Multiple sequence alignment - TraesCS3D01G220900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3D01G220900 | chr3D | 100.000 | 6964 | 0 | 0 | 1 | 6964 | 301446553 | 301439590 | 0.000000e+00 | 12861.0 |
1 | TraesCS3D01G220900 | chr3D | 83.154 | 558 | 71 | 15 | 2 | 539 | 604298919 | 604299473 | 8.120000e-134 | 488.0 |
2 | TraesCS3D01G220900 | chr3D | 93.069 | 303 | 21 | 0 | 6660 | 6962 | 25538709 | 25538407 | 1.780000e-120 | 444.0 |
3 | TraesCS3D01G220900 | chr3D | 92.739 | 303 | 20 | 1 | 6660 | 6962 | 41141429 | 41141129 | 2.980000e-118 | 436.0 |
4 | TraesCS3D01G220900 | chr3D | 87.912 | 91 | 6 | 4 | 6158 | 6245 | 557459100 | 557459188 | 1.240000e-17 | 102.0 |
5 | TraesCS3D01G220900 | chr3B | 95.342 | 5560 | 191 | 25 | 557 | 6093 | 419761421 | 419766935 | 0.000000e+00 | 8770.0 |
6 | TraesCS3D01G220900 | chr3B | 94.590 | 573 | 17 | 3 | 6077 | 6635 | 419766950 | 419767522 | 0.000000e+00 | 874.0 |
7 | TraesCS3D01G220900 | chr3B | 92.500 | 40 | 2 | 1 | 537 | 575 | 253893203 | 253893164 | 1.000000e-03 | 56.5 |
8 | TraesCS3D01G220900 | chr3A | 96.336 | 3384 | 105 | 9 | 2523 | 5896 | 433997287 | 434000661 | 0.000000e+00 | 5544.0 |
9 | TraesCS3D01G220900 | chr3A | 93.493 | 1967 | 94 | 17 | 566 | 2530 | 433994436 | 433996370 | 0.000000e+00 | 2892.0 |
10 | TraesCS3D01G220900 | chr3A | 94.954 | 753 | 20 | 6 | 5923 | 6659 | 434000658 | 434001408 | 0.000000e+00 | 1164.0 |
11 | TraesCS3D01G220900 | chr3A | 93.031 | 287 | 19 | 1 | 6661 | 6947 | 514268109 | 514267824 | 1.080000e-112 | 418.0 |
12 | TraesCS3D01G220900 | chr3A | 80.470 | 553 | 77 | 21 | 5 | 542 | 409490152 | 409489616 | 1.820000e-105 | 394.0 |
13 | TraesCS3D01G220900 | chr3A | 85.542 | 83 | 5 | 6 | 6158 | 6233 | 713309480 | 713309398 | 5.790000e-11 | 80.5 |
14 | TraesCS3D01G220900 | chr3A | 97.222 | 36 | 1 | 0 | 540 | 575 | 19686777 | 19686742 | 2.100000e-05 | 62.1 |
15 | TraesCS3D01G220900 | chr5B | 87.844 | 2468 | 292 | 8 | 3071 | 5535 | 675080220 | 675082682 | 0.000000e+00 | 2889.0 |
16 | TraesCS3D01G220900 | chr5B | 87.637 | 2467 | 297 | 8 | 3071 | 5534 | 674892251 | 674894712 | 0.000000e+00 | 2859.0 |
17 | TraesCS3D01G220900 | chr5B | 82.686 | 566 | 66 | 13 | 1 | 542 | 377132568 | 377132011 | 2.270000e-129 | 473.0 |
18 | TraesCS3D01G220900 | chr7B | 87.857 | 2454 | 292 | 6 | 3071 | 5521 | 624351128 | 624353578 | 0.000000e+00 | 2876.0 |
19 | TraesCS3D01G220900 | chr7B | 96.875 | 32 | 1 | 0 | 508 | 539 | 244663264 | 244663295 | 4.000000e-03 | 54.7 |
20 | TraesCS3D01G220900 | chr5D | 87.652 | 2470 | 293 | 11 | 3071 | 5535 | 534637034 | 534639496 | 0.000000e+00 | 2861.0 |
21 | TraesCS3D01G220900 | chr5D | 87.520 | 2452 | 300 | 6 | 3071 | 5519 | 534865051 | 534867499 | 0.000000e+00 | 2828.0 |
22 | TraesCS3D01G220900 | chr5D | 83.214 | 560 | 63 | 16 | 5 | 539 | 133375364 | 133375917 | 1.050000e-132 | 484.0 |
23 | TraesCS3D01G220900 | chr7D | 87.607 | 2453 | 300 | 4 | 3071 | 5521 | 568598504 | 568600954 | 0.000000e+00 | 2843.0 |
24 | TraesCS3D01G220900 | chr7D | 93.069 | 303 | 21 | 0 | 6660 | 6962 | 496105656 | 496105354 | 1.780000e-120 | 444.0 |
25 | TraesCS3D01G220900 | chr7D | 82.004 | 489 | 51 | 16 | 81 | 539 | 39185849 | 39185368 | 1.420000e-101 | 381.0 |
26 | TraesCS3D01G220900 | chr7D | 97.619 | 42 | 0 | 1 | 540 | 580 | 602852556 | 602852597 | 3.480000e-08 | 71.3 |
27 | TraesCS3D01G220900 | chr4A | 87.394 | 2467 | 299 | 12 | 3071 | 5532 | 636687164 | 636684705 | 0.000000e+00 | 2822.0 |
28 | TraesCS3D01G220900 | chr4A | 83.673 | 147 | 21 | 3 | 2086 | 2231 | 636687839 | 636687695 | 1.220000e-27 | 135.0 |
29 | TraesCS3D01G220900 | chr1D | 73.937 | 2398 | 537 | 72 | 3071 | 5412 | 10025406 | 10027771 | 0.000000e+00 | 885.0 |
30 | TraesCS3D01G220900 | chr1D | 94.059 | 303 | 18 | 0 | 6660 | 6962 | 456923922 | 456923620 | 1.770000e-125 | 460.0 |
31 | TraesCS3D01G220900 | chr1D | 92.409 | 303 | 23 | 0 | 6660 | 6962 | 470880757 | 470880455 | 3.860000e-117 | 433.0 |
32 | TraesCS3D01G220900 | chr1D | 82.979 | 94 | 6 | 7 | 6154 | 6240 | 106956552 | 106956462 | 7.490000e-10 | 76.8 |
33 | TraesCS3D01G220900 | chr1D | 94.737 | 38 | 1 | 1 | 540 | 577 | 470941562 | 470941598 | 2.710000e-04 | 58.4 |
34 | TraesCS3D01G220900 | chr1A | 76.379 | 1613 | 310 | 49 | 3071 | 4641 | 11719838 | 11721421 | 0.000000e+00 | 802.0 |
35 | TraesCS3D01G220900 | chr1A | 82.979 | 94 | 6 | 7 | 6154 | 6240 | 105905172 | 105905262 | 7.490000e-10 | 76.8 |
36 | TraesCS3D01G220900 | chr4D | 84.258 | 559 | 61 | 15 | 4 | 539 | 506102194 | 506101640 | 2.880000e-143 | 520.0 |
37 | TraesCS3D01G220900 | chr4D | 83.769 | 536 | 55 | 18 | 27 | 539 | 310011263 | 310011789 | 4.890000e-131 | 479.0 |
38 | TraesCS3D01G220900 | chr4D | 82.819 | 518 | 62 | 9 | 45 | 539 | 437152813 | 437152300 | 8.290000e-119 | 438.0 |
39 | TraesCS3D01G220900 | chr4D | 83.610 | 482 | 48 | 13 | 4 | 462 | 43306023 | 43306496 | 2.320000e-114 | 424.0 |
40 | TraesCS3D01G220900 | chr2A | 84.050 | 558 | 61 | 15 | 4 | 539 | 620257511 | 620256960 | 4.820000e-141 | 512.0 |
41 | TraesCS3D01G220900 | chr2A | 76.761 | 284 | 37 | 17 | 6397 | 6653 | 504546816 | 504546535 | 1.580000e-26 | 132.0 |
42 | TraesCS3D01G220900 | chr6D | 84.107 | 560 | 56 | 17 | 5 | 539 | 157160628 | 157160077 | 1.730000e-140 | 510.0 |
43 | TraesCS3D01G220900 | chr6D | 91.089 | 303 | 24 | 3 | 6660 | 6962 | 38577389 | 38577688 | 2.340000e-109 | 407.0 |
44 | TraesCS3D01G220900 | chr6A | 83.519 | 540 | 73 | 13 | 6 | 539 | 57096621 | 57097150 | 2.260000e-134 | 490.0 |
45 | TraesCS3D01G220900 | chr1B | 83.304 | 563 | 63 | 12 | 1 | 539 | 25840777 | 25840222 | 2.260000e-134 | 490.0 |
46 | TraesCS3D01G220900 | chr1B | 82.440 | 541 | 71 | 19 | 6 | 539 | 689386188 | 689386711 | 1.070000e-122 | 451.0 |
47 | TraesCS3D01G220900 | chr1B | 88.372 | 86 | 4 | 5 | 6158 | 6238 | 491083484 | 491083400 | 1.600000e-16 | 99.0 |
48 | TraesCS3D01G220900 | chr1B | 85.106 | 94 | 6 | 5 | 6158 | 6245 | 491083400 | 491083491 | 9.620000e-14 | 89.8 |
49 | TraesCS3D01G220900 | chr2D | 83.394 | 554 | 62 | 15 | 9 | 539 | 563023191 | 563023737 | 2.920000e-133 | 486.0 |
50 | TraesCS3D01G220900 | chr2D | 75.610 | 287 | 41 | 17 | 6394 | 6653 | 372813173 | 372813457 | 1.590000e-21 | 115.0 |
51 | TraesCS3D01G220900 | chr2D | 87.778 | 90 | 5 | 4 | 6154 | 6238 | 101695509 | 101695421 | 4.440000e-17 | 100.0 |
52 | TraesCS3D01G220900 | chr7A | 83.184 | 559 | 64 | 17 | 4 | 539 | 224832394 | 224831843 | 1.050000e-132 | 484.0 |
53 | TraesCS3D01G220900 | chr4B | 92.739 | 303 | 22 | 0 | 6660 | 6962 | 625982940 | 625983242 | 8.290000e-119 | 438.0 |
54 | TraesCS3D01G220900 | chrUn | 93.515 | 293 | 17 | 1 | 6660 | 6952 | 96240641 | 96240351 | 1.070000e-117 | 435.0 |
55 | TraesCS3D01G220900 | chr2B | 77.003 | 287 | 37 | 17 | 6394 | 6653 | 442337633 | 442337917 | 3.390000e-28 | 137.0 |
56 | TraesCS3D01G220900 | chr2B | 97.222 | 36 | 1 | 0 | 540 | 575 | 548017584 | 548017549 | 2.100000e-05 | 62.1 |
57 | TraesCS3D01G220900 | chr2B | 94.872 | 39 | 0 | 2 | 537 | 574 | 772348728 | 772348765 | 7.540000e-05 | 60.2 |
58 | TraesCS3D01G220900 | chr2B | 90.698 | 43 | 2 | 2 | 540 | 582 | 141154228 | 141154268 | 1.000000e-03 | 56.5 |
59 | TraesCS3D01G220900 | chr6B | 100.000 | 34 | 0 | 0 | 540 | 573 | 696354048 | 696354015 | 5.830000e-06 | 63.9 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3D01G220900 | chr3D | 301439590 | 301446553 | 6963 | True | 12861.0 | 12861 | 100.000000 | 1 | 6964 | 1 | chr3D.!!$R3 | 6963 |
1 | TraesCS3D01G220900 | chr3D | 604298919 | 604299473 | 554 | False | 488.0 | 488 | 83.154000 | 2 | 539 | 1 | chr3D.!!$F2 | 537 |
2 | TraesCS3D01G220900 | chr3B | 419761421 | 419767522 | 6101 | False | 4822.0 | 8770 | 94.966000 | 557 | 6635 | 2 | chr3B.!!$F1 | 6078 |
3 | TraesCS3D01G220900 | chr3A | 433994436 | 434001408 | 6972 | False | 3200.0 | 5544 | 94.927667 | 566 | 6659 | 3 | chr3A.!!$F1 | 6093 |
4 | TraesCS3D01G220900 | chr3A | 409489616 | 409490152 | 536 | True | 394.0 | 394 | 80.470000 | 5 | 542 | 1 | chr3A.!!$R2 | 537 |
5 | TraesCS3D01G220900 | chr5B | 675080220 | 675082682 | 2462 | False | 2889.0 | 2889 | 87.844000 | 3071 | 5535 | 1 | chr5B.!!$F2 | 2464 |
6 | TraesCS3D01G220900 | chr5B | 674892251 | 674894712 | 2461 | False | 2859.0 | 2859 | 87.637000 | 3071 | 5534 | 1 | chr5B.!!$F1 | 2463 |
7 | TraesCS3D01G220900 | chr5B | 377132011 | 377132568 | 557 | True | 473.0 | 473 | 82.686000 | 1 | 542 | 1 | chr5B.!!$R1 | 541 |
8 | TraesCS3D01G220900 | chr7B | 624351128 | 624353578 | 2450 | False | 2876.0 | 2876 | 87.857000 | 3071 | 5521 | 1 | chr7B.!!$F2 | 2450 |
9 | TraesCS3D01G220900 | chr5D | 534637034 | 534639496 | 2462 | False | 2861.0 | 2861 | 87.652000 | 3071 | 5535 | 1 | chr5D.!!$F2 | 2464 |
10 | TraesCS3D01G220900 | chr5D | 534865051 | 534867499 | 2448 | False | 2828.0 | 2828 | 87.520000 | 3071 | 5519 | 1 | chr5D.!!$F3 | 2448 |
11 | TraesCS3D01G220900 | chr5D | 133375364 | 133375917 | 553 | False | 484.0 | 484 | 83.214000 | 5 | 539 | 1 | chr5D.!!$F1 | 534 |
12 | TraesCS3D01G220900 | chr7D | 568598504 | 568600954 | 2450 | False | 2843.0 | 2843 | 87.607000 | 3071 | 5521 | 1 | chr7D.!!$F1 | 2450 |
13 | TraesCS3D01G220900 | chr4A | 636684705 | 636687839 | 3134 | True | 1478.5 | 2822 | 85.533500 | 2086 | 5532 | 2 | chr4A.!!$R1 | 3446 |
14 | TraesCS3D01G220900 | chr1D | 10025406 | 10027771 | 2365 | False | 885.0 | 885 | 73.937000 | 3071 | 5412 | 1 | chr1D.!!$F1 | 2341 |
15 | TraesCS3D01G220900 | chr1A | 11719838 | 11721421 | 1583 | False | 802.0 | 802 | 76.379000 | 3071 | 4641 | 1 | chr1A.!!$F1 | 1570 |
16 | TraesCS3D01G220900 | chr4D | 506101640 | 506102194 | 554 | True | 520.0 | 520 | 84.258000 | 4 | 539 | 1 | chr4D.!!$R2 | 535 |
17 | TraesCS3D01G220900 | chr4D | 310011263 | 310011789 | 526 | False | 479.0 | 479 | 83.769000 | 27 | 539 | 1 | chr4D.!!$F2 | 512 |
18 | TraesCS3D01G220900 | chr4D | 437152300 | 437152813 | 513 | True | 438.0 | 438 | 82.819000 | 45 | 539 | 1 | chr4D.!!$R1 | 494 |
19 | TraesCS3D01G220900 | chr2A | 620256960 | 620257511 | 551 | True | 512.0 | 512 | 84.050000 | 4 | 539 | 1 | chr2A.!!$R2 | 535 |
20 | TraesCS3D01G220900 | chr6D | 157160077 | 157160628 | 551 | True | 510.0 | 510 | 84.107000 | 5 | 539 | 1 | chr6D.!!$R1 | 534 |
21 | TraesCS3D01G220900 | chr6A | 57096621 | 57097150 | 529 | False | 490.0 | 490 | 83.519000 | 6 | 539 | 1 | chr6A.!!$F1 | 533 |
22 | TraesCS3D01G220900 | chr1B | 25840222 | 25840777 | 555 | True | 490.0 | 490 | 83.304000 | 1 | 539 | 1 | chr1B.!!$R1 | 538 |
23 | TraesCS3D01G220900 | chr1B | 689386188 | 689386711 | 523 | False | 451.0 | 451 | 82.440000 | 6 | 539 | 1 | chr1B.!!$F2 | 533 |
24 | TraesCS3D01G220900 | chr2D | 563023191 | 563023737 | 546 | False | 486.0 | 486 | 83.394000 | 9 | 539 | 1 | chr2D.!!$F2 | 530 |
25 | TraesCS3D01G220900 | chr7A | 224831843 | 224832394 | 551 | True | 484.0 | 484 | 83.184000 | 4 | 539 | 1 | chr7A.!!$R1 | 535 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
402 | 438 | 0.107410 | AATCTCGCGGGCCAAACATA | 60.107 | 50.000 | 6.13 | 0.0 | 0.00 | 2.29 | F |
403 | 439 | 0.532862 | ATCTCGCGGGCCAAACATAG | 60.533 | 55.000 | 6.13 | 0.0 | 0.00 | 2.23 | F |
881 | 922 | 0.911769 | TTCCTTGGTGCAGATCGGAT | 59.088 | 50.000 | 0.00 | 0.0 | 0.00 | 4.18 | F |
1173 | 1219 | 1.065928 | CCCTGTAGATCGTCCGTGC | 59.934 | 63.158 | 0.00 | 0.0 | 0.00 | 5.34 | F |
1926 | 1980 | 1.067635 | ACCATGTCTGCCGAATTTTGC | 60.068 | 47.619 | 0.00 | 0.0 | 0.00 | 3.68 | F |
2000 | 2055 | 2.496070 | CCGAATCTGGTTAGGACTGTCA | 59.504 | 50.000 | 10.38 | 0.0 | 34.78 | 3.58 | F |
3173 | 4552 | 1.783711 | GATACTCGTGCAGATGAAGCG | 59.216 | 52.381 | 0.00 | 0.0 | 33.85 | 4.68 | F |
4172 | 5578 | 0.239879 | GATTCTTTGCGTTTGGCCGA | 59.760 | 50.000 | 0.00 | 0.0 | 42.61 | 5.54 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2309 | 2368 | 1.209128 | AGAGACAACACGAACAAGCG | 58.791 | 50.000 | 0.00 | 0.00 | 37.29 | 4.68 | R |
2320 | 2379 | 7.016361 | ACTGTTCATACAAACAAGAGACAAC | 57.984 | 36.000 | 0.00 | 0.00 | 38.60 | 3.32 | R |
2607 | 3598 | 4.795278 | GTGCACAATCATGTTTAAGCTAGC | 59.205 | 41.667 | 13.17 | 6.62 | 37.82 | 3.42 | R |
3065 | 4060 | 1.202582 | AGCGTAGACTTGCCTGTAGTG | 59.797 | 52.381 | 0.00 | 0.00 | 0.00 | 2.74 | R |
3069 | 4064 | 1.893801 | AGTAAGCGTAGACTTGCCTGT | 59.106 | 47.619 | 0.00 | 0.00 | 33.23 | 4.00 | R |
3694 | 5100 | 4.098501 | CCCAAAGCCTCTCCATCATTTTAC | 59.901 | 45.833 | 0.00 | 0.00 | 0.00 | 2.01 | R |
5069 | 6475 | 1.072965 | CCTCCCCTGTGAATAGCATCC | 59.927 | 57.143 | 0.00 | 0.00 | 0.00 | 3.51 | R |
6051 | 7462 | 1.067916 | GCCCAGGTTGCACTTTGTG | 59.932 | 57.895 | 0.00 | 0.00 | 36.51 | 3.33 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
76 | 77 | 8.291888 | TCACAAATTCAAAATAATGTTCGTGG | 57.708 | 30.769 | 0.00 | 0.00 | 0.00 | 4.94 |
179 | 183 | 8.062065 | TGATGTTTCTTTATCCGCCTTAAAAT | 57.938 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
180 | 184 | 7.973388 | TGATGTTTCTTTATCCGCCTTAAAATG | 59.027 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
381 | 417 | 3.117016 | TCCGACCAACCCCACTACTATAT | 60.117 | 47.826 | 0.00 | 0.00 | 0.00 | 0.86 |
382 | 418 | 3.644738 | CCGACCAACCCCACTACTATATT | 59.355 | 47.826 | 0.00 | 0.00 | 0.00 | 1.28 |
383 | 419 | 4.834496 | CCGACCAACCCCACTACTATATTA | 59.166 | 45.833 | 0.00 | 0.00 | 0.00 | 0.98 |
402 | 438 | 0.107410 | AATCTCGCGGGCCAAACATA | 60.107 | 50.000 | 6.13 | 0.00 | 0.00 | 2.29 |
403 | 439 | 0.532862 | ATCTCGCGGGCCAAACATAG | 60.533 | 55.000 | 6.13 | 0.00 | 0.00 | 2.23 |
433 | 470 | 6.183360 | CGAGAACACTACAACTCTCTACTCTC | 60.183 | 46.154 | 0.00 | 0.00 | 33.58 | 3.20 |
558 | 599 | 6.370593 | TGCTAATGCAGACTAAAAAGAAACG | 58.629 | 36.000 | 0.00 | 0.00 | 45.31 | 3.60 |
559 | 600 | 5.795441 | GCTAATGCAGACTAAAAAGAAACGG | 59.205 | 40.000 | 0.00 | 0.00 | 39.41 | 4.44 |
560 | 601 | 6.348213 | GCTAATGCAGACTAAAAAGAAACGGA | 60.348 | 38.462 | 0.00 | 0.00 | 39.41 | 4.69 |
561 | 602 | 5.613358 | ATGCAGACTAAAAAGAAACGGAG | 57.387 | 39.130 | 0.00 | 0.00 | 0.00 | 4.63 |
562 | 603 | 3.813166 | TGCAGACTAAAAAGAAACGGAGG | 59.187 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
563 | 604 | 3.188667 | GCAGACTAAAAAGAAACGGAGGG | 59.811 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
564 | 605 | 4.638304 | CAGACTAAAAAGAAACGGAGGGA | 58.362 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
585 | 626 | 6.385467 | AGGGAGTATCATTTAGAGCTTCTGTT | 59.615 | 38.462 | 0.00 | 0.00 | 36.25 | 3.16 |
614 | 655 | 7.834068 | TGTTCATAGTAGAGCAGATTTGTTC | 57.166 | 36.000 | 0.00 | 0.00 | 35.03 | 3.18 |
672 | 713 | 1.269413 | ACGACTTGTCCACACTAACCG | 60.269 | 52.381 | 0.00 | 0.00 | 0.00 | 4.44 |
788 | 829 | 4.569564 | CACTATACGTAAGGGCCAAGTTTC | 59.430 | 45.833 | 6.18 | 0.00 | 46.39 | 2.78 |
860 | 901 | 2.910688 | GGGCATTCTCCGAACTATCA | 57.089 | 50.000 | 0.00 | 0.00 | 0.00 | 2.15 |
881 | 922 | 0.911769 | TTCCTTGGTGCAGATCGGAT | 59.088 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
920 | 961 | 2.183300 | GCACGGACAGCCACGATA | 59.817 | 61.111 | 0.00 | 0.00 | 0.00 | 2.92 |
955 | 996 | 2.509336 | GCGCCGTCACTATGCAGT | 60.509 | 61.111 | 0.00 | 0.00 | 34.42 | 4.40 |
1101 | 1147 | 3.069443 | GTCCTCATCTCATTCCTCCTGAC | 59.931 | 52.174 | 0.00 | 0.00 | 0.00 | 3.51 |
1110 | 1156 | 2.363018 | CCTCCTGACAGCGAGGGA | 60.363 | 66.667 | 22.79 | 6.24 | 41.79 | 4.20 |
1173 | 1219 | 1.065928 | CCCTGTAGATCGTCCGTGC | 59.934 | 63.158 | 0.00 | 0.00 | 0.00 | 5.34 |
1175 | 1221 | 1.939785 | CTGTAGATCGTCCGTGCGC | 60.940 | 63.158 | 0.00 | 0.00 | 0.00 | 6.09 |
1178 | 1224 | 2.110352 | TAGATCGTCCGTGCGCTGA | 61.110 | 57.895 | 9.73 | 0.00 | 0.00 | 4.26 |
1179 | 1225 | 2.319011 | TAGATCGTCCGTGCGCTGAC | 62.319 | 60.000 | 9.73 | 11.38 | 0.00 | 3.51 |
1180 | 1226 | 4.796231 | ATCGTCCGTGCGCTGACC | 62.796 | 66.667 | 15.05 | 0.00 | 0.00 | 4.02 |
1304 | 1350 | 6.071896 | TGCCGATCTAATTCTGGTAGATGTAG | 60.072 | 42.308 | 0.00 | 0.00 | 38.22 | 2.74 |
1313 | 1359 | 8.494016 | AATTCTGGTAGATGTAGCTTTTGTAC | 57.506 | 34.615 | 0.00 | 0.00 | 0.00 | 2.90 |
1323 | 1369 | 4.884744 | TGTAGCTTTTGTACCACACAACAT | 59.115 | 37.500 | 0.00 | 0.00 | 46.80 | 2.71 |
1511 | 1561 | 2.736682 | CGCAGGGCCGTAAGTTTCG | 61.737 | 63.158 | 0.00 | 0.00 | 0.00 | 3.46 |
1779 | 1831 | 5.673337 | TGTGTTGCAGTCTAAAGTTCATC | 57.327 | 39.130 | 0.00 | 0.00 | 0.00 | 2.92 |
1798 | 1850 | 7.538678 | AGTTCATCATTCTGCGAAATGTTTAAC | 59.461 | 33.333 | 9.81 | 9.39 | 37.77 | 2.01 |
1816 | 1868 | 9.667989 | ATGTTTAACGTTACAACATTTACCTTC | 57.332 | 29.630 | 25.98 | 4.28 | 37.79 | 3.46 |
1880 | 1932 | 7.003482 | TGGCTTGCATTATATTGATGTCCTTA | 58.997 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
1926 | 1980 | 1.067635 | ACCATGTCTGCCGAATTTTGC | 60.068 | 47.619 | 0.00 | 0.00 | 0.00 | 3.68 |
1964 | 2019 | 6.159988 | GCTTACCTCTGGCACTTATGTATAG | 58.840 | 44.000 | 0.00 | 0.00 | 0.00 | 1.31 |
1981 | 2036 | 6.570672 | TGTATAGAAACATAGGAGCTACCG | 57.429 | 41.667 | 0.00 | 0.00 | 44.74 | 4.02 |
1998 | 2053 | 2.537143 | ACCGAATCTGGTTAGGACTGT | 58.463 | 47.619 | 6.82 | 0.00 | 39.99 | 3.55 |
1999 | 2054 | 2.496470 | ACCGAATCTGGTTAGGACTGTC | 59.504 | 50.000 | 6.82 | 0.00 | 39.99 | 3.51 |
2000 | 2055 | 2.496070 | CCGAATCTGGTTAGGACTGTCA | 59.504 | 50.000 | 10.38 | 0.00 | 34.78 | 3.58 |
2001 | 2056 | 3.056107 | CCGAATCTGGTTAGGACTGTCAA | 60.056 | 47.826 | 10.38 | 0.00 | 34.78 | 3.18 |
2013 | 2072 | 5.762179 | AGGACTGTCAATCATTTCTACCA | 57.238 | 39.130 | 10.38 | 0.00 | 0.00 | 3.25 |
2309 | 2368 | 4.867086 | TCTATGGGGGTTGATCCTTTTTC | 58.133 | 43.478 | 0.00 | 0.00 | 36.25 | 2.29 |
2320 | 2379 | 2.748461 | TCCTTTTTCGCTTGTTCGTG | 57.252 | 45.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2403 | 2462 | 8.615211 | CACAGCATAGCTTGTTTATATTTCTGA | 58.385 | 33.333 | 0.00 | 0.00 | 36.40 | 3.27 |
2642 | 3633 | 7.362662 | ACATGATTGTGCACAGTAAAGTAAAG | 58.637 | 34.615 | 20.59 | 6.37 | 33.85 | 1.85 |
2706 | 3697 | 7.805163 | TCTGATCATCCAGGATTTAAAGCTAA | 58.195 | 34.615 | 0.00 | 0.00 | 34.99 | 3.09 |
2742 | 3733 | 9.403583 | GTCCTGAAGTAAATGGGTGATTATTTA | 57.596 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2861 | 3852 | 9.364989 | TCTCTCCTGTTTGTTTTTGTTTTAATG | 57.635 | 29.630 | 0.00 | 0.00 | 0.00 | 1.90 |
2930 | 3921 | 6.206634 | TCTGAATTCCAACATTTGTGTACTCC | 59.793 | 38.462 | 2.27 | 0.00 | 0.00 | 3.85 |
2937 | 3928 | 5.163353 | CCAACATTTGTGTACTCCCCTTTTT | 60.163 | 40.000 | 0.00 | 0.00 | 0.00 | 1.94 |
2983 | 3974 | 5.236478 | GCTCTATCTTTATGGCGTTTTAGCA | 59.764 | 40.000 | 0.00 | 0.00 | 39.27 | 3.49 |
3019 | 4010 | 8.251750 | TGTTCAATATTAAGAGTGTGCACTAC | 57.748 | 34.615 | 19.41 | 14.16 | 42.66 | 2.73 |
3020 | 4011 | 8.094548 | TGTTCAATATTAAGAGTGTGCACTACT | 58.905 | 33.333 | 19.41 | 18.59 | 42.66 | 2.57 |
3021 | 4012 | 8.383619 | GTTCAATATTAAGAGTGTGCACTACTG | 58.616 | 37.037 | 21.48 | 4.13 | 42.66 | 2.74 |
3032 | 4023 | 5.874810 | AGTGTGCACTACTGGTAATTACATG | 59.125 | 40.000 | 19.41 | 10.91 | 40.43 | 3.21 |
3041 | 4036 | 8.946085 | ACTACTGGTAATTACATGTCATGTTTG | 58.054 | 33.333 | 23.05 | 6.17 | 41.63 | 2.93 |
3047 | 4042 | 4.740741 | TTACATGTCATGTTTGTGACCG | 57.259 | 40.909 | 23.05 | 0.00 | 46.17 | 4.79 |
3065 | 4060 | 4.273969 | TGACCGTGTTCATGGTTTTAACTC | 59.726 | 41.667 | 16.42 | 4.52 | 38.99 | 3.01 |
3068 | 4063 | 4.274950 | CCGTGTTCATGGTTTTAACTCACT | 59.725 | 41.667 | 3.13 | 0.00 | 0.00 | 3.41 |
3069 | 4064 | 5.467399 | CCGTGTTCATGGTTTTAACTCACTA | 59.533 | 40.000 | 3.13 | 0.00 | 0.00 | 2.74 |
3173 | 4552 | 1.783711 | GATACTCGTGCAGATGAAGCG | 59.216 | 52.381 | 0.00 | 0.00 | 33.85 | 4.68 |
4172 | 5578 | 0.239879 | GATTCTTTGCGTTTGGCCGA | 59.760 | 50.000 | 0.00 | 0.00 | 42.61 | 5.54 |
4355 | 5761 | 1.202348 | GTTGCTATGGTTGGCTTGGAC | 59.798 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
4685 | 6091 | 0.596577 | TCTCTTTCCGTGAGACCGTG | 59.403 | 55.000 | 0.00 | 0.00 | 35.86 | 4.94 |
4955 | 6361 | 4.081642 | TGCAAGGGAGTACAGTATCTGAAC | 60.082 | 45.833 | 3.70 | 0.00 | 35.18 | 3.18 |
5051 | 6457 | 2.819608 | TGGTATTTGCTTTGAGGTCTGC | 59.180 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 |
5069 | 6475 | 1.844003 | CGACGTTGTTCTCCACACG | 59.156 | 57.895 | 0.00 | 0.00 | 33.98 | 4.49 |
5087 | 6493 | 0.758734 | CGGATGCTATTCACAGGGGA | 59.241 | 55.000 | 0.00 | 0.00 | 0.00 | 4.81 |
5524 | 6933 | 5.772169 | AGGACAAGCTCTAAATTTTTGCTCT | 59.228 | 36.000 | 11.00 | 4.02 | 33.10 | 4.09 |
5543 | 6952 | 6.442112 | TGCTCTCATGTTATCTGTTATCTCG | 58.558 | 40.000 | 0.00 | 0.00 | 0.00 | 4.04 |
5561 | 6970 | 6.966534 | ATCTCGGCCAATTTTTGATCTATT | 57.033 | 33.333 | 2.24 | 0.00 | 0.00 | 1.73 |
5621 | 7030 | 2.099405 | AGTTCCTTGGGTTGTGTTGTG | 58.901 | 47.619 | 0.00 | 0.00 | 0.00 | 3.33 |
5759 | 7170 | 4.985538 | TCTTATGTTTGAGAACCTTGGCT | 58.014 | 39.130 | 0.00 | 0.00 | 34.80 | 4.75 |
5767 | 7178 | 5.767816 | TTGAGAACCTTGGCTAGTTTTTC | 57.232 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
5791 | 7202 | 5.327091 | CAATGTTTCCTTGCGTCTGATAAG | 58.673 | 41.667 | 0.00 | 0.00 | 0.00 | 1.73 |
5792 | 7203 | 4.265904 | TGTTTCCTTGCGTCTGATAAGA | 57.734 | 40.909 | 0.00 | 0.00 | 0.00 | 2.10 |
5793 | 7204 | 3.994392 | TGTTTCCTTGCGTCTGATAAGAC | 59.006 | 43.478 | 0.00 | 0.00 | 35.59 | 3.01 |
5912 | 7323 | 5.931532 | ACGCTCATTGATTCTGTTTGTAAG | 58.068 | 37.500 | 0.00 | 0.00 | 0.00 | 2.34 |
5977 | 7388 | 5.606505 | TGCAATGAGAAACACTGTACACTA | 58.393 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
6051 | 7462 | 9.199982 | CCATAAAATACATCAGCATTCCAATTC | 57.800 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
6120 | 7563 | 1.352017 | ACATTGTCCATGTGCTCTGGA | 59.648 | 47.619 | 0.00 | 3.71 | 45.12 | 3.86 |
6322 | 7779 | 7.781548 | ATGCAATTGAAATAGCAAATCTTCC | 57.218 | 32.000 | 10.34 | 0.00 | 40.76 | 3.46 |
6378 | 7835 | 6.542005 | TGATTTTAAACTCTTGACTGCACTCA | 59.458 | 34.615 | 7.05 | 0.00 | 0.00 | 3.41 |
6437 | 7894 | 7.065563 | GTCTGACAGAAGCATAAGAAATGTGAT | 59.934 | 37.037 | 6.76 | 0.00 | 0.00 | 3.06 |
6523 | 7980 | 5.353678 | GTCAAGATGAAAGGGAGAGTGATTG | 59.646 | 44.000 | 0.00 | 0.00 | 0.00 | 2.67 |
6631 | 8089 | 2.044551 | CCCTGCTCCCTTTCTGCC | 60.045 | 66.667 | 0.00 | 0.00 | 0.00 | 4.85 |
6659 | 8117 | 8.565896 | TGTGCATGAACTTGACTCTTATTATT | 57.434 | 30.769 | 5.18 | 0.00 | 0.00 | 1.40 |
6660 | 8118 | 8.453320 | TGTGCATGAACTTGACTCTTATTATTG | 58.547 | 33.333 | 5.18 | 0.00 | 0.00 | 1.90 |
6661 | 8119 | 8.454106 | GTGCATGAACTTGACTCTTATTATTGT | 58.546 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
6662 | 8120 | 9.013229 | TGCATGAACTTGACTCTTATTATTGTT | 57.987 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
6692 | 8150 | 8.630917 | TGTATATAGTCTCTCTTGCACTTTACC | 58.369 | 37.037 | 0.00 | 0.00 | 0.00 | 2.85 |
6693 | 8151 | 7.661536 | ATATAGTCTCTCTTGCACTTTACCA | 57.338 | 36.000 | 0.00 | 0.00 | 0.00 | 3.25 |
6694 | 8152 | 4.899352 | AGTCTCTCTTGCACTTTACCAT | 57.101 | 40.909 | 0.00 | 0.00 | 0.00 | 3.55 |
6695 | 8153 | 7.661536 | ATAGTCTCTCTTGCACTTTACCATA | 57.338 | 36.000 | 0.00 | 0.00 | 0.00 | 2.74 |
6696 | 8154 | 5.725362 | AGTCTCTCTTGCACTTTACCATAC | 58.275 | 41.667 | 0.00 | 0.00 | 0.00 | 2.39 |
6697 | 8155 | 5.246203 | AGTCTCTCTTGCACTTTACCATACA | 59.754 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
6698 | 8156 | 6.070538 | AGTCTCTCTTGCACTTTACCATACAT | 60.071 | 38.462 | 0.00 | 0.00 | 0.00 | 2.29 |
6699 | 8157 | 7.124298 | AGTCTCTCTTGCACTTTACCATACATA | 59.876 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
6700 | 8158 | 7.928706 | GTCTCTCTTGCACTTTACCATACATAT | 59.071 | 37.037 | 0.00 | 0.00 | 0.00 | 1.78 |
6701 | 8159 | 7.928167 | TCTCTCTTGCACTTTACCATACATATG | 59.072 | 37.037 | 0.00 | 0.00 | 0.00 | 1.78 |
6702 | 8160 | 6.483307 | TCTCTTGCACTTTACCATACATATGC | 59.517 | 38.462 | 1.58 | 0.00 | 32.40 | 3.14 |
6703 | 8161 | 6.118852 | TCTTGCACTTTACCATACATATGCA | 58.881 | 36.000 | 1.58 | 0.00 | 39.90 | 3.96 |
6704 | 8162 | 6.772233 | TCTTGCACTTTACCATACATATGCAT | 59.228 | 34.615 | 3.79 | 3.79 | 41.13 | 3.96 |
6705 | 8163 | 7.936301 | TCTTGCACTTTACCATACATATGCATA | 59.064 | 33.333 | 9.27 | 9.27 | 41.13 | 3.14 |
6706 | 8164 | 8.634335 | TTGCACTTTACCATACATATGCATAT | 57.366 | 30.769 | 13.63 | 13.63 | 41.13 | 1.78 |
6707 | 8165 | 8.042944 | TGCACTTTACCATACATATGCATATG | 57.957 | 34.615 | 34.80 | 34.80 | 44.37 | 1.78 |
6717 | 8175 | 4.226427 | CATATGCATATGTACTGGCCCT | 57.774 | 45.455 | 30.55 | 0.76 | 36.31 | 5.19 |
6718 | 8176 | 4.592942 | CATATGCATATGTACTGGCCCTT | 58.407 | 43.478 | 30.55 | 0.57 | 36.31 | 3.95 |
6719 | 8177 | 2.346766 | TGCATATGTACTGGCCCTTG | 57.653 | 50.000 | 0.00 | 0.00 | 0.00 | 3.61 |
6720 | 8178 | 1.133823 | TGCATATGTACTGGCCCTTGG | 60.134 | 52.381 | 0.00 | 0.00 | 0.00 | 3.61 |
6730 | 8188 | 4.748144 | GCCCTTGGCCCTCCTGTG | 62.748 | 72.222 | 0.00 | 0.00 | 44.06 | 3.66 |
6731 | 8189 | 2.935481 | CCCTTGGCCCTCCTGTGA | 60.935 | 66.667 | 0.00 | 0.00 | 0.00 | 3.58 |
6732 | 8190 | 2.538141 | CCCTTGGCCCTCCTGTGAA | 61.538 | 63.158 | 0.00 | 0.00 | 0.00 | 3.18 |
6733 | 8191 | 1.693640 | CCTTGGCCCTCCTGTGAAT | 59.306 | 57.895 | 0.00 | 0.00 | 0.00 | 2.57 |
6734 | 8192 | 0.682209 | CCTTGGCCCTCCTGTGAATG | 60.682 | 60.000 | 0.00 | 0.00 | 0.00 | 2.67 |
6735 | 8193 | 1.304381 | TTGGCCCTCCTGTGAATGC | 60.304 | 57.895 | 0.00 | 0.00 | 0.00 | 3.56 |
6736 | 8194 | 2.079088 | TTGGCCCTCCTGTGAATGCA | 62.079 | 55.000 | 0.00 | 0.00 | 0.00 | 3.96 |
6737 | 8195 | 1.751927 | GGCCCTCCTGTGAATGCAG | 60.752 | 63.158 | 0.00 | 0.00 | 36.31 | 4.41 |
6738 | 8196 | 1.001641 | GCCCTCCTGTGAATGCAGT | 60.002 | 57.895 | 0.00 | 0.00 | 34.84 | 4.40 |
6739 | 8197 | 0.610232 | GCCCTCCTGTGAATGCAGTT | 60.610 | 55.000 | 0.00 | 0.00 | 34.84 | 3.16 |
6740 | 8198 | 1.171308 | CCCTCCTGTGAATGCAGTTG | 58.829 | 55.000 | 0.00 | 0.00 | 34.84 | 3.16 |
6741 | 8199 | 0.524862 | CCTCCTGTGAATGCAGTTGC | 59.475 | 55.000 | 0.00 | 0.00 | 42.50 | 4.17 |
6742 | 8200 | 0.524862 | CTCCTGTGAATGCAGTTGCC | 59.475 | 55.000 | 1.06 | 0.00 | 41.18 | 4.52 |
6743 | 8201 | 0.895100 | TCCTGTGAATGCAGTTGCCC | 60.895 | 55.000 | 1.06 | 0.00 | 41.18 | 5.36 |
6744 | 8202 | 1.180456 | CCTGTGAATGCAGTTGCCCA | 61.180 | 55.000 | 1.06 | 0.00 | 41.18 | 5.36 |
6745 | 8203 | 0.892755 | CTGTGAATGCAGTTGCCCAT | 59.107 | 50.000 | 1.06 | 0.00 | 41.18 | 4.00 |
6746 | 8204 | 1.274167 | CTGTGAATGCAGTTGCCCATT | 59.726 | 47.619 | 1.06 | 0.00 | 41.18 | 3.16 |
6747 | 8205 | 1.273048 | TGTGAATGCAGTTGCCCATTC | 59.727 | 47.619 | 1.06 | 6.03 | 44.64 | 2.67 |
6748 | 8206 | 0.896923 | TGAATGCAGTTGCCCATTCC | 59.103 | 50.000 | 12.06 | 0.36 | 44.08 | 3.01 |
6749 | 8207 | 1.188863 | GAATGCAGTTGCCCATTCCT | 58.811 | 50.000 | 1.06 | 0.00 | 40.73 | 3.36 |
6750 | 8208 | 2.291475 | TGAATGCAGTTGCCCATTCCTA | 60.291 | 45.455 | 12.06 | 0.00 | 44.08 | 2.94 |
6751 | 8209 | 2.530460 | ATGCAGTTGCCCATTCCTAA | 57.470 | 45.000 | 1.06 | 0.00 | 41.18 | 2.69 |
6752 | 8210 | 1.544724 | TGCAGTTGCCCATTCCTAAC | 58.455 | 50.000 | 1.06 | 0.00 | 41.18 | 2.34 |
6753 | 8211 | 1.202989 | TGCAGTTGCCCATTCCTAACA | 60.203 | 47.619 | 1.06 | 0.00 | 41.18 | 2.41 |
6754 | 8212 | 2.102578 | GCAGTTGCCCATTCCTAACAT | 58.897 | 47.619 | 0.00 | 0.00 | 34.31 | 2.71 |
6755 | 8213 | 2.159198 | GCAGTTGCCCATTCCTAACATG | 60.159 | 50.000 | 0.00 | 0.00 | 34.31 | 3.21 |
6756 | 8214 | 2.428171 | CAGTTGCCCATTCCTAACATGG | 59.572 | 50.000 | 0.00 | 0.00 | 41.02 | 3.66 |
6757 | 8215 | 2.042979 | AGTTGCCCATTCCTAACATGGT | 59.957 | 45.455 | 0.00 | 0.00 | 39.86 | 3.55 |
6758 | 8216 | 3.268334 | AGTTGCCCATTCCTAACATGGTA | 59.732 | 43.478 | 0.00 | 0.00 | 39.86 | 3.25 |
6759 | 8217 | 4.079212 | AGTTGCCCATTCCTAACATGGTAT | 60.079 | 41.667 | 0.00 | 0.00 | 39.86 | 2.73 |
6760 | 8218 | 4.098914 | TGCCCATTCCTAACATGGTATC | 57.901 | 45.455 | 0.00 | 0.00 | 39.86 | 2.24 |
6761 | 8219 | 3.461458 | TGCCCATTCCTAACATGGTATCA | 59.539 | 43.478 | 0.00 | 0.00 | 39.86 | 2.15 |
6762 | 8220 | 4.074970 | GCCCATTCCTAACATGGTATCAG | 58.925 | 47.826 | 0.00 | 0.00 | 39.86 | 2.90 |
6763 | 8221 | 4.202461 | GCCCATTCCTAACATGGTATCAGA | 60.202 | 45.833 | 0.00 | 0.00 | 39.86 | 3.27 |
6764 | 8222 | 5.515534 | GCCCATTCCTAACATGGTATCAGAT | 60.516 | 44.000 | 0.00 | 0.00 | 39.86 | 2.90 |
6765 | 8223 | 5.942236 | CCCATTCCTAACATGGTATCAGATG | 59.058 | 44.000 | 0.00 | 0.00 | 39.86 | 2.90 |
6766 | 8224 | 5.413833 | CCATTCCTAACATGGTATCAGATGC | 59.586 | 44.000 | 0.00 | 0.00 | 37.07 | 3.91 |
6767 | 8225 | 5.894298 | TTCCTAACATGGTATCAGATGCT | 57.106 | 39.130 | 0.00 | 0.00 | 0.00 | 3.79 |
6768 | 8226 | 5.894298 | TCCTAACATGGTATCAGATGCTT | 57.106 | 39.130 | 0.00 | 0.00 | 0.00 | 3.91 |
6769 | 8227 | 6.994421 | TCCTAACATGGTATCAGATGCTTA | 57.006 | 37.500 | 0.00 | 0.00 | 0.00 | 3.09 |
6770 | 8228 | 6.997655 | TCCTAACATGGTATCAGATGCTTAG | 58.002 | 40.000 | 0.00 | 0.00 | 0.00 | 2.18 |
6771 | 8229 | 6.014242 | TCCTAACATGGTATCAGATGCTTAGG | 60.014 | 42.308 | 13.79 | 13.79 | 36.25 | 2.69 |
6772 | 8230 | 5.636903 | AACATGGTATCAGATGCTTAGGT | 57.363 | 39.130 | 0.00 | 0.00 | 0.00 | 3.08 |
6773 | 8231 | 5.636903 | ACATGGTATCAGATGCTTAGGTT | 57.363 | 39.130 | 0.00 | 0.00 | 0.00 | 3.50 |
6774 | 8232 | 5.615289 | ACATGGTATCAGATGCTTAGGTTC | 58.385 | 41.667 | 0.00 | 0.00 | 0.00 | 3.62 |
6775 | 8233 | 4.689612 | TGGTATCAGATGCTTAGGTTCC | 57.310 | 45.455 | 0.00 | 0.00 | 0.00 | 3.62 |
6776 | 8234 | 4.298626 | TGGTATCAGATGCTTAGGTTCCT | 58.701 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
6777 | 8235 | 4.345257 | TGGTATCAGATGCTTAGGTTCCTC | 59.655 | 45.833 | 0.00 | 0.00 | 0.00 | 3.71 |
6778 | 8236 | 4.591072 | GGTATCAGATGCTTAGGTTCCTCT | 59.409 | 45.833 | 0.00 | 0.00 | 0.00 | 3.69 |
6779 | 8237 | 4.953940 | ATCAGATGCTTAGGTTCCTCTC | 57.046 | 45.455 | 0.00 | 0.00 | 0.00 | 3.20 |
6780 | 8238 | 3.034635 | TCAGATGCTTAGGTTCCTCTCC | 58.965 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
6781 | 8239 | 3.037549 | CAGATGCTTAGGTTCCTCTCCT | 58.962 | 50.000 | 0.00 | 0.00 | 38.91 | 3.69 |
6782 | 8240 | 3.037549 | AGATGCTTAGGTTCCTCTCCTG | 58.962 | 50.000 | 0.00 | 0.00 | 36.60 | 3.86 |
6783 | 8241 | 0.905357 | TGCTTAGGTTCCTCTCCTGC | 59.095 | 55.000 | 0.00 | 0.00 | 36.60 | 4.85 |
6784 | 8242 | 1.199615 | GCTTAGGTTCCTCTCCTGCT | 58.800 | 55.000 | 0.00 | 0.00 | 36.60 | 4.24 |
6785 | 8243 | 1.138069 | GCTTAGGTTCCTCTCCTGCTC | 59.862 | 57.143 | 0.00 | 0.00 | 36.60 | 4.26 |
6786 | 8244 | 1.760029 | CTTAGGTTCCTCTCCTGCTCC | 59.240 | 57.143 | 0.00 | 0.00 | 36.60 | 4.70 |
6787 | 8245 | 0.032017 | TAGGTTCCTCTCCTGCTCCC | 60.032 | 60.000 | 0.00 | 0.00 | 36.60 | 4.30 |
6788 | 8246 | 2.726351 | GGTTCCTCTCCTGCTCCCG | 61.726 | 68.421 | 0.00 | 0.00 | 0.00 | 5.14 |
6789 | 8247 | 3.077556 | TTCCTCTCCTGCTCCCGC | 61.078 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
6790 | 8248 | 3.905153 | TTCCTCTCCTGCTCCCGCA | 62.905 | 63.158 | 0.00 | 0.00 | 45.60 | 5.69 |
6791 | 8249 | 3.160047 | CCTCTCCTGCTCCCGCAT | 61.160 | 66.667 | 0.00 | 0.00 | 46.74 | 4.73 |
6792 | 8250 | 2.108566 | CTCTCCTGCTCCCGCATG | 59.891 | 66.667 | 0.00 | 0.00 | 46.74 | 4.06 |
6793 | 8251 | 4.166888 | TCTCCTGCTCCCGCATGC | 62.167 | 66.667 | 7.91 | 7.91 | 46.74 | 4.06 |
6794 | 8252 | 4.172512 | CTCCTGCTCCCGCATGCT | 62.173 | 66.667 | 17.13 | 0.00 | 46.74 | 3.79 |
6795 | 8253 | 4.166888 | TCCTGCTCCCGCATGCTC | 62.167 | 66.667 | 17.13 | 0.17 | 46.74 | 4.26 |
6839 | 8297 | 4.862823 | GCCGGCCTCCCTCTACCT | 62.863 | 72.222 | 18.11 | 0.00 | 0.00 | 3.08 |
6840 | 8298 | 2.522193 | CCGGCCTCCCTCTACCTC | 60.522 | 72.222 | 0.00 | 0.00 | 0.00 | 3.85 |
6841 | 8299 | 2.907917 | CGGCCTCCCTCTACCTCG | 60.908 | 72.222 | 0.00 | 0.00 | 0.00 | 4.63 |
6842 | 8300 | 2.279408 | GGCCTCCCTCTACCTCGT | 59.721 | 66.667 | 0.00 | 0.00 | 0.00 | 4.18 |
6843 | 8301 | 1.829096 | GGCCTCCCTCTACCTCGTC | 60.829 | 68.421 | 0.00 | 0.00 | 0.00 | 4.20 |
6844 | 8302 | 2.188161 | GCCTCCCTCTACCTCGTCG | 61.188 | 68.421 | 0.00 | 0.00 | 0.00 | 5.12 |
6845 | 8303 | 2.188161 | CCTCCCTCTACCTCGTCGC | 61.188 | 68.421 | 0.00 | 0.00 | 0.00 | 5.19 |
6846 | 8304 | 2.124403 | TCCCTCTACCTCGTCGCC | 60.124 | 66.667 | 0.00 | 0.00 | 0.00 | 5.54 |
6847 | 8305 | 3.584052 | CCCTCTACCTCGTCGCCG | 61.584 | 72.222 | 0.00 | 0.00 | 0.00 | 6.46 |
6848 | 8306 | 3.584052 | CCTCTACCTCGTCGCCGG | 61.584 | 72.222 | 0.00 | 0.00 | 33.95 | 6.13 |
6849 | 8307 | 4.253257 | CTCTACCTCGTCGCCGGC | 62.253 | 72.222 | 19.07 | 19.07 | 33.95 | 6.13 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
154 | 156 | 7.455641 | TTTTAAGGCGGATAAAGAAACATCA | 57.544 | 32.000 | 0.00 | 0.00 | 0.00 | 3.07 |
155 | 157 | 7.973944 | ACATTTTAAGGCGGATAAAGAAACATC | 59.026 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
162 | 165 | 6.751888 | CAGGAAACATTTTAAGGCGGATAAAG | 59.248 | 38.462 | 0.00 | 0.00 | 0.00 | 1.85 |
166 | 169 | 4.086457 | ACAGGAAACATTTTAAGGCGGAT | 58.914 | 39.130 | 0.00 | 0.00 | 0.00 | 4.18 |
179 | 183 | 7.513968 | CAAACATTTTTCGAAAACAGGAAACA | 58.486 | 30.769 | 22.41 | 6.35 | 32.30 | 2.83 |
180 | 184 | 6.464519 | GCAAACATTTTTCGAAAACAGGAAAC | 59.535 | 34.615 | 22.41 | 7.54 | 32.30 | 2.78 |
273 | 306 | 3.008594 | TGGCGACCTCCTGATTTTTCTTA | 59.991 | 43.478 | 0.00 | 0.00 | 0.00 | 2.10 |
292 | 325 | 0.951040 | CTCCTTGTCGAGGTTGTGGC | 60.951 | 60.000 | 6.00 | 0.00 | 46.39 | 5.01 |
320 | 353 | 5.163652 | CCAACTCGTGTCTTTTCTTTCCTTT | 60.164 | 40.000 | 0.00 | 0.00 | 0.00 | 3.11 |
328 | 364 | 3.493503 | CACTACCCAACTCGTGTCTTTTC | 59.506 | 47.826 | 0.00 | 0.00 | 0.00 | 2.29 |
381 | 417 | 0.321741 | TGTTTGGCCCGCGAGATTAA | 60.322 | 50.000 | 8.23 | 0.00 | 0.00 | 1.40 |
382 | 418 | 0.107410 | ATGTTTGGCCCGCGAGATTA | 60.107 | 50.000 | 8.23 | 0.00 | 0.00 | 1.75 |
383 | 419 | 0.107410 | TATGTTTGGCCCGCGAGATT | 60.107 | 50.000 | 8.23 | 0.00 | 0.00 | 2.40 |
402 | 438 | 0.956633 | TTGTAGTGTTCTCGCGGACT | 59.043 | 50.000 | 6.13 | 3.63 | 0.00 | 3.85 |
403 | 439 | 1.058404 | GTTGTAGTGTTCTCGCGGAC | 58.942 | 55.000 | 6.13 | 3.57 | 0.00 | 4.79 |
539 | 580 | 4.455877 | CCTCCGTTTCTTTTTAGTCTGCAT | 59.544 | 41.667 | 0.00 | 0.00 | 0.00 | 3.96 |
542 | 583 | 4.638304 | TCCCTCCGTTTCTTTTTAGTCTG | 58.362 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
543 | 584 | 4.347292 | ACTCCCTCCGTTTCTTTTTAGTCT | 59.653 | 41.667 | 0.00 | 0.00 | 0.00 | 3.24 |
544 | 585 | 4.639334 | ACTCCCTCCGTTTCTTTTTAGTC | 58.361 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
545 | 586 | 4.701651 | ACTCCCTCCGTTTCTTTTTAGT | 57.298 | 40.909 | 0.00 | 0.00 | 0.00 | 2.24 |
546 | 587 | 6.403878 | TGATACTCCCTCCGTTTCTTTTTAG | 58.596 | 40.000 | 0.00 | 0.00 | 0.00 | 1.85 |
547 | 588 | 6.363167 | TGATACTCCCTCCGTTTCTTTTTA | 57.637 | 37.500 | 0.00 | 0.00 | 0.00 | 1.52 |
548 | 589 | 5.237236 | TGATACTCCCTCCGTTTCTTTTT | 57.763 | 39.130 | 0.00 | 0.00 | 0.00 | 1.94 |
549 | 590 | 4.903045 | TGATACTCCCTCCGTTTCTTTT | 57.097 | 40.909 | 0.00 | 0.00 | 0.00 | 2.27 |
550 | 591 | 5.437191 | AATGATACTCCCTCCGTTTCTTT | 57.563 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
551 | 592 | 5.437191 | AAATGATACTCCCTCCGTTTCTT | 57.563 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
552 | 593 | 5.897824 | TCTAAATGATACTCCCTCCGTTTCT | 59.102 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
553 | 594 | 6.158023 | TCTAAATGATACTCCCTCCGTTTC | 57.842 | 41.667 | 0.00 | 0.00 | 0.00 | 2.78 |
554 | 595 | 5.453480 | GCTCTAAATGATACTCCCTCCGTTT | 60.453 | 44.000 | 0.00 | 0.00 | 0.00 | 3.60 |
555 | 596 | 4.039366 | GCTCTAAATGATACTCCCTCCGTT | 59.961 | 45.833 | 0.00 | 0.00 | 0.00 | 4.44 |
556 | 597 | 3.574826 | GCTCTAAATGATACTCCCTCCGT | 59.425 | 47.826 | 0.00 | 0.00 | 0.00 | 4.69 |
557 | 598 | 3.829601 | AGCTCTAAATGATACTCCCTCCG | 59.170 | 47.826 | 0.00 | 0.00 | 0.00 | 4.63 |
558 | 599 | 5.542251 | AGAAGCTCTAAATGATACTCCCTCC | 59.458 | 44.000 | 0.00 | 0.00 | 0.00 | 4.30 |
559 | 600 | 6.041523 | ACAGAAGCTCTAAATGATACTCCCTC | 59.958 | 42.308 | 0.00 | 0.00 | 0.00 | 4.30 |
560 | 601 | 5.902431 | ACAGAAGCTCTAAATGATACTCCCT | 59.098 | 40.000 | 0.00 | 0.00 | 0.00 | 4.20 |
561 | 602 | 6.168270 | ACAGAAGCTCTAAATGATACTCCC | 57.832 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
562 | 603 | 8.634444 | TCTAACAGAAGCTCTAAATGATACTCC | 58.366 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
585 | 626 | 9.755804 | CAAATCTGCTCTACTATGAACATTCTA | 57.244 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
614 | 655 | 7.285401 | AGCCAAAATACCAATGTGAATACTAGG | 59.715 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
672 | 713 | 0.106708 | TATGCAGCCTCCGGTCAATC | 59.893 | 55.000 | 0.00 | 0.00 | 0.00 | 2.67 |
721 | 762 | 5.125578 | GCCCTTACTCTTCCATTTTTACCTG | 59.874 | 44.000 | 0.00 | 0.00 | 0.00 | 4.00 |
722 | 763 | 5.262009 | GCCCTTACTCTTCCATTTTTACCT | 58.738 | 41.667 | 0.00 | 0.00 | 0.00 | 3.08 |
723 | 764 | 4.401519 | GGCCCTTACTCTTCCATTTTTACC | 59.598 | 45.833 | 0.00 | 0.00 | 0.00 | 2.85 |
788 | 829 | 5.526846 | GCCACTCTTCCATCTCTCAAATAAG | 59.473 | 44.000 | 0.00 | 0.00 | 0.00 | 1.73 |
842 | 883 | 3.460857 | AGTGATAGTTCGGAGAATGCC | 57.539 | 47.619 | 0.00 | 0.00 | 45.90 | 4.40 |
860 | 901 | 0.036010 | CCGATCTGCACCAAGGAAGT | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1110 | 1156 | 3.242867 | TGTTGTCTCACCTTGAGGATCT | 58.757 | 45.455 | 3.59 | 0.00 | 44.39 | 2.75 |
1175 | 1221 | 0.588252 | CAAAACCACTCAGCGGTCAG | 59.412 | 55.000 | 0.00 | 0.00 | 34.99 | 3.51 |
1178 | 1224 | 0.818040 | GACCAAAACCACTCAGCGGT | 60.818 | 55.000 | 0.00 | 0.00 | 38.85 | 5.68 |
1179 | 1225 | 1.515521 | GGACCAAAACCACTCAGCGG | 61.516 | 60.000 | 0.00 | 0.00 | 0.00 | 5.52 |
1180 | 1226 | 0.817634 | TGGACCAAAACCACTCAGCG | 60.818 | 55.000 | 0.00 | 0.00 | 32.03 | 5.18 |
1181 | 1227 | 0.954452 | CTGGACCAAAACCACTCAGC | 59.046 | 55.000 | 0.00 | 0.00 | 33.57 | 4.26 |
1182 | 1228 | 0.954452 | GCTGGACCAAAACCACTCAG | 59.046 | 55.000 | 0.00 | 0.00 | 33.57 | 3.35 |
1211 | 1257 | 2.543777 | TTCCACGGGAAGAACAAGAG | 57.456 | 50.000 | 1.68 | 0.00 | 36.71 | 2.85 |
1313 | 1359 | 2.425143 | ATCTAGGGCATGTTGTGTGG | 57.575 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
1323 | 1369 | 3.189606 | TCAGGGAGAAAAATCTAGGGCA | 58.810 | 45.455 | 0.00 | 0.00 | 0.00 | 5.36 |
1477 | 1527 | 4.202111 | GCCCTGCGGAAACAATACATTTAT | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
1502 | 1552 | 2.750948 | TGTCACTCTGCCGAAACTTAC | 58.249 | 47.619 | 0.00 | 0.00 | 0.00 | 2.34 |
1511 | 1561 | 3.136763 | CACATATCCATGTCACTCTGCC | 58.863 | 50.000 | 0.00 | 0.00 | 43.73 | 4.85 |
1571 | 1621 | 5.602458 | TCGCATGAATCAGAAGCATAATC | 57.398 | 39.130 | 0.00 | 0.00 | 0.00 | 1.75 |
1580 | 1630 | 5.520376 | TCTAGTGAATCGCATGAATCAGA | 57.480 | 39.130 | 0.00 | 0.00 | 34.76 | 3.27 |
1779 | 1831 | 6.575572 | TGTAACGTTAAACATTTCGCAGAATG | 59.424 | 34.615 | 10.11 | 7.32 | 45.90 | 2.67 |
1816 | 1868 | 8.642885 | GTCTATATTAGATTCTGCATGACAACG | 58.357 | 37.037 | 0.00 | 0.00 | 37.13 | 4.10 |
1880 | 1932 | 7.628769 | AAAAATCAAAGCACAGGTTGAAAAT | 57.371 | 28.000 | 0.00 | 0.00 | 37.31 | 1.82 |
1917 | 1971 | 2.925563 | GAGCATGGAAAGGCAAAATTCG | 59.074 | 45.455 | 0.00 | 0.00 | 0.00 | 3.34 |
1926 | 1980 | 2.019984 | GGTAAGCAGAGCATGGAAAGG | 58.980 | 52.381 | 0.00 | 0.00 | 0.00 | 3.11 |
1964 | 2019 | 4.985409 | CAGATTCGGTAGCTCCTATGTTTC | 59.015 | 45.833 | 0.00 | 0.00 | 0.00 | 2.78 |
1981 | 2036 | 5.734720 | TGATTGACAGTCCTAACCAGATTC | 58.265 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
1998 | 2053 | 4.229353 | TCACCCCATGGTAGAAATGATTGA | 59.771 | 41.667 | 11.73 | 0.00 | 45.57 | 2.57 |
1999 | 2054 | 4.535781 | TCACCCCATGGTAGAAATGATTG | 58.464 | 43.478 | 11.73 | 0.00 | 45.57 | 2.67 |
2000 | 2055 | 4.879295 | TCACCCCATGGTAGAAATGATT | 57.121 | 40.909 | 11.73 | 0.00 | 45.57 | 2.57 |
2001 | 2056 | 5.103558 | TGAATCACCCCATGGTAGAAATGAT | 60.104 | 40.000 | 11.73 | 7.31 | 45.57 | 2.45 |
2013 | 2072 | 5.983333 | AGAAGATTACTGAATCACCCCAT | 57.017 | 39.130 | 0.87 | 0.00 | 43.51 | 4.00 |
2050 | 2109 | 9.265901 | CCAAGTTAGAATCCATGTAATCACTAG | 57.734 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
2055 | 2114 | 9.614792 | AGTAACCAAGTTAGAATCCATGTAATC | 57.385 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
2309 | 2368 | 1.209128 | AGAGACAACACGAACAAGCG | 58.791 | 50.000 | 0.00 | 0.00 | 37.29 | 4.68 |
2320 | 2379 | 7.016361 | ACTGTTCATACAAACAAGAGACAAC | 57.984 | 36.000 | 0.00 | 0.00 | 38.60 | 3.32 |
2457 | 2516 | 6.643770 | GCAAAACAAGAGACATCATGAACAAT | 59.356 | 34.615 | 0.00 | 0.00 | 0.00 | 2.71 |
2607 | 3598 | 4.795278 | GTGCACAATCATGTTTAAGCTAGC | 59.205 | 41.667 | 13.17 | 6.62 | 37.82 | 3.42 |
2642 | 3633 | 6.015434 | AGGAACAAACAGGTTATCCATTGAAC | 60.015 | 38.462 | 5.27 | 0.00 | 35.89 | 3.18 |
2706 | 3697 | 8.531146 | CCCATTTACTTCAGGACAATACAAAAT | 58.469 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
2742 | 3733 | 7.259161 | ACACAAAATACAACCAACACGTATTT | 58.741 | 30.769 | 0.00 | 0.00 | 43.94 | 1.40 |
2747 | 3738 | 6.195613 | CAGTAACACAAAATACAACCAACACG | 59.804 | 38.462 | 0.00 | 0.00 | 0.00 | 4.49 |
2832 | 3823 | 5.567138 | ACAAAAACAAACAGGAGAGACAG | 57.433 | 39.130 | 0.00 | 0.00 | 0.00 | 3.51 |
2905 | 3896 | 6.206634 | GGAGTACACAAATGTTGGAATTCAGA | 59.793 | 38.462 | 7.93 | 0.00 | 40.48 | 3.27 |
2937 | 3928 | 2.217750 | CAGTCGAAACATTGACCCACA | 58.782 | 47.619 | 0.00 | 0.00 | 35.71 | 4.17 |
3019 | 4010 | 7.750458 | GTCACAAACATGACATGTAATTACCAG | 59.250 | 37.037 | 21.10 | 7.83 | 46.89 | 4.00 |
3020 | 4011 | 7.589395 | GTCACAAACATGACATGTAATTACCA | 58.411 | 34.615 | 21.10 | 4.15 | 46.89 | 3.25 |
3032 | 4023 | 2.353269 | TGAACACGGTCACAAACATGAC | 59.647 | 45.455 | 0.00 | 0.00 | 46.95 | 3.06 |
3041 | 4036 | 4.035909 | AGTTAAAACCATGAACACGGTCAC | 59.964 | 41.667 | 0.00 | 0.00 | 33.17 | 3.67 |
3047 | 4042 | 7.254227 | TGTAGTGAGTTAAAACCATGAACAC | 57.746 | 36.000 | 0.00 | 0.00 | 0.00 | 3.32 |
3065 | 4060 | 1.202582 | AGCGTAGACTTGCCTGTAGTG | 59.797 | 52.381 | 0.00 | 0.00 | 0.00 | 2.74 |
3068 | 4063 | 3.087031 | AGTAAGCGTAGACTTGCCTGTA | 58.913 | 45.455 | 0.00 | 0.00 | 33.23 | 2.74 |
3069 | 4064 | 1.893801 | AGTAAGCGTAGACTTGCCTGT | 59.106 | 47.619 | 0.00 | 0.00 | 33.23 | 4.00 |
3173 | 4552 | 5.448632 | GGATTTGATTGTGATACCACGTTCC | 60.449 | 44.000 | 0.00 | 0.00 | 46.06 | 3.62 |
3551 | 4951 | 6.529125 | CACCAAGTTTTGCATCTTCATATGTC | 59.471 | 38.462 | 1.90 | 0.00 | 0.00 | 3.06 |
3694 | 5100 | 4.098501 | CCCAAAGCCTCTCCATCATTTTAC | 59.901 | 45.833 | 0.00 | 0.00 | 0.00 | 2.01 |
4145 | 5551 | 2.489938 | ACGCAAAGAATCTGCCCTTA | 57.510 | 45.000 | 0.00 | 0.00 | 36.40 | 2.69 |
4355 | 5761 | 4.778534 | AGCATTCTTTGTGATGAACTGG | 57.221 | 40.909 | 0.00 | 0.00 | 0.00 | 4.00 |
4478 | 5884 | 2.778299 | TCCACAAGTTTGGGAAGATCG | 58.222 | 47.619 | 0.00 | 0.00 | 37.24 | 3.69 |
4685 | 6091 | 2.394563 | GCGGCAGGACTTCTCAAGC | 61.395 | 63.158 | 0.00 | 0.00 | 0.00 | 4.01 |
4955 | 6361 | 2.157668 | CACAACGGAGTCCTTGATTTCG | 59.842 | 50.000 | 21.20 | 4.46 | 45.00 | 3.46 |
5051 | 6457 | 1.545614 | CCGTGTGGAGAACAACGTCG | 61.546 | 60.000 | 0.00 | 0.00 | 41.57 | 5.12 |
5069 | 6475 | 1.072965 | CCTCCCCTGTGAATAGCATCC | 59.927 | 57.143 | 0.00 | 0.00 | 0.00 | 3.51 |
5087 | 6493 | 1.990060 | CGGGATGACCTGACCACCT | 60.990 | 63.158 | 0.00 | 0.00 | 44.87 | 4.00 |
5524 | 6933 | 4.343814 | TGGCCGAGATAACAGATAACATGA | 59.656 | 41.667 | 0.00 | 0.00 | 0.00 | 3.07 |
5543 | 6952 | 6.643388 | ACCAAGAATAGATCAAAAATTGGCC | 58.357 | 36.000 | 15.09 | 0.00 | 39.62 | 5.36 |
5561 | 6970 | 3.643320 | ACATCTCTTGACACAGACCAAGA | 59.357 | 43.478 | 0.00 | 0.00 | 44.38 | 3.02 |
5591 | 7000 | 2.640826 | ACCCAAGGAACTGGAATACGAA | 59.359 | 45.455 | 0.00 | 0.00 | 40.86 | 3.85 |
5592 | 7001 | 2.262637 | ACCCAAGGAACTGGAATACGA | 58.737 | 47.619 | 0.00 | 0.00 | 40.86 | 3.43 |
5621 | 7030 | 3.528597 | AGAGACCGAAATAGGTTCAGC | 57.471 | 47.619 | 0.00 | 0.00 | 46.09 | 4.26 |
5669 | 7078 | 7.443272 | TCAACCACTCAATCAAGCATATCATAG | 59.557 | 37.037 | 0.00 | 0.00 | 0.00 | 2.23 |
5759 | 7170 | 5.163499 | ACGCAAGGAAACATTGGAAAAACTA | 60.163 | 36.000 | 0.00 | 0.00 | 46.39 | 2.24 |
5767 | 7178 | 1.879380 | TCAGACGCAAGGAAACATTGG | 59.121 | 47.619 | 0.00 | 0.00 | 46.39 | 3.16 |
5791 | 7202 | 1.541379 | ATAAAACCAGTTGGGGCGTC | 58.459 | 50.000 | 2.79 | 0.00 | 42.91 | 5.19 |
5792 | 7203 | 1.616374 | CAATAAAACCAGTTGGGGCGT | 59.384 | 47.619 | 2.79 | 0.00 | 42.91 | 5.68 |
5793 | 7204 | 1.889829 | TCAATAAAACCAGTTGGGGCG | 59.110 | 47.619 | 2.79 | 0.00 | 42.91 | 6.13 |
5887 | 7298 | 5.940192 | ACAAACAGAATCAATGAGCGTAA | 57.060 | 34.783 | 0.00 | 0.00 | 0.00 | 3.18 |
5999 | 7410 | 7.492994 | GGGTGTTTCTTAAGTTAAATGCAACAA | 59.507 | 33.333 | 1.63 | 0.00 | 0.00 | 2.83 |
6051 | 7462 | 1.067916 | GCCCAGGTTGCACTTTGTG | 59.932 | 57.895 | 0.00 | 0.00 | 36.51 | 3.33 |
6120 | 7563 | 9.739276 | TTCAAGAGTGAACTTCCATTTATATGT | 57.261 | 29.630 | 0.00 | 0.00 | 38.88 | 2.29 |
6322 | 7779 | 9.074576 | AGTAAAAACAGAAATTACCAGGGTTAG | 57.925 | 33.333 | 0.00 | 0.00 | 31.43 | 2.34 |
6523 | 7980 | 4.285851 | GCATCTATACGCCAGCCC | 57.714 | 61.111 | 0.00 | 0.00 | 0.00 | 5.19 |
6631 | 8089 | 2.545526 | AGAGTCAAGTTCATGCACAACG | 59.454 | 45.455 | 0.00 | 0.00 | 0.00 | 4.10 |
6666 | 8124 | 8.630917 | GGTAAAGTGCAAGAGAGACTATATACA | 58.369 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
6667 | 8125 | 8.630917 | TGGTAAAGTGCAAGAGAGACTATATAC | 58.369 | 37.037 | 0.00 | 0.00 | 0.00 | 1.47 |
6668 | 8126 | 8.762481 | TGGTAAAGTGCAAGAGAGACTATATA | 57.238 | 34.615 | 0.00 | 0.00 | 0.00 | 0.86 |
6669 | 8127 | 7.661536 | TGGTAAAGTGCAAGAGAGACTATAT | 57.338 | 36.000 | 0.00 | 0.00 | 0.00 | 0.86 |
6670 | 8128 | 7.661536 | ATGGTAAAGTGCAAGAGAGACTATA | 57.338 | 36.000 | 0.00 | 0.00 | 0.00 | 1.31 |
6671 | 8129 | 6.552445 | ATGGTAAAGTGCAAGAGAGACTAT | 57.448 | 37.500 | 0.00 | 0.00 | 0.00 | 2.12 |
6672 | 8130 | 6.436218 | TGTATGGTAAAGTGCAAGAGAGACTA | 59.564 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
6673 | 8131 | 4.899352 | ATGGTAAAGTGCAAGAGAGACT | 57.101 | 40.909 | 0.00 | 0.00 | 0.00 | 3.24 |
6674 | 8132 | 5.479306 | TGTATGGTAAAGTGCAAGAGAGAC | 58.521 | 41.667 | 0.00 | 0.00 | 0.00 | 3.36 |
6675 | 8133 | 5.738619 | TGTATGGTAAAGTGCAAGAGAGA | 57.261 | 39.130 | 0.00 | 0.00 | 0.00 | 3.10 |
6676 | 8134 | 7.307632 | GCATATGTATGGTAAAGTGCAAGAGAG | 60.308 | 40.741 | 4.29 | 0.00 | 34.32 | 3.20 |
6677 | 8135 | 6.483307 | GCATATGTATGGTAAAGTGCAAGAGA | 59.517 | 38.462 | 4.29 | 0.00 | 34.32 | 3.10 |
6678 | 8136 | 6.260714 | TGCATATGTATGGTAAAGTGCAAGAG | 59.739 | 38.462 | 4.29 | 0.00 | 38.27 | 2.85 |
6679 | 8137 | 6.118852 | TGCATATGTATGGTAAAGTGCAAGA | 58.881 | 36.000 | 4.29 | 0.00 | 38.27 | 3.02 |
6680 | 8138 | 6.375945 | TGCATATGTATGGTAAAGTGCAAG | 57.624 | 37.500 | 4.29 | 0.00 | 38.27 | 4.01 |
6681 | 8139 | 6.957920 | ATGCATATGTATGGTAAAGTGCAA | 57.042 | 33.333 | 5.40 | 0.00 | 43.48 | 4.08 |
6682 | 8140 | 8.042944 | CATATGCATATGTATGGTAAAGTGCA | 57.957 | 34.615 | 30.55 | 0.00 | 44.24 | 4.57 |
6696 | 8154 | 4.226427 | AGGGCCAGTACATATGCATATG | 57.774 | 45.455 | 34.80 | 34.80 | 44.37 | 1.78 |
6697 | 8155 | 4.568380 | CCAAGGGCCAGTACATATGCATAT | 60.568 | 45.833 | 13.63 | 13.63 | 0.00 | 1.78 |
6698 | 8156 | 3.244875 | CCAAGGGCCAGTACATATGCATA | 60.245 | 47.826 | 9.27 | 9.27 | 0.00 | 3.14 |
6699 | 8157 | 2.489619 | CCAAGGGCCAGTACATATGCAT | 60.490 | 50.000 | 6.18 | 3.79 | 0.00 | 3.96 |
6700 | 8158 | 1.133823 | CCAAGGGCCAGTACATATGCA | 60.134 | 52.381 | 6.18 | 0.00 | 0.00 | 3.96 |
6701 | 8159 | 1.609208 | CCAAGGGCCAGTACATATGC | 58.391 | 55.000 | 6.18 | 0.00 | 0.00 | 3.14 |
6702 | 8160 | 1.609208 | GCCAAGGGCCAGTACATATG | 58.391 | 55.000 | 6.18 | 0.00 | 44.06 | 1.78 |
6714 | 8172 | 1.867595 | ATTCACAGGAGGGCCAAGGG | 61.868 | 60.000 | 6.18 | 0.00 | 36.29 | 3.95 |
6715 | 8173 | 0.682209 | CATTCACAGGAGGGCCAAGG | 60.682 | 60.000 | 6.18 | 0.00 | 36.29 | 3.61 |
6716 | 8174 | 1.318158 | GCATTCACAGGAGGGCCAAG | 61.318 | 60.000 | 6.18 | 0.00 | 36.29 | 3.61 |
6717 | 8175 | 1.304381 | GCATTCACAGGAGGGCCAA | 60.304 | 57.895 | 6.18 | 0.00 | 36.29 | 4.52 |
6718 | 8176 | 2.356278 | GCATTCACAGGAGGGCCA | 59.644 | 61.111 | 6.18 | 0.00 | 36.29 | 5.36 |
6719 | 8177 | 1.751927 | CTGCATTCACAGGAGGGCC | 60.752 | 63.158 | 0.00 | 0.00 | 33.85 | 5.80 |
6720 | 8178 | 0.610232 | AACTGCATTCACAGGAGGGC | 60.610 | 55.000 | 0.00 | 0.00 | 42.21 | 5.19 |
6721 | 8179 | 1.171308 | CAACTGCATTCACAGGAGGG | 58.829 | 55.000 | 0.00 | 0.00 | 42.21 | 4.30 |
6722 | 8180 | 0.524862 | GCAACTGCATTCACAGGAGG | 59.475 | 55.000 | 0.00 | 0.00 | 42.21 | 4.30 |
6723 | 8181 | 0.524862 | GGCAACTGCATTCACAGGAG | 59.475 | 55.000 | 3.76 | 0.00 | 44.36 | 3.69 |
6724 | 8182 | 0.895100 | GGGCAACTGCATTCACAGGA | 60.895 | 55.000 | 3.76 | 0.00 | 44.36 | 3.86 |
6725 | 8183 | 1.180456 | TGGGCAACTGCATTCACAGG | 61.180 | 55.000 | 3.76 | 0.00 | 44.36 | 4.00 |
6726 | 8184 | 0.892755 | ATGGGCAACTGCATTCACAG | 59.107 | 50.000 | 3.76 | 0.00 | 44.36 | 3.66 |
6727 | 8185 | 1.273048 | GAATGGGCAACTGCATTCACA | 59.727 | 47.619 | 3.76 | 0.00 | 41.87 | 3.58 |
6728 | 8186 | 1.404583 | GGAATGGGCAACTGCATTCAC | 60.405 | 52.381 | 13.60 | 3.77 | 43.18 | 3.18 |
6729 | 8187 | 0.896923 | GGAATGGGCAACTGCATTCA | 59.103 | 50.000 | 13.60 | 5.85 | 43.18 | 2.57 |
6730 | 8188 | 1.188863 | AGGAATGGGCAACTGCATTC | 58.811 | 50.000 | 3.76 | 5.29 | 41.67 | 2.67 |
6731 | 8189 | 2.497273 | GTTAGGAATGGGCAACTGCATT | 59.503 | 45.455 | 3.76 | 0.00 | 44.36 | 3.56 |
6732 | 8190 | 2.102578 | GTTAGGAATGGGCAACTGCAT | 58.897 | 47.619 | 3.76 | 0.00 | 44.36 | 3.96 |
6733 | 8191 | 1.202989 | TGTTAGGAATGGGCAACTGCA | 60.203 | 47.619 | 3.76 | 0.00 | 44.36 | 4.41 |
6734 | 8192 | 1.544724 | TGTTAGGAATGGGCAACTGC | 58.455 | 50.000 | 0.00 | 0.00 | 41.14 | 4.40 |
6735 | 8193 | 2.428171 | CCATGTTAGGAATGGGCAACTG | 59.572 | 50.000 | 0.00 | 0.00 | 40.86 | 3.16 |
6736 | 8194 | 2.738743 | CCATGTTAGGAATGGGCAACT | 58.261 | 47.619 | 0.00 | 0.00 | 40.86 | 3.16 |
6743 | 8201 | 6.236409 | AGCATCTGATACCATGTTAGGAATG | 58.764 | 40.000 | 0.00 | 0.00 | 0.00 | 2.67 |
6744 | 8202 | 6.445451 | AGCATCTGATACCATGTTAGGAAT | 57.555 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
6745 | 8203 | 5.894298 | AGCATCTGATACCATGTTAGGAA | 57.106 | 39.130 | 0.00 | 0.00 | 0.00 | 3.36 |
6746 | 8204 | 5.894298 | AAGCATCTGATACCATGTTAGGA | 57.106 | 39.130 | 0.00 | 0.00 | 0.00 | 2.94 |
6747 | 8205 | 6.169094 | CCTAAGCATCTGATACCATGTTAGG | 58.831 | 44.000 | 0.00 | 0.00 | 32.99 | 2.69 |
6748 | 8206 | 6.763355 | ACCTAAGCATCTGATACCATGTTAG | 58.237 | 40.000 | 0.00 | 0.00 | 0.00 | 2.34 |
6749 | 8207 | 6.747414 | ACCTAAGCATCTGATACCATGTTA | 57.253 | 37.500 | 0.00 | 0.00 | 0.00 | 2.41 |
6750 | 8208 | 5.636903 | ACCTAAGCATCTGATACCATGTT | 57.363 | 39.130 | 0.00 | 0.00 | 0.00 | 2.71 |
6751 | 8209 | 5.455326 | GGAACCTAAGCATCTGATACCATGT | 60.455 | 44.000 | 0.00 | 0.00 | 0.00 | 3.21 |
6752 | 8210 | 4.999950 | GGAACCTAAGCATCTGATACCATG | 59.000 | 45.833 | 0.00 | 0.00 | 0.00 | 3.66 |
6753 | 8211 | 4.910304 | AGGAACCTAAGCATCTGATACCAT | 59.090 | 41.667 | 0.00 | 0.00 | 0.00 | 3.55 |
6754 | 8212 | 4.298626 | AGGAACCTAAGCATCTGATACCA | 58.701 | 43.478 | 0.00 | 0.00 | 0.00 | 3.25 |
6755 | 8213 | 4.591072 | AGAGGAACCTAAGCATCTGATACC | 59.409 | 45.833 | 0.00 | 0.00 | 0.00 | 2.73 |
6756 | 8214 | 5.279256 | GGAGAGGAACCTAAGCATCTGATAC | 60.279 | 48.000 | 0.00 | 0.00 | 0.00 | 2.24 |
6757 | 8215 | 4.835615 | GGAGAGGAACCTAAGCATCTGATA | 59.164 | 45.833 | 0.00 | 0.00 | 0.00 | 2.15 |
6758 | 8216 | 3.645687 | GGAGAGGAACCTAAGCATCTGAT | 59.354 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
6759 | 8217 | 3.034635 | GGAGAGGAACCTAAGCATCTGA | 58.965 | 50.000 | 0.00 | 0.00 | 0.00 | 3.27 |
6760 | 8218 | 3.037549 | AGGAGAGGAACCTAAGCATCTG | 58.962 | 50.000 | 0.00 | 0.00 | 35.84 | 2.90 |
6761 | 8219 | 3.037549 | CAGGAGAGGAACCTAAGCATCT | 58.962 | 50.000 | 0.00 | 0.00 | 35.84 | 2.90 |
6762 | 8220 | 2.484594 | GCAGGAGAGGAACCTAAGCATC | 60.485 | 54.545 | 0.00 | 0.00 | 35.84 | 3.91 |
6763 | 8221 | 1.488393 | GCAGGAGAGGAACCTAAGCAT | 59.512 | 52.381 | 0.00 | 0.00 | 35.84 | 3.79 |
6764 | 8222 | 0.905357 | GCAGGAGAGGAACCTAAGCA | 59.095 | 55.000 | 0.00 | 0.00 | 35.84 | 3.91 |
6765 | 8223 | 1.138069 | GAGCAGGAGAGGAACCTAAGC | 59.862 | 57.143 | 0.00 | 0.00 | 35.84 | 3.09 |
6766 | 8224 | 1.760029 | GGAGCAGGAGAGGAACCTAAG | 59.240 | 57.143 | 0.00 | 0.00 | 35.84 | 2.18 |
6767 | 8225 | 1.622725 | GGGAGCAGGAGAGGAACCTAA | 60.623 | 57.143 | 0.00 | 0.00 | 35.84 | 2.69 |
6768 | 8226 | 0.032017 | GGGAGCAGGAGAGGAACCTA | 60.032 | 60.000 | 0.00 | 0.00 | 35.84 | 3.08 |
6769 | 8227 | 1.306568 | GGGAGCAGGAGAGGAACCT | 60.307 | 63.158 | 0.00 | 0.00 | 38.40 | 3.50 |
6770 | 8228 | 2.726351 | CGGGAGCAGGAGAGGAACC | 61.726 | 68.421 | 0.00 | 0.00 | 0.00 | 3.62 |
6771 | 8229 | 2.896443 | CGGGAGCAGGAGAGGAAC | 59.104 | 66.667 | 0.00 | 0.00 | 0.00 | 3.62 |
6822 | 8280 | 4.862823 | AGGTAGAGGGAGGCCGGC | 62.863 | 72.222 | 21.18 | 21.18 | 0.00 | 6.13 |
6823 | 8281 | 2.522193 | GAGGTAGAGGGAGGCCGG | 60.522 | 72.222 | 0.00 | 0.00 | 0.00 | 6.13 |
6824 | 8282 | 2.907917 | CGAGGTAGAGGGAGGCCG | 60.908 | 72.222 | 0.00 | 0.00 | 0.00 | 6.13 |
6825 | 8283 | 1.829096 | GACGAGGTAGAGGGAGGCC | 60.829 | 68.421 | 0.00 | 0.00 | 0.00 | 5.19 |
6826 | 8284 | 2.188161 | CGACGAGGTAGAGGGAGGC | 61.188 | 68.421 | 0.00 | 0.00 | 0.00 | 4.70 |
6827 | 8285 | 2.188161 | GCGACGAGGTAGAGGGAGG | 61.188 | 68.421 | 0.00 | 0.00 | 0.00 | 4.30 |
6828 | 8286 | 2.188161 | GGCGACGAGGTAGAGGGAG | 61.188 | 68.421 | 0.00 | 0.00 | 0.00 | 4.30 |
6829 | 8287 | 2.124403 | GGCGACGAGGTAGAGGGA | 60.124 | 66.667 | 0.00 | 0.00 | 0.00 | 4.20 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.