Multiple sequence alignment - TraesCS3D01G221400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G221400 chr3D 100.000 3925 0 0 1 3925 301851087 301847163 0.000000e+00 7249.0
1 TraesCS3D01G221400 chr3D 93.464 306 20 0 1531 1836 32905305 32905000 4.620000e-124 455.0
2 TraesCS3D01G221400 chr3D 74.879 621 132 22 2973 3578 115037591 115038202 1.080000e-65 261.0
3 TraesCS3D01G221400 chr3D 100.000 30 0 0 2163 2192 535576592 535576621 5.480000e-04 56.5
4 TraesCS3D01G221400 chr3A 91.892 1739 132 8 2195 3925 433409796 433411533 0.000000e+00 2422.0
5 TraesCS3D01G221400 chr3A 94.590 647 28 2 892 1531 433408886 433409532 0.000000e+00 994.0
6 TraesCS3D01G221400 chr3A 88.088 638 35 18 277 906 433408263 433408867 0.000000e+00 719.0
7 TraesCS3D01G221400 chr3A 87.234 282 23 7 1836 2117 433409530 433409798 3.810000e-80 309.0
8 TraesCS3D01G221400 chr3A 98.198 111 1 1 6 116 433405681 433405790 4.000000e-45 193.0
9 TraesCS3D01G221400 chr3A 93.939 99 6 0 112 210 433408166 433408264 2.440000e-32 150.0
10 TraesCS3D01G221400 chr3B 93.778 1543 66 8 1 1531 419119151 419120675 0.000000e+00 2290.0
11 TraesCS3D01G221400 chr3B 88.632 1645 129 28 2160 3764 419122598 419124224 0.000000e+00 1949.0
12 TraesCS3D01G221400 chr3B 75.580 647 128 22 2975 3615 498458545 498459167 3.840000e-75 292.0
13 TraesCS3D01G221400 chr7A 93.060 317 22 0 1520 1836 570272647 570272331 7.680000e-127 464.0
14 TraesCS3D01G221400 chr7A 93.060 317 22 0 1520 1836 570284272 570283956 7.680000e-127 464.0
15 TraesCS3D01G221400 chr7A 77.245 646 118 18 2975 3615 664639698 664639077 6.240000e-93 351.0
16 TraesCS3D01G221400 chr4A 93.548 310 20 0 1531 1840 27552378 27552687 2.760000e-126 462.0
17 TraesCS3D01G221400 chr4D 93.528 309 20 0 1528 1836 486181402 486181710 9.940000e-126 460.0
18 TraesCS3D01G221400 chr4D 93.464 306 20 0 1531 1836 221433903 221433598 4.620000e-124 455.0
19 TraesCS3D01G221400 chr2D 93.791 306 19 0 1531 1836 585641512 585641817 9.940000e-126 460.0
20 TraesCS3D01G221400 chr2D 100.000 33 0 0 2160 2192 650856249 650856281 1.180000e-05 62.1
21 TraesCS3D01G221400 chr1D 93.791 306 19 0 1531 1836 9858622 9858927 9.940000e-126 460.0
22 TraesCS3D01G221400 chr1D 93.506 308 20 0 1530 1837 372525990 372526297 3.570000e-125 459.0
23 TraesCS3D01G221400 chr2A 78.516 647 115 12 2975 3614 765573867 765574496 1.700000e-108 403.0
24 TraesCS3D01G221400 chr2A 78.281 640 118 14 2975 3611 66767198 66767819 3.680000e-105 392.0
25 TraesCS3D01G221400 chr2A 96.875 32 1 0 2160 2191 502834524 502834555 2.000000e-03 54.7
26 TraesCS3D01G221400 chr6B 77.830 636 120 15 2983 3614 518677311 518676693 1.330000e-99 374.0
27 TraesCS3D01G221400 chr7D 77.519 645 125 8 2975 3614 136414919 136414290 1.720000e-98 370.0
28 TraesCS3D01G221400 chr7D 94.286 35 2 0 2166 2200 13489292 13489258 2.000000e-03 54.7
29 TraesCS3D01G221400 chr4B 77.077 650 129 13 2983 3628 16800416 16799783 1.340000e-94 357.0
30 TraesCS3D01G221400 chr4B 95.122 41 2 0 2160 2200 657304320 657304280 9.100000e-07 65.8
31 TraesCS3D01G221400 chr1A 77.668 609 116 13 2975 3579 93369007 93368415 1.730000e-93 353.0
32 TraesCS3D01G221400 chr7B 83.003 353 58 2 3244 3594 108270464 108270112 6.330000e-83 318.0
33 TraesCS3D01G221400 chr5D 82.548 361 62 1 3242 3601 10902929 10903289 2.280000e-82 316.0
34 TraesCS3D01G221400 chr5D 76.161 646 126 20 2975 3616 424913564 424912943 8.190000e-82 315.0
35 TraesCS3D01G221400 chr5B 76.183 655 123 22 2975 3624 712433478 712432852 8.190000e-82 315.0
36 TraesCS3D01G221400 chr2B 73.922 464 99 13 2975 3433 26895988 26895542 2.430000e-37 167.0
37 TraesCS3D01G221400 chr6A 93.478 46 2 1 2160 2204 169891251 169891296 2.530000e-07 67.6
38 TraesCS3D01G221400 chr1B 100.000 36 0 0 1205 1240 7406641 7406676 2.530000e-07 67.6
39 TraesCS3D01G221400 chrUn 92.308 39 2 1 2160 2197 23661066 23661028 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G221400 chr3D 301847163 301851087 3924 True 7249.000000 7249 100.0000 1 3925 1 chr3D.!!$R2 3924
1 TraesCS3D01G221400 chr3D 115037591 115038202 611 False 261.000000 261 74.8790 2973 3578 1 chr3D.!!$F1 605
2 TraesCS3D01G221400 chr3A 433405681 433411533 5852 False 797.833333 2422 92.3235 6 3925 6 chr3A.!!$F1 3919
3 TraesCS3D01G221400 chr3B 419119151 419124224 5073 False 2119.500000 2290 91.2050 1 3764 2 chr3B.!!$F2 3763
4 TraesCS3D01G221400 chr3B 498458545 498459167 622 False 292.000000 292 75.5800 2975 3615 1 chr3B.!!$F1 640
5 TraesCS3D01G221400 chr7A 664639077 664639698 621 True 351.000000 351 77.2450 2975 3615 1 chr7A.!!$R3 640
6 TraesCS3D01G221400 chr2A 765573867 765574496 629 False 403.000000 403 78.5160 2975 3614 1 chr2A.!!$F3 639
7 TraesCS3D01G221400 chr2A 66767198 66767819 621 False 392.000000 392 78.2810 2975 3611 1 chr2A.!!$F1 636
8 TraesCS3D01G221400 chr6B 518676693 518677311 618 True 374.000000 374 77.8300 2983 3614 1 chr6B.!!$R1 631
9 TraesCS3D01G221400 chr7D 136414290 136414919 629 True 370.000000 370 77.5190 2975 3614 1 chr7D.!!$R2 639
10 TraesCS3D01G221400 chr4B 16799783 16800416 633 True 357.000000 357 77.0770 2983 3628 1 chr4B.!!$R1 645
11 TraesCS3D01G221400 chr1A 93368415 93369007 592 True 353.000000 353 77.6680 2975 3579 1 chr1A.!!$R1 604
12 TraesCS3D01G221400 chr5D 424912943 424913564 621 True 315.000000 315 76.1610 2975 3616 1 chr5D.!!$R1 641
13 TraesCS3D01G221400 chr5B 712432852 712433478 626 True 315.000000 315 76.1830 2975 3624 1 chr5B.!!$R1 649

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
826 3213 0.03779 GTGAGTGACCAGAGTGGCTC 60.038 60.0 0.0 0.0 42.67 4.70 F
1200 3629 1.01891 GCAAACACAACCAGGTACGT 58.981 50.0 0.0 0.0 0.00 3.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1755 4189 0.106066 TGGCATGTCCATTGGATCCC 60.106 55.0 9.9 7.65 40.72 3.85 R
2933 7018 1.237285 AACAATGCAGCGAGGACACC 61.237 55.0 0.0 0.00 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 0.105555 ATCTGAGAGCAGGAGGAGGG 60.106 60.000 0.00 0.00 42.53 4.30
348 2729 1.645455 CCATGCTCCGCGAATCTTG 59.355 57.895 8.23 4.11 0.00 3.02
446 2833 3.938637 GAAGAAAGGTGGGCGGGGG 62.939 68.421 0.00 0.00 0.00 5.40
610 2997 7.620094 ACGAAGGATATTAATATGGGAGCTAGT 59.380 37.037 12.74 0.95 0.00 2.57
615 3002 8.417884 GGATATTAATATGGGAGCTAGTGTCTC 58.582 40.741 12.74 0.00 0.00 3.36
656 3043 1.759445 ACACCTCGGGATCAGATGAAG 59.241 52.381 0.00 0.00 0.00 3.02
669 3056 6.238320 GGATCAGATGAAGAAATTCAGGAACG 60.238 42.308 0.00 0.00 34.02 3.95
670 3057 5.793817 TCAGATGAAGAAATTCAGGAACGA 58.206 37.500 0.00 0.00 34.02 3.85
671 3058 5.639506 TCAGATGAAGAAATTCAGGAACGAC 59.360 40.000 0.00 0.00 34.02 4.34
693 3080 4.651994 CATTTCGAAATGGAAGACGAAGG 58.348 43.478 33.59 11.38 43.54 3.46
694 3081 3.671008 TTCGAAATGGAAGACGAAGGA 57.329 42.857 0.00 0.00 39.27 3.36
697 3084 2.668457 CGAAATGGAAGACGAAGGAGTG 59.332 50.000 0.00 0.00 0.00 3.51
718 3105 1.446907 ATTGCGCAGAAGAGGTTGAG 58.553 50.000 11.31 0.00 0.00 3.02
742 3129 1.646912 TAACTGAATCCCGTGGTGGA 58.353 50.000 0.00 0.00 42.00 4.02
764 3151 2.607635 CACACATATTGTAGCACGACCC 59.392 50.000 0.00 0.00 35.67 4.46
824 3211 0.601311 GTGTGAGTGACCAGAGTGGC 60.601 60.000 0.00 0.00 42.67 5.01
826 3213 0.037790 GTGAGTGACCAGAGTGGCTC 60.038 60.000 0.00 0.00 42.67 4.70
827 3214 1.214062 GAGTGACCAGAGTGGCTCG 59.786 63.158 0.00 0.00 42.67 5.03
828 3215 1.528292 GAGTGACCAGAGTGGCTCGT 61.528 60.000 0.00 0.00 42.67 4.18
829 3216 1.080434 GTGACCAGAGTGGCTCGTC 60.080 63.158 0.00 0.00 42.67 4.20
914 3338 9.567776 TCCTCACTAATCTTGTTTGAAATACAA 57.432 29.630 0.00 0.00 36.65 2.41
991 3415 3.053455 GTGGAACTGTTGAGAAGAGTCG 58.947 50.000 0.00 0.00 33.33 4.18
1002 3426 1.273886 AGAAGAGTCGAGAAAGCCACC 59.726 52.381 0.00 0.00 0.00 4.61
1033 3457 3.065306 CCTTCCACGGCACTACCA 58.935 61.111 0.00 0.00 39.03 3.25
1034 3458 1.375523 CCTTCCACGGCACTACCAC 60.376 63.158 0.00 0.00 39.03 4.16
1118 3547 2.132996 AGCTGCCCTCTCAGATCCG 61.133 63.158 0.00 0.00 36.19 4.18
1124 3553 3.531207 CTCTCAGATCCGCGGCCA 61.531 66.667 23.51 4.04 0.00 5.36
1172 3601 1.218316 CAAGGTCACGGGCTACTCC 59.782 63.158 0.00 0.00 0.00 3.85
1200 3629 1.018910 GCAAACACAACCAGGTACGT 58.981 50.000 0.00 0.00 0.00 3.57
1304 3733 4.871993 AGTTCTGAATGATTCGATGTGC 57.128 40.909 0.18 0.00 0.00 4.57
1349 3778 3.684305 CCGATGTGTCTCTTTTGTATGCA 59.316 43.478 0.00 0.00 0.00 3.96
1428 3857 2.216898 AGCACACTTCTCTCTGCAAAC 58.783 47.619 0.00 0.00 31.71 2.93
1469 3903 2.807045 GTGCCGTCGAGTGAGCAG 60.807 66.667 0.00 0.00 35.56 4.24
1495 3929 4.384318 GGAGGGAACATCCTAGAAGTTTCC 60.384 50.000 9.85 9.85 38.69 3.13
1499 3933 5.163290 GGGAACATCCTAGAAGTTTCCCTAG 60.163 48.000 18.17 0.00 34.04 3.02
1503 3937 6.023603 ACATCCTAGAAGTTTCCCTAGTGAA 58.976 40.000 0.00 0.00 32.54 3.18
1531 3965 5.407995 TGTGTTTTTGTTTTGAAAGGCTGAG 59.592 36.000 0.00 0.00 0.00 3.35
1532 3966 4.934602 TGTTTTTGTTTTGAAAGGCTGAGG 59.065 37.500 0.00 0.00 0.00 3.86
1533 3967 3.817709 TTTGTTTTGAAAGGCTGAGGG 57.182 42.857 0.00 0.00 0.00 4.30
1534 3968 2.452600 TGTTTTGAAAGGCTGAGGGT 57.547 45.000 0.00 0.00 0.00 4.34
1535 3969 2.306847 TGTTTTGAAAGGCTGAGGGTC 58.693 47.619 0.00 0.00 0.00 4.46
1536 3970 2.091885 TGTTTTGAAAGGCTGAGGGTCT 60.092 45.455 0.00 0.00 0.00 3.85
1537 3971 2.554462 GTTTTGAAAGGCTGAGGGTCTC 59.446 50.000 0.00 0.00 0.00 3.36
1538 3972 1.734655 TTGAAAGGCTGAGGGTCTCT 58.265 50.000 0.00 0.00 0.00 3.10
1539 3973 1.734655 TGAAAGGCTGAGGGTCTCTT 58.265 50.000 0.00 0.00 0.00 2.85
1540 3974 2.057922 TGAAAGGCTGAGGGTCTCTTT 58.942 47.619 0.00 0.00 0.00 2.52
1541 3975 2.224621 TGAAAGGCTGAGGGTCTCTTTG 60.225 50.000 0.00 0.00 0.00 2.77
1542 3976 1.734655 AAGGCTGAGGGTCTCTTTGA 58.265 50.000 0.00 0.00 0.00 2.69
1543 3977 1.963985 AGGCTGAGGGTCTCTTTGAT 58.036 50.000 0.00 0.00 0.00 2.57
1544 3978 2.273619 AGGCTGAGGGTCTCTTTGATT 58.726 47.619 0.00 0.00 0.00 2.57
1545 3979 2.238395 AGGCTGAGGGTCTCTTTGATTC 59.762 50.000 0.00 0.00 0.00 2.52
1546 3980 2.026822 GGCTGAGGGTCTCTTTGATTCA 60.027 50.000 0.00 0.00 0.00 2.57
1547 3981 3.560025 GGCTGAGGGTCTCTTTGATTCAA 60.560 47.826 0.00 0.00 0.00 2.69
1548 3982 4.074970 GCTGAGGGTCTCTTTGATTCAAA 58.925 43.478 11.19 11.19 0.00 2.69
1565 3999 9.705103 TTGATTCAAAGGATTTTCATAGGATCT 57.295 29.630 0.00 0.00 35.03 2.75
1566 4000 9.705103 TGATTCAAAGGATTTTCATAGGATCTT 57.295 29.630 0.00 0.00 35.03 2.40
1600 4034 7.535489 AGAATCCTTACGAAATTTTCCTACG 57.465 36.000 3.61 0.00 0.00 3.51
1601 4035 7.101700 AGAATCCTTACGAAATTTTCCTACGT 58.898 34.615 7.01 7.01 40.23 3.57
1602 4036 7.605309 AGAATCCTTACGAAATTTTCCTACGTT 59.395 33.333 7.11 0.00 38.18 3.99
1603 4037 6.470557 TCCTTACGAAATTTTCCTACGTTG 57.529 37.500 7.11 0.00 38.18 4.10
1604 4038 5.409214 TCCTTACGAAATTTTCCTACGTTGG 59.591 40.000 10.01 10.01 38.18 3.77
1605 4039 5.179929 CCTTACGAAATTTTCCTACGTTGGT 59.820 40.000 15.74 0.00 38.18 3.67
1606 4040 4.737353 ACGAAATTTTCCTACGTTGGTC 57.263 40.909 15.74 4.18 33.48 4.02
1607 4041 3.184986 ACGAAATTTTCCTACGTTGGTCG 59.815 43.478 15.74 17.05 46.00 4.79
1619 4053 3.348795 CGTTGGTCGTTTGATTCGTAG 57.651 47.619 0.00 0.00 34.52 3.51
1620 4054 2.091588 CGTTGGTCGTTTGATTCGTAGG 59.908 50.000 0.00 0.00 34.52 3.18
1621 4055 3.319755 GTTGGTCGTTTGATTCGTAGGA 58.680 45.455 0.00 0.00 0.00 2.94
1622 4056 3.880047 TGGTCGTTTGATTCGTAGGAT 57.120 42.857 0.00 0.00 0.00 3.24
1623 4057 4.196626 TGGTCGTTTGATTCGTAGGATT 57.803 40.909 0.00 0.00 0.00 3.01
1624 4058 3.930229 TGGTCGTTTGATTCGTAGGATTG 59.070 43.478 0.00 0.00 0.00 2.67
1625 4059 4.178540 GGTCGTTTGATTCGTAGGATTGA 58.821 43.478 0.00 0.00 0.00 2.57
1626 4060 4.628333 GGTCGTTTGATTCGTAGGATTGAA 59.372 41.667 0.00 0.00 0.00 2.69
1627 4061 5.293569 GGTCGTTTGATTCGTAGGATTGAAT 59.706 40.000 0.00 0.00 37.52 2.57
1628 4062 6.411652 GTCGTTTGATTCGTAGGATTGAATC 58.588 40.000 7.76 7.76 46.77 2.52
1629 4063 5.522460 TCGTTTGATTCGTAGGATTGAATCC 59.478 40.000 16.35 16.35 46.29 3.01
1668 4102 9.601810 TCCTAAGGATTCATATGTACTACATGT 57.398 33.333 11.39 2.69 39.53 3.21
1669 4103 9.862371 CCTAAGGATTCATATGTACTACATGTC 57.138 37.037 0.00 0.00 39.53 3.06
1672 4106 8.250143 AGGATTCATATGTACTACATGTCACA 57.750 34.615 0.00 5.94 39.53 3.58
1673 4107 8.363390 AGGATTCATATGTACTACATGTCACAG 58.637 37.037 0.00 0.00 39.53 3.66
1674 4108 7.600375 GGATTCATATGTACTACATGTCACAGG 59.400 40.741 0.00 0.00 39.53 4.00
1675 4109 7.654022 TTCATATGTACTACATGTCACAGGA 57.346 36.000 0.00 2.83 39.53 3.86
1676 4110 7.654022 TCATATGTACTACATGTCACAGGAA 57.346 36.000 0.00 0.00 39.53 3.36
1677 4111 8.250143 TCATATGTACTACATGTCACAGGAAT 57.750 34.615 0.00 0.00 39.53 3.01
1678 4112 8.704668 TCATATGTACTACATGTCACAGGAATT 58.295 33.333 0.00 0.00 39.53 2.17
1679 4113 8.982685 CATATGTACTACATGTCACAGGAATTC 58.017 37.037 0.00 0.00 39.53 2.17
1680 4114 6.605471 TGTACTACATGTCACAGGAATTCT 57.395 37.500 0.00 0.00 0.00 2.40
1681 4115 7.712204 TGTACTACATGTCACAGGAATTCTA 57.288 36.000 0.00 0.00 0.00 2.10
1682 4116 8.129496 TGTACTACATGTCACAGGAATTCTAA 57.871 34.615 0.00 0.00 0.00 2.10
1683 4117 8.033038 TGTACTACATGTCACAGGAATTCTAAC 58.967 37.037 0.00 0.00 0.00 2.34
1684 4118 7.004555 ACTACATGTCACAGGAATTCTAACA 57.995 36.000 0.00 3.81 0.00 2.41
1685 4119 7.624549 ACTACATGTCACAGGAATTCTAACAT 58.375 34.615 0.00 5.81 0.00 2.71
1686 4120 8.103305 ACTACATGTCACAGGAATTCTAACATT 58.897 33.333 0.00 3.60 0.00 2.71
1687 4121 7.383102 ACATGTCACAGGAATTCTAACATTC 57.617 36.000 5.23 0.00 33.04 2.67
1688 4122 6.942005 ACATGTCACAGGAATTCTAACATTCA 59.058 34.615 5.23 0.00 35.18 2.57
1689 4123 6.801539 TGTCACAGGAATTCTAACATTCAC 57.198 37.500 5.23 0.00 35.18 3.18
1690 4124 6.533730 TGTCACAGGAATTCTAACATTCACT 58.466 36.000 5.23 0.00 35.18 3.41
1691 4125 6.650807 TGTCACAGGAATTCTAACATTCACTC 59.349 38.462 5.23 0.00 35.18 3.51
1692 4126 6.092807 GTCACAGGAATTCTAACATTCACTCC 59.907 42.308 5.23 0.00 35.18 3.85
1693 4127 5.939883 CACAGGAATTCTAACATTCACTCCA 59.060 40.000 5.23 0.00 35.18 3.86
1694 4128 6.430925 CACAGGAATTCTAACATTCACTCCAA 59.569 38.462 5.23 0.00 35.18 3.53
1695 4129 6.431234 ACAGGAATTCTAACATTCACTCCAAC 59.569 38.462 5.23 0.00 35.18 3.77
1696 4130 5.946377 AGGAATTCTAACATTCACTCCAACC 59.054 40.000 5.23 0.00 35.18 3.77
1697 4131 5.946377 GGAATTCTAACATTCACTCCAACCT 59.054 40.000 5.23 0.00 35.18 3.50
1698 4132 6.094186 GGAATTCTAACATTCACTCCAACCTC 59.906 42.308 5.23 0.00 35.18 3.85
1699 4133 5.825593 TTCTAACATTCACTCCAACCTCT 57.174 39.130 0.00 0.00 0.00 3.69
1700 4134 5.825593 TCTAACATTCACTCCAACCTCTT 57.174 39.130 0.00 0.00 0.00 2.85
1701 4135 5.551233 TCTAACATTCACTCCAACCTCTTG 58.449 41.667 0.00 0.00 0.00 3.02
1702 4136 2.508526 ACATTCACTCCAACCTCTTGC 58.491 47.619 0.00 0.00 0.00 4.01
1703 4137 2.158623 ACATTCACTCCAACCTCTTGCA 60.159 45.455 0.00 0.00 0.00 4.08
1704 4138 2.727123 TTCACTCCAACCTCTTGCAA 57.273 45.000 0.00 0.00 0.00 4.08
1705 4139 2.260844 TCACTCCAACCTCTTGCAAG 57.739 50.000 20.81 20.81 0.00 4.01
1706 4140 1.768275 TCACTCCAACCTCTTGCAAGA 59.232 47.619 26.87 26.87 0.00 3.02
1707 4141 2.172505 TCACTCCAACCTCTTGCAAGAA 59.827 45.455 28.16 12.73 34.03 2.52
1708 4142 2.951642 CACTCCAACCTCTTGCAAGAAA 59.048 45.455 28.16 9.08 34.03 2.52
1709 4143 3.571401 CACTCCAACCTCTTGCAAGAAAT 59.429 43.478 28.16 17.01 34.03 2.17
1710 4144 3.823304 ACTCCAACCTCTTGCAAGAAATC 59.177 43.478 28.16 0.00 34.03 2.17
1711 4145 3.157087 TCCAACCTCTTGCAAGAAATCC 58.843 45.455 28.16 0.00 34.03 3.01
1712 4146 3.160269 CCAACCTCTTGCAAGAAATCCT 58.840 45.455 28.16 9.94 34.03 3.24
1713 4147 3.575687 CCAACCTCTTGCAAGAAATCCTT 59.424 43.478 28.16 12.74 34.03 3.36
1714 4148 4.039609 CCAACCTCTTGCAAGAAATCCTTT 59.960 41.667 28.16 12.73 34.03 3.11
1715 4149 5.243730 CCAACCTCTTGCAAGAAATCCTTTA 59.756 40.000 28.16 4.65 34.03 1.85
1716 4150 6.071165 CCAACCTCTTGCAAGAAATCCTTTAT 60.071 38.462 28.16 6.29 34.03 1.40
1717 4151 7.381323 CAACCTCTTGCAAGAAATCCTTTATT 58.619 34.615 28.16 10.24 34.03 1.40
1718 4152 7.544804 ACCTCTTGCAAGAAATCCTTTATTT 57.455 32.000 28.16 1.25 40.59 1.40
1719 4153 7.966812 ACCTCTTGCAAGAAATCCTTTATTTT 58.033 30.769 28.16 0.06 37.93 1.82
1720 4154 8.432013 ACCTCTTGCAAGAAATCCTTTATTTTT 58.568 29.630 28.16 0.00 37.93 1.94
1721 4155 8.929746 CCTCTTGCAAGAAATCCTTTATTTTTC 58.070 33.333 28.16 0.00 37.93 2.29
1722 4156 8.831715 TCTTGCAAGAAATCCTTTATTTTTCC 57.168 30.769 26.61 0.00 37.93 3.13
1723 4157 7.877612 TCTTGCAAGAAATCCTTTATTTTTCCC 59.122 33.333 26.61 0.00 37.93 3.97
1724 4158 6.162777 TGCAAGAAATCCTTTATTTTTCCCG 58.837 36.000 0.00 0.00 37.93 5.14
1725 4159 6.163476 GCAAGAAATCCTTTATTTTTCCCGT 58.837 36.000 0.00 0.00 37.93 5.28
1726 4160 6.090763 GCAAGAAATCCTTTATTTTTCCCGTG 59.909 38.462 0.00 0.00 37.93 4.94
1727 4161 7.375053 CAAGAAATCCTTTATTTTTCCCGTGA 58.625 34.615 0.00 0.00 37.93 4.35
1728 4162 6.920817 AGAAATCCTTTATTTTTCCCGTGAC 58.079 36.000 0.00 0.00 37.93 3.67
1729 4163 6.492087 AGAAATCCTTTATTTTTCCCGTGACA 59.508 34.615 0.00 0.00 37.93 3.58
1730 4164 5.638596 ATCCTTTATTTTTCCCGTGACAC 57.361 39.130 0.00 0.00 0.00 3.67
1731 4165 4.462133 TCCTTTATTTTTCCCGTGACACA 58.538 39.130 6.37 0.00 0.00 3.72
1732 4166 4.888239 TCCTTTATTTTTCCCGTGACACAA 59.112 37.500 6.37 0.00 0.00 3.33
1733 4167 5.536916 TCCTTTATTTTTCCCGTGACACAAT 59.463 36.000 6.37 0.00 0.00 2.71
1734 4168 5.861787 CCTTTATTTTTCCCGTGACACAATC 59.138 40.000 6.37 0.00 0.00 2.67
1735 4169 6.392625 TTTATTTTTCCCGTGACACAATCA 57.607 33.333 6.37 0.00 33.79 2.57
1736 4170 4.927978 ATTTTTCCCGTGACACAATCAA 57.072 36.364 6.37 0.00 39.72 2.57
1737 4171 4.720649 TTTTTCCCGTGACACAATCAAA 57.279 36.364 6.37 0.00 39.72 2.69
1738 4172 3.701532 TTTCCCGTGACACAATCAAAC 57.298 42.857 6.37 0.00 39.72 2.93
1739 4173 2.333688 TCCCGTGACACAATCAAACA 57.666 45.000 6.37 0.00 39.72 2.83
1740 4174 2.644676 TCCCGTGACACAATCAAACAA 58.355 42.857 6.37 0.00 39.72 2.83
1741 4175 3.017442 TCCCGTGACACAATCAAACAAA 58.983 40.909 6.37 0.00 39.72 2.83
1742 4176 3.112580 CCCGTGACACAATCAAACAAAC 58.887 45.455 6.37 0.00 39.72 2.93
1743 4177 3.181491 CCCGTGACACAATCAAACAAACT 60.181 43.478 6.37 0.00 39.72 2.66
1744 4178 4.035017 CCGTGACACAATCAAACAAACTC 58.965 43.478 6.37 0.00 39.72 3.01
1745 4179 4.438065 CCGTGACACAATCAAACAAACTCA 60.438 41.667 6.37 0.00 39.72 3.41
1746 4180 5.092105 CGTGACACAATCAAACAAACTCAA 58.908 37.500 6.37 0.00 39.72 3.02
1747 4181 5.570973 CGTGACACAATCAAACAAACTCAAA 59.429 36.000 6.37 0.00 39.72 2.69
1748 4182 6.253298 CGTGACACAATCAAACAAACTCAAAT 59.747 34.615 6.37 0.00 39.72 2.32
1749 4183 7.201427 CGTGACACAATCAAACAAACTCAAATT 60.201 33.333 6.37 0.00 39.72 1.82
1750 4184 8.110002 GTGACACAATCAAACAAACTCAAATTC 58.890 33.333 0.00 0.00 39.72 2.17
1751 4185 8.034215 TGACACAATCAAACAAACTCAAATTCT 58.966 29.630 0.00 0.00 33.02 2.40
1752 4186 9.515020 GACACAATCAAACAAACTCAAATTCTA 57.485 29.630 0.00 0.00 0.00 2.10
1758 4192 9.753674 ATCAAACAAACTCAAATTCTATAGGGA 57.246 29.630 0.00 0.00 0.00 4.20
1759 4193 9.753674 TCAAACAAACTCAAATTCTATAGGGAT 57.246 29.630 0.00 0.00 0.00 3.85
1761 4195 8.753497 AACAAACTCAAATTCTATAGGGATCC 57.247 34.615 1.92 1.92 0.00 3.36
1762 4196 7.872138 ACAAACTCAAATTCTATAGGGATCCA 58.128 34.615 15.23 0.00 0.00 3.41
1763 4197 8.336235 ACAAACTCAAATTCTATAGGGATCCAA 58.664 33.333 15.23 0.51 0.00 3.53
1764 4198 9.359653 CAAACTCAAATTCTATAGGGATCCAAT 57.640 33.333 15.23 9.04 0.00 3.16
1765 4199 8.930846 AACTCAAATTCTATAGGGATCCAATG 57.069 34.615 15.23 0.00 0.00 2.82
1766 4200 7.465116 ACTCAAATTCTATAGGGATCCAATGG 58.535 38.462 15.23 8.62 0.00 3.16
1767 4201 7.295672 ACTCAAATTCTATAGGGATCCAATGGA 59.704 37.037 15.23 3.67 35.55 3.41
1768 4202 7.461749 TCAAATTCTATAGGGATCCAATGGAC 58.538 38.462 15.23 0.00 32.98 4.02
1769 4203 7.073598 TCAAATTCTATAGGGATCCAATGGACA 59.926 37.037 15.23 5.77 32.98 4.02
1770 4204 7.594849 AATTCTATAGGGATCCAATGGACAT 57.405 36.000 15.23 7.53 32.98 3.06
1771 4205 6.378661 TTCTATAGGGATCCAATGGACATG 57.621 41.667 15.23 0.00 32.98 3.21
1772 4206 2.957402 TAGGGATCCAATGGACATGC 57.043 50.000 15.23 0.00 32.98 4.06
1773 4207 0.186873 AGGGATCCAATGGACATGCC 59.813 55.000 15.23 4.48 32.98 4.40
1784 4218 3.104519 TGGACATGCCATTTCAATCCT 57.895 42.857 4.93 0.00 43.33 3.24
1785 4219 4.248174 TGGACATGCCATTTCAATCCTA 57.752 40.909 4.93 0.00 43.33 2.94
1786 4220 3.953612 TGGACATGCCATTTCAATCCTAC 59.046 43.478 4.93 0.00 43.33 3.18
1787 4221 3.003689 GGACATGCCATTTCAATCCTACG 59.996 47.826 0.00 0.00 36.34 3.51
1788 4222 2.951642 ACATGCCATTTCAATCCTACGG 59.048 45.455 0.00 0.00 0.00 4.02
1789 4223 2.799126 TGCCATTTCAATCCTACGGT 57.201 45.000 0.00 0.00 0.00 4.83
1790 4224 3.080300 TGCCATTTCAATCCTACGGTT 57.920 42.857 0.00 0.00 0.00 4.44
1791 4225 3.426615 TGCCATTTCAATCCTACGGTTT 58.573 40.909 0.00 0.00 0.00 3.27
1792 4226 3.442273 TGCCATTTCAATCCTACGGTTTC 59.558 43.478 0.00 0.00 0.00 2.78
1793 4227 3.181490 GCCATTTCAATCCTACGGTTTCC 60.181 47.826 0.00 0.00 0.00 3.13
1794 4228 3.380320 CCATTTCAATCCTACGGTTTCCC 59.620 47.826 0.00 0.00 0.00 3.97
1795 4229 4.270008 CATTTCAATCCTACGGTTTCCCT 58.730 43.478 0.00 0.00 0.00 4.20
1796 4230 5.433526 CATTTCAATCCTACGGTTTCCCTA 58.566 41.667 0.00 0.00 0.00 3.53
1797 4231 5.703730 TTTCAATCCTACGGTTTCCCTAT 57.296 39.130 0.00 0.00 0.00 2.57
1798 4232 5.703730 TTCAATCCTACGGTTTCCCTATT 57.296 39.130 0.00 0.00 0.00 1.73
1799 4233 5.286267 TCAATCCTACGGTTTCCCTATTC 57.714 43.478 0.00 0.00 0.00 1.75
1800 4234 4.102054 TCAATCCTACGGTTTCCCTATTCC 59.898 45.833 0.00 0.00 0.00 3.01
1801 4235 3.409804 TCCTACGGTTTCCCTATTCCT 57.590 47.619 0.00 0.00 0.00 3.36
1802 4236 3.036091 TCCTACGGTTTCCCTATTCCTG 58.964 50.000 0.00 0.00 0.00 3.86
1803 4237 2.770232 CCTACGGTTTCCCTATTCCTGT 59.230 50.000 0.00 0.00 0.00 4.00
1804 4238 2.781681 ACGGTTTCCCTATTCCTGTG 57.218 50.000 0.00 0.00 0.00 3.66
1805 4239 1.982958 ACGGTTTCCCTATTCCTGTGT 59.017 47.619 0.00 0.00 0.00 3.72
1806 4240 2.374170 ACGGTTTCCCTATTCCTGTGTT 59.626 45.455 0.00 0.00 0.00 3.32
1807 4241 3.181437 ACGGTTTCCCTATTCCTGTGTTT 60.181 43.478 0.00 0.00 0.00 2.83
1808 4242 3.824443 CGGTTTCCCTATTCCTGTGTTTT 59.176 43.478 0.00 0.00 0.00 2.43
1809 4243 4.279922 CGGTTTCCCTATTCCTGTGTTTTT 59.720 41.667 0.00 0.00 0.00 1.94
1810 4244 5.538118 GGTTTCCCTATTCCTGTGTTTTTG 58.462 41.667 0.00 0.00 0.00 2.44
1811 4245 4.864704 TTCCCTATTCCTGTGTTTTTGC 57.135 40.909 0.00 0.00 0.00 3.68
1812 4246 3.838565 TCCCTATTCCTGTGTTTTTGCA 58.161 40.909 0.00 0.00 0.00 4.08
1813 4247 4.219115 TCCCTATTCCTGTGTTTTTGCAA 58.781 39.130 0.00 0.00 0.00 4.08
1814 4248 4.837860 TCCCTATTCCTGTGTTTTTGCAAT 59.162 37.500 0.00 0.00 0.00 3.56
1815 4249 5.047377 TCCCTATTCCTGTGTTTTTGCAATC 60.047 40.000 0.00 0.00 0.00 2.67
1816 4250 5.170748 CCTATTCCTGTGTTTTTGCAATCC 58.829 41.667 0.00 0.00 0.00 3.01
1817 4251 4.961438 ATTCCTGTGTTTTTGCAATCCT 57.039 36.364 0.00 0.00 0.00 3.24
1818 4252 6.152661 CCTATTCCTGTGTTTTTGCAATCCTA 59.847 38.462 0.00 0.00 0.00 2.94
1819 4253 6.610075 ATTCCTGTGTTTTTGCAATCCTAT 57.390 33.333 0.00 0.00 0.00 2.57
1820 4254 5.389859 TCCTGTGTTTTTGCAATCCTATG 57.610 39.130 0.00 0.00 0.00 2.23
1821 4255 5.076182 TCCTGTGTTTTTGCAATCCTATGA 58.924 37.500 0.00 0.00 0.00 2.15
1822 4256 5.538053 TCCTGTGTTTTTGCAATCCTATGAA 59.462 36.000 0.00 0.00 0.00 2.57
1823 4257 6.211184 TCCTGTGTTTTTGCAATCCTATGAAT 59.789 34.615 0.00 0.00 0.00 2.57
1824 4258 6.532657 CCTGTGTTTTTGCAATCCTATGAATC 59.467 38.462 0.00 0.00 0.00 2.52
1825 4259 6.092092 TGTGTTTTTGCAATCCTATGAATCG 58.908 36.000 0.00 0.00 0.00 3.34
1826 4260 6.072230 TGTGTTTTTGCAATCCTATGAATCGA 60.072 34.615 0.00 0.00 0.00 3.59
1827 4261 6.806249 GTGTTTTTGCAATCCTATGAATCGAA 59.194 34.615 0.00 0.00 0.00 3.71
1828 4262 7.008628 GTGTTTTTGCAATCCTATGAATCGAAG 59.991 37.037 0.00 0.00 0.00 3.79
1829 4263 7.094420 TGTTTTTGCAATCCTATGAATCGAAGA 60.094 33.333 0.00 0.00 45.75 2.87
1830 4264 6.609237 TTTGCAATCCTATGAATCGAAGAG 57.391 37.500 0.00 0.00 43.63 2.85
1831 4265 4.635223 TGCAATCCTATGAATCGAAGAGG 58.365 43.478 0.00 0.00 43.63 3.69
1832 4266 3.434984 GCAATCCTATGAATCGAAGAGGC 59.565 47.826 0.00 0.00 43.63 4.70
1833 4267 3.971245 ATCCTATGAATCGAAGAGGCC 57.029 47.619 0.00 0.00 43.63 5.19
1834 4268 1.971357 TCCTATGAATCGAAGAGGCCC 59.029 52.381 0.00 0.00 43.63 5.80
1835 4269 1.974236 CCTATGAATCGAAGAGGCCCT 59.026 52.381 0.00 0.00 43.63 5.19
1836 4270 2.289320 CCTATGAATCGAAGAGGCCCTG 60.289 54.545 0.00 0.00 43.63 4.45
1837 4271 0.471617 ATGAATCGAAGAGGCCCTGG 59.528 55.000 0.00 0.00 43.63 4.45
1856 4290 4.162320 CCTGGATGAGTAGCTTGGTAAGAA 59.838 45.833 0.00 0.00 0.00 2.52
1882 5541 5.723295 TGTAAATCCTGTACGTACTTTCCC 58.277 41.667 25.12 12.02 0.00 3.97
1901 5560 1.415659 CCTATTGGTCCTCCAGCAGAG 59.584 57.143 0.00 0.00 45.22 3.35
1917 5576 2.943265 AGCCCCAGCCAACATCCT 60.943 61.111 0.00 0.00 41.25 3.24
1920 5579 1.037579 GCCCCAGCCAACATCCTTAC 61.038 60.000 0.00 0.00 0.00 2.34
1933 5592 6.037940 CCAACATCCTTACATCTTCACTCATG 59.962 42.308 0.00 0.00 0.00 3.07
1942 5601 3.317603 TCTTCACTCATGCGATGTTCA 57.682 42.857 0.00 0.00 0.00 3.18
1943 5602 3.256558 TCTTCACTCATGCGATGTTCAG 58.743 45.455 0.00 0.00 0.00 3.02
1944 5603 2.749280 TCACTCATGCGATGTTCAGT 57.251 45.000 0.00 0.00 0.00 3.41
1945 5604 3.866883 TCACTCATGCGATGTTCAGTA 57.133 42.857 0.00 0.00 0.00 2.74
1946 5605 3.774066 TCACTCATGCGATGTTCAGTAG 58.226 45.455 0.00 0.00 0.00 2.57
1947 5606 3.443681 TCACTCATGCGATGTTCAGTAGA 59.556 43.478 0.00 0.00 0.00 2.59
1948 5607 3.795639 CACTCATGCGATGTTCAGTAGAG 59.204 47.826 0.00 0.00 0.00 2.43
1974 5633 5.331876 AGAGAAACTTCTAGGATGTTCCG 57.668 43.478 0.00 0.00 38.60 4.30
1982 5641 1.754803 CTAGGATGTTCCGTGGCACTA 59.245 52.381 16.72 0.21 42.75 2.74
1995 5654 7.822161 TCCGTGGCACTACTTATAAGTTATA 57.178 36.000 22.66 5.00 40.37 0.98
1996 5655 8.236585 TCCGTGGCACTACTTATAAGTTATAA 57.763 34.615 22.66 13.45 40.37 0.98
1997 5656 8.694540 TCCGTGGCACTACTTATAAGTTATAAA 58.305 33.333 22.66 4.27 40.37 1.40
1998 5657 9.485206 CCGTGGCACTACTTATAAGTTATAAAT 57.515 33.333 22.66 8.85 40.37 1.40
2103 6030 7.414873 CCATGACGCTTAGTTGAAGTACTACTA 60.415 40.741 0.00 0.00 37.49 1.82
2148 6076 8.801882 ATTCCGTCCAAAATAAGTATCTCAAA 57.198 30.769 0.00 0.00 0.00 2.69
2234 6281 8.423349 CAAATGTATGGTGGGTATTCATTTGAT 58.577 33.333 17.57 0.00 45.74 2.57
2235 6282 8.551682 AATGTATGGTGGGTATTCATTTGATT 57.448 30.769 0.00 0.00 0.00 2.57
2331 6403 7.110155 AGACAGTTCTGTCCACTTTTTAGAAA 58.890 34.615 23.73 0.00 39.50 2.52
2368 6440 5.293079 AGAGCATCAAAACTTCGATTCTAGC 59.707 40.000 0.00 0.00 37.82 3.42
2378 6450 3.454371 TCGATTCTAGCCCTGCTTTAC 57.546 47.619 0.00 0.00 40.44 2.01
2399 6471 8.922058 TTTACCTCTACGTGAATTGATAAGAC 57.078 34.615 0.00 0.00 0.00 3.01
2401 6473 4.441415 CCTCTACGTGAATTGATAAGACGC 59.559 45.833 0.00 0.00 33.34 5.19
2448 6521 2.163211 GACTGAAGCCATTTCCTCTTGC 59.837 50.000 0.00 0.00 34.77 4.01
2661 6738 1.604308 CCTGGTGGCTGAACATGCA 60.604 57.895 0.00 0.00 0.00 3.96
2793 6870 1.872952 TCTGTGGCGAACTTGTTGATG 59.127 47.619 0.00 0.00 0.00 3.07
2933 7018 3.436700 ACCTTGCAAAAGAACTTTCCG 57.563 42.857 0.00 0.00 31.45 4.30
2970 7055 4.044336 TGTTTTTCATGCCTCTGTTGTG 57.956 40.909 0.00 0.00 0.00 3.33
3030 7119 7.878036 TCAATCATGGCAGTATAATGAACATG 58.122 34.615 21.93 21.93 37.92 3.21
3074 7167 9.793252 CATTCAGATCCTTAAACCATTTTGTAG 57.207 33.333 0.00 0.00 0.00 2.74
3144 7237 4.504916 CTCGCCGGAGCCAGACAG 62.505 72.222 5.05 0.00 32.61 3.51
3153 7246 2.288825 CGGAGCCAGACAGAACTTGTTA 60.289 50.000 0.00 0.00 41.05 2.41
3179 7273 6.978338 AGTAGACAGTTGAAAAGTCGTCATA 58.022 36.000 0.00 0.00 37.36 2.15
3185 7279 5.692204 CAGTTGAAAAGTCGTCATACTCAGT 59.308 40.000 0.00 0.00 0.00 3.41
3200 7295 7.233757 GTCATACTCAGTCCCCATAGAATTAGT 59.766 40.741 0.00 0.00 0.00 2.24
3232 7327 3.631250 ACAACAACCACCAATGAAGAGT 58.369 40.909 0.00 0.00 0.00 3.24
3233 7328 4.787551 ACAACAACCACCAATGAAGAGTA 58.212 39.130 0.00 0.00 0.00 2.59
3234 7329 4.821805 ACAACAACCACCAATGAAGAGTAG 59.178 41.667 0.00 0.00 0.00 2.57
3235 7330 4.021102 ACAACCACCAATGAAGAGTAGG 57.979 45.455 0.00 0.00 0.00 3.18
3236 7331 3.394606 ACAACCACCAATGAAGAGTAGGT 59.605 43.478 0.00 0.00 0.00 3.08
3237 7332 4.595781 ACAACCACCAATGAAGAGTAGGTA 59.404 41.667 0.00 0.00 0.00 3.08
3238 7333 5.178797 CAACCACCAATGAAGAGTAGGTAG 58.821 45.833 0.00 0.00 0.00 3.18
3239 7334 4.684724 ACCACCAATGAAGAGTAGGTAGA 58.315 43.478 0.00 0.00 0.00 2.59
3240 7335 5.281314 ACCACCAATGAAGAGTAGGTAGAT 58.719 41.667 0.00 0.00 0.00 1.98
3241 7336 5.726793 ACCACCAATGAAGAGTAGGTAGATT 59.273 40.000 0.00 0.00 0.00 2.40
3242 7337 6.051717 CCACCAATGAAGAGTAGGTAGATTG 58.948 44.000 0.00 0.00 0.00 2.67
3243 7338 6.127054 CCACCAATGAAGAGTAGGTAGATTGA 60.127 42.308 0.00 0.00 0.00 2.57
3244 7339 7.331026 CACCAATGAAGAGTAGGTAGATTGAA 58.669 38.462 0.00 0.00 0.00 2.69
3245 7340 7.824289 CACCAATGAAGAGTAGGTAGATTGAAA 59.176 37.037 0.00 0.00 0.00 2.69
3246 7341 8.383175 ACCAATGAAGAGTAGGTAGATTGAAAA 58.617 33.333 0.00 0.00 0.00 2.29
3247 7342 8.887717 CCAATGAAGAGTAGGTAGATTGAAAAG 58.112 37.037 0.00 0.00 0.00 2.27
3308 7420 8.073768 ACTAACATAAACGAACAATGACCAAAG 58.926 33.333 0.00 0.00 0.00 2.77
3359 7493 1.227556 GACACACCTTCACACGCCT 60.228 57.895 0.00 0.00 0.00 5.52
3421 7556 3.495100 CGGGGAGAACCTTATTCCATCTG 60.495 52.174 0.00 0.00 40.03 2.90
3725 7861 7.923344 CGATAGACATGGAGTTGATCTAGTTTT 59.077 37.037 0.00 0.00 39.76 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 8.542953 GGCATGATTCTCCGATTTTTAAATTTC 58.457 33.333 0.00 0.00 0.00 2.17
446 2833 2.027625 CACGTCCTCTTCGGGCAAC 61.028 63.158 0.00 0.00 37.17 4.17
610 2997 1.015109 GTCCGCTGATCTACGAGACA 58.985 55.000 9.15 0.00 32.97 3.41
615 3002 0.179145 AAACGGTCCGCTGATCTACG 60.179 55.000 12.28 0.00 0.00 3.51
669 3056 4.921470 TCGTCTTCCATTTCGAAATGTC 57.079 40.909 36.20 23.36 43.24 3.06
670 3057 4.154195 CCTTCGTCTTCCATTTCGAAATGT 59.846 41.667 36.20 13.30 43.24 2.71
671 3058 4.391830 TCCTTCGTCTTCCATTTCGAAATG 59.608 41.667 34.03 34.03 44.12 2.32
685 3072 1.736032 GCGCAATACACTCCTTCGTCT 60.736 52.381 0.30 0.00 0.00 4.18
686 3073 0.645868 GCGCAATACACTCCTTCGTC 59.354 55.000 0.30 0.00 0.00 4.20
687 3074 0.037697 TGCGCAATACACTCCTTCGT 60.038 50.000 8.16 0.00 0.00 3.85
688 3075 0.647410 CTGCGCAATACACTCCTTCG 59.353 55.000 13.05 0.00 0.00 3.79
689 3076 2.010145 TCTGCGCAATACACTCCTTC 57.990 50.000 13.05 0.00 0.00 3.46
690 3077 2.028112 TCTTCTGCGCAATACACTCCTT 60.028 45.455 13.05 0.00 0.00 3.36
691 3078 1.550524 TCTTCTGCGCAATACACTCCT 59.449 47.619 13.05 0.00 0.00 3.69
692 3079 1.929836 CTCTTCTGCGCAATACACTCC 59.070 52.381 13.05 0.00 0.00 3.85
693 3080 1.929836 CCTCTTCTGCGCAATACACTC 59.070 52.381 13.05 0.00 0.00 3.51
694 3081 1.276421 ACCTCTTCTGCGCAATACACT 59.724 47.619 13.05 0.00 0.00 3.55
697 3084 2.346803 TCAACCTCTTCTGCGCAATAC 58.653 47.619 13.05 0.00 0.00 1.89
718 3105 2.280628 CCACGGGATTCAGTTAAGCTC 58.719 52.381 0.00 0.00 0.00 4.09
742 3129 3.259064 GGTCGTGCTACAATATGTGTGT 58.741 45.455 0.00 0.00 41.89 3.72
749 3136 0.101759 GCGAGGGTCGTGCTACAATA 59.898 55.000 0.00 0.00 42.81 1.90
824 3211 4.504916 CTGCTGGAGGCCGACGAG 62.505 72.222 0.00 3.75 40.92 4.18
914 3338 6.186957 TGACAAATAAGACCCTGCATTACAT 58.813 36.000 0.00 0.00 0.00 2.29
991 3415 1.021920 GCTTCCTCGGTGGCTTTCTC 61.022 60.000 0.00 0.00 35.26 2.87
1002 3426 1.301677 GGAAGGCAAGTGCTTCCTCG 61.302 60.000 19.06 0.00 41.17 4.63
1032 3456 4.673298 TGGCGCGTACTGGTGGTG 62.673 66.667 8.43 0.00 0.00 4.17
1033 3457 4.373116 CTGGCGCGTACTGGTGGT 62.373 66.667 8.43 0.00 0.00 4.16
1118 3547 1.005630 CTAGCAGGAGTATGGCCGC 60.006 63.158 0.00 0.00 0.00 6.53
1124 3553 2.037772 CGGCCATTTCTAGCAGGAGTAT 59.962 50.000 2.24 0.00 0.00 2.12
1172 3601 1.398595 GTTGTGTTTGCAGCTAAGCG 58.601 50.000 0.00 0.00 37.31 4.68
1200 3629 9.352784 CGCAAAAATGATTCCTTAAATTCAGTA 57.647 29.630 0.00 0.00 0.00 2.74
1318 3747 5.703978 AAGAGACACATCGGATCTATCAG 57.296 43.478 0.00 0.00 0.00 2.90
1349 3778 2.475466 CGGCAGCCAATCAAGCGAT 61.475 57.895 13.30 0.00 34.64 4.58
1428 3857 5.450274 CGCTACTCATATCCCTGATCTGATG 60.450 48.000 0.38 0.00 27.76 3.07
1469 3903 2.777459 TCTAGGATGTTCCCTCCCTC 57.223 55.000 0.00 0.00 37.19 4.30
1495 3929 6.391227 AACAAAAACACAGGATTCACTAGG 57.609 37.500 0.00 0.00 0.00 3.02
1499 3933 6.959671 TCAAAACAAAAACACAGGATTCAC 57.040 33.333 0.00 0.00 0.00 3.18
1503 3937 5.353956 GCCTTTCAAAACAAAAACACAGGAT 59.646 36.000 0.00 0.00 0.00 3.24
1539 3973 9.705103 AGATCCTATGAAAATCCTTTGAATCAA 57.295 29.630 0.00 0.00 0.00 2.57
1540 3974 9.705103 AAGATCCTATGAAAATCCTTTGAATCA 57.295 29.630 0.00 0.00 0.00 2.57
1574 4008 9.090692 CGTAGGAAAATTTCGTAAGGATTCTAA 57.909 33.333 9.36 0.00 32.49 2.10
1575 4009 8.253113 ACGTAGGAAAATTTCGTAAGGATTCTA 58.747 33.333 19.53 3.49 35.04 2.10
1576 4010 7.101700 ACGTAGGAAAATTTCGTAAGGATTCT 58.898 34.615 19.53 4.26 35.04 2.40
1577 4011 7.299787 ACGTAGGAAAATTTCGTAAGGATTC 57.700 36.000 19.53 4.66 35.04 2.52
1578 4012 7.361457 CCAACGTAGGAAAATTTCGTAAGGATT 60.361 37.037 19.53 8.13 35.04 3.01
1579 4013 6.093082 CCAACGTAGGAAAATTTCGTAAGGAT 59.907 38.462 19.53 9.67 35.04 3.24
1580 4014 5.409214 CCAACGTAGGAAAATTTCGTAAGGA 59.591 40.000 19.53 0.00 35.04 3.36
1581 4015 5.179929 ACCAACGTAGGAAAATTTCGTAAGG 59.820 40.000 19.53 15.52 35.04 2.69
1582 4016 6.232139 ACCAACGTAGGAAAATTTCGTAAG 57.768 37.500 15.85 15.85 36.21 2.34
1583 4017 5.107530 CGACCAACGTAGGAAAATTTCGTAA 60.108 40.000 9.36 0.00 37.22 3.18
1584 4018 4.385447 CGACCAACGTAGGAAAATTTCGTA 59.615 41.667 4.26 4.26 37.22 3.43
1585 4019 3.184986 CGACCAACGTAGGAAAATTTCGT 59.815 43.478 6.19 6.19 37.22 3.85
1586 4020 3.728600 CGACCAACGTAGGAAAATTTCG 58.271 45.455 0.00 0.00 37.22 3.46
1600 4034 3.319755 TCCTACGAATCAAACGACCAAC 58.680 45.455 0.00 0.00 34.70 3.77
1601 4035 3.663995 TCCTACGAATCAAACGACCAA 57.336 42.857 0.00 0.00 34.70 3.67
1602 4036 3.880047 ATCCTACGAATCAAACGACCA 57.120 42.857 0.00 0.00 34.70 4.02
1603 4037 4.178540 TCAATCCTACGAATCAAACGACC 58.821 43.478 0.00 0.00 34.70 4.79
1604 4038 5.773239 TTCAATCCTACGAATCAAACGAC 57.227 39.130 0.00 0.00 34.70 4.34
1605 4039 5.522460 GGATTCAATCCTACGAATCAAACGA 59.478 40.000 9.43 0.00 46.12 3.85
1606 4040 5.738370 GGATTCAATCCTACGAATCAAACG 58.262 41.667 9.43 0.00 46.12 3.60
1642 4076 9.601810 ACATGTAGTACATATGAATCCTTAGGA 57.398 33.333 15.38 2.37 36.53 2.94
1643 4077 9.862371 GACATGTAGTACATATGAATCCTTAGG 57.138 37.037 15.38 0.00 36.53 2.69
1646 4080 8.704668 TGTGACATGTAGTACATATGAATCCTT 58.295 33.333 15.38 0.00 36.53 3.36
1647 4081 8.250143 TGTGACATGTAGTACATATGAATCCT 57.750 34.615 15.38 1.96 36.53 3.24
1648 4082 7.600375 CCTGTGACATGTAGTACATATGAATCC 59.400 40.741 15.38 1.97 36.53 3.01
1649 4083 8.360390 TCCTGTGACATGTAGTACATATGAATC 58.640 37.037 15.38 8.92 36.53 2.52
1650 4084 8.250143 TCCTGTGACATGTAGTACATATGAAT 57.750 34.615 15.38 0.00 36.53 2.57
1651 4085 7.654022 TCCTGTGACATGTAGTACATATGAA 57.346 36.000 15.38 0.00 36.53 2.57
1652 4086 7.654022 TTCCTGTGACATGTAGTACATATGA 57.346 36.000 15.38 0.00 36.53 2.15
1653 4087 8.893219 AATTCCTGTGACATGTAGTACATATG 57.107 34.615 15.38 8.73 36.53 1.78
1654 4088 8.928448 AGAATTCCTGTGACATGTAGTACATAT 58.072 33.333 15.38 4.39 36.53 1.78
1655 4089 8.306313 AGAATTCCTGTGACATGTAGTACATA 57.694 34.615 15.38 0.00 36.53 2.29
1656 4090 7.187824 AGAATTCCTGTGACATGTAGTACAT 57.812 36.000 10.10 10.10 39.91 2.29
1657 4091 6.605471 AGAATTCCTGTGACATGTAGTACA 57.395 37.500 5.24 5.24 0.00 2.90
1658 4092 8.033038 TGTTAGAATTCCTGTGACATGTAGTAC 58.967 37.037 0.00 0.00 0.00 2.73
1659 4093 8.129496 TGTTAGAATTCCTGTGACATGTAGTA 57.871 34.615 0.00 0.00 0.00 1.82
1660 4094 7.004555 TGTTAGAATTCCTGTGACATGTAGT 57.995 36.000 0.00 0.00 0.00 2.73
1661 4095 8.498054 AATGTTAGAATTCCTGTGACATGTAG 57.502 34.615 0.00 0.00 30.25 2.74
1662 4096 8.100164 TGAATGTTAGAATTCCTGTGACATGTA 58.900 33.333 0.00 0.00 35.98 2.29
1663 4097 6.942005 TGAATGTTAGAATTCCTGTGACATGT 59.058 34.615 0.00 0.00 35.98 3.21
1664 4098 7.120285 AGTGAATGTTAGAATTCCTGTGACATG 59.880 37.037 0.65 0.00 35.98 3.21
1665 4099 7.170965 AGTGAATGTTAGAATTCCTGTGACAT 58.829 34.615 0.65 0.01 35.98 3.06
1666 4100 6.533730 AGTGAATGTTAGAATTCCTGTGACA 58.466 36.000 0.65 0.00 35.98 3.58
1667 4101 6.092807 GGAGTGAATGTTAGAATTCCTGTGAC 59.907 42.308 0.65 0.00 35.98 3.67
1668 4102 6.173339 GGAGTGAATGTTAGAATTCCTGTGA 58.827 40.000 0.65 0.00 35.98 3.58
1669 4103 5.939883 TGGAGTGAATGTTAGAATTCCTGTG 59.060 40.000 0.65 0.00 35.98 3.66
1670 4104 6.126863 TGGAGTGAATGTTAGAATTCCTGT 57.873 37.500 0.65 0.00 35.98 4.00
1671 4105 6.127897 GGTTGGAGTGAATGTTAGAATTCCTG 60.128 42.308 0.65 0.00 35.98 3.86
1672 4106 5.946377 GGTTGGAGTGAATGTTAGAATTCCT 59.054 40.000 0.65 0.00 35.98 3.36
1673 4107 5.946377 AGGTTGGAGTGAATGTTAGAATTCC 59.054 40.000 0.65 0.00 35.98 3.01
1674 4108 6.881602 AGAGGTTGGAGTGAATGTTAGAATTC 59.118 38.462 0.00 0.00 37.13 2.17
1675 4109 6.784031 AGAGGTTGGAGTGAATGTTAGAATT 58.216 36.000 0.00 0.00 0.00 2.17
1676 4110 6.380079 AGAGGTTGGAGTGAATGTTAGAAT 57.620 37.500 0.00 0.00 0.00 2.40
1677 4111 5.825593 AGAGGTTGGAGTGAATGTTAGAA 57.174 39.130 0.00 0.00 0.00 2.10
1678 4112 5.551233 CAAGAGGTTGGAGTGAATGTTAGA 58.449 41.667 0.00 0.00 0.00 2.10
1679 4113 4.154918 GCAAGAGGTTGGAGTGAATGTTAG 59.845 45.833 0.00 0.00 33.87 2.34
1680 4114 4.072131 GCAAGAGGTTGGAGTGAATGTTA 58.928 43.478 0.00 0.00 33.87 2.41
1681 4115 2.887152 GCAAGAGGTTGGAGTGAATGTT 59.113 45.455 0.00 0.00 33.87 2.71
1682 4116 2.158623 TGCAAGAGGTTGGAGTGAATGT 60.159 45.455 0.00 0.00 33.87 2.71
1683 4117 2.507484 TGCAAGAGGTTGGAGTGAATG 58.493 47.619 0.00 0.00 33.87 2.67
1684 4118 2.957402 TGCAAGAGGTTGGAGTGAAT 57.043 45.000 0.00 0.00 33.87 2.57
1685 4119 2.172505 TCTTGCAAGAGGTTGGAGTGAA 59.827 45.455 25.16 0.00 35.16 3.18
1686 4120 1.768275 TCTTGCAAGAGGTTGGAGTGA 59.232 47.619 25.16 0.00 35.16 3.41
1687 4121 2.260844 TCTTGCAAGAGGTTGGAGTG 57.739 50.000 25.16 0.00 35.16 3.51
1688 4122 3.297134 TTTCTTGCAAGAGGTTGGAGT 57.703 42.857 27.02 0.00 35.16 3.85
1689 4123 3.192212 GGATTTCTTGCAAGAGGTTGGAG 59.808 47.826 27.02 0.00 35.16 3.86
1690 4124 3.157087 GGATTTCTTGCAAGAGGTTGGA 58.843 45.455 27.02 10.54 36.22 3.53
1691 4125 3.160269 AGGATTTCTTGCAAGAGGTTGG 58.840 45.455 27.02 1.05 36.22 3.77
1692 4126 4.861102 AAGGATTTCTTGCAAGAGGTTG 57.139 40.909 27.02 1.82 36.22 3.77
1693 4127 7.544804 AATAAAGGATTTCTTGCAAGAGGTT 57.455 32.000 27.02 16.57 40.09 3.50
1694 4128 7.544804 AAATAAAGGATTTCTTGCAAGAGGT 57.455 32.000 27.02 19.84 40.09 3.85
1695 4129 8.837788 AAAAATAAAGGATTTCTTGCAAGAGG 57.162 30.769 27.02 3.40 40.09 3.69
1696 4130 8.929746 GGAAAAATAAAGGATTTCTTGCAAGAG 58.070 33.333 27.02 3.94 40.09 2.85
1697 4131 7.877612 GGGAAAAATAAAGGATTTCTTGCAAGA 59.122 33.333 25.16 25.16 40.09 3.02
1698 4132 7.148590 CGGGAAAAATAAAGGATTTCTTGCAAG 60.149 37.037 20.81 20.81 40.09 4.01
1699 4133 6.648725 CGGGAAAAATAAAGGATTTCTTGCAA 59.351 34.615 0.00 0.00 40.09 4.08
1700 4134 6.162777 CGGGAAAAATAAAGGATTTCTTGCA 58.837 36.000 0.00 0.00 40.09 4.08
1701 4135 6.090763 CACGGGAAAAATAAAGGATTTCTTGC 59.909 38.462 0.00 0.00 40.09 4.01
1702 4136 7.328493 GTCACGGGAAAAATAAAGGATTTCTTG 59.672 37.037 0.00 0.00 40.09 3.02
1703 4137 7.014808 TGTCACGGGAAAAATAAAGGATTTCTT 59.985 33.333 0.00 0.00 40.09 2.52
1704 4138 6.492087 TGTCACGGGAAAAATAAAGGATTTCT 59.508 34.615 0.00 0.00 40.09 2.52
1705 4139 6.584942 GTGTCACGGGAAAAATAAAGGATTTC 59.415 38.462 0.00 0.00 40.09 2.17
1706 4140 6.041069 TGTGTCACGGGAAAAATAAAGGATTT 59.959 34.615 0.00 0.00 43.42 2.17
1707 4141 5.536916 TGTGTCACGGGAAAAATAAAGGATT 59.463 36.000 0.00 0.00 0.00 3.01
1708 4142 5.074115 TGTGTCACGGGAAAAATAAAGGAT 58.926 37.500 0.00 0.00 0.00 3.24
1709 4143 4.462133 TGTGTCACGGGAAAAATAAAGGA 58.538 39.130 0.00 0.00 0.00 3.36
1710 4144 4.839668 TGTGTCACGGGAAAAATAAAGG 57.160 40.909 0.00 0.00 0.00 3.11
1711 4145 6.442952 TGATTGTGTCACGGGAAAAATAAAG 58.557 36.000 0.00 0.00 0.00 1.85
1712 4146 6.392625 TGATTGTGTCACGGGAAAAATAAA 57.607 33.333 0.00 0.00 0.00 1.40
1713 4147 6.392625 TTGATTGTGTCACGGGAAAAATAA 57.607 33.333 0.00 0.00 36.32 1.40
1714 4148 6.183360 TGTTTGATTGTGTCACGGGAAAAATA 60.183 34.615 0.00 0.00 36.32 1.40
1715 4149 4.927978 TTGATTGTGTCACGGGAAAAAT 57.072 36.364 0.00 0.00 36.32 1.82
1716 4150 4.082190 TGTTTGATTGTGTCACGGGAAAAA 60.082 37.500 0.00 0.00 36.32 1.94
1717 4151 3.444034 TGTTTGATTGTGTCACGGGAAAA 59.556 39.130 0.00 0.00 36.32 2.29
1718 4152 3.017442 TGTTTGATTGTGTCACGGGAAA 58.983 40.909 0.00 0.00 36.32 3.13
1719 4153 2.644676 TGTTTGATTGTGTCACGGGAA 58.355 42.857 0.00 0.00 36.32 3.97
1720 4154 2.333688 TGTTTGATTGTGTCACGGGA 57.666 45.000 0.00 0.00 36.32 5.14
1721 4155 3.112580 GTTTGTTTGATTGTGTCACGGG 58.887 45.455 0.00 0.00 36.32 5.28
1722 4156 4.027572 AGTTTGTTTGATTGTGTCACGG 57.972 40.909 0.00 0.00 36.32 4.94
1723 4157 4.657055 TGAGTTTGTTTGATTGTGTCACG 58.343 39.130 0.00 0.00 36.32 4.35
1724 4158 6.942886 TTTGAGTTTGTTTGATTGTGTCAC 57.057 33.333 0.00 0.00 36.32 3.67
1725 4159 8.034215 AGAATTTGAGTTTGTTTGATTGTGTCA 58.966 29.630 0.00 0.00 34.25 3.58
1726 4160 8.411318 AGAATTTGAGTTTGTTTGATTGTGTC 57.589 30.769 0.00 0.00 0.00 3.67
1732 4166 9.753674 TCCCTATAGAATTTGAGTTTGTTTGAT 57.246 29.630 0.00 0.00 0.00 2.57
1733 4167 9.753674 ATCCCTATAGAATTTGAGTTTGTTTGA 57.246 29.630 0.00 0.00 0.00 2.69
1735 4169 9.190317 GGATCCCTATAGAATTTGAGTTTGTTT 57.810 33.333 0.00 0.00 0.00 2.83
1736 4170 8.336235 TGGATCCCTATAGAATTTGAGTTTGTT 58.664 33.333 9.90 0.00 0.00 2.83
1737 4171 7.872138 TGGATCCCTATAGAATTTGAGTTTGT 58.128 34.615 9.90 0.00 0.00 2.83
1738 4172 8.752005 TTGGATCCCTATAGAATTTGAGTTTG 57.248 34.615 9.90 0.00 0.00 2.93
1739 4173 9.359653 CATTGGATCCCTATAGAATTTGAGTTT 57.640 33.333 9.90 0.00 0.00 2.66
1740 4174 7.946776 CCATTGGATCCCTATAGAATTTGAGTT 59.053 37.037 9.90 0.00 0.00 3.01
1741 4175 7.295672 TCCATTGGATCCCTATAGAATTTGAGT 59.704 37.037 9.90 0.00 0.00 3.41
1742 4176 7.609532 GTCCATTGGATCCCTATAGAATTTGAG 59.390 40.741 9.90 0.00 32.73 3.02
1743 4177 7.073598 TGTCCATTGGATCCCTATAGAATTTGA 59.926 37.037 9.90 0.00 32.73 2.69
1744 4178 7.233632 TGTCCATTGGATCCCTATAGAATTTG 58.766 38.462 9.90 0.00 32.73 2.32
1745 4179 7.406620 TGTCCATTGGATCCCTATAGAATTT 57.593 36.000 9.90 0.00 32.73 1.82
1746 4180 7.408543 CATGTCCATTGGATCCCTATAGAATT 58.591 38.462 9.90 0.00 32.73 2.17
1747 4181 6.579849 GCATGTCCATTGGATCCCTATAGAAT 60.580 42.308 9.90 0.00 32.73 2.40
1748 4182 5.280676 GCATGTCCATTGGATCCCTATAGAA 60.281 44.000 9.90 0.00 32.73 2.10
1749 4183 4.225942 GCATGTCCATTGGATCCCTATAGA 59.774 45.833 9.90 0.00 32.73 1.98
1750 4184 4.521146 GCATGTCCATTGGATCCCTATAG 58.479 47.826 9.90 0.00 32.73 1.31
1751 4185 3.266772 GGCATGTCCATTGGATCCCTATA 59.733 47.826 9.90 0.00 32.73 1.31
1752 4186 2.042162 GGCATGTCCATTGGATCCCTAT 59.958 50.000 9.90 0.00 32.73 2.57
1753 4187 1.425066 GGCATGTCCATTGGATCCCTA 59.575 52.381 9.90 0.00 32.73 3.53
1754 4188 0.186873 GGCATGTCCATTGGATCCCT 59.813 55.000 9.90 0.00 32.73 4.20
1755 4189 0.106066 TGGCATGTCCATTGGATCCC 60.106 55.000 9.90 7.65 40.72 3.85
1756 4190 3.518766 TGGCATGTCCATTGGATCC 57.481 52.632 9.01 4.20 40.72 3.36
1765 4199 3.003689 CGTAGGATTGAAATGGCATGTCC 59.996 47.826 14.98 10.67 0.00 4.02
1766 4200 4.214980 CGTAGGATTGAAATGGCATGTC 57.785 45.455 10.86 10.86 0.00 3.06
1788 4222 4.988540 GCAAAAACACAGGAATAGGGAAAC 59.011 41.667 0.00 0.00 0.00 2.78
1789 4223 4.651503 TGCAAAAACACAGGAATAGGGAAA 59.348 37.500 0.00 0.00 0.00 3.13
1790 4224 4.219115 TGCAAAAACACAGGAATAGGGAA 58.781 39.130 0.00 0.00 0.00 3.97
1791 4225 3.838565 TGCAAAAACACAGGAATAGGGA 58.161 40.909 0.00 0.00 0.00 4.20
1792 4226 4.599047 TTGCAAAAACACAGGAATAGGG 57.401 40.909 0.00 0.00 0.00 3.53
1793 4227 5.047092 AGGATTGCAAAAACACAGGAATAGG 60.047 40.000 1.71 0.00 0.00 2.57
1794 4228 6.029346 AGGATTGCAAAAACACAGGAATAG 57.971 37.500 1.71 0.00 0.00 1.73
1795 4229 7.395772 TCATAGGATTGCAAAAACACAGGAATA 59.604 33.333 1.71 0.00 0.00 1.75
1796 4230 4.961438 AGGATTGCAAAAACACAGGAAT 57.039 36.364 1.71 0.00 0.00 3.01
1797 4231 5.538053 TCATAGGATTGCAAAAACACAGGAA 59.462 36.000 1.71 0.00 0.00 3.36
1798 4232 5.076182 TCATAGGATTGCAAAAACACAGGA 58.924 37.500 1.71 0.00 0.00 3.86
1799 4233 5.389859 TCATAGGATTGCAAAAACACAGG 57.610 39.130 1.71 0.00 0.00 4.00
1800 4234 6.252015 CGATTCATAGGATTGCAAAAACACAG 59.748 38.462 1.71 0.00 0.00 3.66
1801 4235 6.072230 TCGATTCATAGGATTGCAAAAACACA 60.072 34.615 1.71 0.00 0.00 3.72
1802 4236 6.321717 TCGATTCATAGGATTGCAAAAACAC 58.678 36.000 1.71 0.00 0.00 3.32
1803 4237 6.507958 TCGATTCATAGGATTGCAAAAACA 57.492 33.333 1.71 0.00 0.00 2.83
1804 4238 7.250569 TCTTCGATTCATAGGATTGCAAAAAC 58.749 34.615 1.71 0.00 0.00 2.43
1805 4239 7.389803 TCTTCGATTCATAGGATTGCAAAAA 57.610 32.000 1.71 0.00 0.00 1.94
1806 4240 6.038603 CCTCTTCGATTCATAGGATTGCAAAA 59.961 38.462 1.71 0.00 0.00 2.44
1807 4241 5.528690 CCTCTTCGATTCATAGGATTGCAAA 59.471 40.000 1.71 0.00 0.00 3.68
1808 4242 5.059161 CCTCTTCGATTCATAGGATTGCAA 58.941 41.667 0.00 0.00 0.00 4.08
1809 4243 4.635223 CCTCTTCGATTCATAGGATTGCA 58.365 43.478 0.00 0.00 0.00 4.08
1810 4244 3.434984 GCCTCTTCGATTCATAGGATTGC 59.565 47.826 0.00 0.00 0.00 3.56
1811 4245 3.999663 GGCCTCTTCGATTCATAGGATTG 59.000 47.826 0.00 0.00 0.00 2.67
1812 4246 3.008485 GGGCCTCTTCGATTCATAGGATT 59.992 47.826 0.84 0.00 0.00 3.01
1813 4247 2.569404 GGGCCTCTTCGATTCATAGGAT 59.431 50.000 0.84 0.00 0.00 3.24
1814 4248 1.971357 GGGCCTCTTCGATTCATAGGA 59.029 52.381 0.84 0.00 0.00 2.94
1815 4249 1.974236 AGGGCCTCTTCGATTCATAGG 59.026 52.381 0.00 0.00 0.00 2.57
1816 4250 2.289320 CCAGGGCCTCTTCGATTCATAG 60.289 54.545 0.95 0.00 0.00 2.23
1817 4251 1.694150 CCAGGGCCTCTTCGATTCATA 59.306 52.381 0.95 0.00 0.00 2.15
1818 4252 0.471617 CCAGGGCCTCTTCGATTCAT 59.528 55.000 0.95 0.00 0.00 2.57
1819 4253 0.617535 TCCAGGGCCTCTTCGATTCA 60.618 55.000 0.95 0.00 0.00 2.57
1820 4254 0.761802 ATCCAGGGCCTCTTCGATTC 59.238 55.000 0.95 0.00 0.00 2.52
1821 4255 0.471617 CATCCAGGGCCTCTTCGATT 59.528 55.000 0.95 0.00 0.00 3.34
1822 4256 0.399091 TCATCCAGGGCCTCTTCGAT 60.399 55.000 0.95 0.00 0.00 3.59
1823 4257 1.001631 TCATCCAGGGCCTCTTCGA 59.998 57.895 0.95 0.00 0.00 3.71
1824 4258 1.333636 ACTCATCCAGGGCCTCTTCG 61.334 60.000 0.95 0.00 0.00 3.79
1825 4259 1.691434 CTACTCATCCAGGGCCTCTTC 59.309 57.143 0.95 0.00 0.00 2.87
1826 4260 1.799933 CTACTCATCCAGGGCCTCTT 58.200 55.000 0.95 0.00 0.00 2.85
1827 4261 0.762461 GCTACTCATCCAGGGCCTCT 60.762 60.000 0.95 0.00 0.00 3.69
1828 4262 0.762461 AGCTACTCATCCAGGGCCTC 60.762 60.000 0.95 0.00 0.00 4.70
1829 4263 0.327000 AAGCTACTCATCCAGGGCCT 60.327 55.000 0.00 0.00 0.00 5.19
1830 4264 0.179034 CAAGCTACTCATCCAGGGCC 60.179 60.000 0.00 0.00 0.00 5.80
1831 4265 0.179034 CCAAGCTACTCATCCAGGGC 60.179 60.000 0.00 0.00 0.00 5.19
1832 4266 1.207791 ACCAAGCTACTCATCCAGGG 58.792 55.000 0.00 0.00 0.00 4.45
1833 4267 3.706594 TCTTACCAAGCTACTCATCCAGG 59.293 47.826 0.00 0.00 0.00 4.45
1834 4268 5.344743 TTCTTACCAAGCTACTCATCCAG 57.655 43.478 0.00 0.00 0.00 3.86
1835 4269 5.663106 AGATTCTTACCAAGCTACTCATCCA 59.337 40.000 0.00 0.00 0.00 3.41
1836 4270 5.988561 CAGATTCTTACCAAGCTACTCATCC 59.011 44.000 0.00 0.00 0.00 3.51
1837 4271 6.578023 ACAGATTCTTACCAAGCTACTCATC 58.422 40.000 0.00 0.00 0.00 2.92
1856 4290 7.263496 GGAAAGTACGTACAGGATTTACAGAT 58.737 38.462 26.55 0.00 0.00 2.90
1882 5541 1.202627 GCTCTGCTGGAGGACCAATAG 60.203 57.143 0.00 0.00 46.32 1.73
1901 5560 1.037579 GTAAGGATGTTGGCTGGGGC 61.038 60.000 0.00 0.00 37.82 5.80
1917 5576 4.758688 ACATCGCATGAGTGAAGATGTAA 58.241 39.130 14.00 0.00 45.10 2.41
1920 5579 3.619929 TGAACATCGCATGAGTGAAGATG 59.380 43.478 0.00 3.80 42.51 2.90
1933 5592 4.812091 TCTCTACTCTCTACTGAACATCGC 59.188 45.833 0.00 0.00 0.00 4.58
1942 5601 8.383374 TCCTAGAAGTTTCTCTACTCTCTACT 57.617 38.462 0.00 0.00 38.70 2.57
1943 5602 9.052759 CATCCTAGAAGTTTCTCTACTCTCTAC 57.947 40.741 0.00 0.00 38.70 2.59
1944 5603 8.774183 ACATCCTAGAAGTTTCTCTACTCTCTA 58.226 37.037 0.00 0.00 38.70 2.43
1945 5604 7.639378 ACATCCTAGAAGTTTCTCTACTCTCT 58.361 38.462 0.00 0.00 38.70 3.10
1946 5605 7.875327 ACATCCTAGAAGTTTCTCTACTCTC 57.125 40.000 0.00 0.00 38.70 3.20
1947 5606 7.340999 GGAACATCCTAGAAGTTTCTCTACTCT 59.659 40.741 0.00 0.00 38.70 3.24
1948 5607 7.485810 GGAACATCCTAGAAGTTTCTCTACTC 58.514 42.308 0.00 0.00 38.70 2.59
2076 5739 3.678056 ACTTCAACTAAGCGTCATGGA 57.322 42.857 0.00 0.00 38.93 3.41
2123 6051 8.801882 TTTGAGATACTTATTTTGGACGGAAT 57.198 30.769 0.00 0.00 0.00 3.01
2165 6212 9.032420 CCTCCGTCTCAAAATAAGTATCTTAAC 57.968 37.037 0.00 0.00 0.00 2.01
2166 6213 8.202137 CCCTCCGTCTCAAAATAAGTATCTTAA 58.798 37.037 0.00 0.00 0.00 1.85
2168 6215 6.383147 TCCCTCCGTCTCAAAATAAGTATCTT 59.617 38.462 0.00 0.00 0.00 2.40
2172 6219 5.021458 AGTCCCTCCGTCTCAAAATAAGTA 58.979 41.667 0.00 0.00 0.00 2.24
2175 6222 5.266788 TCTAGTCCCTCCGTCTCAAAATAA 58.733 41.667 0.00 0.00 0.00 1.40
2208 6255 7.780064 TCAAATGAATACCCACCATACATTTG 58.220 34.615 17.70 17.70 46.33 2.32
2221 6268 7.692291 CGTTCACACTACAATCAAATGAATACC 59.308 37.037 0.00 0.00 0.00 2.73
2234 6281 5.001237 TGAAGAGTTCGTTCACACTACAA 57.999 39.130 0.00 0.00 0.00 2.41
2235 6282 4.097437 ACTGAAGAGTTCGTTCACACTACA 59.903 41.667 0.00 0.00 30.69 2.74
2368 6440 1.822990 TCACGTAGAGGTAAAGCAGGG 59.177 52.381 0.00 0.00 0.00 4.45
2378 6450 4.441415 GCGTCTTATCAATTCACGTAGAGG 59.559 45.833 0.00 0.00 32.99 3.69
2399 6471 3.914966 GTGATTAGATGACAGGATACGCG 59.085 47.826 3.53 3.53 46.39 6.01
2401 6473 6.078202 AGTGTGATTAGATGACAGGATACG 57.922 41.667 0.00 0.00 46.39 3.06
2448 6521 5.728471 ACCTTGACATGATAACTCTGTCTG 58.272 41.667 0.00 0.00 39.94 3.51
2661 6738 3.074675 TGTCTCGAGGTTCTAGCTTCT 57.925 47.619 13.56 0.00 0.00 2.85
2737 6814 2.999355 CCTCTTTCTTCTCCTTTGAGCG 59.001 50.000 0.00 0.00 38.58 5.03
2793 6870 1.941325 CATCGACCAAAGTAGGAGGC 58.059 55.000 0.00 0.00 0.00 4.70
2826 6903 2.157834 TTTACAACGACACGATGCCT 57.842 45.000 0.00 0.00 33.06 4.75
2933 7018 1.237285 AACAATGCAGCGAGGACACC 61.237 55.000 0.00 0.00 0.00 4.16
3070 7163 5.001232 GCTTCATTGTTTGTAGTCCCTACA 58.999 41.667 0.07 0.07 44.00 2.74
3074 7167 3.071479 TCGCTTCATTGTTTGTAGTCCC 58.929 45.455 0.00 0.00 0.00 4.46
3087 7180 3.077556 ACCCTCGGCTCGCTTCAT 61.078 61.111 0.00 0.00 0.00 2.57
3153 7246 6.978338 TGACGACTTTTCAACTGTCTACTAT 58.022 36.000 0.00 0.00 0.00 2.12
3179 7273 4.101741 GCACTAATTCTATGGGGACTGAGT 59.898 45.833 0.00 0.00 0.00 3.41
3185 7279 4.037222 TCTGTGCACTAATTCTATGGGGA 58.963 43.478 19.41 0.00 0.00 4.81
3200 7295 1.889170 TGGTTGTTGTTGTTCTGTGCA 59.111 42.857 0.00 0.00 0.00 4.57
3232 7327 7.870509 TCTACGCTACTTTTCAATCTACCTA 57.129 36.000 0.00 0.00 0.00 3.08
3233 7328 6.770746 TCTACGCTACTTTTCAATCTACCT 57.229 37.500 0.00 0.00 0.00 3.08
3234 7329 7.201145 TGATCTACGCTACTTTTCAATCTACC 58.799 38.462 0.00 0.00 0.00 3.18
3235 7330 8.630278 TTGATCTACGCTACTTTTCAATCTAC 57.370 34.615 0.00 0.00 0.00 2.59
3236 7331 9.647797 TTTTGATCTACGCTACTTTTCAATCTA 57.352 29.630 0.00 0.00 0.00 1.98
3237 7332 8.547967 TTTTGATCTACGCTACTTTTCAATCT 57.452 30.769 0.00 0.00 0.00 2.40
3238 7333 9.214953 CATTTTGATCTACGCTACTTTTCAATC 57.785 33.333 0.00 0.00 0.00 2.67
3239 7334 8.946085 TCATTTTGATCTACGCTACTTTTCAAT 58.054 29.630 0.00 0.00 0.00 2.57
3240 7335 8.317891 TCATTTTGATCTACGCTACTTTTCAA 57.682 30.769 0.00 0.00 0.00 2.69
3241 7336 7.899178 TCATTTTGATCTACGCTACTTTTCA 57.101 32.000 0.00 0.00 0.00 2.69
3308 7420 1.745087 TCTTTGATGGATTTGCTCGGC 59.255 47.619 0.00 0.00 0.00 5.54
3391 7526 2.764547 GTTCTCCCCGCCTAGCCT 60.765 66.667 0.00 0.00 0.00 4.58
3430 7565 0.944311 GAAAAGGCGAGACGTCAGCA 60.944 55.000 28.48 0.00 32.13 4.41
3673 7809 7.870445 GGCTTTTGTTTTTGTATGTATCAAGGA 59.130 33.333 0.00 0.00 0.00 3.36
3689 7825 4.331968 TCCATGTCTATCGGCTTTTGTTT 58.668 39.130 0.00 0.00 0.00 2.83
3825 7963 4.129380 CAAATCTCACTCATATGCCGGAA 58.871 43.478 5.05 0.00 0.00 4.30
3827 7965 2.810274 CCAAATCTCACTCATATGCCGG 59.190 50.000 0.00 0.00 0.00 6.13
3829 7967 5.558818 AGATCCAAATCTCACTCATATGCC 58.441 41.667 0.00 0.00 37.75 4.40
3881 8020 2.027469 GTGACCTTCGTGGGGTATCTTT 60.027 50.000 2.69 0.00 41.11 2.52
3883 8022 1.192428 GTGACCTTCGTGGGGTATCT 58.808 55.000 2.69 0.00 41.11 1.98
3885 8024 1.553704 GAAGTGACCTTCGTGGGGTAT 59.446 52.381 2.69 0.00 37.92 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.