTTCTTTCACA 57.015 30.769 25.05 14.69 0.00 3.58
200 201 0.732571 CGCACCAGAACAACAACTGT 59.267 50.000 0.00 0.00 41.27 3.55
202 203 1.132262 CAACGCACCAGAACAACAACT 59.868 47.619 0.00 0.00 0.00 3.16
207 208 1.134340 AGTACCAACGCACCAGAACAA 60.134 47.619 0.00 0.00 0.00 2.83
219 220 4.337274 GTGTTAATGCCCCATAGTACCAAC 59.663 45.833 0.00 0.00 0.00 3.77
223 224 3.805971 GTCGTGTTAATGCCCCATAGTAC 59.194 47.826 0.00 0.00 0.00 2.73
226 227 1.864711 CGTCGTGTTAATGCCCCATAG 59.135 52.381 0.00 0.00 0.00 2.23
231 232 1.392510 GAAGTCGTCGTGTTAATGCCC 59.607 52.381 0.00 0.00 0.00 5.36
239 240 0.952497 TAGCCGAGAAGTCGTCGTGT 60.952 55.000 0.00 0.00 45.30 4.49
255 256 6.194692 GCGCAAAACTTGTTGTAATAGATAGC 59.805 38.462 0.30 0.00 0.00 2.97
290 291 0.383949 GCTGTCATCGTCTCTCCCTC 59.616 60.000 0.00 0.00 0.00 4.30
294 295 1.587613 GCCGCTGTCATCGTCTCTC 60.588 63.158 0.00 0.00 0.00 3.20
316 317 1.080501 CACTGAAGCGAGCCGAAGA 60.081 57.895 0.00 0.00 0.00 2.87
320 321 0.807667 ATAAGCACTGAAGCGAGCCG 60.808 55.000 0.00 0.00 40.15 5.52
322 323 2.792116 GACTATAAGCACTGAAGCGAGC 59.208 50.000 0.00 0.00 40.15 5.03
335 336 2.877168 ACCACCTAGCGACGACTATAAG 59.123 50.000 0.00 0.00 0.00 1.73
347 348 5.106634 CGTACAGATACATAGACCACCTAGC 60.107 48.000 0.00 0.00 0.00 3.42
368 369 6.019398 CACATTATGCGGTCTTGATAAACGTA 60.019 38.462 0.00 0.00 0.00 3.57
369 370 4.873827 ACATTATGCGGTCTTGATAAACGT 59.126 37.500 0.00 0.00 0.00 3.99
370 371 5.006261 TCACATTATGCGGTCTTGATAAACG 59.994 40.000 0.00 0.00 0.00 3.60
371 372 6.358118 TCACATTATGCGGTCTTGATAAAC 57.642 37.500 0.00 0.00 0.00 2.01
372 373 6.993786 TTCACATTATGCGGTCTTGATAAA 57.006 33.333 0.00 0.00 0.00 1.40
373 374 6.993786 TTTCACATTATGCGGTCTTGATAA 57.006 33.333 0.00 0.00 0.00 1.75
374 375 6.993786 TTTTCACATTATGCGGTCTTGATA 57.006 33.333 0.00 0.00 0.00 2.15
375 376 5.895636 TTTTCACATTATGCGGTCTTGAT 57.104 34.783 0.00 0.00 0.00 2.57
376 377 5.895636 ATTTTCACATTATGCGGTCTTGA 57.104 34.783 0.00 0.00 0.00 3.02
377 378 9.897744 ATATAATTTTCACATTATGCGGTCTTG 57.102 29.630 0.00 0.00 32.58 3.02
379 380 8.443160 CGATATAATTTTCACATTATGCGGTCT 58.557 33.333 0.00 0.00 32.58 3.85
380 381 8.227791 ACGATATAATTTTCACATTATGCGGTC 58.772 33.333 0.00 0.00 35.14 4.79
381 382 8.094798 ACGATATAATTTTCACATTATGCGGT 57.905 30.769 0.00 0.00 35.14 5.68
382 383 8.948853 AACGATATAATTTTCACATTATGCGG 57.051 30.769 0.00 0.00 35.14 5.69
390 391 9.042008 GGAGCTTCTAACGATATAATTTTCACA 57.958 33.333 0.00 0.00 0.00 3.58
391 392 9.262358 AGGAGCTTCTAACGATATAATTTTCAC 57.738 33.333 0.00 0.00 0.00 3.18
392 393 9.832445 AAGGAGCTTCTAACGATATAATTTTCA 57.168 29.630 0.00 0.00 0.00 2.69
395 396 9.832445 TGAAAGGAGCTTCTAACGATATAATTT 57.168 29.630 0.00 0.00 0.00 1.82
396 397 9.262358 GTGAAAGGAGCTTCTAACGATATAATT 57.738 33.333 0.00 0.00 0.00 1.40
397 398 8.421784 TGTGAAAGGAGCTTCTAACGATATAAT 58.578 33.333 0.00 0.00 0.00 1.28
398 399 7.778083 TGTGAAAGGAGCTTCTAACGATATAA 58.222 34.615 0.00 0.00 0.00 0.98
399 400 7.342769 TGTGAAAGGAGCTTCTAACGATATA 57.657 36.000 0.00 0.00 0.00 0.86
400 401 6.222038 TGTGAAAGGAGCTTCTAACGATAT 57.778 37.500 0.00 0.00 0.00 1.63
401 402 5.654603 TGTGAAAGGAGCTTCTAACGATA 57.345 39.130 0.00 0.00 0.00 2.92
402 403 4.537135 TGTGAAAGGAGCTTCTAACGAT 57.463 40.909 0.00 0.00 0.00 3.73
403 404 4.537135 ATGTGAAAGGAGCTTCTAACGA 57.463 40.909 0.00 0.00 0.00 3.85
404 405 4.265556 CGTATGTGAAAGGAGCTTCTAACG 59.734 45.833 0.00 0.00 0.00 3.18
405 406 5.408356 TCGTATGTGAAAGGAGCTTCTAAC 58.592 41.667 0.00 0.00 0.00 2.34
406 407 5.654603 TCGTATGTGAAAGGAGCTTCTAA 57.345 39.130 0.00 0.00 0.00 2.10
407 408 5.654603 TTCGTATGTGAAAGGAGCTTCTA 57.345 39.130 0.00 0.00 0.00 2.10
408 409 4.537135 TTCGTATGTGAAAGGAGCTTCT 57.463 40.909 0.00 0.00 0.00 2.85
409 410 5.803020 AATTCGTATGTGAAAGGAGCTTC 57.197 39.130 0.00 0.00 0.00 3.86
410 411 5.705441 TCAAATTCGTATGTGAAAGGAGCTT 59.295 36.000 0.00 0.00 0.00 3.74
411 412 5.245531 TCAAATTCGTATGTGAAAGGAGCT 58.754 37.500 0.00 0.00 0.00 4.09
412 413 5.545658 TCAAATTCGTATGTGAAAGGAGC 57.454 39.130 0.00 0.00 0.00 4.70
413 414 6.094048 ACCATCAAATTCGTATGTGAAAGGAG 59.906 38.462 18.03 2.97 33.83 3.69
414 415 5.943416 ACCATCAAATTCGTATGTGAAAGGA 59.057 36.000 18.03 0.00 33.83 3.36
415 416 6.029607 CACCATCAAATTCGTATGTGAAAGG 58.970 40.000 12.56 12.56 35.19 3.11
416 417 6.524239 CACACCATCAAATTCGTATGTGAAAG 59.476 38.462 0.00 0.00 38.76 2.62
417 418 6.205658 TCACACCATCAAATTCGTATGTGAAA 59.794 34.615 0.00 0.00 41.50 2.69
418 419 5.703130 TCACACCATCAAATTCGTATGTGAA 59.297 36.000 0.00 0.00 41.50 3.18
419 420 5.241662 TCACACCATCAAATTCGTATGTGA 58.758 37.500 0.00 0.00 42.03 3.58
420 421 5.544136 TCACACCATCAAATTCGTATGTG 57.456 39.130 0.00 0.00 38.01 3.21
421 422 6.757897 AATCACACCATCAAATTCGTATGT 57.242 33.333 0.00 0.00 0.00 2.29
422 423 7.008538 CACAAATCACACCATCAAATTCGTATG 59.991 37.037 0.00 0.00 0.00 2.39
423 424 7.028962 CACAAATCACACCATCAAATTCGTAT 58.971 34.615 0.00 0.00 0.00 3.06
424 425 6.016693 ACACAAATCACACCATCAAATTCGTA 60.017 34.615 0.00 0.00 0.00 3.43
425 426 5.221224 ACACAAATCACACCATCAAATTCGT 60.221 36.000 0.00 0.00 0.00 3.85
426 427 5.221880 ACACAAATCACACCATCAAATTCG 58.778 37.500 0.00 0.00 0.00 3.34
427 428 7.867403 AGTTACACAAATCACACCATCAAATTC 59.133 33.333 0.00 0.00 0.00 2.17
428 429 7.725251 AGTTACACAAATCACACCATCAAATT 58.275 30.769 0.00 0.00 0.00 1.82
429 430 7.288810 AGTTACACAAATCACACCATCAAAT 57.711 32.000 0.00 0.00 0.00 2.32
430 431 6.707440 AGTTACACAAATCACACCATCAAA 57.293 33.333 0.00 0.00 0.00 2.69
431 432 6.502652 CAAGTTACACAAATCACACCATCAA 58.497 36.000 0.00 0.00 0.00 2.57
432 433 5.507149 GCAAGTTACACAAATCACACCATCA 60.507 40.000 0.00 0.00 0.00 3.07
433 434 4.917415 GCAAGTTACACAAATCACACCATC 59.083 41.667 0.00 0.00 0.00 3.51
434 435 4.340666 TGCAAGTTACACAAATCACACCAT 59.659 37.500 0.00 0.00 0.00 3.55
435 436 3.696548 TGCAAGTTACACAAATCACACCA 59.303 39.130 0.00 0.00 0.00 4.17
436 437 4.300189 TGCAAGTTACACAAATCACACC 57.700 40.909 0.00 0.00 0.00 4.16
437 438 5.280945 ACATGCAAGTTACACAAATCACAC 58.719 37.500 0.00 0.00 0.00 3.82
438 439 5.067023 TGACATGCAAGTTACACAAATCACA 59.933 36.000 0.00 0.00 0.00 3.58
439 440 5.518812 TGACATGCAAGTTACACAAATCAC 58.481 37.500 0.00 0.00 0.00 3.06
440 441 5.764487 TGACATGCAAGTTACACAAATCA 57.236 34.783 0.00 0.00 0.00 2.57
441 442 7.304735 TGTATGACATGCAAGTTACACAAATC 58.695 34.615 3.48 0.00 0.00 2.17
442 443 7.213216 TGTATGACATGCAAGTTACACAAAT 57.787 32.000 3.48 0.00 0.00 2.32
443 444 6.625873 TGTATGACATGCAAGTTACACAAA 57.374 33.333 3.48 0.00 0.00 2.83
444 445 6.816134 ATGTATGACATGCAAGTTACACAA 57.184 33.333 10.39 0.00 37.45 3.33
445 446 6.816134 AATGTATGACATGCAAGTTACACA 57.184 33.333 10.39 4.78 37.97 3.72
446 447 9.225201 CAATAATGTATGACATGCAAGTTACAC 57.775 33.333 10.39 0.00 37.97 2.90
447 448 7.914871 GCAATAATGTATGACATGCAAGTTACA 59.085 33.333 10.39 8.57 37.97 2.41
448 449 8.131100 AGCAATAATGTATGACATGCAAGTTAC 58.869 33.333 10.39 0.00 37.97 2.50
449 450 8.224389 AGCAATAATGTATGACATGCAAGTTA 57.776 30.769 10.39 6.23 37.97 2.24
450 451 7.067859 AGAGCAATAATGTATGACATGCAAGTT 59.932 33.333 10.39 4.21 37.97 2.66
451 452 6.544931 AGAGCAATAATGTATGACATGCAAGT 59.455 34.615 10.39 0.00 37.97 3.16
452 453 6.967135 AGAGCAATAATGTATGACATGCAAG 58.033 36.000 10.39 0.00 37.97 4.01
453 454 6.947644 AGAGCAATAATGTATGACATGCAA 57.052 33.333 10.39 0.00 37.97 4.08
454 455 7.498570 TGTTAGAGCAATAATGTATGACATGCA 59.501 33.333 8.75 8.75 37.97 3.96
455 456 7.800380 GTGTTAGAGCAATAATGTATGACATGC 59.200 37.037 0.00 0.00 37.97 4.06
456 457 9.049523 AGTGTTAGAGCAATAATGTATGACATG 57.950 33.333 0.00 0.00 37.97 3.21
457 458 9.618890 AAGTGTTAGAGCAATAATGTATGACAT 57.381 29.630 0.00 0.00 41.31 3.06
458 459 8.882736 CAAGTGTTAGAGCAATAATGTATGACA 58.117 33.333 0.00 0.00 0.00 3.58
459 460 9.098355 TCAAGTGTTAGAGCAATAATGTATGAC 57.902 33.333 0.00 0.00 0.00 3.06
460 461 9.836864 ATCAAGTGTTAGAGCAATAATGTATGA 57.163 29.630 0.00 0.00 0.00 2.15
462 463 9.836864 TGATCAAGTGTTAGAGCAATAATGTAT 57.163 29.630 0.00 0.00 0.00 2.29
463 464 9.665719 TTGATCAAGTGTTAGAGCAATAATGTA 57.334 29.630 3.38 0.00 35.48 2.29
464 465 8.565896 TTGATCAAGTGTTAGAGCAATAATGT 57.434 30.769 3.38 0.00 35.48 2.71
465 466 9.499585 CTTTGATCAAGTGTTAGAGCAATAATG 57.500 33.333 8.41 0.00 39.53 1.90
466 467 9.236006 ACTTTGATCAAGTGTTAGAGCAATAAT 57.764 29.630 8.41 0.00 44.70 1.28
467 468 8.621532 ACTTTGATCAAGTGTTAGAGCAATAA 57.378 30.769 8.41 0.00 44.70 1.40
468 469 8.621532 AACTTTGATCAAGTGTTAGAGCAATA 57.378 30.769 20.22 0.00 45.77 1.90
469 470 7.516198 AACTTTGATCAAGTGTTAGAGCAAT 57.484 32.000 20.22 2.45 45.77 3.56
470 471 6.942532 AACTTTGATCAAGTGTTAGAGCAA 57.057 33.333 20.22 0.00 45.77 3.91
471 472 6.147821 GCTAACTTTGATCAAGTGTTAGAGCA 59.852 38.462 35.93 20.24 45.77 4.26
472 473 6.402658 GGCTAACTTTGATCAAGTGTTAGAGC 60.403 42.308 35.93 30.29 45.77 4.09
473 474 6.876257 AGGCTAACTTTGATCAAGTGTTAGAG 59.124 38.462 35.93 26.10 45.77 2.43
474 475 6.769512 AGGCTAACTTTGATCAAGTGTTAGA 58.230 36.000 35.93 21.12 45.77 2.10
475 476 6.183360 CGAGGCTAACTTTGATCAAGTGTTAG 60.183 42.308 32.23 32.23 45.77 2.34
476 477 5.637810 CGAGGCTAACTTTGATCAAGTGTTA 59.362 40.000 22.94 22.94 45.77 2.41
477 478 4.452455 CGAGGCTAACTTTGATCAAGTGTT 59.548 41.667 23.09 23.09 45.77 3.32
478 479 3.997021 CGAGGCTAACTTTGATCAAGTGT 59.003 43.478 8.41 9.04 45.77 3.55
479 480 4.245660 TCGAGGCTAACTTTGATCAAGTG 58.754 43.478 8.41 8.41 45.77 3.16
481 482 5.862924 TTTCGAGGCTAACTTTGATCAAG 57.137 39.130 8.41 5.87 38.64 3.02
482 483 6.038825 TGTTTTTCGAGGCTAACTTTGATCAA 59.961 34.615 3.38 3.38 0.00 2.57
483 484 5.529430 TGTTTTTCGAGGCTAACTTTGATCA 59.471 36.000 0.00 0.00 0.00 2.92
484 485 5.997385 TGTTTTTCGAGGCTAACTTTGATC 58.003 37.500 0.00 0.00 0.00 2.92
485 486 6.575162 ATGTTTTTCGAGGCTAACTTTGAT 57.425 33.333 0.00 0.00 0.00 2.57
486 487 7.681939 ATATGTTTTTCGAGGCTAACTTTGA 57.318 32.000 0.00 0.00 0.00 2.69
487 488 9.490663 CTAATATGTTTTTCGAGGCTAACTTTG 57.509 33.333 0.00 0.00 0.00 2.77
488 489 8.674607 CCTAATATGTTTTTCGAGGCTAACTTT 58.325 33.333 0.00 0.00 0.00 2.66
489 490 7.201705 GCCTAATATGTTTTTCGAGGCTAACTT 60.202 37.037 5.86 0.00 43.77 2.66
490 491 6.260271 GCCTAATATGTTTTTCGAGGCTAACT 59.740 38.462 5.86 0.00 43.77 2.24
491 492 6.037830 TGCCTAATATGTTTTTCGAGGCTAAC 59.962 38.462 12.48 0.00 46.59 2.34
492 493 6.116806 TGCCTAATATGTTTTTCGAGGCTAA 58.883 36.000 12.48 0.00 46.59 3.09
493 494 5.676552 TGCCTAATATGTTTTTCGAGGCTA 58.323 37.500 12.48 0.02 46.59 3.93
494 495 4.523083 TGCCTAATATGTTTTTCGAGGCT 58.477 39.130 12.48 0.00 46.59 4.58
495 496 4.893424 TGCCTAATATGTTTTTCGAGGC 57.107 40.909 6.10 6.10 46.63 4.70
509 510 8.888419 CCTCCATCCATCTATATAATGCCTAAT 58.112 37.037 0.00 0.00 0.00 1.73
510 511 7.293299 CCCTCCATCCATCTATATAATGCCTAA 59.707 40.741 0.00 0.00 0.00 2.69
511 512 6.789457 CCCTCCATCCATCTATATAATGCCTA 59.211 42.308 0.00 0.00 0.00 3.93
512 513 5.610132 CCCTCCATCCATCTATATAATGCCT 59.390 44.000 0.00 0.00 0.00 4.75
513 514 5.608437 TCCCTCCATCCATCTATATAATGCC 59.392 44.000 0.00 0.00 0.00 4.40
514 515 6.328672 ACTCCCTCCATCCATCTATATAATGC 59.671 42.308 0.00 0.00 0.00 3.56
515 516 7.927683 ACTCCCTCCATCCATCTATATAATG 57.072 40.000 0.00 0.00 0.00 1.90
516 517 9.836179 GATACTCCCTCCATCCATCTATATAAT 57.164 37.037 0.00 0.00 0.00 1.28
517 518 9.030611 AGATACTCCCTCCATCCATCTATATAA 57.969 37.037 0.00 0.00 0.00 0.98
518 519 8.603124 AGATACTCCCTCCATCCATCTATATA 57.397 38.462 0.00 0.00 0.00 0.86
519 520 7.493244 AGATACTCCCTCCATCCATCTATAT 57.507 40.000 0.00 0.00 0.00 0.86
520 521 6.934720 AGATACTCCCTCCATCCATCTATA 57.065 41.667 0.00 0.00 0.00 1.31
521 522 5.829858 AGATACTCCCTCCATCCATCTAT 57.170 43.478 0.00 0.00 0.00 1.98
522 523 6.736561 TTAGATACTCCCTCCATCCATCTA 57.263 41.667 0.00 0.00 0.00 1.98
523 524 5.623551 TTAGATACTCCCTCCATCCATCT 57.376 43.478 0.00 0.00 0.00 2.90
524 525 6.882768 AATTAGATACTCCCTCCATCCATC 57.117 41.667 0.00 0.00 0.00 3.51
525 526 7.295672 TGAAAATTAGATACTCCCTCCATCCAT 59.704 37.037 0.00 0.00 0.00 3.41
526 527 6.619437 TGAAAATTAGATACTCCCTCCATCCA 59.381 38.462 0.00 0.00 0.00 3.41
527 528 7.079451 TGAAAATTAGATACTCCCTCCATCC 57.921 40.000 0.00 0.00 0.00 3.51
567 568 8.297426 GGGAAAACTTTCGATCTCAATAAAACT 58.703 33.333 0.00 0.00 38.06 2.66
571 572 7.938140 ATGGGAAAACTTTCGATCTCAATAA 57.062 32.000 0.00 0.00 38.06 1.40
605 624 1.346365 CAAAGCGACTAGTTAGCGCA 58.654 50.000 24.04 0.00 44.87 6.09
606 625 0.645868 CCAAAGCGACTAGTTAGCGC 59.354 55.000 17.08 17.08 43.75 5.92
608 627 2.094130 ACTCCCAAAGCGACTAGTTAGC 60.094 50.000 14.19 14.19 0.00 3.09
609 628 3.731264 CGACTCCCAAAGCGACTAGTTAG 60.731 52.174 0.00 0.00 0.00 2.34
610 629 2.163010 CGACTCCCAAAGCGACTAGTTA 59.837 50.000 0.00 0.00 0.00 2.24
611 630 1.067776 CGACTCCCAAAGCGACTAGTT 60.068 52.381 0.00 0.00 0.00 2.24
613 632 0.526662 ACGACTCCCAAAGCGACTAG 59.473 55.000 0.00 0.00 0.00 2.57
621 1342 1.300620 CGCACAGACGACTCCCAAA 60.301 57.895 0.00 0.00 34.06 3.28
626 1347 1.205657 TTTTCACGCACAGACGACTC 58.794 50.000 0.00 0.00 36.70 3.36
665 1386 1.826720 TCTTTGCAGGGCCATCAATTC 59.173 47.619 6.18 0.00 0.00 2.17
671 1392 0.971386 CAAAGTCTTTGCAGGGCCAT 59.029 50.000 12.26 0.00 33.36 4.40
731 1452 5.163794 TGACTGGTTTCTTCGAAACTTCAAC 60.164 40.000 16.28 0.00 0.00 3.18
788 1509 6.070767 TCACAAAGGAGATTAGTAGGTTCCAG 60.071 42.308 0.00 0.00 0.00 3.86
821 1542 0.647410 CATTCGCTGTGATCGGTGTC 59.353 55.000 0.00 0.00 0.00 3.67
885 1610 5.566469 AGGAGATCCTCTAATTAGAGTCGG 58.434 45.833 31.26 21.69 44.77 4.79
902 1627 1.554160 CTGTGGAGCAACTGAGGAGAT 59.446 52.381 0.00 0.00 0.00 2.75
985 1710 2.825836 CATGGCCGGCTCCAACTC 60.826 66.667 28.56 8.18 39.96 3.01
1032 1757 2.442188 GGCGCTCTTGTACCGTTCG 61.442 63.158 7.64 0.00 0.00 3.95
1389 2114 2.811317 CCGTCGTGCTTCCTGCTC 60.811 66.667 0.00 0.00 43.37 4.26
1767 2492 3.889044 GAGATCGCGGCGACCAGA 61.889 66.667 28.88 4.98 39.18 3.86
1848 2573 3.450817 TCATCCGAATCAGCAGTTTCCTA 59.549 43.478 0.00 0.00 0.00 2.94
1923 2648 3.692406 GTCGCTTCCCTCCGTGGT 61.692 66.667 0.00 0.00 0.00 4.16
2024 2749 6.493115 ACATGAGTTGGATTTGTCCATTACAA 59.507 34.615 0.00 0.00 46.41 2.41
2025 2750 6.009589 ACATGAGTTGGATTTGTCCATTACA 58.990 36.000 0.00 0.33 39.86 2.41
2026 2751 6.515272 ACATGAGTTGGATTTGTCCATTAC 57.485 37.500 0.00 0.00 39.86 1.89
2051 2776 0.725784 CGTCGTCCATTGCAACTTGC 60.726 55.000 0.00 6.82 45.29 4.01
2282 3058 2.341176 GTTACTGACACGCGGGGT 59.659 61.111 15.46 9.82 0.00 4.95
2635 3512 4.322198 CCAAAAGCTATCAGTTGCCATGTT 60.322 41.667 0.00 0.00 0.00 2.71
2776 3659 2.105134 TGGCAACTCTCTTTTTACCCGA 59.895 45.455 0.00 0.00 37.61 5.14
2777 3660 2.500229 TGGCAACTCTCTTTTTACCCG 58.500 47.619 0.00 0.00 37.61 5.28
2970 3859 0.391263 GGTTTCTCTCCGCGGTCAAT 60.391 55.000 27.15 0.00 0.00 2.57
3068 3959 1.486439 CAACGCCTTTTGCACGAATT 58.514 45.000 0.24 0.00 41.33 2.17
3189 4623 0.605319 TGCCGGCAAGAATCGTTTCT 60.605 50.000 30.74 2.83 44.20 2.52
3223 4663 4.567959 GCTTTGTTTGATTGTTTCAGTGCT 59.432 37.500 0.00 0.00 35.27 4.40
3224 4664 4.567959 AGCTTTGTTTGATTGTTTCAGTGC 59.432 37.500 0.00 0.00 35.27 4.40
3227 4667 5.461078 CCAGAGCTTTGTTTGATTGTTTCAG 59.539 40.000 3.25 0.00 35.27 3.02
3245 4685 0.528684 GCGATACAGTCACCCAGAGC 60.529 60.000 0.00 0.00 0.00 4.09
3296 5227 4.359706 CTGGTACTTGAAGCAAACCAAAC 58.640 43.478 13.45 0.00 34.94 2.93
3415 5346 4.522405 TGACAATCGATTTGGAAACCACAT 59.478 37.500 8.21 0.00 39.80 3.21
3680 5611 4.097361 GGGAAGAGCGGGTGGTCC 62.097 72.222 0.00 0.00 43.71 4.46
4123 6061 5.868801 ACAAATTCCGCTCAAATTAATGGTG 59.131 36.000 0.00 0.00 0.00 4.17
4161 6099 1.031571 TGAGCCGGCCATGAACATTC 61.032 55.000 26.15 11.49 0.00 2.67
4181 6119 2.613696 ATGCACACCCTGCCCCTA 60.614 61.111 0.00 0.00 46.51 3.53
4182 6120 4.371417 CATGCACACCCTGCCCCT 62.371 66.667 0.00 0.00 46.51 4.79
4183 6121 4.684134 ACATGCACACCCTGCCCC 62.684 66.667 0.00 0.00 46.51 5.80
4184 6122 3.376078 CACATGCACACCCTGCCC 61.376 66.667 0.00 0.00 46.51 5.36
4185 6123 2.598394 ACACATGCACACCCTGCC 60.598 61.111 0.00 0.00 46.51 4.85
4196 6134 3.013921 ACCCCTATAAAACGCACACATG 58.986 45.455 0.00 0.00 0.00 3.21
4197 6135 3.013921 CACCCCTATAAAACGCACACAT 58.986 45.455 0.00 0.00 0.00 3.21
4198 6136 2.038689 TCACCCCTATAAAACGCACACA 59.961 45.455 0.00 0.00 0.00 3.72
4199 6137 2.676342 CTCACCCCTATAAAACGCACAC 59.324 50.000 0.00 0.00 0.00 3.82
4200 6138 2.303600 ACTCACCCCTATAAAACGCACA 59.696 45.455 0.00 0.00 0.00 4.57
4201 6139 2.676342 CACTCACCCCTATAAAACGCAC 59.324 50.000 0.00 0.00 0.00 5.34
4202 6140 2.303600 ACACTCACCCCTATAAAACGCA 59.696 45.455 0.00 0.00 0.00 5.24
4203 6141 2.981898 ACACTCACCCCTATAAAACGC 58.018 47.619 0.00 0.00 0.00 4.84
4204 6142 5.522460 CACATACACTCACCCCTATAAAACG 59.478 44.000 0.00 0.00 0.00 3.60
4205 6143 5.296035 GCACATACACTCACCCCTATAAAAC 59.704 44.000 0.00 0.00 0.00 2.43
4206 6144 5.433526 GCACATACACTCACCCCTATAAAA 58.566 41.667 0.00 0.00 0.00 1.52
4207 6145 4.442332 CGCACATACACTCACCCCTATAAA 60.442 45.833 0.00 0.00 0.00 1.40
4208 6146 3.069016 CGCACATACACTCACCCCTATAA 59.931 47.826 0.00 0.00 0.00 0.98
4209 6147 2.626266 CGCACATACACTCACCCCTATA 59.374 50.000 0.00 0.00 0.00 1.31
4210 6148 1.412710 CGCACATACACTCACCCCTAT 59.587 52.381 0.00 0.00 0.00 2.57
4211 6149 0.821517 CGCACATACACTCACCCCTA 59.178 55.000 0.00 0.00 0.00 3.53
4212 6150 1.192146 ACGCACATACACTCACCCCT 61.192 55.000 0.00 0.00 0.00 4.79
4213 6151 0.533491 TACGCACATACACTCACCCC 59.467 55.000 0.00 0.00 0.00 4.95
4214 6152 2.596904 ATACGCACATACACTCACCC 57.403 50.000 0.00 0.00 0.00 4.61
4215 6153 6.617879 TCATATATACGCACATACACTCACC 58.382 40.000 0.00 0.00 0.00 4.02
4216 6154 6.251589 GCTCATATATACGCACATACACTCAC 59.748 42.308 1.66 0.00 0.00 3.51
4217 6155 6.322491 GCTCATATATACGCACATACACTCA 58.678 40.000 1.66 0.00 0.00 3.41
4218 6156 5.452623 CGCTCATATATACGCACATACACTC 59.547 44.000 6.32 0.00 0.00 3.51
4219 6157 5.106277 ACGCTCATATATACGCACATACACT 60.106 40.000 6.32 0.00 0.00 3.55
4220 6158 5.003496 CACGCTCATATATACGCACATACAC 59.997 44.000 6.32 0.00 0.00 2.90
4221 6159 5.092781 CACGCTCATATATACGCACATACA 58.907 41.667 6.32 0.00 0.00 2.29
4222 6160 5.093457 ACACGCTCATATATACGCACATAC 58.907 41.667 6.32 0.00 0.00 2.39
4223 6161 5.106475 TGACACGCTCATATATACGCACATA 60.106 40.000 6.32 0.00 0.00 2.29
4224 6162 4.166523 GACACGCTCATATATACGCACAT 58.833 43.478 6.32 0.00 0.00 3.21
4225 6163 3.003897 TGACACGCTCATATATACGCACA 59.996 43.478 6.32 0.00 0.00 4.57
4226 6164 3.561503 TGACACGCTCATATATACGCAC 58.438 45.455 6.32 0.00 0.00 5.34
4227 6165 3.907894 TGACACGCTCATATATACGCA 57.092 42.857 6.32 0.00 0.00 5.24
4228 6166 3.057739 CGTTGACACGCTCATATATACGC 59.942 47.826 2.81 0.03 40.18 4.42
4229 6167 4.784147 CGTTGACACGCTCATATATACG 57.216 45.455 1.63 1.63 40.18 3.06
4313 6251 3.827898 GGGTCGCCTGACTCGAGG 61.828 72.222 18.41 0.00 44.83 4.63
4378 6316 2.589014 GTCGTCCGTTACTTGTAGTGG 58.411 52.381 0.00 0.00 0.00 4.00
4451 6395 2.229203 GGGTTCGGGGAAGGAAGGT 61.229 63.158 0.00 0.00 0.00 3.50
4452 6396 0.619543 TAGGGTTCGGGGAAGGAAGG 60.620 60.000 0.00 0.00 0.00 3.46
4454 6398 0.117742 ACTAGGGTTCGGGGAAGGAA 59.882 55.000 0.00 0.00 0.00 3.36
4455 6399 0.117742 AACTAGGGTTCGGGGAAGGA 59.882 55.000 0.00 0.00 0.00 3.36
4475 6422 3.201290 CTCGAATGGAAGAACAGGGATG 58.799 50.000 0.00 0.00 0.00 3.51
4476 6423 2.420687 GCTCGAATGGAAGAACAGGGAT 60.421 50.000 0.00 0.00 0.00 3.85
4479 6426 2.099141 TGCTCGAATGGAAGAACAGG 57.901 50.000 0.00 0.00 0.00 4.00
4541 6516 5.011982 AGGTGGAGGGATCGATCTATTAA 57.988 43.478 23.96 6.02 0.00 1.40
4542 6517 4.676799 AGGTGGAGGGATCGATCTATTA 57.323 45.455 23.96 5.72 0.00 0.98
4543 6518 3.551635 AGGTGGAGGGATCGATCTATT 57.448 47.619 23.96 10.47 0.00 1.73
4557 6532 3.054139 CCAGATGAAAGGATCAAGGTGGA 60.054 47.826 0.00 0.00 42.54 4.02
4746 6751 1.241165 TCTTTGTCGCCGTAGACTGA 58.759 50.000 8.61 3.05 41.47 3.41
4909 6914 3.866582 GGGCCCTCGTGGATGGAG 61.867 72.222 17.04 0.00 35.39 3.86
4934 6939 1.582610 TTTGATCTGGAAACCGCCGC 61.583 55.000 0.00 0.00 0.00 6.53
4940 6945 1.173913 CCCCCGTTTGATCTGGAAAC 58.826 55.000 0.00 0.00 0.00 2.78
4996 7001 2.884976 TGGTCGTACCATTAGCCGA 58.115 52.632 3.02 0.00 44.79 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.