Multiple sequence alignment - TraesCS3D01G221300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G221300 chr3D 100.000 2225 0 0 1 2225 301772770 301770546 0.000000e+00 4109
1 TraesCS3D01G221300 chr3D 81.126 302 49 8 129 426 100502856 100503153 3.690000e-58 235
2 TraesCS3D01G221300 chr3A 89.932 1619 108 25 1 1593 433426629 433428218 0.000000e+00 2036
3 TraesCS3D01G221300 chr3A 84.683 457 54 7 1556 2011 433429982 433430423 2.030000e-120 442
4 TraesCS3D01G221300 chr3A 82.622 328 44 8 107 425 644630009 644630332 6.050000e-71 278
5 TraesCS3D01G221300 chr3B 89.809 1570 107 34 1 1538 419280396 419281944 0.000000e+00 1964
6 TraesCS3D01G221300 chr3B 84.279 458 54 8 1556 2011 419283199 419283640 4.390000e-117 431
7 TraesCS3D01G221300 chr3B 80.357 336 41 10 107 426 765547239 765546913 4.780000e-57 231
8 TraesCS3D01G221300 chr5A 82.727 330 39 9 106 425 656051544 656051223 6.050000e-71 278
9 TraesCS3D01G221300 chr4B 81.902 326 48 6 109 425 296156352 296156675 4.710000e-67 265
10 TraesCS3D01G221300 chr4B 78.261 322 57 10 106 419 491023818 491023502 6.270000e-46 195
11 TraesCS3D01G221300 chr7A 80.124 322 47 16 112 426 135749491 135749180 8.000000e-55 224
12 TraesCS3D01G221300 chr5D 80.272 294 53 4 106 394 507862887 507862594 1.340000e-52 217


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G221300 chr3D 301770546 301772770 2224 True 4109.0 4109 100.0000 1 2225 1 chr3D.!!$R1 2224
1 TraesCS3D01G221300 chr3A 433426629 433430423 3794 False 1239.0 2036 87.3075 1 2011 2 chr3A.!!$F2 2010
2 TraesCS3D01G221300 chr3B 419280396 419283640 3244 False 1197.5 1964 87.0440 1 2011 2 chr3B.!!$F1 2010

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
487 493 0.576798 CGGCATGTGCACTATACGTG 59.423 55.0 19.41 3.65 46.58 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2078 4010 0.104487 TGGCTACACGGACGAACAAA 59.896 50.0 0.0 0.0 0.0 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 8.370493 ACATATAGAATGACGTTTTGGATCTG 57.630 34.615 0.00 0.00 0.00 2.90
82 83 2.879103 ATGACGTTTTGGATCTGGGT 57.121 45.000 0.00 0.00 0.00 4.51
89 90 3.127548 CGTTTTGGATCTGGGTCTTCATG 59.872 47.826 0.00 0.00 0.00 3.07
96 97 2.190578 GGGTCTTCATGGAGGCCG 59.809 66.667 18.72 0.00 42.49 6.13
98 99 1.700042 GGGTCTTCATGGAGGCCGAT 61.700 60.000 18.72 0.00 42.49 4.18
182 184 7.120579 TCAGAATAAAATACAATGAAGTGGCGT 59.879 33.333 0.00 0.00 0.00 5.68
184 186 7.336931 AGAATAAAATACAATGAAGTGGCGTCT 59.663 33.333 0.00 0.00 0.00 4.18
186 188 6.811253 AAAATACAATGAAGTGGCGTCTTA 57.189 33.333 0.00 0.00 0.00 2.10
215 218 2.686915 GACAAATTCATGGCCTGAGAGG 59.313 50.000 3.32 0.00 38.80 3.69
224 227 3.334910 TGGCCTGAGAGGATGAATAGA 57.665 47.619 3.32 0.00 37.67 1.98
411 417 2.203126 CTCCATGAAGCTCGGCCC 60.203 66.667 0.00 0.00 0.00 5.80
427 433 1.202867 GGCCCCCAAAAGCAATTTCAA 60.203 47.619 0.00 0.00 0.00 2.69
431 437 4.039004 GCCCCCAAAAGCAATTTCAATTTT 59.961 37.500 0.00 0.00 0.00 1.82
487 493 0.576798 CGGCATGTGCACTATACGTG 59.423 55.000 19.41 3.65 46.58 4.49
491 497 3.485216 GGCATGTGCACTATACGTGTTTC 60.485 47.826 19.41 0.00 45.57 2.78
528 534 5.243954 TGGATCGGGTTTCACTATCATCTAG 59.756 44.000 0.00 0.00 0.00 2.43
532 538 7.834881 TCGGGTTTCACTATCATCTAGTATT 57.165 36.000 0.00 0.00 0.00 1.89
657 664 2.416547 AGTCTGATGTGCAATTACGTGC 59.583 45.455 0.00 0.00 45.15 5.34
661 668 1.319614 ATGTGCAATTACGTGCCCCC 61.320 55.000 0.00 0.00 44.26 5.40
680 690 4.798433 TGCTTGTGCATCTTCCGT 57.202 50.000 0.00 0.00 45.31 4.69
697 707 4.267357 TCCGTTTTGTTGAGAAAGTTCG 57.733 40.909 0.00 0.00 0.00 3.95
722 733 6.422400 GGAGAACTCTAAGAACAACTGAACAG 59.578 42.308 0.00 0.00 0.00 3.16
915 934 2.418368 AGCAAGCGGACCATCAATTA 57.582 45.000 0.00 0.00 0.00 1.40
916 935 2.722094 AGCAAGCGGACCATCAATTAA 58.278 42.857 0.00 0.00 0.00 1.40
917 936 3.290710 AGCAAGCGGACCATCAATTAAT 58.709 40.909 0.00 0.00 0.00 1.40
918 937 3.701040 AGCAAGCGGACCATCAATTAATT 59.299 39.130 0.00 0.00 0.00 1.40
940 959 2.493675 TCTAGCGCATCTATCCATCCAC 59.506 50.000 11.47 0.00 0.00 4.02
941 960 1.346062 AGCGCATCTATCCATCCACT 58.654 50.000 11.47 0.00 0.00 4.00
948 967 5.760253 CGCATCTATCCATCCACTAAACTTT 59.240 40.000 0.00 0.00 0.00 2.66
952 971 7.252612 TCTATCCATCCACTAAACTTTGACA 57.747 36.000 0.00 0.00 0.00 3.58
1065 1086 1.228033 GTGCCGGTGTAAGGTGGTT 60.228 57.895 1.90 0.00 0.00 3.67
1240 1261 1.135046 CTAATCGACCGCAGCATCTG 58.865 55.000 0.00 0.00 34.12 2.90
1365 1386 1.063469 AGCGAGGTTTTTGTTGTCGTG 59.937 47.619 0.00 0.00 33.19 4.35
1395 1416 2.261671 CTTCGCCGTGGCTGTACT 59.738 61.111 9.55 0.00 39.32 2.73
1416 1437 9.142515 TGTACTTAATATTTGTTCGTCGATGTT 57.857 29.630 4.21 0.00 0.00 2.71
1446 1472 2.391724 TTTGGTCACCCCGAGTGCTC 62.392 60.000 0.00 0.00 46.81 4.26
1448 1474 2.574399 GTCACCCCGAGTGCTCTC 59.426 66.667 5.69 5.69 46.81 3.20
1450 1476 1.679305 TCACCCCGAGTGCTCTCTC 60.679 63.158 13.53 4.47 46.81 3.20
1451 1477 2.363147 ACCCCGAGTGCTCTCTCC 60.363 66.667 13.53 0.00 38.45 3.71
1453 1479 2.124693 CCCCGAGTGCTCTCTCCTC 61.125 68.421 13.53 0.00 38.45 3.71
1454 1480 2.124693 CCCGAGTGCTCTCTCCTCC 61.125 68.421 13.53 0.00 38.45 4.30
1468 1505 2.927007 TCTCCTCCCTGACTCCTCTTTA 59.073 50.000 0.00 0.00 0.00 1.85
1493 1530 5.582550 GGAAAATGCTCTTTATGTAGTGCC 58.417 41.667 0.00 0.00 34.58 5.01
1511 1548 1.044611 CCCCCTCCGATCTTCTCTTC 58.955 60.000 0.00 0.00 0.00 2.87
1523 1560 7.445402 TCCGATCTTCTCTTCTTTGAAAAATGT 59.555 33.333 0.00 0.00 0.00 2.71
1548 1585 9.274206 GTTCCTTATGTAATGTTTCCTCCTATC 57.726 37.037 0.00 0.00 0.00 2.08
1567 1604 8.671384 TCCTATCCAAAATAAAATAGGTGTCG 57.329 34.615 7.05 0.00 40.98 4.35
1575 1612 9.680315 CAAAATAAAATAGGTGTCGTGGTTTTA 57.320 29.630 0.00 0.00 0.00 1.52
1576 1613 9.902196 AAAATAAAATAGGTGTCGTGGTTTTAG 57.098 29.630 0.00 0.00 0.00 1.85
1578 1615 6.947644 AAAATAGGTGTCGTGGTTTTAGTT 57.052 33.333 0.00 0.00 0.00 2.24
1580 1617 8.449251 AAAATAGGTGTCGTGGTTTTAGTTTA 57.551 30.769 0.00 0.00 0.00 2.01
1581 1618 8.625786 AAATAGGTGTCGTGGTTTTAGTTTAT 57.374 30.769 0.00 0.00 0.00 1.40
1618 3549 2.363680 TGAATCCTCTCAGATCCGAAGC 59.636 50.000 0.00 0.00 0.00 3.86
1652 3583 8.276325 GTGAAGTATTATTCAAACTAGCCATCG 58.724 37.037 0.00 0.00 40.72 3.84
1653 3584 7.985184 TGAAGTATTATTCAAACTAGCCATCGT 59.015 33.333 0.00 0.00 36.28 3.73
1654 3585 7.948278 AGTATTATTCAAACTAGCCATCGTC 57.052 36.000 0.00 0.00 0.00 4.20
1655 3586 5.907197 ATTATTCAAACTAGCCATCGTCG 57.093 39.130 0.00 0.00 0.00 5.12
1656 3587 2.736144 TTCAAACTAGCCATCGTCGT 57.264 45.000 0.00 0.00 0.00 4.34
1657 3588 2.273370 TCAAACTAGCCATCGTCGTC 57.727 50.000 0.00 0.00 0.00 4.20
1658 3589 1.542472 TCAAACTAGCCATCGTCGTCA 59.458 47.619 0.00 0.00 0.00 4.35
1659 3590 1.920574 CAAACTAGCCATCGTCGTCAG 59.079 52.381 0.00 0.00 0.00 3.51
1660 3591 1.174783 AACTAGCCATCGTCGTCAGT 58.825 50.000 0.00 0.00 0.00 3.41
1763 3695 0.614979 CCGGACTGGGAAGAGAAGGA 60.615 60.000 0.00 0.00 0.00 3.36
1792 3724 0.462789 CGGCGGTATGTAGGGAAGTT 59.537 55.000 0.00 0.00 0.00 2.66
1793 3725 1.682854 CGGCGGTATGTAGGGAAGTTA 59.317 52.381 0.00 0.00 0.00 2.24
1803 3735 5.147330 TGTAGGGAAGTTATATGGCATCG 57.853 43.478 1.65 0.00 0.00 3.84
1822 3754 0.172352 GTCTCTGTCTCGGGAAGCAG 59.828 60.000 0.00 0.00 33.20 4.24
1840 3772 2.694109 GCAGTCTACCGGGAGAAATAGT 59.306 50.000 20.82 0.00 0.00 2.12
1851 3783 6.381420 ACCGGGAGAAATAGTATCTCATATGG 59.619 42.308 6.32 4.22 44.13 2.74
1874 3806 5.162980 GGGGGATACATTTCCTACCAATTCT 60.163 44.000 0.00 0.00 35.97 2.40
1964 3896 1.889829 GCATCTAGAGCCGGACATAGT 59.110 52.381 5.05 0.00 0.00 2.12
1988 3920 4.706842 ATATGACCTCTTAAATGCCCGT 57.293 40.909 0.00 0.00 0.00 5.28
1995 3927 1.072489 TCTTAAATGCCCGTGGACACA 59.928 47.619 3.12 0.00 0.00 3.72
1997 3929 0.398696 TAAATGCCCGTGGACACACT 59.601 50.000 3.12 0.00 45.50 3.55
1998 3930 0.467290 AAATGCCCGTGGACACACTT 60.467 50.000 3.12 0.00 45.50 3.16
2014 3946 1.512926 ACTTGGTCAGTGATCAACGC 58.487 50.000 14.95 0.00 32.83 4.84
2015 3947 0.798776 CTTGGTCAGTGATCAACGCC 59.201 55.000 14.95 1.39 29.05 5.68
2016 3948 0.605319 TTGGTCAGTGATCAACGCCC 60.605 55.000 14.95 0.63 26.67 6.13
2017 3949 2.100631 GGTCAGTGATCAACGCCCG 61.101 63.158 0.00 0.00 0.00 6.13
2018 3950 1.374252 GTCAGTGATCAACGCCCGT 60.374 57.895 0.00 0.00 0.00 5.28
2019 3951 1.374125 TCAGTGATCAACGCCCGTG 60.374 57.895 0.00 0.00 0.00 4.94
2020 3952 2.047274 AGTGATCAACGCCCGTGG 60.047 61.111 0.00 0.00 0.00 4.94
2021 3953 2.047655 GTGATCAACGCCCGTGGA 60.048 61.111 0.00 0.00 31.93 4.02
2022 3954 2.047655 TGATCAACGCCCGTGGAC 60.048 61.111 0.00 0.00 29.85 4.02
2023 3955 2.047655 GATCAACGCCCGTGGACA 60.048 61.111 0.00 0.00 29.85 4.02
2024 3956 2.358247 ATCAACGCCCGTGGACAC 60.358 61.111 0.00 0.00 29.85 3.67
2034 3966 2.261671 GTGGACACGGTCAGCGAT 59.738 61.111 1.65 0.00 33.68 4.58
2035 3967 1.374252 GTGGACACGGTCAGCGATT 60.374 57.895 1.65 0.00 33.68 3.34
2036 3968 1.080093 TGGACACGGTCAGCGATTC 60.080 57.895 1.65 0.00 33.68 2.52
2037 3969 2.158959 GGACACGGTCAGCGATTCG 61.159 63.158 1.65 0.62 33.68 3.34
2038 3970 2.126071 ACACGGTCAGCGATTCGG 60.126 61.111 1.65 0.00 0.00 4.30
2039 3971 3.554692 CACGGTCAGCGATTCGGC 61.555 66.667 1.65 0.36 0.00 5.54
2042 3974 3.554692 GGTCAGCGATTCGGCGTG 61.555 66.667 6.85 0.00 38.18 5.34
2043 3975 2.809601 GTCAGCGATTCGGCGTGT 60.810 61.111 6.85 0.00 38.18 4.49
2044 3976 2.506217 TCAGCGATTCGGCGTGTC 60.506 61.111 6.85 5.48 38.18 3.67
2045 3977 3.554692 CAGCGATTCGGCGTGTCC 61.555 66.667 6.85 1.33 38.18 4.02
2054 3986 3.727146 GGCGTGTCCGTTTTGAGT 58.273 55.556 0.00 0.00 36.15 3.41
2055 3987 1.568025 GGCGTGTCCGTTTTGAGTC 59.432 57.895 0.00 0.00 36.15 3.36
2056 3988 1.568025 GCGTGTCCGTTTTGAGTCC 59.432 57.895 0.00 0.00 36.15 3.85
2057 3989 1.838568 GCGTGTCCGTTTTGAGTCCC 61.839 60.000 0.00 0.00 36.15 4.46
2058 3990 1.226030 CGTGTCCGTTTTGAGTCCCC 61.226 60.000 0.00 0.00 0.00 4.81
2059 3991 0.108019 GTGTCCGTTTTGAGTCCCCT 59.892 55.000 0.00 0.00 0.00 4.79
2060 3992 0.841289 TGTCCGTTTTGAGTCCCCTT 59.159 50.000 0.00 0.00 0.00 3.95
2061 3993 2.048601 TGTCCGTTTTGAGTCCCCTTA 58.951 47.619 0.00 0.00 0.00 2.69
2062 3994 2.640826 TGTCCGTTTTGAGTCCCCTTAT 59.359 45.455 0.00 0.00 0.00 1.73
2063 3995 3.073356 TGTCCGTTTTGAGTCCCCTTATT 59.927 43.478 0.00 0.00 0.00 1.40
2064 3996 4.077108 GTCCGTTTTGAGTCCCCTTATTT 58.923 43.478 0.00 0.00 0.00 1.40
2065 3997 4.076394 TCCGTTTTGAGTCCCCTTATTTG 58.924 43.478 0.00 0.00 0.00 2.32
2066 3998 3.824443 CCGTTTTGAGTCCCCTTATTTGT 59.176 43.478 0.00 0.00 0.00 2.83
2067 3999 4.082949 CCGTTTTGAGTCCCCTTATTTGTC 60.083 45.833 0.00 0.00 0.00 3.18
2068 4000 4.082949 CGTTTTGAGTCCCCTTATTTGTCC 60.083 45.833 0.00 0.00 0.00 4.02
2069 4001 3.343941 TTGAGTCCCCTTATTTGTCCG 57.656 47.619 0.00 0.00 0.00 4.79
2070 4002 2.542550 TGAGTCCCCTTATTTGTCCGA 58.457 47.619 0.00 0.00 0.00 4.55
2071 4003 2.500098 TGAGTCCCCTTATTTGTCCGAG 59.500 50.000 0.00 0.00 0.00 4.63
2072 4004 2.500504 GAGTCCCCTTATTTGTCCGAGT 59.499 50.000 0.00 0.00 0.00 4.18
2073 4005 2.500504 AGTCCCCTTATTTGTCCGAGTC 59.499 50.000 0.00 0.00 0.00 3.36
2074 4006 1.835531 TCCCCTTATTTGTCCGAGTCC 59.164 52.381 0.00 0.00 0.00 3.85
2075 4007 1.838077 CCCCTTATTTGTCCGAGTCCT 59.162 52.381 0.00 0.00 0.00 3.85
2076 4008 2.238898 CCCCTTATTTGTCCGAGTCCTT 59.761 50.000 0.00 0.00 0.00 3.36
2077 4009 3.453353 CCCCTTATTTGTCCGAGTCCTTA 59.547 47.826 0.00 0.00 0.00 2.69
2078 4010 4.102681 CCCCTTATTTGTCCGAGTCCTTAT 59.897 45.833 0.00 0.00 0.00 1.73
2079 4011 5.397559 CCCCTTATTTGTCCGAGTCCTTATT 60.398 44.000 0.00 0.00 0.00 1.40
2080 4012 6.120220 CCCTTATTTGTCCGAGTCCTTATTT 58.880 40.000 0.00 0.00 0.00 1.40
2081 4013 6.038271 CCCTTATTTGTCCGAGTCCTTATTTG 59.962 42.308 0.00 0.00 0.00 2.32
2082 4014 6.598064 CCTTATTTGTCCGAGTCCTTATTTGT 59.402 38.462 0.00 0.00 0.00 2.83
2083 4015 7.120726 CCTTATTTGTCCGAGTCCTTATTTGTT 59.879 37.037 0.00 0.00 0.00 2.83
2084 4016 5.934935 TTTGTCCGAGTCCTTATTTGTTC 57.065 39.130 0.00 0.00 0.00 3.18
2085 4017 3.581755 TGTCCGAGTCCTTATTTGTTCG 58.418 45.455 0.00 0.00 0.00 3.95
2086 4018 3.006110 TGTCCGAGTCCTTATTTGTTCGT 59.994 43.478 0.00 0.00 0.00 3.85
2087 4019 3.611549 GTCCGAGTCCTTATTTGTTCGTC 59.388 47.826 0.00 0.00 0.00 4.20
2088 4020 2.928116 CCGAGTCCTTATTTGTTCGTCC 59.072 50.000 0.00 0.00 0.00 4.79
2089 4021 2.597305 CGAGTCCTTATTTGTTCGTCCG 59.403 50.000 0.00 0.00 0.00 4.79
2090 4022 3.582780 GAGTCCTTATTTGTTCGTCCGT 58.417 45.455 0.00 0.00 0.00 4.69
2091 4023 3.323243 AGTCCTTATTTGTTCGTCCGTG 58.677 45.455 0.00 0.00 0.00 4.94
2092 4024 3.062042 GTCCTTATTTGTTCGTCCGTGT 58.938 45.455 0.00 0.00 0.00 4.49
2093 4025 4.022068 AGTCCTTATTTGTTCGTCCGTGTA 60.022 41.667 0.00 0.00 0.00 2.90
2094 4026 4.325472 GTCCTTATTTGTTCGTCCGTGTAG 59.675 45.833 0.00 0.00 0.00 2.74
2095 4027 3.061697 CCTTATTTGTTCGTCCGTGTAGC 59.938 47.826 0.00 0.00 0.00 3.58
2096 4028 1.435577 ATTTGTTCGTCCGTGTAGCC 58.564 50.000 0.00 0.00 0.00 3.93
2097 4029 0.104487 TTTGTTCGTCCGTGTAGCCA 59.896 50.000 0.00 0.00 0.00 4.75
2098 4030 0.319083 TTGTTCGTCCGTGTAGCCAT 59.681 50.000 0.00 0.00 0.00 4.40
2099 4031 1.175654 TGTTCGTCCGTGTAGCCATA 58.824 50.000 0.00 0.00 0.00 2.74
2100 4032 1.135315 TGTTCGTCCGTGTAGCCATAC 60.135 52.381 0.00 0.00 0.00 2.39
2101 4033 1.133790 GTTCGTCCGTGTAGCCATACT 59.866 52.381 0.00 0.00 32.75 2.12
2102 4034 1.466856 TCGTCCGTGTAGCCATACTT 58.533 50.000 0.00 0.00 32.75 2.24
2103 4035 1.820519 TCGTCCGTGTAGCCATACTTT 59.179 47.619 0.00 0.00 32.75 2.66
2104 4036 2.231964 TCGTCCGTGTAGCCATACTTTT 59.768 45.455 0.00 0.00 32.75 2.27
2105 4037 2.997986 CGTCCGTGTAGCCATACTTTTT 59.002 45.455 0.00 0.00 32.75 1.94
2106 4038 4.082300 TCGTCCGTGTAGCCATACTTTTTA 60.082 41.667 0.00 0.00 32.75 1.52
2107 4039 4.807304 CGTCCGTGTAGCCATACTTTTTAT 59.193 41.667 0.00 0.00 32.75 1.40
2108 4040 5.292589 CGTCCGTGTAGCCATACTTTTTATT 59.707 40.000 0.00 0.00 32.75 1.40
2109 4041 6.183360 CGTCCGTGTAGCCATACTTTTTATTT 60.183 38.462 0.00 0.00 32.75 1.40
2110 4042 7.532571 GTCCGTGTAGCCATACTTTTTATTTT 58.467 34.615 0.00 0.00 32.75 1.82
2111 4043 8.024865 GTCCGTGTAGCCATACTTTTTATTTTT 58.975 33.333 0.00 0.00 32.75 1.94
2112 4044 8.238631 TCCGTGTAGCCATACTTTTTATTTTTC 58.761 33.333 0.00 0.00 32.75 2.29
2113 4045 8.241367 CCGTGTAGCCATACTTTTTATTTTTCT 58.759 33.333 0.00 0.00 32.75 2.52
2114 4046 9.620660 CGTGTAGCCATACTTTTTATTTTTCTT 57.379 29.630 0.00 0.00 32.75 2.52
2133 4065 9.519191 TTTTTCTTCTCATATTTCCATCACTGA 57.481 29.630 0.00 0.00 0.00 3.41
2134 4066 9.519191 TTTTCTTCTCATATTTCCATCACTGAA 57.481 29.630 0.00 0.00 0.00 3.02
2135 4067 8.728337 TTCTTCTCATATTTCCATCACTGAAG 57.272 34.615 0.00 0.00 0.00 3.02
2136 4068 8.082672 TCTTCTCATATTTCCATCACTGAAGA 57.917 34.615 0.00 0.00 35.39 2.87
2137 4069 8.202811 TCTTCTCATATTTCCATCACTGAAGAG 58.797 37.037 0.00 0.00 33.64 2.85
2138 4070 7.666063 TCTCATATTTCCATCACTGAAGAGA 57.334 36.000 0.00 0.00 0.00 3.10
2139 4071 7.724287 TCTCATATTTCCATCACTGAAGAGAG 58.276 38.462 0.00 0.00 0.00 3.20
2140 4072 7.562821 TCTCATATTTCCATCACTGAAGAGAGA 59.437 37.037 0.00 0.00 0.00 3.10
2141 4073 8.082672 TCATATTTCCATCACTGAAGAGAGAA 57.917 34.615 0.00 0.00 0.00 2.87
2142 4074 8.542926 TCATATTTCCATCACTGAAGAGAGAAA 58.457 33.333 0.00 0.00 31.33 2.52
2143 4075 9.170734 CATATTTCCATCACTGAAGAGAGAAAA 57.829 33.333 0.00 0.00 30.88 2.29
2144 4076 9.745018 ATATTTCCATCACTGAAGAGAGAAAAA 57.255 29.630 0.00 0.00 30.88 1.94
2181 4113 4.736126 AAAAAGAAAAGGTGGTCAGTGG 57.264 40.909 0.00 0.00 0.00 4.00
2182 4114 3.662759 AAAGAAAAGGTGGTCAGTGGA 57.337 42.857 0.00 0.00 0.00 4.02
2183 4115 2.938956 AGAAAAGGTGGTCAGTGGAG 57.061 50.000 0.00 0.00 0.00 3.86
2184 4116 1.421646 AGAAAAGGTGGTCAGTGGAGG 59.578 52.381 0.00 0.00 0.00 4.30
2185 4117 0.478507 AAAAGGTGGTCAGTGGAGGG 59.521 55.000 0.00 0.00 0.00 4.30
2186 4118 1.427072 AAAGGTGGTCAGTGGAGGGG 61.427 60.000 0.00 0.00 0.00 4.79
2187 4119 4.035102 GGTGGTCAGTGGAGGGGC 62.035 72.222 0.00 0.00 0.00 5.80
2188 4120 4.035102 GTGGTCAGTGGAGGGGCC 62.035 72.222 0.00 0.00 37.10 5.80
2212 4144 2.947542 CGAGCCCTCGTATCCTCG 59.052 66.667 9.41 0.00 46.99 4.63
2213 4145 2.618219 CGAGCCCTCGTATCCTCGG 61.618 68.421 9.41 0.00 46.99 4.63
2214 4146 2.203509 AGCCCTCGTATCCTCGGG 60.204 66.667 0.00 0.00 39.76 5.14
2217 4149 2.203509 CCTCGTATCCTCGGGGCT 60.204 66.667 0.00 0.00 44.58 5.19
2218 4150 2.565645 CCTCGTATCCTCGGGGCTG 61.566 68.421 0.00 0.00 44.58 4.85
2219 4151 3.214250 CTCGTATCCTCGGGGCTGC 62.214 68.421 0.00 0.00 0.00 5.25
2220 4152 3.227276 CGTATCCTCGGGGCTGCT 61.227 66.667 0.00 0.00 0.00 4.24
2221 4153 2.423446 GTATCCTCGGGGCTGCTG 59.577 66.667 0.00 0.00 0.00 4.41
2222 4154 3.550431 TATCCTCGGGGCTGCTGC 61.550 66.667 7.10 7.10 38.76 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 1.700042 ATCGGCCTCCATGAAGACCC 61.700 60.000 0.00 0.00 0.00 4.46
82 83 2.806945 AAAATCGGCCTCCATGAAGA 57.193 45.000 0.00 0.00 0.00 2.87
119 121 4.642429 ACACCTCACATCCTTGTTTACTC 58.358 43.478 0.00 0.00 32.34 2.59
207 210 6.874664 CACATGATTCTATTCATCCTCTCAGG 59.125 42.308 0.00 0.00 34.09 3.86
224 227 8.962884 AAAAAGAGGCTTTTTAACACATGATT 57.037 26.923 14.26 0.00 30.64 2.57
252 258 6.650390 TGAAATACGTTAAGGTAAGGGTTGTC 59.350 38.462 11.72 1.58 0.00 3.18
304 310 7.886629 AAATACTGACATACATGAAGGCATT 57.113 32.000 0.00 0.00 30.68 3.56
356 362 8.462938 CAAAATGCAAAATTCACGAAAATTCAC 58.537 29.630 0.00 0.00 0.00 3.18
411 417 9.747293 ACATTTAAAATTGAAATTGCTTTTGGG 57.253 25.926 0.00 0.00 0.00 4.12
455 461 0.107993 CATGCCGTCAGACCATCAGT 60.108 55.000 0.00 0.00 0.00 3.41
528 534 6.508563 CGCATGCCGTTATCTGATGATAATAC 60.509 42.308 13.15 0.00 44.16 1.89
532 538 3.253230 CGCATGCCGTTATCTGATGATA 58.747 45.455 13.15 0.00 34.32 2.15
537 543 1.153469 TGCGCATGCCGTTATCTGA 60.153 52.632 13.15 0.00 41.78 3.27
538 544 1.010797 GTGCGCATGCCGTTATCTG 60.011 57.895 15.91 0.00 41.78 2.90
539 545 0.104120 TAGTGCGCATGCCGTTATCT 59.896 50.000 15.91 4.80 41.78 1.98
680 690 5.646360 AGTTCTCCGAACTTTCTCAACAAAA 59.354 36.000 3.55 0.00 0.00 2.44
697 707 6.281405 TGTTCAGTTGTTCTTAGAGTTCTCC 58.719 40.000 0.00 0.00 0.00 3.71
915 934 5.181748 GGATGGATAGATGCGCTAGAAATT 58.818 41.667 9.73 0.00 31.33 1.82
916 935 4.223700 TGGATGGATAGATGCGCTAGAAAT 59.776 41.667 9.73 0.00 31.33 2.17
917 936 3.578282 TGGATGGATAGATGCGCTAGAAA 59.422 43.478 9.73 0.00 31.33 2.52
918 937 3.056536 GTGGATGGATAGATGCGCTAGAA 60.057 47.826 9.73 0.00 31.33 2.10
940 959 9.552114 CAGATAGAATGCTTTGTCAAAGTTTAG 57.448 33.333 23.07 2.38 40.64 1.85
941 960 9.283768 TCAGATAGAATGCTTTGTCAAAGTTTA 57.716 29.630 23.07 12.52 40.64 2.01
948 967 4.633126 GCTGTCAGATAGAATGCTTTGTCA 59.367 41.667 3.32 0.00 0.00 3.58
952 971 4.841422 AGTGCTGTCAGATAGAATGCTTT 58.159 39.130 3.32 0.00 0.00 3.51
990 1011 1.274798 CGAACGCCATTGTTGTTGCC 61.275 55.000 0.00 0.00 30.75 4.52
1056 1077 2.751688 GTCGGGCCAACCACCTTA 59.248 61.111 4.39 0.00 40.22 2.69
1158 1179 3.780173 TGACCCATGATGCGGCGA 61.780 61.111 12.98 0.00 0.00 5.54
1240 1261 0.460987 CAGATCACCACCGAAGAGGC 60.461 60.000 0.00 0.00 46.52 4.70
1395 1416 8.246908 ACTCAACATCGACGAACAAATATTAA 57.753 30.769 0.00 0.00 0.00 1.40
1416 1437 2.846193 GGTGACCAAAACAGCTACTCA 58.154 47.619 0.00 0.00 33.71 3.41
1446 1472 0.926293 AGAGGAGTCAGGGAGGAGAG 59.074 60.000 0.00 0.00 0.00 3.20
1448 1474 2.246091 AAAGAGGAGTCAGGGAGGAG 57.754 55.000 0.00 0.00 0.00 3.69
1450 1476 1.751924 CGTAAAGAGGAGTCAGGGAGG 59.248 57.143 0.00 0.00 0.00 4.30
1451 1477 1.751924 CCGTAAAGAGGAGTCAGGGAG 59.248 57.143 0.00 0.00 0.00 4.30
1453 1479 1.848652 TCCGTAAAGAGGAGTCAGGG 58.151 55.000 0.00 0.00 33.19 4.45
1454 1480 3.955650 TTTCCGTAAAGAGGAGTCAGG 57.044 47.619 0.00 0.00 39.22 3.86
1468 1505 5.163754 GCACTACATAAAGAGCATTTTCCGT 60.164 40.000 0.00 0.00 33.79 4.69
1493 1530 2.080654 AGAAGAGAAGATCGGAGGGG 57.919 55.000 0.00 0.00 0.00 4.79
1523 1560 8.437575 GGATAGGAGGAAACATTACATAAGGAA 58.562 37.037 0.00 0.00 0.00 3.36
1548 1585 6.262193 ACCACGACACCTATTTTATTTTGG 57.738 37.500 0.00 0.00 0.00 3.28
1608 3539 0.603569 ACGACACTTGCTTCGGATCT 59.396 50.000 0.00 0.00 39.63 2.75
1618 3549 8.495949 AGTTTGAATAATACTTCACGACACTTG 58.504 33.333 0.00 0.00 34.96 3.16
1652 3583 0.938168 GGTGGTGACGAACTGACGAC 60.938 60.000 0.00 0.00 37.03 4.34
1653 3584 1.105167 AGGTGGTGACGAACTGACGA 61.105 55.000 0.00 0.00 37.03 4.20
1654 3585 0.663568 GAGGTGGTGACGAACTGACG 60.664 60.000 0.00 0.00 39.31 4.35
1655 3586 0.663568 CGAGGTGGTGACGAACTGAC 60.664 60.000 0.00 0.00 0.00 3.51
1656 3587 1.658114 CGAGGTGGTGACGAACTGA 59.342 57.895 0.00 0.00 0.00 3.41
1657 3588 1.372997 CCGAGGTGGTGACGAACTG 60.373 63.158 0.00 0.00 0.00 3.16
1658 3589 3.048602 CCGAGGTGGTGACGAACT 58.951 61.111 0.00 0.00 0.00 3.01
1659 3590 2.737376 GCCGAGGTGGTGACGAAC 60.737 66.667 0.00 0.00 41.21 3.95
1701 3632 4.043059 AGTGGAGACCTATCTATCGCCTTA 59.957 45.833 0.00 0.00 35.93 2.69
1704 3635 2.750712 GAGTGGAGACCTATCTATCGCC 59.249 54.545 0.00 0.00 34.34 5.54
1706 3637 4.019681 AGAGGAGTGGAGACCTATCTATCG 60.020 50.000 0.00 0.00 36.57 2.92
1709 3640 4.287585 GCTAGAGGAGTGGAGACCTATCTA 59.712 50.000 0.00 0.00 36.57 1.98
1746 3678 1.199615 CCTCCTTCTCTTCCCAGTCC 58.800 60.000 0.00 0.00 0.00 3.85
1763 3695 4.753662 TACCGCCGCCTCAGTCCT 62.754 66.667 0.00 0.00 0.00 3.85
1792 3724 3.437049 CGAGACAGAGACGATGCCATATA 59.563 47.826 0.00 0.00 0.00 0.86
1793 3725 2.227626 CGAGACAGAGACGATGCCATAT 59.772 50.000 0.00 0.00 0.00 1.78
1803 3735 0.172352 CTGCTTCCCGAGACAGAGAC 59.828 60.000 0.00 0.00 33.84 3.36
1822 3754 6.002704 TGAGATACTATTTCTCCCGGTAGAC 58.997 44.000 0.00 0.00 39.10 2.59
1840 3772 7.206251 AGGAAATGTATCCCCCATATGAGATA 58.794 38.462 3.65 5.28 40.59 1.98
1851 3783 5.953571 AGAATTGGTAGGAAATGTATCCCC 58.046 41.667 0.00 0.00 40.59 4.81
1951 3883 5.047235 AGGTCATATTTACTATGTCCGGCTC 60.047 44.000 0.00 0.00 45.40 4.70
1964 3896 6.485313 CACGGGCATTTAAGAGGTCATATTTA 59.515 38.462 0.00 0.00 0.00 1.40
1984 3916 1.597027 GACCAAGTGTGTCCACGGG 60.597 63.158 0.00 0.00 46.56 5.28
1995 3927 1.512926 GCGTTGATCACTGACCAAGT 58.487 50.000 0.00 0.00 40.93 3.16
1997 3929 0.605319 GGGCGTTGATCACTGACCAA 60.605 55.000 12.48 0.00 29.93 3.67
1998 3930 1.003839 GGGCGTTGATCACTGACCA 60.004 57.895 12.48 0.00 29.93 4.02
2017 3949 1.352156 GAATCGCTGACCGTGTCCAC 61.352 60.000 2.23 0.00 38.35 4.02
2018 3950 1.080093 GAATCGCTGACCGTGTCCA 60.080 57.895 2.23 0.00 38.35 4.02
2019 3951 2.158959 CGAATCGCTGACCGTGTCC 61.159 63.158 0.00 0.00 38.35 4.02
2020 3952 2.158959 CCGAATCGCTGACCGTGTC 61.159 63.158 0.00 0.00 38.35 3.67
2021 3953 2.126071 CCGAATCGCTGACCGTGT 60.126 61.111 0.00 0.00 38.35 4.49
2022 3954 3.554692 GCCGAATCGCTGACCGTG 61.555 66.667 0.00 0.00 38.35 4.94
2025 3957 3.554692 CACGCCGAATCGCTGACC 61.555 66.667 0.00 0.00 0.00 4.02
2026 3958 2.789203 GACACGCCGAATCGCTGAC 61.789 63.158 0.00 0.00 0.00 3.51
2027 3959 2.506217 GACACGCCGAATCGCTGA 60.506 61.111 0.00 0.00 0.00 4.26
2028 3960 3.554692 GGACACGCCGAATCGCTG 61.555 66.667 0.00 0.00 0.00 5.18
2037 3969 1.568025 GACTCAAAACGGACACGCC 59.432 57.895 0.00 0.00 46.04 5.68
2038 3970 1.568025 GGACTCAAAACGGACACGC 59.432 57.895 0.00 0.00 46.04 5.34
2039 3971 3.572001 AGGGGACTCAAAACGGACACG 62.572 57.143 0.00 0.00 41.74 4.49
2040 3972 0.108019 AGGGGACTCAAAACGGACAC 59.892 55.000 0.00 0.00 32.90 3.67
2041 3973 0.841289 AAGGGGACTCAAAACGGACA 59.159 50.000 0.00 0.00 42.68 4.02
2042 3974 2.845363 TAAGGGGACTCAAAACGGAC 57.155 50.000 0.00 0.00 42.68 4.79
2043 3975 4.076394 CAAATAAGGGGACTCAAAACGGA 58.924 43.478 0.00 0.00 42.68 4.69
2044 3976 3.824443 ACAAATAAGGGGACTCAAAACGG 59.176 43.478 0.00 0.00 42.68 4.44
2045 3977 4.082949 GGACAAATAAGGGGACTCAAAACG 60.083 45.833 0.00 0.00 42.68 3.60
2046 3978 4.082949 CGGACAAATAAGGGGACTCAAAAC 60.083 45.833 0.00 0.00 42.68 2.43
2047 3979 4.076394 CGGACAAATAAGGGGACTCAAAA 58.924 43.478 0.00 0.00 42.68 2.44
2048 3980 3.328343 TCGGACAAATAAGGGGACTCAAA 59.672 43.478 0.00 0.00 42.68 2.69
2049 3981 2.907696 TCGGACAAATAAGGGGACTCAA 59.092 45.455 0.00 0.00 42.68 3.02
2050 3982 2.500098 CTCGGACAAATAAGGGGACTCA 59.500 50.000 0.00 0.00 42.68 3.41
2051 3983 2.500504 ACTCGGACAAATAAGGGGACTC 59.499 50.000 0.00 0.00 42.68 3.36
2053 3985 2.419713 GGACTCGGACAAATAAGGGGAC 60.420 54.545 0.00 0.00 0.00 4.46
2054 3986 1.835531 GGACTCGGACAAATAAGGGGA 59.164 52.381 0.00 0.00 0.00 4.81
2055 3987 1.838077 AGGACTCGGACAAATAAGGGG 59.162 52.381 0.00 0.00 0.00 4.79
2056 3988 3.629142 AAGGACTCGGACAAATAAGGG 57.371 47.619 0.00 0.00 0.00 3.95
2057 3989 6.598064 ACAAATAAGGACTCGGACAAATAAGG 59.402 38.462 0.00 0.00 0.00 2.69
2058 3990 7.611213 ACAAATAAGGACTCGGACAAATAAG 57.389 36.000 0.00 0.00 0.00 1.73
2059 3991 7.148540 CGAACAAATAAGGACTCGGACAAATAA 60.149 37.037 0.00 0.00 0.00 1.40
2060 3992 6.311935 CGAACAAATAAGGACTCGGACAAATA 59.688 38.462 0.00 0.00 0.00 1.40
2061 3993 5.121768 CGAACAAATAAGGACTCGGACAAAT 59.878 40.000 0.00 0.00 0.00 2.32
2062 3994 4.449743 CGAACAAATAAGGACTCGGACAAA 59.550 41.667 0.00 0.00 0.00 2.83
2063 3995 3.991773 CGAACAAATAAGGACTCGGACAA 59.008 43.478 0.00 0.00 0.00 3.18
2064 3996 3.006110 ACGAACAAATAAGGACTCGGACA 59.994 43.478 0.00 0.00 0.00 4.02
2065 3997 3.582780 ACGAACAAATAAGGACTCGGAC 58.417 45.455 0.00 0.00 0.00 4.79
2066 3998 3.367703 GGACGAACAAATAAGGACTCGGA 60.368 47.826 0.00 0.00 0.00 4.55
2067 3999 2.928116 GGACGAACAAATAAGGACTCGG 59.072 50.000 0.00 0.00 0.00 4.63
2068 4000 2.597305 CGGACGAACAAATAAGGACTCG 59.403 50.000 0.00 0.00 0.00 4.18
2069 4001 3.367025 CACGGACGAACAAATAAGGACTC 59.633 47.826 0.00 0.00 0.00 3.36
2070 4002 3.243975 ACACGGACGAACAAATAAGGACT 60.244 43.478 0.00 0.00 0.00 3.85
2071 4003 3.062042 ACACGGACGAACAAATAAGGAC 58.938 45.455 0.00 0.00 0.00 3.85
2072 4004 3.389925 ACACGGACGAACAAATAAGGA 57.610 42.857 0.00 0.00 0.00 3.36
2073 4005 3.061697 GCTACACGGACGAACAAATAAGG 59.938 47.826 0.00 0.00 0.00 2.69
2074 4006 3.061697 GGCTACACGGACGAACAAATAAG 59.938 47.826 0.00 0.00 0.00 1.73
2075 4007 2.995258 GGCTACACGGACGAACAAATAA 59.005 45.455 0.00 0.00 0.00 1.40
2076 4008 2.029200 TGGCTACACGGACGAACAAATA 60.029 45.455 0.00 0.00 0.00 1.40
2077 4009 1.270412 TGGCTACACGGACGAACAAAT 60.270 47.619 0.00 0.00 0.00 2.32
2078 4010 0.104487 TGGCTACACGGACGAACAAA 59.896 50.000 0.00 0.00 0.00 2.83
2079 4011 0.319083 ATGGCTACACGGACGAACAA 59.681 50.000 0.00 0.00 0.00 2.83
2080 4012 1.135315 GTATGGCTACACGGACGAACA 60.135 52.381 0.00 0.00 0.00 3.18
2081 4013 1.133790 AGTATGGCTACACGGACGAAC 59.866 52.381 0.00 0.00 0.00 3.95
2082 4014 1.466856 AGTATGGCTACACGGACGAA 58.533 50.000 0.00 0.00 0.00 3.85
2083 4015 1.466856 AAGTATGGCTACACGGACGA 58.533 50.000 0.00 0.00 0.00 4.20
2084 4016 2.288961 AAAGTATGGCTACACGGACG 57.711 50.000 0.00 0.00 0.00 4.79
2085 4017 6.673154 AATAAAAAGTATGGCTACACGGAC 57.327 37.500 0.00 0.00 0.00 4.79
2086 4018 7.690952 AAAATAAAAAGTATGGCTACACGGA 57.309 32.000 0.00 0.00 0.00 4.69
2087 4019 8.241367 AGAAAAATAAAAAGTATGGCTACACGG 58.759 33.333 0.00 0.00 0.00 4.94
2088 4020 9.620660 AAGAAAAATAAAAAGTATGGCTACACG 57.379 29.630 0.00 0.00 0.00 4.49
2107 4039 9.519191 TCAGTGATGGAAATATGAGAAGAAAAA 57.481 29.630 0.00 0.00 0.00 1.94
2108 4040 9.519191 TTCAGTGATGGAAATATGAGAAGAAAA 57.481 29.630 0.00 0.00 0.00 2.29
2109 4041 9.170734 CTTCAGTGATGGAAATATGAGAAGAAA 57.829 33.333 0.00 0.00 32.67 2.52
2110 4042 8.542926 TCTTCAGTGATGGAAATATGAGAAGAA 58.457 33.333 6.21 0.00 36.00 2.52
2111 4043 8.082672 TCTTCAGTGATGGAAATATGAGAAGA 57.917 34.615 6.21 0.00 36.42 2.87
2112 4044 8.202811 TCTCTTCAGTGATGGAAATATGAGAAG 58.797 37.037 6.21 0.00 0.00 2.85
2113 4045 8.082672 TCTCTTCAGTGATGGAAATATGAGAA 57.917 34.615 6.21 0.00 0.00 2.87
2114 4046 7.562821 TCTCTCTTCAGTGATGGAAATATGAGA 59.437 37.037 6.21 7.11 0.00 3.27
2115 4047 7.724287 TCTCTCTTCAGTGATGGAAATATGAG 58.276 38.462 6.21 5.31 0.00 2.90
2116 4048 7.666063 TCTCTCTTCAGTGATGGAAATATGA 57.334 36.000 6.21 0.00 0.00 2.15
2117 4049 8.728337 TTTCTCTCTTCAGTGATGGAAATATG 57.272 34.615 6.21 0.00 0.00 1.78
2118 4050 9.745018 TTTTTCTCTCTTCAGTGATGGAAATAT 57.255 29.630 6.21 0.00 0.00 1.28
2160 4092 4.349365 TCCACTGACCACCTTTTCTTTTT 58.651 39.130 0.00 0.00 0.00 1.94
2161 4093 3.954258 CTCCACTGACCACCTTTTCTTTT 59.046 43.478 0.00 0.00 0.00 2.27
2162 4094 3.555966 CTCCACTGACCACCTTTTCTTT 58.444 45.455 0.00 0.00 0.00 2.52
2163 4095 2.158608 CCTCCACTGACCACCTTTTCTT 60.159 50.000 0.00 0.00 0.00 2.52
2164 4096 1.421646 CCTCCACTGACCACCTTTTCT 59.578 52.381 0.00 0.00 0.00 2.52
2165 4097 1.545651 CCCTCCACTGACCACCTTTTC 60.546 57.143 0.00 0.00 0.00 2.29
2166 4098 0.478507 CCCTCCACTGACCACCTTTT 59.521 55.000 0.00 0.00 0.00 2.27
2167 4099 1.427072 CCCCTCCACTGACCACCTTT 61.427 60.000 0.00 0.00 0.00 3.11
2168 4100 1.847968 CCCCTCCACTGACCACCTT 60.848 63.158 0.00 0.00 0.00 3.50
2169 4101 2.203998 CCCCTCCACTGACCACCT 60.204 66.667 0.00 0.00 0.00 4.00
2170 4102 4.035102 GCCCCTCCACTGACCACC 62.035 72.222 0.00 0.00 0.00 4.61
2171 4103 4.035102 GGCCCCTCCACTGACCAC 62.035 72.222 0.00 0.00 34.01 4.16
2196 4128 3.356837 CCGAGGATACGAGGGCTC 58.643 66.667 0.00 0.00 46.39 4.70
2200 4132 2.203509 AGCCCCGAGGATACGAGG 60.204 66.667 0.00 0.00 46.39 4.63
2201 4133 3.043419 CAGCCCCGAGGATACGAG 58.957 66.667 0.00 0.00 46.39 4.18
2202 4134 3.224324 GCAGCCCCGAGGATACGA 61.224 66.667 0.00 0.00 46.39 3.43
2203 4135 3.227276 AGCAGCCCCGAGGATACG 61.227 66.667 0.00 0.00 46.39 3.06
2204 4136 2.423446 CAGCAGCCCCGAGGATAC 59.577 66.667 0.00 0.00 33.47 2.24
2205 4137 3.550431 GCAGCAGCCCCGAGGATA 61.550 66.667 0.00 0.00 33.47 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.